npm - @sjcrh/proteinpaint-client - Versions diffs - 2.148.2 → 2.150.0 - Mend

@sjcrh/proteinpaint-client 2.148.2 → 2.150.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (554) hide show

package/dist/{2dmaf-WODQV5W4.js → 2dmaf-U46Q6U2C.js} RENAMED Viewed

@@ -8,13 +8,13 @@ import {
   renderSandboxFormDiv,
   sayerror,
   to_svg
-} from "./chunk-W4TUKJCB.js";
+} from "./chunk-CII543O5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-WE3EAKHW.js";
-import "./chunk-WP3DXIXL.js";
-import "./chunk-RY7CVONT.js";
+import "./chunk-MGCBVRAS.js";
+import "./chunk-DUTCGKL3.js";
+import "./chunk-5MWX5HUZ.js";
 import "./chunk-IQIXGTQV.js";
-import "./chunk-P6LA7M67.js";
+import "./chunk-BXU7CROE.js";
 import {
   mclass,
   mclassnonstandard
@@ -1362,4 +1362,4 @@ export {
   d2mafparseinput,
   d2mafui
 };
-//# sourceMappingURL=2dmaf-WODQV5W4.js.map
+//# sourceMappingURL=2dmaf-U46Q6U2C.js.map

package/dist/{AIProjectAdmin-6L4KQG6J.js → AIProjectAdmin-7YBDVEQY.js} RENAMED Viewed

@@ -1,21 +1,21 @@
 import {
   PlotBase
-} from "./chunk-FFBSCYRY.js";
+} from "./chunk-UMVOMUR4.js";
 import {
   filterInit,
   getNormalRoot,
   renderTable,
   sayerror
-} from "./chunk-W4TUKJCB.js";
+} from "./chunk-CII543O5.js";
 import "./chunk-HJ6L54YS.js";
 import {
   dofetch2,
   dofetch3
-} from "./chunk-WE3EAKHW.js";
-import "./chunk-WP3DXIXL.js";
-import "./chunk-RY7CVONT.js";
+} from "./chunk-MGCBVRAS.js";
+import "./chunk-DUTCGKL3.js";
+import "./chunk-5MWX5HUZ.js";
 import "./chunk-IQIXGTQV.js";
-import "./chunk-P6LA7M67.js";
+import "./chunk-BXU7CROE.js";
 import {
   getColors
 } from "./chunk-FIZTETYY.js";
@@ -287,7 +287,7 @@ var AIProjectAdminInteractions = class {
       );
       images = response.images;
     }
-    const wsiViewer = await import("./plot.wsi-57WEM7OG.js");
+    const wsiViewer = await import("./plot.wsi-3OLTK6ZJ.js");
     wsiViewer.default(this.dslabel, holder, { name: this.genome }, null, config.settings.project.id, images, true);
   }
   async appDispatchEdit(settings, config = {}) {
@@ -608,6 +608,8 @@ async function getPlotConfig(opts) {
     chartType: "AIProjectAdmin",
     subfolder: "aiProjectAdmin",
     extension: "ts",
+    hidePlotFilter: true,
+    //Disable the filter in the sandbox header
     settings: getDefaultAIProjectAdminSettings(opts.overrides)
   };
   if (opts.settings?.project && !opts.settings?.project?.type) {
@@ -620,4 +622,4 @@ export {
   componentInit,
   getPlotConfig
 };
-//# sourceMappingURL=AIProjectAdmin-6L4KQG6J.js.map
+//# sourceMappingURL=AIProjectAdmin-7YBDVEQY.js.map

package/dist/{AIProjectAdmin-6L4KQG6J.js.map → AIProjectAdmin-7YBDVEQY.js.map} RENAMED Viewed

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../plots/aiProjectAdmin/defaults.ts", "../plots/aiProjectAdmin/repo/ProjectReposity.ts", "../plots/aiProjectAdmin/view/ProjectAdminRender.ts", "../plots/aiProjectAdmin/interactions/AIProjectAdminInteractions.ts", "../plots/aiProjectAdmin/view/ClassesTableRender.ts", "../plots/aiProjectAdmin/view/SelectorTableRender.ts", "../plots/aiProjectAdmin/view/CreateProjectRender.ts", "../plots/aiProjectAdmin/AIProjectAdmin.ts"],
-  "sourcesContent": ["import type Settings from './Settings'\n\nexport function getDefaultAIProjectAdminSettings(overrides = {}): Settings {\n\tconst defaults: Settings = {}\n\treturn Object.assign(defaults, overrides)\n}\n", "import { dofetch2, dofetch3 } from '#common/dofetch'\nimport type { AIProjectAdminRequest, AIProjectAdminResponse } from '#types'\n\nexport class ProjectReposity {\n\tpublic async getProjects(genome: string, dslabel: string): Promise<string[]> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'list'\n\t\t}\n\t\ttry {\n\t\t\tconst response = await dofetch3('aiProjectAdmin', { body })\n\t\t\treturn response || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/** Gets the image paths from db */\n\tpublic async getImagePaths(genome: string, dslabel: string, project: any): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'images',\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\treturn await dofetch3('aiProjectAdmin', { body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching images:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\tpublic async updateProject(_body: any, method: string): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = Object.assign({}, _body, { for: 'admin' })\n\t\ttry {\n\t\t\tif (method == 'PUT' || method == 'DELETE') {\n\t\t\t\t/** 3rd argument is for serverData caching.\n\t\t\t\t * Do not cache put or delete requests */\n\t\t\t\treturn await dofetch2('aiProjectAdmin', { method, body }, {})\n\t\t\t}\n\t\t\treturn await dofetch3('aiProjectAdmin', { method, body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t//TODO: Will need a method to call metadata API, then build dictionary\n\tasync getTerms(app: any): Promise<any> {\n\t\tconst root = { id: '__root', name: 'root', __tree_isroot: true }\n\t\ttry {\n\t\t\tawait app.vocabApi.buildAdHocDictionary()\n\t\t\tconst terms = await app.vocabApi.getTermChildren(root, [])\n\t\t\treturn terms || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error getting terms:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n}\n", "import { renderTable, sayerror } from '#dom'\nimport { debounce } from 'debounce'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\n\nexport class ProjectAdminRender {\n\tdom: any\n\tprojects: any[]\n\tinteractions: AIProjectAdminInteractions\n\n\tconstructor(dom: any, projects: any[], interactions: AIProjectAdminInteractions) {\n\t\tthis.dom = dom\n\t\tthis.projects = projects //returns as [{ value: 'Project1' }, { value: 'Project2' }, ...]\n\t\tthis.interactions = interactions\n\t}\n\n\t/** Renders project administration UI, allowing users to\n\t * create new projects or edit existing ones.*/\n\trenderProjectAdmin() {\n\t\tconst projectDiv = this.dom.holder\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-projects')\n\t\t\t.attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\t\tthis.renderCreateProject(projectDiv)\n\t\tthis.renderProjectSelection(projectDiv)\n\t}\n\n\t/** Users submit a new project name before sample\n\t * filtering UI to finalize project creation.*/\n\trenderCreateProject(projectDiv) {\n\t\tconst newProjectDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-new').style('padding', '10px')\n\n\t\tconst input = newProjectDiv\n\t\t\t.append('input')\n\t\t\t.attr('id', 'sjpp-new-project-name')\n\t\t\t.attr('display', 'inline-block')\n\t\t\t.attr('placeholder', 'New project name')\n\n\t\tconst button = newProjectDiv\n\t\t\t.append('div')\n\t\t\t.text('Create Project')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.property('disabled', true)\n\t\t\t.on('click', async () => {\n\t\t\t\tconst projectName = input.property('value')\n\t\t\t\tconst prjtNameLen = projectName.trim().length\n\n\t\t\t\tconst showError = (msg: string) => {\n\t\t\t\t\tsayerror(this.dom.errorDiv, msg)\n\t\t\t\t\tinput.property('value', '')\n\t\t\t\t\tbutton.property('disabled', true)\n\n\t\t\t\t\t//Show error for 3 seconds, then remove\n\t\t\t\t\tsetTimeout(() => {\n\t\t\t\t\t\tthis.dom.errorDiv.selectAll('*').remove()\n\t\t\t\t\t}, 3000)\n\t\t\t\t}\n\n\t\t\t\tif (prjtNameLen == 0) {\n\t\t\t\t\t//Shouldn't be necessary because of the debouncer\n\t\t\t\t\treturn showError('Project name cannot be empty')\n\t\t\t\t}\n\t\t\t\tif (prjtNameLen > 50 || prjtNameLen < 3) {\n\t\t\t\t\treturn showError('Project name must be between 3 and 50 characters')\n\t\t\t\t}\n\t\t\t\tconst notUnique = this.projects.some((p: any) => p.name === projectName.trim())\n\t\t\t\tif (notUnique) {\n\t\t\t\t\treturn showError(`Project name '${projectName}' already exists`)\n\t\t\t\t}\n\n\t\t\t\t//Show project name in sandbox header\n\t\t\t\tif (this.dom.header) this.dom.header.text(`Project: ${projectName}`)\n\n\t\t\t\t//calls main() to trigger CreateProjectRender\n\t\t\t\tawait this.interactions.appDispatchEdit({ settings: { project: { name: projectName, type: 'new' } } })\n\t\t\t})\n\n\t\tinput.on('keydown', () => {\n\t\t\tconst debouncer = () => {\n\t\t\t\tbutton.property('disabled', input.property('value').length == 0)\n\t\t\t}\n\t\t\tdebounce(debouncer, 300)()\n\t\t})\n\t}\n\n\t/** Users may select an existing project from a table\n\t * returned for the db to edit or delete, depending\n\t * on user roles.*/\n\trenderProjectSelection(projectDiv) {\n\t\tif (!this.projects.length) return\n\n\t\tconst tableDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-table').style('padding', '10px')\n\t\tconst columns = [{ label: 'Project', sortable: true }]\n\n\t\tconst columnButtons = [\n\t\t\t{\n\t\t\t\ttext: 'Edit',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\t//_ = event, __ = idx\n\t\t\t\tcallback: async (_, idx) => {\n\t\t\t\t\t/** TODO: open wsisamples plot ||\n\t\t\t\t\t *  get project details rather than edit the db */\n\t\t\t\t\tconst project = this.projects[idx]\n\t\t\t\t\tawait this.interactions.appDispatchEdit({ settings: { project } })\n\t\t\t\t\t// remove 'dev' for production\n\t\t\t\t\tthis.interactions.launchViewer(this.dom.holder, [])\n\t\t\t\t}\n\t\t\t},\n\t\t\t{\n\t\t\t\t//TODO: Add logic for admins only once user roles are implemented\n\t\t\t\t//Leave here for development\n\t\t\t\ttext: 'Delete',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\tcallback: (_, i) => {\n\t\t\t\t\tconst project = this.projects[i]\n\t\t\t\t\tthis.interactions.deleteProject(project)\n\n\t\t\t\t\t//Update UI after deletion. Maybe cleaner way to handle this?\n\t\t\t\t\t//Maybe app.dispatch and rerender instead?\n\t\t\t\t\tthis.projects.splice(i, 1)\n\t\t\t\t\t//Remove the table from the projectDiv and re-render\n\t\t\t\t\tprojectDiv.select('.sjpp-project-select-table').remove()\n\t\t\t\t\tthis.renderProjectSelection(projectDiv)\n\t\t\t\t}\n\t\t\t}\n\t\t]\n\n\t\trenderTable({\n\t\t\tdiv: tableDiv,\n\t\t\trows: this.projects.map((p: any) => {\n\t\t\t\treturn [{ value: p.name }]\n\t\t\t}),\n\t\t\theader: {\n\t\t\t\tallowSort: true\n\t\t\t},\n\t\t\tcolumns,\n\t\t\tsingleMode: true,\n\t\t\tcolumnButtons\n\t\t})\n\t}\n}\n", "import type { ProjectReposity } from '../repo/ProjectReposity'\nimport type { AIProjectAdminResponse } from '#types'\n\nexport class AIProjectAdminInteractions {\n\tapp: any\n\tid: string\n\tgenome: string\n\tdslabel: string\n\tprjtRepo: ProjectReposity\n\n\tconstructor(app: any, id: string, prjtRepo: ProjectReposity) {\n\t\tthis.app = app\n\t\tthis.id = id\n\t\tthis.genome = app.vocabApi.vocab.genome\n\t\tthis.dslabel = app.vocabApi.vocab.dslabel\n\t\tthis.prjtRepo = prjtRepo\n\t}\n\n\tasync addProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst projectObject = Object.assign({}, config.settings.project, opts.project)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: projectObject\n\t\t}\n\t\ttry {\n\t\t\tawait this.prjtRepo.updateProject(body, 'PUT')\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error adding project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync editProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst project = Object.assign(\n\t\t\t{},\n\t\t\tconfig.settings.project,\n\t\t\t{\n\t\t\t\ttype: 'edit'\n\t\t\t},\n\t\t\topts.project\n\t\t)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\tconst res = (await this.prjtRepo.updateProject(body, 'POST')) as any\n\t\t\tif (!project.id) project.id = res.projectId\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error editing project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t\tawait this.appDispatchEdit({ settings: { project } }, config)\n\t}\n\n\tasync deleteProject(project: { value: string; id: number }): Promise<void> {\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: {\n\t\t\t\tname: project.value,\n\t\t\t\tid: project.id\n\t\t\t}\n\t\t}\n\n\t\ttry {\n\t\t\tawait this.prjtRepo.updateProject(body, 'DELETE')\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error deleting project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync getFilteredImages(filter: any): Promise<AIProjectAdminResponse> {\n\t\tconst config = this.getConfig()\n\t\treturn await this.app.vocabApi.getFilteredAiImages(config.settings.project, filter)\n\t}\n\n\tasync launchViewer(holder: any, _images?: string[]): Promise<void> {\n\t\tholder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\n\t\tconst config = this.getConfig()\n\t\tlet images: string[] = []\n\n\t\tif (_images && _images.length > 0) {\n\t\t\timages = _images\n\t\t} else {\n\t\t\tconst response: AIProjectAdminResponse = await this.prjtRepo.getImagePaths(\n\t\t\t\tthis.genome,\n\t\t\t\tthis.dslabel,\n\t\t\t\tconfig.settings.project\n\t\t\t)\n\t\t\timages = response.images\n\t\t}\n\n\t\tconst wsiViewer = await import('#plots/wsiviewer/plot.wsi.js')\n\t\twsiViewer.default(this.dslabel, holder, { name: this.genome }, null, config.settings.project.id, images, true)\n\t}\n\n\tpublic async appDispatchEdit(settings: any, config: any = {}): Promise<void> {\n\t\tif (!config?.settings) {\n\t\t\tconfig = this.getConfig()\n\t\t\tif (!config) throw new Error(`No plot with id='${this.id}' found.`)\n\t\t}\n\n\t\tawait this.app.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: this.id,\n\t\t\tconfig: Object.assign(settings, config.settings)\n\t\t})\n\t}\n\n\tprivate getConfig(): any {\n\t\treturn this.app.getState().plots.find((p: any) => p.id === this.id)\n\t}\n}\n", "import { renderTable } from '#dom'\nimport { getColors } from '#shared/common.js'\nimport { rgb } from 'd3-color'\nimport type { TableColumn, TableRow } from '#dom'\nimport type { Elem } from '../../../types/d3'\n\nexport class ClassesTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Elem\n\t\tbtnDiv: Elem\n\t}\n\tcolumns: TableColumn[]\n\trows: TableRow[]\n\t/** table.ts updates this.rows and cell values in editCallback\n\t * Save a copy to check for duplicates when editing class names.*/\n\trowsCopy: TableRow[]\n\n\tconstructor(holder: any, rows?: TableRow[]) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder.append('div'),\n\t\t\tbtnDiv: holder.append('div')\n\t\t}\n\t\tthis.columns = [\n\t\t\t{ label: '' }, // Empty for the delete icon\n\t\t\t{\n\t\t\t\tlabel: 'NAME',\n\t\t\t\teditCallback: (rowIdx, cell) => {\n\t\t\t\t\tconst newValue = (cell.value as string).trim()\n\t\t\t\t\tconst foundSameName = this.rows.some((r, i) => newValue === (r[1].value as string).trim() && i !== rowIdx)\n\t\t\t\t\tif (foundSameName) {\n\t\t\t\t\t\talert(`Class name '${newValue}' already exists`)\n\t\t\t\t\t\t/** Reset to original value\n\t\t\t\t\t\t * renderTable() updates arg.rows and cell value before this callback.\n\t\t\t\t\t\t * This resets the value to the original value */\n\t\t\t\t\t\tcell.value = this.rowsCopy[rowIdx][1].value\n\t\t\t\t\t\tcell.__td.text(this.rowsCopy[rowIdx][1].value)\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\t\t\t\t}\n\t\t\t},\n\t\t\t{ label: 'COLOR' }\n\t\t]\n\t\tconst colorScale = getColors(5)\n\t\tthis.rows = rows || this.setDefaultClasses(colorScale)\n\t\tthis.rowsCopy = []\n\n\t\tthis.renderTable()\n\t\tthis.renderAddClassBtn(colorScale)\n\t}\n\n\trenderTable() {\n\t\tthis.dom.tableDiv.select('table').remove()\n\t\tif (!this.rows || this.rows.length === 0) return\n\n\t\t// Deep copy to avoid reference issues\n\t\t// Regenerate on every render\n\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns: this.columns,\n\t\t\trows: this.rows,\n\t\t\tstriped: false,\n\t\t\tshowLines: false,\n\t\t\tsingleMode: false,\n\t\t\tresize: true\n\t\t})\n\n\t\t//editCallback only works with changing the value of the cell\n\t\tfor (const [i, row] of this.rows.entries()) {\n\t\t\tconst deleteBtn = row[0].__td.select('.sja_menuoption')\n\t\t\tdeleteBtn.on('click', () => {\n\t\t\t\tthis.rows.splice(i, 1)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t\t}\n\t}\n\n\tsetDefaultClasses(colorScale) {\n\t\t//TODO default classes from dataset\n\t\tconst rows: TableRow[] = []\n\n\t\tfor (let i = 0; i < 4; i++) {\n\t\t\tthis.getNewClass(colorScale, rows)\n\t\t}\n\n\t\treturn rows\n\t}\n\n\tgetNewClass(colorScale: any, rows: TableRow[]) {\n\t\tconst getName = (i: number) => `New class ${i}`\n\n\t\tlet i = 1\n\t\tlet found = true\n\t\twhile (found) {\n\t\t\tconst checkName = getName(i)\n\t\t\tfound = rows.some(r => r[1].value == checkName)\n\t\t\tif (found) i++\n\t\t}\n\n\t\trows.push([\n\t\t\t{ html: `<div class=\"sja_menuoption\">&times;<div>` },\n\t\t\t{ value: getName(i) },\n\t\t\t{ color: rgb(colorScale(`${i}`)).formatHex() }\n\t\t])\n\t}\n\n\trenderAddClassBtn(colorScale: any) {\n\t\tthis.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Add Class')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin', '10px 0px 0px 0px')\n\t\t\t.on('click', () => {\n\t\t\t\tif (this.rows.length >= 9) {\n\t\t\t\t\talert('Maximum number of classes reached.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tthis.getNewClass(colorScale, this.rows)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t}\n}\n", "import { renderTable } from '#dom'\nimport type { TableColumn, TableRow } from '#dom'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport type { Elem, Div } from '../../../types/d3'\n\nexport class SelectorTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Div | Elem\n\t\tbtnDiv: Div | Elem\n\t}\n\timages: { rows: any[]; cols: any[] }\n\tinteractions: AIProjectAdminInteractions\n\tselectedRows: Set<number>\n\n\tconstructor(\n\t\tholder: Elem,\n\t\tinteractions: AIProjectAdminInteractions,\n\t\timages: { rows: TableRow[]; cols: TableColumn[] }\n\t) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder\n\t\t\t\t.append('div')\n\t\t\t\t.attr('class', '.sjpp-deletable-ai-prjt-admin-div')\n\t\t\t\t.attr('id', 'sjpp-selector-table')\n\t\t\t\t.style('padding', '10px 0'),\n\t\t\tbtnDiv: holder.append('div').attr('class', '.sjpp-deletable-ai-prjt-admin-div').attr('id', 'sjpp-selector-btns')\n\t\t}\n\t\tthis.images = images\n\t\tthis.interactions = interactions\n\t\t/** This is for development\n\t\t * eventually the API request will return which rows should be selected.\n\t\t */\n\t\tthis.selectedRows = new Set(\n\t\t\tthis.images.rows\n\t\t\t\t.filter((_, i) => {\n\t\t\t\t\tif (i < 50) return true\n\t\t\t\t})\n\t\t\t\t.map((_, i) => i)\n\t\t) // Select first 50 rows for prototype\n\n\t\tthis.render()\n\t}\n\n\tprivate render() {\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns: this.images.cols.map(c => ({ ...c, sortable: true })),\n\t\t\trows: this.images.rows,\n\t\t\tselectedRows: Array.from(this.selectedRows),\n\t\t\tstriped: true,\n\t\t\theader: { allowSort: true },\n\t\t\tnoButtonCallback: (i, node) => {\n\t\t\t\tif (node.checked) {\n\t\t\t\t\tthis.selectedRows.add(i)\n\t\t\t\t} else {\n\t\t\t\t\tthis.selectedRows.delete(i)\n\t\t\t\t}\n\t\t\t}\n\t\t})\n\n\t\tthis.renderApplyBtn()\n\t}\n\n\tprivate renderApplyBtn() {\n\t\tconst btn = this.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'block')\n\t\t\t.style('width', 'fit-content')\n\t\t\t.style('margin-left', '5vw')\n\t\t\t.on('click', async () => {\n\t\t\t\tif (!this.selectedRows.size) alert(`No rows selected. Please select some rows.`)\n\t\t\t\t//Don't allow multiple clicks\n\t\t\t\tbtn.attr('disabled', true)\n\n\t\t\t\tconst images = Array.from(this.selectedRows).map(i => `${this.images.rows[i][0].value}.svs`)\n\t\t\t\tawait this.interactions.editProject({\n\t\t\t\t\tproject: {\n\t\t\t\t\t\timages\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tthis.dom.holder.selectAll('*').remove()\n\t\t\t\tthis.interactions.launchViewer(this.dom.holder, images)\n\t\t\t})\n\t}\n}\n", "import { filterInit, getNormalRoot } from '#filter'\nimport { ClassesTableRender } from './ClassesTableRender'\nimport type { Elem } from '../../../types/d3'\n// import { InvalidDataUI, sayerror } from '#dom'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport { SelectorTableRender } from './SelectorTableRender'\n\nexport class CreateProjectRender {\n\tdom: {\n\t\tholder: Elem\n\t\terrorDiv: Elem\n\t\tfilterDiv: Elem\n\t\tclassDiv: Elem\n\t}\n\tapp: any\n\tinteractions: AIProjectAdminInteractions\n\tfilter: any\n\tclassesTable?: ClassesTableRender\n\n\tconstructor(dom: any, app: any, interactions: AIProjectAdminInteractions) {\n\t\tdom.holder.style('padding', '10px 20px').attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\n\t\tthis.dom = {\n\t\t\tholder: dom.holder,\n\t\t\terrorDiv: dom.errorDiv,\n\t\t\tfilterDiv: dom.holder.append('div').attr('id', 'sjpp-ai-prjt-admin-filter-div'),\n\t\t\tclassDiv: dom.holder.append('div').attr('id', 'sjpp-ai-prjt-admin-classes-table').style('padding', '20px 0px')\n\t\t}\n\t\tthis.app = app\n\t\tthis.interactions = interactions\n\t\tthis.filter = null\n\t}\n\n\trender() {\n\t\tthis.renderFilter()\n\t\tthis.classesTable = new ClassesTableRender(this.dom.classDiv)\n\t\tthis.renderApplyBtn()\n\t}\n\n\tprivate renderFilter() {\n\t\tconst filter = filterInit({\n\t\t\tholder: this.dom.filterDiv,\n\t\t\temptyLabel: 'Add filter',\n\t\t\tvocabApi: this.app.vocabApi,\n\t\t\ttermdbConfig: this.app.vocabApi.termdbConfig,\n\t\t\tcallback: filter => {\n\t\t\t\tthis.filter = filter\n\t\t\t}\n\t\t})\n\n\t\tconst state = this.app.getState()\n\t\tconst root = getNormalRoot(state.termfilter.filter)\n\t\tfilter.main(root)\n\t}\n\n\tprivate renderApplyBtn() {\n\t\tconst btn = this.dom.classDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin-left', '200px')\n\t\t\t.on('click', async () => {\n\t\t\t\t/**** Uncomment before production */\n\n\t\t\t\t// const invalidInfo = this.validateInput()\n\t\t\t\t// const numInvalid = invalidInfo.entries?.length\n\t\t\t\t// if (numInvalid) {\n\t\t\t\t// \t/** TODO: allow user to ignore filter error on second click */\n\t\t\t\t// \tif (numInvalid === 1) sayerror(this.dom.errorDiv, invalidInfo.entries[0].reason)\n\t\t\t\t//  else InvalidDataUI.render(this.dom.errorDiv, invalidInfo)\n\t\t\t\t// \treturn\n\t\t\t\t// }\n\t\t\t\tbtn.attr('disabled', true) //Don't allow multiple clicks\n\n\t\t\t\tconst selections: any = await this.interactions.getFilteredImages(this.filter)\n\t\t\t\tif (this.filter && (selections.status != 'ok' || selections.data.length === 0)) {\n\t\t\t\t\talert('No images match your filter criteria.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\n\t\t\t\tawait this.interactions.addProject({\n\t\t\t\t\tproject: {\n\t\t\t\t\t\tfilter: this.filter,\n\t\t\t\t\t\tclasses: this.classesTable!.rows.map((row, i) => {\n\t\t\t\t\t\t\treturn { label: row[1].value, color: row[2].color, key_shortcut: `Digit${i + 1}` }\n\t\t\t\t\t\t})\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tthis.dom.holder.selectAll('*').remove()\n\t\t\t\tnew SelectorTableRender(this.dom.holder, this.interactions, selections.data)\n\t\t\t})\n\t}\n\n\t/**** Uncomment before production */\n\t// private validateInput() {\n\t// \tconst invalidInfo = {\n\t// \t\tentries: [] as { dataType: string; reason: string }[],\n\t// \t\terrorMsg: 'Please clear all \"Data type: Class\" errors before applying changes.'\n\t// \t}\n\n\t// \t//Show user error if no filter is defined.\n\t// \tif (!this.filter) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Filter', reason: 'No filter defined. Did you mean to add a filter?' })\n\t// \t}\n\t// \t//Check if all classes were deleted\n\t// \tconst classes = this.classesTable?.rows.map(row => row[1].value) || []\n\t// \tif (classes.length === 0) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: 'No classes defined. Did you mean to add a class?' })\n\t// \t}\n\t// \t//Check to see if any class is still a default class\n\t// \tconst unchangedClasses =\n\t// \t\tthis.classesTable?.rows\n\t// \t\t\t.filter(row => (row[1]?.value as string)?.startsWith('New class'))\n\t// \t\t\t.map(r => r[1]?.value as string) || []\n\t// \tfor (const c of unchangedClasses) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: `${c} is the default class name. Please rename.` })\n\t// \t}\n\n\t// \treturn invalidInfo\n\t// }\n}\n", "import { getCompInit, copyMerge, type RxComponent } from '#rx'\nimport { PlotBase } from '../PlotBase'\nimport type { MassState } from '#mass/types/mass'\nimport { getDefaultAIProjectAdminSettings } from './defaults'\nimport { ProjectReposity } from './repo/ProjectReposity'\nimport { ProjectAdminRender } from './view/ProjectAdminRender'\nimport { AIProjectAdminInteractions } from './interactions/AIProjectAdminInteractions'\nimport { CreateProjectRender } from './view/CreateProjectRender'\nimport { sayerror } from '#dom'\n\n/** This plot supports training AI models.\n * The UI allows users to create and manage projects. */\n\nclass AIProjectAdmin extends PlotBase implements RxComponent {\n\tstatic type = 'AIProjectAdmin'\n\tpublic type = 'AIProjectAdmin'\n\tprjtRepo: ProjectReposity\n\tprojects?: any[]\n\tprjtAdminUI?: ProjectAdminRender\n\tinteractions?: AIProjectAdminInteractions\n\n\tdom!: {\n\t\t[name: string]: any\n\t}\n\n\tconstructor(opts: any, api) {\n\t\tsuper(opts, api)\n\t\tthis.opts = opts\n\t\tthis.dom = {\n\t\t\tholder: opts.holder,\n\t\t\terrorDiv: opts.holder.append('div').style('margin', '3px').attr('class', 'sjpp-ai-prjt-admin-error')\n\t\t}\n\t\tif (opts.header) this.dom.header = opts.header\n\n\t\tthis.prjtRepo = new ProjectReposity()\n\t}\n\n\tgetState(appState: MassState) {\n\t\tconst config = appState.plots.find((p: any) => p.id === this.id)\n\t\tif (!config) {\n\t\t\tthrow `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`\n\t\t}\n\t\treturn {\n\t\t\tconfig,\n\t\t\tvocab: appState.vocab,\n\t\t\tfilter: appState.termfilter.filter\n\t\t}\n\t}\n\n\tasync init(appState: MassState) {\n\t\tthis.interactions = new AIProjectAdminInteractions(this.app, this.id, this.prjtRepo)\n\n\t\ttry {\n\t\t\tthis.projects = await this.prjtRepo.getProjects(appState.vocab.genome, appState.vocab.dslabel)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error initializing AIProjectAdmin:', e)\n\t\t\tthrow e\n\t\t}\n\t\tthis.prjtAdminUI = new ProjectAdminRender(this.dom, this.projects, this.interactions)\n\t\tthis.prjtAdminUI.renderProjectAdmin()\n\t}\n\n\tasync main() {\n\t\tconst state = structuredClone(this.state)\n\t\tconst config = state.config\n\t\tif (config.chartType != this.type) return\n\t\tconst project = config.settings.project\n\t\tif (!project) return\n\n\t\tif (!this.interactions) throw new Error('AIProjectAdminInteractions not initialized')\n\n\t\tthis.dom.holder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\n\t\tif (project.type === 'new') {\n\t\t\tconst terms = await this.prjtRepo.getTerms(this.app)\n\t\t\tif (!terms || terms.length === 0) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'No metadata found.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tconst createProjectRender = new CreateProjectRender(this.dom, this.app, this.interactions)\n\t\t\tcreateProjectRender.render()\n\t\t}\n\n\t\t//launching project from embedded runpp()\n\t\tif (project.type == 'existing') {\n\t\t\tif (!project.name) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'Project name not provided.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tif (!project.id) {\n\t\t\t\tconst existingProject = this.projects?.find(p => p.name === project.name)\n\t\t\t\tif (!existingProject) {\n\t\t\t\t\tsayerror(this.dom.errorDiv, `Project ${project.name} not found.`)\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t//No need to call dispatch. Save to the state and call the wsi viewer.\n\t\t\t\tawait this.app.save({\n\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\tid: this.id,\n\t\t\t\t\tconfig: { settings: { project: { id: existingProject.id } } }\n\t\t\t\t})\n\t\t\t}\n\t\t\tthis.interactions.launchViewer(this.dom.holder, [])\n\t\t}\n\t}\n}\n\nexport const aiProjectAdminInit = getCompInit(AIProjectAdmin)\nexport const componentInit = aiProjectAdminInit\n\nexport async function getPlotConfig(opts: any) {\n\tconst config = {\n\t\tchartType: 'AIProjectAdmin',\n\t\tsubfolder: 'aiProjectAdmin',\n\t\textension: 'ts',\n\t\tsettings: getDefaultAIProjectAdminSettings(opts.overrides)\n\t}\n\tif (opts.settings?.project && !opts.settings?.project?.type) {\n\t\t//If passing project from embedded runpp(), force type\n\t\topts.settings.project.type = 'existing'\n\t}\n\treturn copyMerge(config, opts)\n}\n"],
-  "mappings": 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+  "sourcesContent": ["import type Settings from './Settings'\n\nexport function getDefaultAIProjectAdminSettings(overrides = {}): Settings {\n\tconst defaults: Settings = {}\n\treturn Object.assign(defaults, overrides)\n}\n", "import { dofetch2, dofetch3 } from '#common/dofetch'\nimport type { AIProjectAdminRequest, AIProjectAdminResponse } from '#types'\n\nexport class ProjectReposity {\n\tpublic async getProjects(genome: string, dslabel: string): Promise<string[]> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'list'\n\t\t}\n\t\ttry {\n\t\t\tconst response = await dofetch3('aiProjectAdmin', { body })\n\t\t\treturn response || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/** Gets the image paths from db */\n\tpublic async getImagePaths(genome: string, dslabel: string, project: any): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'images',\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\treturn await dofetch3('aiProjectAdmin', { body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching images:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\tpublic async updateProject(_body: any, method: string): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = Object.assign({}, _body, { for: 'admin' })\n\t\ttry {\n\t\t\tif (method == 'PUT' || method == 'DELETE') {\n\t\t\t\t/** 3rd argument is for serverData caching.\n\t\t\t\t * Do not cache put or delete requests */\n\t\t\t\treturn await dofetch2('aiProjectAdmin', { method, body }, {})\n\t\t\t}\n\t\t\treturn await dofetch3('aiProjectAdmin', { method, body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t//TODO: Will need a method to call metadata API, then build dictionary\n\tasync getTerms(app: any): Promise<any> {\n\t\tconst root = { id: '__root', name: 'root', __tree_isroot: true }\n\t\ttry {\n\t\t\tawait app.vocabApi.buildAdHocDictionary()\n\t\t\tconst terms = await app.vocabApi.getTermChildren(root, [])\n\t\t\treturn terms || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error getting terms:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n}\n", "import { renderTable, sayerror } from '#dom'\nimport { debounce } from 'debounce'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\n\nexport class ProjectAdminRender {\n\tdom: any\n\tprojects: any[]\n\tinteractions: AIProjectAdminInteractions\n\n\tconstructor(dom: any, projects: any[], interactions: AIProjectAdminInteractions) {\n\t\tthis.dom = dom\n\t\tthis.projects = projects //returns as [{ value: 'Project1' }, { value: 'Project2' }, ...]\n\t\tthis.interactions = interactions\n\t}\n\n\t/** Renders project administration UI, allowing users to\n\t * create new projects or edit existing ones.*/\n\trenderProjectAdmin() {\n\t\tconst projectDiv = this.dom.holder\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-projects')\n\t\t\t.attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\t\tthis.renderCreateProject(projectDiv)\n\t\tthis.renderProjectSelection(projectDiv)\n\t}\n\n\t/** Users submit a new project name before sample\n\t * filtering UI to finalize project creation.*/\n\trenderCreateProject(projectDiv) {\n\t\tconst newProjectDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-new').style('padding', '10px')\n\n\t\tconst input = newProjectDiv\n\t\t\t.append('input')\n\t\t\t.attr('id', 'sjpp-new-project-name')\n\t\t\t.attr('display', 'inline-block')\n\t\t\t.attr('placeholder', 'New project name')\n\n\t\tconst button = newProjectDiv\n\t\t\t.append('div')\n\t\t\t.text('Create Project')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.property('disabled', true)\n\t\t\t.on('click', async () => {\n\t\t\t\tconst projectName = input.property('value')\n\t\t\t\tconst prjtNameLen = projectName.trim().length\n\n\t\t\t\tconst showError = (msg: string) => {\n\t\t\t\t\tsayerror(this.dom.errorDiv, msg)\n\t\t\t\t\tinput.property('value', '')\n\t\t\t\t\tbutton.property('disabled', true)\n\n\t\t\t\t\t//Show error for 3 seconds, then remove\n\t\t\t\t\tsetTimeout(() => {\n\t\t\t\t\t\tthis.dom.errorDiv.selectAll('*').remove()\n\t\t\t\t\t}, 3000)\n\t\t\t\t}\n\n\t\t\t\tif (prjtNameLen == 0) {\n\t\t\t\t\t//Shouldn't be necessary because of the debouncer\n\t\t\t\t\treturn showError('Project name cannot be empty')\n\t\t\t\t}\n\t\t\t\tif (prjtNameLen > 50 || prjtNameLen < 3) {\n\t\t\t\t\treturn showError('Project name must be between 3 and 50 characters')\n\t\t\t\t}\n\t\t\t\tconst notUnique = this.projects.some((p: any) => p.name === projectName.trim())\n\t\t\t\tif (notUnique) {\n\t\t\t\t\treturn showError(`Project name '${projectName}' already exists`)\n\t\t\t\t}\n\n\t\t\t\t//Show project name in sandbox header\n\t\t\t\tif (this.dom.header) this.dom.header.text(`Project: ${projectName}`)\n\n\t\t\t\t//calls main() to trigger CreateProjectRender\n\t\t\t\tawait this.interactions.appDispatchEdit({ settings: { project: { name: projectName, type: 'new' } } })\n\t\t\t})\n\n\t\tinput.on('keydown', () => {\n\t\t\tconst debouncer = () => {\n\t\t\t\tbutton.property('disabled', input.property('value').length == 0)\n\t\t\t}\n\t\t\tdebounce(debouncer, 300)()\n\t\t})\n\t}\n\n\t/** Users may select an existing project from a table\n\t * returned for the db to edit or delete, depending\n\t * on user roles.*/\n\trenderProjectSelection(projectDiv) {\n\t\tif (!this.projects.length) return\n\n\t\tconst tableDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-table').style('padding', '10px')\n\t\tconst columns = [{ label: 'Project', sortable: true }]\n\n\t\tconst columnButtons = [\n\t\t\t{\n\t\t\t\ttext: 'Edit',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\t//_ = event, __ = idx\n\t\t\t\tcallback: async (_, idx) => {\n\t\t\t\t\t/** TODO: open wsisamples plot ||\n\t\t\t\t\t *  get project details rather than edit the db */\n\t\t\t\t\tconst project = this.projects[idx]\n\t\t\t\t\tawait this.interactions.appDispatchEdit({ settings: { project } })\n\t\t\t\t\t// remove 'dev' for production\n\t\t\t\t\tthis.interactions.launchViewer(this.dom.holder, [])\n\t\t\t\t}\n\t\t\t},\n\t\t\t{\n\t\t\t\t//TODO: Add logic for admins only once user roles are implemented\n\t\t\t\t//Leave here for development\n\t\t\t\ttext: 'Delete',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\tcallback: (_, i) => {\n\t\t\t\t\tconst project = this.projects[i]\n\t\t\t\t\tthis.interactions.deleteProject(project)\n\n\t\t\t\t\t//Update UI after deletion. Maybe cleaner way to handle this?\n\t\t\t\t\t//Maybe app.dispatch and rerender instead?\n\t\t\t\t\tthis.projects.splice(i, 1)\n\t\t\t\t\t//Remove the table from the projectDiv and re-render\n\t\t\t\t\tprojectDiv.select('.sjpp-project-select-table').remove()\n\t\t\t\t\tthis.renderProjectSelection(projectDiv)\n\t\t\t\t}\n\t\t\t}\n\t\t]\n\n\t\trenderTable({\n\t\t\tdiv: tableDiv,\n\t\t\trows: this.projects.map((p: any) => {\n\t\t\t\treturn [{ value: p.name }]\n\t\t\t}),\n\t\t\theader: {\n\t\t\t\tallowSort: true\n\t\t\t},\n\t\t\tcolumns,\n\t\t\tsingleMode: true,\n\t\t\tcolumnButtons\n\t\t})\n\t}\n}\n", "import type { ProjectReposity } from '../repo/ProjectReposity'\nimport type { AIProjectAdminResponse } from '#types'\n\nexport class AIProjectAdminInteractions {\n\tapp: any\n\tid: string\n\tgenome: string\n\tdslabel: string\n\tprjtRepo: ProjectReposity\n\n\tconstructor(app: any, id: string, prjtRepo: ProjectReposity) {\n\t\tthis.app = app\n\t\tthis.id = id\n\t\tthis.genome = app.vocabApi.vocab.genome\n\t\tthis.dslabel = app.vocabApi.vocab.dslabel\n\t\tthis.prjtRepo = prjtRepo\n\t}\n\n\tasync addProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst projectObject = Object.assign({}, config.settings.project, opts.project)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: projectObject\n\t\t}\n\t\ttry {\n\t\t\tawait this.prjtRepo.updateProject(body, 'PUT')\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error adding project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync editProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst project = Object.assign(\n\t\t\t{},\n\t\t\tconfig.settings.project,\n\t\t\t{\n\t\t\t\ttype: 'edit'\n\t\t\t},\n\t\t\topts.project\n\t\t)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\tconst res = (await this.prjtRepo.updateProject(body, 'POST')) as any\n\t\t\tif (!project.id) project.id = res.projectId\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error editing project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t\tawait this.appDispatchEdit({ settings: { project } }, config)\n\t}\n\n\tasync deleteProject(project: { value: string; id: number }): Promise<void> {\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: {\n\t\t\t\tname: project.value,\n\t\t\t\tid: project.id\n\t\t\t}\n\t\t}\n\n\t\ttry {\n\t\t\tawait this.prjtRepo.updateProject(body, 'DELETE')\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error deleting project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync getFilteredImages(filter: any): Promise<AIProjectAdminResponse> {\n\t\tconst config = this.getConfig()\n\t\treturn await this.app.vocabApi.getFilteredAiImages(config.settings.project, filter)\n\t}\n\n\tasync launchViewer(holder: any, _images?: string[]): Promise<void> {\n\t\tholder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\n\t\tconst config = this.getConfig()\n\t\tlet images: string[] = []\n\n\t\tif (_images && _images.length > 0) {\n\t\t\timages = _images\n\t\t} else {\n\t\t\tconst response: AIProjectAdminResponse = await this.prjtRepo.getImagePaths(\n\t\t\t\tthis.genome,\n\t\t\t\tthis.dslabel,\n\t\t\t\tconfig.settings.project\n\t\t\t)\n\t\t\timages = response.images\n\t\t}\n\n\t\tconst wsiViewer = await import('#plots/wsiviewer/plot.wsi.js')\n\t\twsiViewer.default(this.dslabel, holder, { name: this.genome }, null, config.settings.project.id, images, true)\n\t}\n\n\tpublic async appDispatchEdit(settings: any, config: any = {}): Promise<void> {\n\t\tif (!config?.settings) {\n\t\t\tconfig = this.getConfig()\n\t\t\tif (!config) throw new Error(`No plot with id='${this.id}' found.`)\n\t\t}\n\n\t\tawait this.app.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: this.id,\n\t\t\tconfig: Object.assign(settings, config.settings)\n\t\t})\n\t}\n\n\tprivate getConfig(): any {\n\t\treturn this.app.getState().plots.find((p: any) => p.id === this.id)\n\t}\n}\n", "import { renderTable } from '#dom'\nimport { getColors } from '#shared/common.js'\nimport { rgb } from 'd3-color'\nimport type { TableColumn, TableRow } from '#dom'\nimport type { Elem } from '../../../types/d3'\n\nexport class ClassesTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Elem\n\t\tbtnDiv: Elem\n\t}\n\tcolumns: TableColumn[]\n\trows: TableRow[]\n\t/** table.ts updates this.rows and cell values in editCallback\n\t * Save a copy to check for duplicates when editing class names.*/\n\trowsCopy: TableRow[]\n\n\tconstructor(holder: any, rows?: TableRow[]) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder.append('div'),\n\t\t\tbtnDiv: holder.append('div')\n\t\t}\n\t\tthis.columns = [\n\t\t\t{ label: '' }, // Empty for the delete icon\n\t\t\t{\n\t\t\t\tlabel: 'NAME',\n\t\t\t\teditCallback: (rowIdx, cell) => {\n\t\t\t\t\tconst newValue = (cell.value as string).trim()\n\t\t\t\t\tconst foundSameName = this.rows.some((r, i) => newValue === (r[1].value as string).trim() && i !== rowIdx)\n\t\t\t\t\tif (foundSameName) {\n\t\t\t\t\t\talert(`Class name '${newValue}' already exists`)\n\t\t\t\t\t\t/** Reset to original value\n\t\t\t\t\t\t * renderTable() updates arg.rows and cell value before this callback.\n\t\t\t\t\t\t * This resets the value to the original value */\n\t\t\t\t\t\tcell.value = this.rowsCopy[rowIdx][1].value\n\t\t\t\t\t\tcell.__td.text(this.rowsCopy[rowIdx][1].value)\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\t\t\t\t}\n\t\t\t},\n\t\t\t{ label: 'COLOR' }\n\t\t]\n\t\tconst colorScale = getColors(5)\n\t\tthis.rows = rows || this.setDefaultClasses(colorScale)\n\t\tthis.rowsCopy = []\n\n\t\tthis.renderTable()\n\t\tthis.renderAddClassBtn(colorScale)\n\t}\n\n\trenderTable() {\n\t\tthis.dom.tableDiv.select('table').remove()\n\t\tif (!this.rows || this.rows.length === 0) return\n\n\t\t// Deep copy to avoid reference issues\n\t\t// Regenerate on every render\n\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns: this.columns,\n\t\t\trows: this.rows,\n\t\t\tstriped: false,\n\t\t\tshowLines: false,\n\t\t\tsingleMode: false,\n\t\t\tresize: true\n\t\t})\n\n\t\t//editCallback only works with changing the value of the cell\n\t\tfor (const [i, row] of this.rows.entries()) {\n\t\t\tconst deleteBtn = row[0].__td.select('.sja_menuoption')\n\t\t\tdeleteBtn.on('click', () => {\n\t\t\t\tthis.rows.splice(i, 1)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t\t}\n\t}\n\n\tsetDefaultClasses(colorScale) {\n\t\t//TODO default classes from dataset\n\t\tconst rows: TableRow[] = []\n\n\t\tfor (let i = 0; i < 4; i++) {\n\t\t\tthis.getNewClass(colorScale, rows)\n\t\t}\n\n\t\treturn rows\n\t}\n\n\tgetNewClass(colorScale: any, rows: TableRow[]) {\n\t\tconst getName = (i: number) => `New class ${i}`\n\n\t\tlet i = 1\n\t\tlet found = true\n\t\twhile (found) {\n\t\t\tconst checkName = getName(i)\n\t\t\tfound = rows.some(r => r[1].value == checkName)\n\t\t\tif (found) i++\n\t\t}\n\n\t\trows.push([\n\t\t\t{ html: `<div class=\"sja_menuoption\">&times;<div>` },\n\t\t\t{ value: getName(i) },\n\t\t\t{ color: rgb(colorScale(`${i}`)).formatHex() }\n\t\t])\n\t}\n\n\trenderAddClassBtn(colorScale: any) {\n\t\tthis.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Add Class')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin', '10px 0px 0px 0px')\n\t\t\t.on('click', () => {\n\t\t\t\tif (this.rows.length >= 9) {\n\t\t\t\t\talert('Maximum number of classes reached.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tthis.getNewClass(colorScale, this.rows)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t}\n}\n", "import { renderTable } from '#dom'\nimport type { TableColumn, TableRow } from '#dom'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport type { Elem, Div } from '../../../types/d3'\n\nexport class SelectorTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Div | Elem\n\t\tbtnDiv: Div | Elem\n\t}\n\timages: { rows: any[]; cols: any[] }\n\tinteractions: AIProjectAdminInteractions\n\tselectedRows: Set<number>\n\n\tconstructor(\n\t\tholder: Elem,\n\t\tinteractions: AIProjectAdminInteractions,\n\t\timages: { rows: TableRow[]; cols: TableColumn[] }\n\t) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder\n\t\t\t\t.append('div')\n\t\t\t\t.attr('class', '.sjpp-deletable-ai-prjt-admin-div')\n\t\t\t\t.attr('id', 'sjpp-selector-table')\n\t\t\t\t.style('padding', '10px 0'),\n\t\t\tbtnDiv: holder.append('div').attr('class', '.sjpp-deletable-ai-prjt-admin-div').attr('id', 'sjpp-selector-btns')\n\t\t}\n\t\tthis.images = images\n\t\tthis.interactions = interactions\n\t\t/** This is for development\n\t\t * eventually the API request will return which rows should be selected.\n\t\t */\n\t\tthis.selectedRows = new Set(\n\t\t\tthis.images.rows\n\t\t\t\t.filter((_, i) => {\n\t\t\t\t\tif (i < 50) return true\n\t\t\t\t})\n\t\t\t\t.map((_, i) => i)\n\t\t) // Select first 50 rows for prototype\n\n\t\tthis.render()\n\t}\n\n\tprivate render() {\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns: this.images.cols.map(c => ({ ...c, sortable: true })),\n\t\t\trows: this.images.rows,\n\t\t\tselectedRows: Array.from(this.selectedRows),\n\t\t\tstriped: true,\n\t\t\theader: { allowSort: true },\n\t\t\tnoButtonCallback: (i, node) => {\n\t\t\t\tif (node.checked) {\n\t\t\t\t\tthis.selectedRows.add(i)\n\t\t\t\t} else {\n\t\t\t\t\tthis.selectedRows.delete(i)\n\t\t\t\t}\n\t\t\t}\n\t\t})\n\n\t\tthis.renderApplyBtn()\n\t}\n\n\tprivate renderApplyBtn() {\n\t\tconst btn = this.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'block')\n\t\t\t.style('width', 'fit-content')\n\t\t\t.style('margin-left', '5vw')\n\t\t\t.on('click', async () => {\n\t\t\t\tif (!this.selectedRows.size) alert(`No rows selected. Please select some rows.`)\n\t\t\t\t//Don't allow multiple clicks\n\t\t\t\tbtn.attr('disabled', true)\n\n\t\t\t\tconst images = Array.from(this.selectedRows).map(i => `${this.images.rows[i][0].value}.svs`)\n\t\t\t\tawait this.interactions.editProject({\n\t\t\t\t\tproject: {\n\t\t\t\t\t\timages\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tthis.dom.holder.selectAll('*').remove()\n\t\t\t\tthis.interactions.launchViewer(this.dom.holder, images)\n\t\t\t})\n\t}\n}\n", "import { filterInit, getNormalRoot } from '#filter'\nimport { ClassesTableRender } from './ClassesTableRender'\nimport type { Elem } from '../../../types/d3'\n// import { InvalidDataUI, sayerror } from '#dom'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport { SelectorTableRender } from './SelectorTableRender'\n\nexport class CreateProjectRender {\n\tdom: {\n\t\tholder: Elem\n\t\terrorDiv: Elem\n\t\tfilterDiv: Elem\n\t\tclassDiv: Elem\n\t}\n\tapp: any\n\tinteractions: AIProjectAdminInteractions\n\tfilter: any\n\tclassesTable?: ClassesTableRender\n\n\tconstructor(dom: any, app: any, interactions: AIProjectAdminInteractions) {\n\t\tdom.holder.style('padding', '10px 20px').attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\n\t\tthis.dom = {\n\t\t\tholder: dom.holder,\n\t\t\terrorDiv: dom.errorDiv,\n\t\t\tfilterDiv: dom.holder.append('div').attr('id', 'sjpp-ai-prjt-admin-filter-div'),\n\t\t\tclassDiv: dom.holder.append('div').attr('id', 'sjpp-ai-prjt-admin-classes-table').style('padding', '20px 0px')\n\t\t}\n\t\tthis.app = app\n\t\tthis.interactions = interactions\n\t\tthis.filter = null\n\t}\n\n\trender() {\n\t\tthis.renderFilter()\n\t\tthis.classesTable = new ClassesTableRender(this.dom.classDiv)\n\t\tthis.renderApplyBtn()\n\t}\n\n\tprivate renderFilter() {\n\t\tconst filter = filterInit({\n\t\t\tholder: this.dom.filterDiv,\n\t\t\temptyLabel: 'Add filter',\n\t\t\tvocabApi: this.app.vocabApi,\n\t\t\ttermdbConfig: this.app.vocabApi.termdbConfig,\n\t\t\tcallback: filter => {\n\t\t\t\tthis.filter = filter\n\t\t\t}\n\t\t})\n\n\t\tconst state = this.app.getState()\n\t\tconst root = getNormalRoot(state.termfilter.filter)\n\t\tfilter.main(root)\n\t}\n\n\tprivate renderApplyBtn() {\n\t\tconst btn = this.dom.classDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin-left', '200px')\n\t\t\t.on('click', async () => {\n\t\t\t\t/**** Uncomment before production */\n\n\t\t\t\t// const invalidInfo = this.validateInput()\n\t\t\t\t// const numInvalid = invalidInfo.entries?.length\n\t\t\t\t// if (numInvalid) {\n\t\t\t\t// \t/** TODO: allow user to ignore filter error on second click */\n\t\t\t\t// \tif (numInvalid === 1) sayerror(this.dom.errorDiv, invalidInfo.entries[0].reason)\n\t\t\t\t//  else InvalidDataUI.render(this.dom.errorDiv, invalidInfo)\n\t\t\t\t// \treturn\n\t\t\t\t// }\n\t\t\t\tbtn.attr('disabled', true) //Don't allow multiple clicks\n\n\t\t\t\tconst selections: any = await this.interactions.getFilteredImages(this.filter)\n\t\t\t\tif (this.filter && (selections.status != 'ok' || selections.data.length === 0)) {\n\t\t\t\t\talert('No images match your filter criteria.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\n\t\t\t\tawait this.interactions.addProject({\n\t\t\t\t\tproject: {\n\t\t\t\t\t\tfilter: this.filter,\n\t\t\t\t\t\tclasses: this.classesTable!.rows.map((row, i) => {\n\t\t\t\t\t\t\treturn { label: row[1].value, color: row[2].color, key_shortcut: `Digit${i + 1}` }\n\t\t\t\t\t\t})\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tthis.dom.holder.selectAll('*').remove()\n\t\t\t\tnew SelectorTableRender(this.dom.holder, this.interactions, selections.data)\n\t\t\t})\n\t}\n\n\t/**** Uncomment before production */\n\t// private validateInput() {\n\t// \tconst invalidInfo = {\n\t// \t\tentries: [] as { dataType: string; reason: string }[],\n\t// \t\terrorMsg: 'Please clear all \"Data type: Class\" errors before applying changes.'\n\t// \t}\n\n\t// \t//Show user error if no filter is defined.\n\t// \tif (!this.filter) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Filter', reason: 'No filter defined. Did you mean to add a filter?' })\n\t// \t}\n\t// \t//Check if all classes were deleted\n\t// \tconst classes = this.classesTable?.rows.map(row => row[1].value) || []\n\t// \tif (classes.length === 0) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: 'No classes defined. Did you mean to add a class?' })\n\t// \t}\n\t// \t//Check to see if any class is still a default class\n\t// \tconst unchangedClasses =\n\t// \t\tthis.classesTable?.rows\n\t// \t\t\t.filter(row => (row[1]?.value as string)?.startsWith('New class'))\n\t// \t\t\t.map(r => r[1]?.value as string) || []\n\t// \tfor (const c of unchangedClasses) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: `${c} is the default class name. Please rename.` })\n\t// \t}\n\n\t// \treturn invalidInfo\n\t// }\n}\n", "import { getCompInit, copyMerge, type RxComponent } from '#rx'\nimport { PlotBase } from '../PlotBase'\nimport type { MassState } from '#mass/types/mass'\nimport { getDefaultAIProjectAdminSettings } from './defaults'\nimport { ProjectReposity } from './repo/ProjectReposity'\nimport { ProjectAdminRender } from './view/ProjectAdminRender'\nimport { AIProjectAdminInteractions } from './interactions/AIProjectAdminInteractions'\nimport { CreateProjectRender } from './view/CreateProjectRender'\nimport { sayerror } from '#dom'\n\n/** This plot supports training AI models.\n * The UI allows users to create and manage projects. */\n\nclass AIProjectAdmin extends PlotBase implements RxComponent {\n\tstatic type = 'AIProjectAdmin'\n\tpublic type = 'AIProjectAdmin'\n\tprjtRepo: ProjectReposity\n\tprojects?: any[]\n\tprjtAdminUI?: ProjectAdminRender\n\tinteractions?: AIProjectAdminInteractions\n\n\tdom!: {\n\t\t[name: string]: any\n\t}\n\n\tconstructor(opts: any, api) {\n\t\tsuper(opts, api)\n\t\tthis.opts = opts\n\t\tthis.dom = {\n\t\t\tholder: opts.holder,\n\t\t\terrorDiv: opts.holder.append('div').style('margin', '3px').attr('class', 'sjpp-ai-prjt-admin-error')\n\t\t}\n\t\tif (opts.header) this.dom.header = opts.header\n\n\t\tthis.prjtRepo = new ProjectReposity()\n\t}\n\n\tgetState(appState: MassState) {\n\t\tconst config = appState.plots.find((p: any) => p.id === this.id)\n\t\tif (!config) {\n\t\t\tthrow `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`\n\t\t}\n\t\treturn {\n\t\t\tconfig,\n\t\t\tvocab: appState.vocab,\n\t\t\tfilter: appState.termfilter.filter\n\t\t}\n\t}\n\n\tasync init(appState: MassState) {\n\t\tthis.interactions = new AIProjectAdminInteractions(this.app, this.id, this.prjtRepo)\n\n\t\ttry {\n\t\t\tthis.projects = await this.prjtRepo.getProjects(appState.vocab.genome, appState.vocab.dslabel)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error initializing AIProjectAdmin:', e)\n\t\t\tthrow e\n\t\t}\n\t\tthis.prjtAdminUI = new ProjectAdminRender(this.dom, this.projects, this.interactions)\n\t\tthis.prjtAdminUI.renderProjectAdmin()\n\t}\n\n\tasync main() {\n\t\tconst state = structuredClone(this.state)\n\t\tconst config = state.config\n\t\tif (config.chartType != this.type) return\n\t\tconst project = config.settings.project\n\t\tif (!project) return\n\n\t\tif (!this.interactions) throw new Error('AIProjectAdminInteractions not initialized')\n\n\t\tthis.dom.holder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\n\t\tif (project.type === 'new') {\n\t\t\tconst terms = await this.prjtRepo.getTerms(this.app)\n\t\t\tif (!terms || terms.length === 0) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'No metadata found.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tconst createProjectRender = new CreateProjectRender(this.dom, this.app, this.interactions)\n\t\t\tcreateProjectRender.render()\n\t\t}\n\n\t\t//launching project from embedded runpp()\n\t\tif (project.type == 'existing') {\n\t\t\tif (!project.name) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'Project name not provided.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tif (!project.id) {\n\t\t\t\tconst existingProject = this.projects?.find(p => p.name === project.name)\n\t\t\t\tif (!existingProject) {\n\t\t\t\t\tsayerror(this.dom.errorDiv, `Project ${project.name} not found.`)\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t//No need to call dispatch. Save to the state and call the wsi viewer.\n\t\t\t\tawait this.app.save({\n\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\tid: this.id,\n\t\t\t\t\tconfig: { settings: { project: { id: existingProject.id } } }\n\t\t\t\t})\n\t\t\t}\n\t\t\tthis.interactions.launchViewer(this.dom.holder, [])\n\t\t}\n\t}\n}\n\nexport const aiProjectAdminInit = getCompInit(AIProjectAdmin)\nexport const componentInit = aiProjectAdminInit\n\nexport async function getPlotConfig(opts: any) {\n\tconst config = {\n\t\tchartType: 'AIProjectAdmin',\n\t\tsubfolder: 'aiProjectAdmin',\n\t\textension: 'ts',\n\t\thidePlotFilter: true, //Disable the filter in the sandbox header\n\t\tsettings: getDefaultAIProjectAdminSettings(opts.overrides)\n\t}\n\tif (opts.settings?.project && !opts.settings?.project?.type) {\n\t\t//If passing project from embedded runpp(), force type\n\t\topts.settings.project.type = 'existing'\n\t}\n\treturn copyMerge(config, opts)\n}\n"],
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   "names": ["i", "filter"]
 }

package/dist/{AppHeader-FRAPKPBD.js → AppHeader-42YOP7ML.js} RENAMED Viewed

@@ -1,38 +1,38 @@
 import {
   makeButton,
   openSandbox
-} from "./chunk-GDNRC2ZH.js";
+} from "./chunk-TTI5JTLY.js";
 import {
   get_tklst
-} from "./chunk-KVDH2XXF.js";
-import "./chunk-ENXCRXKG.js";
-import "./chunk-AHAQH5KG.js";
+} from "./chunk-7SDUB2F4.js";
+import "./chunk-ZJKPAW5V.js";
+import "./chunk-DPIOOBXD.js";
 import "./chunk-PRZWSBMA.js";
 import "./chunk-MKAF2BHB.js";
 import {
   urlmap_default
 } from "./chunk-RS3G3HE7.js";
-import "./chunk-H6ULX2H6.js";
+import "./chunk-R34ZHERI.js";
 import {
   block_init_default
-} from "./chunk-HNOT32BK.js";
+} from "./chunk-N5L2ZEUM.js";
 import {
   InputSearch,
   first_genetrack_tolist,
   newSandboxDiv,
   sayerror,
   throwMsgWithFilePathAndFnName
-} from "./chunk-W4TUKJCB.js";
+} from "./chunk-CII543O5.js";
 import {
   string2pos
 } from "./chunk-HJ6L54YS.js";
 import {
   dofetch3
-} from "./chunk-WE3EAKHW.js";
-import "./chunk-WP3DXIXL.js";
-import "./chunk-RY7CVONT.js";
+} from "./chunk-MGCBVRAS.js";
+import "./chunk-DUTCGKL3.js";
+import "./chunk-5MWX5HUZ.js";
 import "./chunk-IQIXGTQV.js";
-import "./chunk-P6LA7M67.js";
+import "./chunk-BXU7CROE.js";
 import {
   defaultcolor
 } from "./chunk-FIZTETYY.js";
@@ -212,7 +212,7 @@ async function findgene2paint(str, app, genomename, jwt) {
       debugmode: app.debugmode
     };
     first_genetrack_tolist(g, par2.tklst);
-    import("./block-XRU4XPLC.js").then((b) => new b.Block(par2)).catch((err) => {
+    import("./block-W6LJWBTF.js").then((b) => new b.Block(par2)).catch((err) => {
       app.error0(err);
     });
     return;
@@ -798,7 +798,7 @@ var AppHeader = class _AppHeader {
         debugmode: app.debugmode
       };
       first_genetrack_tolist(g, par.tklst);
-      import("./block-XRU4XPLC.js").then((b) => new b.Block(par));
+      import("./block-W6LJWBTF.js").then((b) => new b.Block(par));
       app.drawer.dispatch({ type: "is_apps_btn_active", value: false });
     });
     return g_browser_btn;
@@ -811,4 +811,4 @@ var AppHeader = class _AppHeader {
 export {
   AppHeader
 };
-//# sourceMappingURL=AppHeader-FRAPKPBD.js.map
+//# sourceMappingURL=AppHeader-42YOP7ML.js.map

package/dist/{BoxPlot-UZHQTYQD.js → BoxPlot-XCHFMSFO.js} RENAMED Viewed

@@ -3,20 +3,21 @@ import {
   componentInit,
   getDefaultBoxplotSettings,
   getPlotConfig
-} from "./chunk-IGJ5C7KV.js";
-import "./chunk-2II4HO5I.js";
-import "./chunk-KWUHKD3R.js";
-import "./chunk-FFBSCYRY.js";
-import "./chunk-QPFAE6LH.js";
-import "./chunk-J5SSS23O.js";
-import "./chunk-CQRVUKEE.js";
-import "./chunk-W4TUKJCB.js";
+} from "./chunk-RBR3IG3G.js";
+import "./chunk-FYG7VQ7T.js";
+import "./chunk-NPF7ALOT.js";
+import "./chunk-PK7RKVD3.js";
+import "./chunk-UMVOMUR4.js";
+import "./chunk-CKQZM2PF.js";
+import "./chunk-TF7SEHUK.js";
+import "./chunk-UPO2PKBY.js";
+import "./chunk-CII543O5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-WE3EAKHW.js";
-import "./chunk-WP3DXIXL.js";
-import "./chunk-RY7CVONT.js";
+import "./chunk-MGCBVRAS.js";
+import "./chunk-DUTCGKL3.js";
+import "./chunk-5MWX5HUZ.js";
 import "./chunk-IQIXGTQV.js";
-import "./chunk-P6LA7M67.js";
+import "./chunk-BXU7CROE.js";
 import "./chunk-FIZTETYY.js";
 import "./chunk-6FAOO3OA.js";
 import "./chunk-XN6AK5OY.js";
@@ -39,4 +40,4 @@ export {
   getDefaultBoxplotSettings,
   getPlotConfig
 };
-//# sourceMappingURL=BoxPlot-UZHQTYQD.js.map
+//# sourceMappingURL=BoxPlot-XCHFMSFO.js.map

package/dist/{CorrelationVolcano-FAID62QF.js → CorrelationVolcano-6GT4KZT4.js} RENAMED Viewed

@@ -1,11 +1,11 @@
 import {
   PlotBase
-} from "./chunk-FFBSCYRY.js";
+} from "./chunk-UMVOMUR4.js";
 import {
   controlsInit
-} from "./chunk-QPFAE6LH.js";
-import "./chunk-J5SSS23O.js";
-import "./chunk-CQRVUKEE.js";
+} from "./chunk-CKQZM2PF.js";
+import "./chunk-TF7SEHUK.js";
+import "./chunk-UPO2PKBY.js";
 import {
   LegendCircleReference,
   appInit,
@@ -14,15 +14,15 @@ import {
   fillTwLst,
   table2col,
   to_svg
-} from "./chunk-W4TUKJCB.js";
+} from "./chunk-CII543O5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-WE3EAKHW.js";
+import "./chunk-MGCBVRAS.js";
 import {
   termType2label
-} from "./chunk-WP3DXIXL.js";
-import "./chunk-RY7CVONT.js";
+} from "./chunk-DUTCGKL3.js";
+import "./chunk-5MWX5HUZ.js";
 import "./chunk-IQIXGTQV.js";
-import "./chunk-P6LA7M67.js";
+import "./chunk-BXU7CROE.js";
 import "./chunk-FIZTETYY.js";
 import "./chunk-6FAOO3OA.js";
 import {
@@ -614,4 +614,4 @@ export {
   getDefaultCorrVolcanoSettings,
   getPlotConfig
 };
-//# sourceMappingURL=CorrelationVolcano-FAID62QF.js.map
+//# sourceMappingURL=CorrelationVolcano-6GT4KZT4.js.map

package/dist/{DifferentialAnalysis-X45EBP42.js → DifferentialAnalysis-IWJ5YLJ7.js} RENAMED Viewed

@@ -1,30 +1,31 @@
 import {
   getDefaultGseaSettings
-} from "./chunk-KZGMDFJK.js";
+} from "./chunk-G55ZCWGU.js";
+import "./chunk-YITTA7L7.js";
+import {
+  importPlot
+} from "./chunk-NPF7ALOT.js";
 import {
   getDefaultVolcanoSettings,
   validateVolcanoSettings
-} from "./chunk-DZPHA26B.js";
-import {
-  importPlot
-} from "./chunk-KWUHKD3R.js";
+} from "./chunk-PK7RKVD3.js";
 import {
   PlotBase
-} from "./chunk-FFBSCYRY.js";
-import "./chunk-QPFAE6LH.js";
-import "./chunk-J5SSS23O.js";
-import "./chunk-CQRVUKEE.js";
+} from "./chunk-UMVOMUR4.js";
+import "./chunk-CKQZM2PF.js";
+import "./chunk-TF7SEHUK.js";
+import "./chunk-UPO2PKBY.js";
 import {
   Tabs
-} from "./chunk-W4TUKJCB.js";
+} from "./chunk-CII543O5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-WE3EAKHW.js";
+import "./chunk-MGCBVRAS.js";
 import {
   termType2label
-} from "./chunk-WP3DXIXL.js";
-import "./chunk-RY7CVONT.js";
+} from "./chunk-DUTCGKL3.js";
+import "./chunk-5MWX5HUZ.js";
 import "./chunk-IQIXGTQV.js";
-import "./chunk-P6LA7M67.js";
+import "./chunk-BXU7CROE.js";
 import "./chunk-FIZTETYY.js";
 import "./chunk-6FAOO3OA.js";
 import {
@@ -127,6 +128,7 @@ var DifferentialAnalysis = class extends PlotBase {
     };
     this.plotsControlsDiv = {};
     this.plotsDiv = {};
+    if (opts.parentId) this.parentId = opts.parentId;
     if (opts.header) {
       this.dom.header = {
         terms: opts.header.append("span"),
@@ -197,7 +199,7 @@ var DifferentialAnalysis = class extends PlotBase {
 };
 var DiffAnalysisInit = getCompInit(DifferentialAnalysis);
 var componentInit = DiffAnalysisInit;
-var enabledTermTypes = ["geneExpression"];
+var enabledTermTypes = ["geneExpression", "singleCellCellType"];
 function getPlotConfig(opts) {
   if (!opts.termType) throw ".termType is required [DifferentialAnalysis getPlotConfig()]";
   if (!enabledTermTypes.includes(opts.termType))
@@ -214,8 +216,10 @@ function getPlotConfig(opts) {
   if (opts.termType == "geneExpression") {
     config.settings.volcano = getDefaultVolcanoSettings(opts.overrides || {}, opts);
     config.settings.gsea = getDefaultGseaSettings(opts.overrides || {});
-    validateVolcanoSettings(config, opts);
   }
+  if (opts.termType == "singleCellCellType") {
+  }
+  validateVolcanoSettings(config, opts);
   return copyMerge(config, opts);
 }
 export {
@@ -223,4 +227,4 @@ export {
   componentInit,
   getPlotConfig
 };
-//# sourceMappingURL=DifferentialAnalysis-X45EBP42.js.map
+//# sourceMappingURL=DifferentialAnalysis-IWJ5YLJ7.js.map

package/dist/DifferentialAnalysis-IWJ5YLJ7.js.map ADDED Viewed

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/diffAnalysis/view/DiffAnalysisView.ts", "../plots/diffAnalysis/DifferentialAnalysis.ts"],
+  "sourcesContent": ["import type { MassAppApi } from '#mass/types/mass'\nimport { Tabs } from '#dom'\nimport type { RenderedTab } from '#dom'\nimport type { DiffAnalysisDom, DiffAnalysisPlotConfig } from '../DiffAnalysisTypes'\n\nexport class DiffAnalysisView {\n\tapp: MassAppApi\n\tconfig: DiffAnalysisPlotConfig\n\tdom: DiffAnalysisDom\n\ttabs: Tabs\n\ttabsData: RenderedTab[]\n\tgetTabsOptions: any\n\tconstructor(app: MassAppApi, config: DiffAnalysisPlotConfig, dom: DiffAnalysisDom) {\n\t\tthis.app = app\n\t\tthis.config = config\n\t\tthis.dom = dom\n\t\tsetRenderers(this)\n\t\tthis.tabsData = this.getTabsOptions(this)\n\t\tthis.tabs = new Tabs({ holder: this.dom.tabsDiv, tabs: this.tabsData })\n\t\tthis.tabs.main()\n\t}\n\n\tupdate(plotConfig) {\n\t\tconst activeTabIndex = this.tabsData.findIndex(tab => tab.id == plotConfig.childType)\n\t\tthis.tabs.update(activeTabIndex)\n\t}\n}\n\nfunction setRenderers(self) {\n\tself.getTabsOptions = self => {\n\t\tconst tabs = [\n\t\t\t{\n\t\t\t\tactive: self.config.childType === 'volcano',\n\t\t\t\tid: 'volcano',\n\t\t\t\tlabel: 'Volcano',\n\t\t\t\tisVisible: () => self.config.termType === 'geneExpression',\n\t\t\t\tgetPlotConfig: () => {\n\t\t\t\t\treturn {\n\t\t\t\t\t\tchildType: 'volcano'\n\t\t\t\t\t}\n\t\t\t\t},\n\t\t\t\tcallback: self.tabCallback\n\t\t\t},\n\t\t\t{\n\t\t\t\tactive: self.config.childType === 'gsea',\n\t\t\t\tid: 'gsea',\n\t\t\t\tlabel: 'Gene Set Enrichment Analysis',\n\t\t\t\tisVisible: () => self.config.termType === 'geneExpression',\n\t\t\t\tgetPlotConfig: () => {\n\t\t\t\t\treturn {\n\t\t\t\t\t\tchildType: 'gsea'\n\t\t\t\t\t}\n\t\t\t\t},\n\t\t\t\tcallback: self.tabCallback\n\t\t\t}\n\t\t]\n\t\treturn tabs\n\t}\n\n\t//event is used in Tabs but not needed here\n\tself.tabCallback = async (event, tab) => {\n\t\tif (!tab || !tab.id) return\n\t\tconst plotConfig = tab.getPlotConfig()\n\t\tawait self.app.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: self.config.id,\n\t\t\tconfig: plotConfig\n\t\t})\n\t}\n}\n", "import type { BasePlotConfig, MassState } from '#mass/types/mass'\nimport type { Div } from '../../types/d3'\nimport { getCompInit, copyMerge, type RxComponent } from '#rx'\nimport { PlotBase } from '../PlotBase'\nimport { importPlot } from '../importPlot.js'\nimport { Menu } from '#dom'\nimport { termType2label } from '#shared/terms.js'\nimport type { DiffAnalysisDom, DiffAnalysisOpts, DiffAnalysisPlotConfig } from './DiffAnalysisTypes'\nimport { DiffAnalysisView } from './view/DiffAnalysisView'\nimport { getDefaultVolcanoSettings, validateVolcanoSettings } from '../volcano/defaults.ts'\nimport { getDefaultGseaSettings } from '#plots/gsea.js'\n\n/** TODO:\n * - type this file\n */\nclass DifferentialAnalysis extends PlotBase implements RxComponent {\n\tstatic type = 'differentialAnalysis'\n\treadonly type = 'differentialAnalysis'\n\tcomponents: {\n\t\tplots: { [key: string]: any }\n\t}\n\tdom: DiffAnalysisDom\n\tparentId?: string\n\tplotTabs?: DiffAnalysisView\n\tplotsDiv: { [key: string]: Div }\n\tplotsControlsDiv: { [key: string]: Div }\n\ttermType: string\n\n\tconstructor(opts: any, api) {\n\t\tsuper(opts, api)\n\t\tthis.components = {\n\t\t\tplots: {}\n\t\t}\n\t\tthis.termType = opts.termType\n\t\tconst holder = opts.holder.classed('sjpp-diff-analysis-main', true)\n\t\tconst controls = opts.controls ? holder : holder.append('div')\n\t\tconst div = holder\n\t\t\t.append('div')\n\t\t\t.style('padding', '5px')\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('vertical-align', 'top')\n\t\tconst tabsDiv = div.append('div').attr('id', 'sjpp-diff-analysis-tabs').style('display', 'inline-block')\n\t\tconst plots = div.append('div').attr('id', 'sjpp-diff-analysis-tabs-content')\n\t\tthis.dom = {\n\t\t\tcontrols: controls.style('display', 'inline-block'),\n\t\t\tdiv,\n\t\t\ttabsDiv,\n\t\t\tplots: plots,\n\t\t\ttip: new Menu({ padding: '' })\n\t\t}\n\t\tthis.plotsControlsDiv = {}\n\t\tthis.plotsDiv = {}\n\n\t\tif (opts.parentId) this.parentId = opts.parentId\n\n\t\tif (opts.header) {\n\t\t\tthis.dom.header = {\n\t\t\t\tterms: opts.header.append('span'),\n\t\t\t\ttitle: opts.header.append('span').style('font-size', '0.8em').style('opacity', 0.7)\n\t\t\t}\n\t\t}\n\t}\n\n\tgetState(appState: MassState) {\n\t\tconst config = appState.plots.find((p: BasePlotConfig) => p.id === this.id)\n\t\tif (!config) {\n\t\t\tthrow `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`\n\t\t}\n\n\t\treturn {\n\t\t\tconfig\n\t\t}\n\t}\n\n\treactsTo(action) {\n\t\tif (action.type.includes('cache_termq')) return true\n\t\tif (action.type.startsWith('plot_')) {\n\t\t\treturn action.id === this.id || action.id == this.parentId\n\t\t}\n\t\tif (action.type.startsWith('filter')) return true\n\t\tif (action.type.startsWith('cohort')) return true\n\t\tif (action.type == 'app_refresh') return true\n\t}\n\n\tasync init(appState: MassState) {\n\t\tconst state = this.getState(appState)\n\t\tconst config = structuredClone(state.config) as DiffAnalysisPlotConfig\n\n\t\tthis.plotTabs = new DiffAnalysisView(this.app, config, this.dom)\n\t}\n\n\tasync setComponent(config: DiffAnalysisPlotConfig) {\n\t\tthis.plotsControlsDiv[config.childType] = this.dom.controls.append('div')\n\t\tthis.plotsDiv[config.childType] = this.dom.plots.append('div')\n\t\tconst opts = {\n\t\t\tapp: this.app,\n\t\t\tholder: this.plotsDiv[config.childType],\n\t\t\tid: this.id,\n\t\t\tparent: this.api,\n\t\t\tcontrols: this.plotsControlsDiv[config.childType],\n\t\t\ttermType: config.termType\n\t\t}\n\t\tconst _ = await importPlot(config.childType, `unsupported childType='${config.childType}'`)\n\t\tthis.components.plots[config.childType] = await _.componentInit(opts)\n\t}\n\n\tasync main() {\n\t\tconst config = structuredClone(this.state.config)\n\t\tif (config.chartType != this.type) return\n\n\t\tif (!this.components.plots[config.childType]) await this.setComponent(config)\n\n\t\tfor (const childType in this.components.plots) {\n\t\t\tconst chart = this.components.plots[childType]\n\t\t\tif (chart.type != config.childType) {\n\t\t\t\tthis.plotsDiv[chart.type].style('display', 'none')\n\t\t\t\tthis.plotsControlsDiv[chart.type].style('display', 'none')\n\t\t\t}\n\t\t}\n\t\tthis.plotsDiv[config.childType].style('display', '')\n\t\tthis.plotsControlsDiv[config.childType].style('display', '')\n\n\t\tif (this.dom.header) {\n\t\t\tthis.dom.header.terms.text(config.tw.term.name)\n\t\t\tconst typeStr = termType2label(config.termType).toUpperCase()\n\t\t\tthis.dom.header.title.text(` DIFFERENTIAL ${typeStr} ANALYSIS`)\n\t\t}\n\n\t\tif (this.plotTabs) this.plotTabs.update(config)\n\t}\n}\n\nexport const DiffAnalysisInit = getCompInit(DifferentialAnalysis)\nexport const componentInit = DiffAnalysisInit\n\n//Use this as a sanity check.\nconst enabledTermTypes = ['geneExpression', 'singleCellCellType']\n\nexport function getPlotConfig(opts: DiffAnalysisOpts) {\n\tif (!opts.termType) throw '.termType is required [DifferentialAnalysis getPlotConfig()]'\n\tif (!enabledTermTypes.includes(opts.termType))\n\t\tthrow `termType '${opts.termType}' not supported by DifferentialAnalysis`\n\n\tconst config = {\n\t\tchartType: 'differentialAnalysis',\n\t\tchildType: 'volcano',\n\t\ttermType: opts.termType,\n\t\thighlightedData: opts.highlightedData || [],\n\t\tsettings: {},\n\t\thidePlotFilter: true //TODO: Support filtering and reactivity in child plots\n\t} as any\n\n\tif (opts.termType == 'geneExpression') {\n\t\tconfig.settings.volcano = getDefaultVolcanoSettings(opts.overrides || {}, opts)\n\t\tconfig.settings.gsea = getDefaultGseaSettings(opts.overrides || {})\n\t}\n\tif (opts.termType == 'singleCellCellType') {\n\t\t//TODO: Add DA settings for sc cell type\n\t}\n\n\tvalidateVolcanoSettings(config, opts)\n\n\treturn copyMerge(config, opts)\n}\n"],
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+}