@sixb/sqlite 0.1.9 → 0.1.10

package/dist/migrations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../src/migrations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAA;AACjD,OAAO,KAAK,EAGV,YAAY,EACZ,aAAa,EACb,oBAAoB,EACrB,MAAM,oBAAoB,CAAA;AA+F3B,eAAO,MAAM,yBAAyB,sBAAsB,CAAA;AAC5D,eAAO,MAAM,mBAAmB,mBAAmB,CAAA;AAEnD,eAAO,MAAM,uBAAuB,wBA4ElC,CAAA;AAEF,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE1D;AAED,wBAAgB,SAAS,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,aAAa,CAAC,QAAQ,CAAC,CAQ9E;AAED,wBAAgB,UAAU,CACxB,EAAE,EAAE,MAAM,EACV,EAAE,EAAE,CAAC,EAAE,EAAE,QAAQ,KAAK,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,EAC1C,OAAO,GAAE,oBAAyB,GACjC,aAAa,CAAC,QAAQ,CAAC,CAEzB;AAED,wBAAgB,wBAAwB,CAAC,EAAE,EAAE,QAAQ,GAAG,IAAI,CAS3D;AAED,wBAAgB,4BAA4B,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,eAAe,EAAE,CAOzF;AAED,wBAAgB,oBAAoB,CAAC,MAAM,EAAE;IAC3C,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAA;IACrB,QAAQ,CAAC,UAAU,EAAE,YAAY,CAAC,QAAQ,CAAC,CAAA;CAC5C,GAAG,eAAe,CAoBlB;AAED,wBAAsB,oBAAoB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAM1E"}
+{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../src/migrations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAA;AACjD,OAAO,KAAK,EAGV,YAAY,EACZ,aAAa,EACb,oBAAoB,EACrB,MAAM,oBAAoB,CAAA;AAkG3B,eAAO,MAAM,yBAAyB,sBAAsB,CAAA;AAC5D,eAAO,MAAM,mBAAmB,mBAAmB,CAAA;AAEnD,eAAO,MAAM,uBAAuB,wBA8ElC,CAAA;AAEF,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE1D;AAED,wBAAgB,SAAS,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,aAAa,CAAC,QAAQ,CAAC,CAQ9E;AAED,wBAAgB,UAAU,CACxB,EAAE,EAAE,MAAM,EACV,EAAE,EAAE,CAAC,EAAE,EAAE,QAAQ,KAAK,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,EAC1C,OAAO,GAAE,oBAAyB,GACjC,aAAa,CAAC,QAAQ,CAAC,CAEzB;AAED,wBAAgB,wBAAwB,CAAC,EAAE,EAAE,QAAQ,GAAG,IAAI,CAS3D;AAED,wBAAgB,4BAA4B,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,eAAe,EAAE,CAOzF;AAED,wBAAgB,oBAAoB,CAAC,MAAM,EAAE;IAC3C,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAA;IACrB,QAAQ,CAAC,UAAU,EAAE,YAAY,CAAC,QAAQ,CAAC,CAAA;CAC5C,GAAG,eAAe,CAoBlB;AAED,wBAAsB,oBAAoB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAM1E"}

package/dist/ontology-storage/materialization-state.d.ts

@@ -15,6 +15,7 @@ export type ReplacementIdentity = {
     readonly diffRequired: boolean;
 };
 interface ReplacementIdentityInput {
+    readonly incremental?: boolean;
     readonly sessionId: string;
     readonly sourceId: string;
     readonly candidateMaterializationId: string;
@@ -49,7 +50,7 @@ export declare class SqliteMaterializationStateReader {
     replacementObjectStates(sourceId: string, candidateMaterializationId: string, refs: readonly OntologyObjectRef[]): readonly SourceReplacementObjectState[];
     replacementLinkStates(sourceId: string, candidateMaterializationId: string, materializationIds: readonly string[], identities: readonly Extract<ReplacementIdentity, {
         readonly kind: "link";
-    }>[]): readonly SourceReplacementLinkState[];
+    }>[], incremental?: boolean): readonly SourceReplacementLinkState[];
     effectiveObjectRevision(ref: OntologyObjectRef): {
         readonly version: number;
         readonly lastCommitId: string | null;

package/dist/ontology-storage/materialization-state.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"materialization-state.d.ts","sourceRoot":"","sources":["../../src/ontology-storage/materialization-state.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAC1C,OAAO,KAAK,EAGV,eAAe,EACf,iBAAiB,EAEjB,kBAAkB,EACnB,MAAM,qCAAqC,CAAA;AAe5C,OAAO,KAAK,EACV,gCAAgC,EAChC,6BAA6B,EAC7B,wBAAwB,EACxB,0BAA0B,EAC1B,0BAA0B,EAC1B,4BAA4B,EAO5B,oBAAoB,EACrB,MAAM,oBAAoB,CAAA;AAW3B,eAAO,MAAM,iCAAiC,kCAAkC,CAAA;AAChF,eAAO,MAAM,6BAA6B,8BAA8B,CAAA;AAiFxE,MAAM,MAAM,mBAAmB,GAC3B;IACE,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAA;IACvB,QAAQ,CAAC,GAAG,EAAE,iBAAiB,CAAA;IAC/B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAA;IACxB,QAAQ,CAAC,YAAY,EAAE,IAAI,CAAA;CAC5B,GACD;IACE,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAA;IACrB,QAAQ,CAAC,GAAG,EAAE,eAAe,CAAA;IAC7B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAA;IACxB,QAAQ,CAAC,YAAY,EAAE,OAAO,CAAA;CAC/B,CAAA;AAEL,UAAU,wBAAwB;IAChC,QAAQ,CAAC,WAAW,CAAC,EAAE,OAAO,CAAA;IAC9B,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAA;IAC1B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAA;IACzB,QAAQ,CAAC,0BAA0B,EAAE,MAAM,CAAA;IAC3C,QAAQ,CAAC,yBAAyB,EAAE,MAAM,GAAG,IAAI,CAAA;IACjD,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,MAAM,CAAA;IAChC,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAA;CAC1B;AAcD,qBAAa,gCAAgC;IAEzC,OAAO,CAAC,QAAQ,CAAC,EAAE;IACnB,QAAQ,CAAC,SAAS,EAAE,MAAM;gBADT,EAAE,EAAE,QAAQ,EACpB,SAAS,EAAE,MAAM;IAG5B,WAAW,CAAC,GAAG,EAAE,iBAAiB,GAAG,0BAA0B;IAI/D,YAAY,CAAC,IAAI,EAAE,SAAS,iBAAiB,EAAE,GAAG,SAAS,0BAA0B,EAAE;IA8FvF,SAAS,CAAC,GAAG,EAAE,eAAe,GAAG,wBAAwB;IAIzD,UAAU,CAAC,IAAI,EAAE,SAAS,eAAe,EAAE,GAAG,SAAS,wBAAwB,EAAE;IAmGjF,UAAU,CAAC,MAAM,EAAE,kBAAkB,EAAE,EAAE,EAAE,MAAM,GAAG,oBAAoB,GAAG,IAAI;IAI/E,WAAW,CACT,MAAM,EAAE,SAAS;QAAE,QAAQ,CAAC,MAAM,EAAE,kBAAkB,CAAC;QAAC,QAAQ,CAAC,EAAE,EAAE,MAAM,CAAA;KAAE,EAAE,GAC9E,SAAS,oBAAoB,EAAE;IAwClC,kBAAkB,CAChB,MAAM,EAAE,SAAS;QAAE,QAAQ,CAAC,MAAM,EAAE,iBAAiB,CAAC;QAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAA;KAAE,EAAE,GACjF,SAAS,gCAAgC,EAAE;IAK9C,cAAc,CACZ,MAAM,EAAE,SAAS;QAAE,QAAQ,CAAC,MAAM,EAAE,iBAAiB,CAAC;QAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAA;KAAE,EAAE,GACjF,SAAS,6BAA6B,EAAE;IAgE3C,OAAO,CAAC,uBAAuB;IAwD9B,aAAa,CACZ,OAAO,EAAE,SAAS,iBAAiB,EAAE,EACrC,QAAQ,EAAE,MAAM,GACf,QAAQ,CAAC,eAAe,EAAE,CAAC;IA4D7B,qBAAqB,CAAC,KAAK,EAAE,wBAAwB,GAAG,QAAQ,CAAC,mBAAmB,EAAE,CAAC;IAaxF,uBAAuB,CACrB,QAAQ,EAAE,MAAM,EAChB,0BAA0B,EAAE,MAAM,EAClC,IAAI,EAAE,SAAS,iBAAiB,EAAE,GACjC,SAAS,4BAA4B,EAAE;IAoB1C,qBAAqB,CACnB,QAAQ,EAAE,MAAM,EAChB,0BAA0B,EAAE,MAAM,EAClC,kBAAkB,EAAE,SAAS,MAAM,EAAE,EACrC,UAAU,EAAE,SAAS,OAAO,CAAC,mBAAmB,EAAE;QAAE,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,EAAE,EAC9E,WAAW,UAAQ,GAClB,SAAS,0BAA0B,EAAE;IAyBxC,uBAAuB,CAAC,GAAG,EAAE,iBAAiB,GAAG;QAC/C,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAA;QACxB,QAAQ,CAAC,YAAY,EAAE,MAAM,GAAG,IAAI,CAAA;KACrC,GAAG,IAAI;IAaR,uBAAuB,CAAC,GAAG,EAAE,eAAe,GAAG,MAAM,GAAG,IAAI,GAAG,SAAS;IAoBxE,OAAO,CAAC,kBAAkB;IA8B1B,OAAO,CAAC,4BAA4B;IAQpC,OAAO,CAAC,yBAAyB;IAuBjC,OAAO,CAAC,uBAAuB;IA2I/B,OAAO,CAAC,eAAe;CAwBxB;AAiMD,wBAAgB,kBAAkB,CAAC,KAAK,CAAC,EAAE,MAAM,GAAG,MAAM,CAGzD"}

package/dist/ontology-storage/materializations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"materializations.d.ts","sourceRoot":"","sources":["../../src/ontology-storage/materializations.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AA2B1C,OAAO,KAAK,EACV,8BAA8B,EAC9B,0BAA0B,EAC1B,4BAA4B,EAC5B,8BAA8B,EAC9B,yBAAyB,EACzB,sBAAsB,EACtB,wBAAwB,EACxB,uBAAuB,EAEvB,8BAA8B,EAC9B,uCAAuC,EAEvC,0BAA0B,EAC1B,6BAA6B,EAC7B,+BAA+B,EAC/B,8BAA8B,EAC9B,iCAAiC,EAClC,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAGL,KAAK,gCAAgC,EACtC,MAAM,2BAA2B,CAAA;AAiBlC,qBAAa,oCAAqC,YAAW,8BAA8B;IAKvF,OAAO,CAAC,QAAQ,CAAC,EAAE;IAJrB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAA+B;IACxD,OAAO,CAAC,QAAQ,CAAC,MAAM,CAA6B;gBAGjC,EAAE,EAAE,QAAQ,EAC7B,OAAO,EAAE,gCAAgC,GAAG,IAAI;IAM5C,KAAK,CAAC,KAAK,EAAE,yBAAyB,GAAG,OAAO,CAAC,sBAAsB,CAAC;IAmCvE,WAAW,CAChB,KAAK,EAAE,+BAA+B,GACrC,aAAa,CAAC,wBAAwB,CAAC;IAmDnC,4BAA4B,CACjC,KAAK,EAAE,iCAAiC,GACvC,aAAa,CAAC,0BAA0B,CAAC;IA0FtC,SAAS,CAAC,KAAK,EAAE,6BAA6B,GAAG,OAAO,CAAC,IAAI,CAAC;IAKpE,UAAU,CAAC,KAAK,EAAE,8BAA8B,GAAG,aAAa,CAAC,uBAAuB,CAAC;IAKnF,mBAAmB,CACvB,KAAK,EAAE,uCAAuC,GAC7C,OAAO,CAAC,SAAS,8BAA8B,EAAE,CAAC;IAK/C,UAAU,CAAC,KAAK,EAAE,8BAA8B,GAAG,OAAO,CAAC,IAAI,CAAC;IAkBhE,QAAQ,CAAC,KAAK,EAAE,4BAA4B,GAAG,OAAO,CAAC,0BAA0B,CAAC;IAYxF,kBAAkB,IAAI,IAAI;IAI1B,OAAO,CAAC,kBAAkB;IA2D1B,OAAO,CAAC,kBAAkB;IA+C1B,OAAO,CAAC,YAAY;IAgBpB,OAAO,CAAC,YAAY;IAsBpB,OAAO,CAAC,UAAU;YAsBJ,kBAAkB;IAwDhC,OAAO,CAAC,sBAAsB;IAwD9B,OAAO,CAAC,cAAc;IAqGtB,OAAO,CAAC,YAAY;IAmDpB,OAAO,CAAC,eAAe;IASvB,OAAO,CAAC,SAAS;CAYlB"}
+{"version":3,"file":"materializations.d.ts","sourceRoot":"","sources":["../../src/ontology-storage/materializations.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AA2B1C,OAAO,KAAK,EACV,8BAA8B,EAC9B,0BAA0B,EAC1B,4BAA4B,EAC5B,8BAA8B,EAC9B,yBAAyB,EACzB,sBAAsB,EACtB,wBAAwB,EACxB,uBAAuB,EAEvB,8BAA8B,EAC9B,uCAAuC,EAEvC,0BAA0B,EAC1B,6BAA6B,EAC7B,+BAA+B,EAC/B,8BAA8B,EAC9B,iCAAiC,EAClC,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAGL,KAAK,gCAAgC,EACtC,MAAM,2BAA2B,CAAA;AAkBlC,qBAAa,oCAAqC,YAAW,8BAA8B;IAKvF,OAAO,CAAC,QAAQ,CAAC,EAAE;IAJrB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAA+B;IACxD,OAAO,CAAC,QAAQ,CAAC,MAAM,CAA6B;gBAGjC,EAAE,EAAE,QAAQ,EAC7B,OAAO,EAAE,gCAAgC,GAAG,IAAI;IAM5C,KAAK,CAAC,KAAK,EAAE,yBAAyB,GAAG,OAAO,CAAC,sBAAsB,CAAC;IAmCvE,WAAW,CAChB,KAAK,EAAE,+BAA+B,GACrC,aAAa,CAAC,wBAAwB,CAAC;IAmDnC,4BAA4B,CACjC,KAAK,EAAE,iCAAiC,GACvC,aAAa,CAAC,0BAA0B,CAAC;IA6FtC,SAAS,CAAC,KAAK,EAAE,6BAA6B,GAAG,OAAO,CAAC,IAAI,CAAC;IAKpE,UAAU,CAAC,KAAK,EAAE,8BAA8B,GAAG,aAAa,CAAC,uBAAuB,CAAC;IAKnF,mBAAmB,CACvB,KAAK,EAAE,uCAAuC,GAC7C,OAAO,CAAC,SAAS,8BAA8B,EAAE,CAAC;IAK/C,UAAU,CAAC,KAAK,EAAE,8BAA8B,GAAG,OAAO,CAAC,IAAI,CAAC;IAkBhE,QAAQ,CAAC,KAAK,EAAE,4BAA4B,GAAG,OAAO,CAAC,0BAA0B,CAAC;IAYxF,kBAAkB,IAAI,IAAI;IAI1B,OAAO,CAAC,kBAAkB;IA4D1B,OAAO,CAAC,kBAAkB;IA+C1B,OAAO,CAAC,YAAY;IAgBpB,OAAO,CAAC,YAAY;IAsBpB,OAAO,CAAC,UAAU;YAsBJ,kBAAkB;IAwDhC,OAAO,CAAC,sBAAsB;IAwD9B,OAAO,CAAC,cAAc;IAsGtB,OAAO,CAAC,YAAY;IAmDpB,OAAO,CAAC,eAAe;IASvB,OAAO,CAAC,SAAS;CAYlB"}

package/dist/ontology-storage/shared.d.ts

@@ -37,6 +37,8 @@ export interface SqliteOntologySourceRow {
     readonly ownership_hash: string;
     readonly ontology_revision: string;
     readonly root_count: number | null;
+    readonly base_materialization_id: string | null;
+    readonly base_commit_id: string | null;
     readonly assertion_count: number | null;
     readonly created_at: string;
     readonly ready_at: string | null;

package/dist/ontology-storage/shared.d.ts.map

@@ -1 +1 @@
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package/dist/ontology-storage/source-cleanup.d.ts

@@ -0,0 +1,4 @@
+import type { Database } from "bun:sqlite";
+import type { CleanupTerminalSourceMaterializationsInput, CleanupTerminalSourceMaterializationsResult } from "@sixb/core/storage";
+export declare function cleanupSourceVersions(db: Database, input: CleanupTerminalSourceMaterializationsInput): CleanupTerminalSourceMaterializationsResult;
+//# sourceMappingURL=source-cleanup.d.ts.map

package/dist/ontology-storage/source-cleanup.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"source-cleanup.d.ts","sourceRoot":"","sources":["../../src/ontology-storage/source-cleanup.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAC1C,OAAO,KAAK,EACV,0CAA0C,EAC1C,2CAA2C,EAC5C,MAAM,oBAAoB,CAAA;AAE3B,wBAAgB,qBAAqB,CACnC,EAAE,EAAE,QAAQ,EACZ,KAAK,EAAE,0CAA0C,GAChD,2CAA2C,CAiD7C"}

package/dist/ontology-storage/source-roots.d.ts

@@ -0,0 +1,27 @@
+import type { Database } from "bun:sqlite";
+import type { ProjectionEntityRef } from "@sixb/core/internal/materialization";
+import type { SourceActivationWrite, StageSourceRowsInput } from "@sixb/core/storage";
+import type { SqliteOntologySourceAssertionRow } from "./shared";
+import { type SqliteOntologySourceRow } from "./shared";
+export declare function replacementSourceRows(input: {
+    readonly projectId: string;
+    readonly sourceId: string;
+    readonly materializationId: string;
+    readonly incremental: boolean;
+}): {
+    readonly sql: string;
+    readonly values: readonly string[];
+};
+export declare function stageSourceRoots(db: Database, manifest: SqliteOntologySourceRow, input: StageSourceRowsInput): void;
+export declare function activateSourceRoots(db: Database, projectId: string, candidate: SqliteOntologySourceRow, activation: SourceActivationWrite): void;
+export declare function assertSourceRootCoverage(db: Database, manifest: SqliteOntologySourceRow): void;
+export declare function activeSourceRows(db: Database, projectId: string, refs: readonly ProjectionEntityRef[]): SqliteOntologySourceAssertionRow[];
+export declare function replacementAssertionRows(db: Database, input: {
+    projectId: string;
+    sourceId: string;
+    materializationId: string;
+    incremental: boolean;
+    includePrevious: boolean;
+    refs: readonly ProjectionEntityRef[];
+}): SqliteOntologySourceAssertionRow[];
+//# sourceMappingURL=source-roots.d.ts.map

package/dist/ontology-storage/source-roots.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"source-roots.d.ts","sourceRoot":"","sources":["../../src/ontology-storage/source-roots.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAC1C,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,qCAAqC,CAAA;AAO9E,OAAO,KAAK,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AACrF,OAAO,KAAK,EAAE,gCAAgC,EAAE,MAAM,UAAU,CAAA;AAChE,OAAO,EAAiB,KAAK,uBAAuB,EAAE,MAAM,UAAU,CAAA;AAEtE,wBAAgB,qBAAqB,CAAC,KAAK,EAAE;IAC3C,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAA;IAC1B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAA;IACzB,QAAQ,CAAC,iBAAiB,EAAE,MAAM,CAAA;IAClC,QAAQ,CAAC,WAAW,EAAE,OAAO,CAAA;CAC9B,GAAG;IAAE,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAA;CAAE,CAyB/D;AAED,wBAAgB,gBAAgB,CAC9B,EAAE,EAAE,QAAQ,EACZ,QAAQ,EAAE,uBAAuB,EACjC,KAAK,EAAE,oBAAoB,GAC1B,IAAI,CAuCN;AAED,wBAAgB,mBAAmB,CACjC,EAAE,EAAE,QAAQ,EACZ,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,uBAAuB,EAClC,UAAU,EAAE,qBAAqB,GAChC,IAAI,CAiCN;AAED,wBAAgB,wBAAwB,CAAC,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,uBAAuB,GAAG,IAAI,CAc9F;AAED,wBAAgB,gBAAgB,CAC9B,EAAE,EAAE,QAAQ,EACZ,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,SAAS,mBAAmB,EAAE,GACnC,gCAAgC,EAAE,CAuBpC;AAED,wBAAgB,wBAAwB,CACtC,EAAE,EAAE,QAAQ,EACZ,KAAK,EAAE;IACL,SAAS,EAAE,MAAM,CAAA;IACjB,QAAQ,EAAE,MAAM,CAAA;IAChB,iBAAiB,EAAE,MAAM,CAAA;IACzB,WAAW,EAAE,OAAO,CAAA;IACpB,eAAe,EAAE,OAAO,CAAA;IACxB,IAAI,EAAE,SAAS,mBAAmB,EAAE,CAAA;CACrC,GACA,gCAAgC,EAAE,CA6CpC"}

package/dist/ontology-storage/sources.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"sources.d.ts","sourceRoot":"","sources":["../../src/ontology-storage/sources.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAkB1C,OAAO,KAAK,EACV,0CAA0C,EAG1C,+BAA+B,EAC/B,0CAA0C,EAC1C,2CAA2C,EAC3C,4BAA4B,EAC5B,mCAAmC,EACnC,oBAAoB,EACpB,qBAAqB,EACrB,iCAAiC,EACjC,oBAAoB,EACpB,qBAAqB,EACrB,4CAA4C,EAC5C,oCAAoC,EACrC,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EASL,KAAK,mBAAmB,EAGzB,MAAM,UAAU,CAAA;AAIjB,qBAAa,2BAA4B,YAAW,qBAAqB;IAErE,OAAO,CAAC,QAAQ,CAAC,EAAE;IACnB,OAAO,CAAC,QAAQ,CAAC,gBAAgB;gBADhB,EAAE,EAAE,QAAQ,EACZ,gBAAgB,EAAE,mBAAmB;IAGlD,oBAAoB,CACxB,KAAK,EAAE,+BAA+B,GACrC,OAAO,CAAC,oBAAoB,CAAC;IAuE1B,SAAS,CAAC,KAAK,EAAE,oBAAoB,GAAG,OAAO,CAAC,qBAAqB,CAAC;IA2BtE,SAAS,CAAC,KAAK,EAAE,mCAAmC,GAAG,OAAO,CAAC,oBAAoB,CAAC;IA8DpF,SAAS,CAAC,KAAK,EAAE,4BAA4B,GAAG,OAAO,CAAC,oBAAoB,GAAG,IAAI,CAAC;IAepF,OAAO,CAAC,KAAK,EAAE,0CAA0C,GAAG,OAAO,CAAC,oBAAoB,CAAC;IACzF,OAAO,CAAC,KAAK,EAAE,iCAAiC,GAAG,OAAO,CAAC,oBAAoB,GAAG,IAAI,CAAC;IAavF,eAAe,CACnB,KAAK,EAAE,0CAA0C,GAChD,OAAO,CAAC,2CAA2C,CAAC;IASjD,iBAAiB,CACrB,KAAK,EAAE,4CAA4C,GAClD,OAAO,CAAC,oCAAoC,CAAC;IAsBhD,OAAO,CAAC,gBAAgB;IAuBxB,OAAO,CAAC,iBAAiB;IA6BzB,OAAO,CAAC,qBAAqB;IA0C7B,OAAO,CAAC,gBAAgB;IAgFxB,OAAO,CAAC,aAAa;IA+BrB,OAAO,CAAC,eAAe;IAwEvB,OAAO,CAAC,eAAe;IAiBvB,OAAO,CAAC,WAAW;IAenB,OAAO,CAAC,eAAe;CASxB"}

package/dist/projection-run-storage.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"projection-run-storage.d.ts","sourceRoot":"","sources":["../src/projection-run-storage.ts"],"names":[],"mappings":"AA8BA,OAAO,KAAK,EACV,yCAAyC,EACzC,gBAAgB,EAChB,6BAA6B,EAC7B,wBAAwB,EACxB,6BAA6B,EAC7B,8BAA8B,EAC9B,uBAAuB,EACvB,wBAAwB,EACxB,wCAAwC,EAExC,kBAAkB,EAElB,mBAAmB,EAEnB,oBAAoB,EACpB,uBAAuB,EACvB,kCAAkC,EAClC,gCAAgC,EAChC,4BAA4B,EAC5B,wBAAwB,EACzB,MAAM,oBAAoB,CAAA;AAI3B,OAAO,EAIL,KAAK,qBAAqB,EAC3B,MAAM,gBAAgB,CAAA;AAEvB,MAAM,WAAW,iCAAiC;IAChD,8DAA8D;IAC9D,UAAU,EAAE,gBAAgB,CAAA;IAC5B,mFAAmF;IACnF,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,gEAAgE;IAChE,UAAU,CAAC,EAAE,qBAAqB,CAAA;CACnC;AAED,qBAAa,0BAA2B,YAAW,oBAAoB;IACrE,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAuB;IAClD,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAU;IAC7B,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAkB;gBAEjC,OAAO,EAAE,iCAAiC;IAUhD,KAAK,CAAC,KAAK,EAAE,uBAAuB,GAAG,OAAO,CAAC,mBAAmB,CAAC;IA0DnE,cAAc,CAAC,KAAK,EAAE,gCAAgC,GAAG,OAAO,CAAC,kBAAkB,CAAC;IAyDpF,WAAW,CAAC,KAAK,EAAE,6BAA6B,GAAG,OAAO,CAAC,mBAAmB,CAAC;IA0B/E,sBAAsB,CAC1B,KAAK,EAAE,wCAAwC,GAC9C,OAAO,CAAC,mBAAmB,CAAC;IAIzB,MAAM,CAAC,KAAK,EAAE,wBAAwB,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAYrE,MAAM,CAAC,KAAK,EAAE,wBAAwB,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAqCrE,0BAA0B,CAC9B,KAAK,EAAE,yCAAyC,GAC/C,OAAO,CAAC,4BAA4B,CAAC;IAsClC,mBAAmB,CACvB,KAAK,EAAE,kCAAkC,GACxC,OAAO,CAAC,4BAA4B,CAAC;IAmClC,OAAO,CAAC,MAAM,EAAE;QAAE,SAAS,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,GAAG,OAAO,CAAC,mBAAmB,GAAG,IAAI,CAAC;IAKvF,IAAI,CAAC,KAAK,EAAE,uBAAuB,GAAG,OAAO,CAAC,wBAAwB,CAAC;IAmFvE,yBAAyB,CAC7B,KAAK,EAAE,6BAA6B,GACnC,OAAO,CAAC,8BAA8B,CAAC;IAY1C,KAAK,IAAI,IAAI;IAIb,OAAO,CAAC,+BAA+B;IAoBvC,OAAO,CAAC,YAAY;IA2CpB,OAAO,CAAC,cAAc;IA2BtB,OAAO,CAAC,+BAA+B;IAQvC,OAAO,CAAC,cAAc;IAMtB,OAAO,CAAC,OAAO;IAMf,OAAO,CAAC,UAAU;CAOnB"}
+{"version":3,"file":"projection-run-storage.d.ts","sourceRoot":"","sources":["../src/projection-run-storage.ts"],"names":[],"mappings":"AA8BA,OAAO,KAAK,EACV,yCAAyC,EACzC,gBAAgB,EAChB,6BAA6B,EAC7B,wBAAwB,EACxB,6BAA6B,EAC7B,8BAA8B,EAC9B,uBAAuB,EACvB,wBAAwB,EACxB,wCAAwC,EAExC,kBAAkB,EAElB,mBAAmB,EAEnB,oBAAoB,EACpB,uBAAuB,EACvB,kCAAkC,EAClC,gCAAgC,EAChC,4BAA4B,EAC5B,wBAAwB,EACzB,MAAM,oBAAoB,CAAA;AAI3B,OAAO,EAIL,KAAK,qBAAqB,EAC3B,MAAM,gBAAgB,CAAA;AAEvB,MAAM,WAAW,iCAAiC;IAChD,8DAA8D;IAC9D,UAAU,EAAE,gBAAgB,CAAA;IAC5B,mFAAmF;IACnF,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,gEAAgE;IAChE,UAAU,CAAC,EAAE,qBAAqB,CAAA;CACnC;AAED,qBAAa,0BAA2B,YAAW,oBAAoB;IACrE,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAuB;IAClD,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAU;IAC7B,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAkB;gBAEjC,OAAO,EAAE,iCAAiC;IAUhD,KAAK,CAAC,KAAK,EAAE,uBAAuB,GAAG,OAAO,CAAC,mBAAmB,CAAC;IA0DnE,cAAc,CAAC,KAAK,EAAE,gCAAgC,GAAG,OAAO,CAAC,kBAAkB,CAAC;IAyDpF,WAAW,CAAC,KAAK,EAAE,6BAA6B,GAAG,OAAO,CAAC,mBAAmB,CAAC;IA0B/E,sBAAsB,CAC1B,KAAK,EAAE,wCAAwC,GAC9C,OAAO,CAAC,mBAAmB,CAAC;IAIzB,MAAM,CAAC,KAAK,EAAE,wBAAwB,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAYrE,MAAM,CAAC,KAAK,EAAE,wBAAwB,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAuCrE,0BAA0B,CAC9B,KAAK,EAAE,yCAAyC,GAC/C,OAAO,CAAC,4BAA4B,CAAC;IAsClC,mBAAmB,CACvB,KAAK,EAAE,kCAAkC,GACxC,OAAO,CAAC,4BAA4B,CAAC;IAmClC,OAAO,CAAC,MAAM,EAAE;QAAE,SAAS,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,GAAG,OAAO,CAAC,mBAAmB,GAAG,IAAI,CAAC;IAKvF,IAAI,CAAC,KAAK,EAAE,uBAAuB,GAAG,OAAO,CAAC,wBAAwB,CAAC;IAmFvE,yBAAyB,CAC7B,KAAK,EAAE,6BAA6B,GACnC,OAAO,CAAC,8BAA8B,CAAC;IAY1C,KAAK,IAAI,IAAI;IAIb,OAAO,CAAC,+BAA+B;IAoBvC,OAAO,CAAC,YAAY;IA2CpB,OAAO,CAAC,cAAc;IA6BtB,OAAO,CAAC,+BAA+B;IAQvC,OAAO,CAAC,cAAc;IAMtB,OAAO,CAAC,OAAO;IAMf,OAAO,CAAC,UAAU;CAOnB"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sixb/sqlite",
-  "version": "0.1.9",
+  "version": "0.1.10",
   "description": "SQLite storage provider for Sixb",
   "keywords": [
     "sixb",
@@ -36,10 +36,10 @@
     "prepack": "bun run build"
   },
   "peerDependencies": {
-    "@sixb/core": "0.1.9"
+    "@sixb/core": "0.1.10"
   },
   "devDependencies": {
-    "@sixb/core": "0.1.9",
+    "@sixb/core": "0.1.10",
     "@types/bun": "latest",
     "typescript": "^5.7.0"
   },

package/src/connector-connection-storage.ts

@@ -87,7 +87,7 @@ class SqliteConnectorConnectionPersistence implements ConnectorConnectionPersist
           record.slot,
           record.initiatedByExecutionId,
           record.stateHash,
-          json(record.codeVerifier),
+          record.codeVerifier === undefined ? null : json(record.codeVerifier),
           record.redirectUri,
           record.connectionRunId ?? null,
           record.returnTo ?? null,
@@ -411,7 +411,7 @@ function authorizationAttemptFromRow(
     slot: row.slot,
     initiatedByExecutionId: row.initiated_by_execution_id,
     stateHash: row.state_hash,
-    codeVerifier: parseJson(row.code_verifier),
+    ...(row.code_verifier === null ? {} : { codeVerifier: parseJson(row.code_verifier) }),
     redirectUri: row.redirect_uri,
     ...(row.connection_run_id === null ? {} : { connectionRunId: row.connection_run_id }),
     ...(row.return_to === null ? {} : { returnTo: row.return_to }),
@@ -706,7 +706,7 @@ interface SqliteAuthorizationAttemptRow {
   readonly slot: string
   readonly initiated_by_execution_id: string
   readonly state_hash: string
-  readonly code_verifier: string
+  readonly code_verifier: string | null
   readonly redirect_uri: string
   readonly connection_run_id: string | null
   readonly return_to: string | null

package/src/migrations/038-projection-source-roots.sql

@@ -0,0 +1,44 @@
+ALTER TABLE ontology_sources ADD COLUMN base_materialization_id TEXT;
+ALTER TABLE ontology_sources ADD COLUMN base_commit_id TEXT
+  CHECK ((base_materialization_id IS NULL) = (base_commit_id IS NULL));
+
+CREATE TABLE ontology_source_roots (
+  project_id TEXT NOT NULL,
+  source_id TEXT NOT NULL,
+  materialization_id TEXT NOT NULL,
+  root_sort_key TEXT NOT NULL,
+  root_kind TEXT NOT NULL CHECK (root_kind IN ('object', 'link')),
+  root_key TEXT NOT NULL CHECK (json_valid(root_key)),
+  root TEXT NOT NULL CHECK (json_valid(root)),
+  staging_ordinal INTEGER NOT NULL CHECK (staging_ordinal >= 0),
+  deleted INTEGER NOT NULL DEFAULT 0 CHECK (deleted IN (0, 1)),
+  active INTEGER NOT NULL DEFAULT 0 CHECK (active IN (0, 1)),
+  retired_at TEXT,
+  PRIMARY KEY (project_id, source_id, materialization_id, root_sort_key),
+  UNIQUE (project_id, source_id, materialization_id, staging_ordinal),
+  FOREIGN KEY (project_id, source_id, materialization_id)
+    REFERENCES ontology_sources(project_id, source_id, materialization_id) ON DELETE RESTRICT,
+  CHECK (active = 0 OR (deleted = 0 AND retired_at IS NULL))
+);
+CREATE UNIQUE INDEX idx_ontology_source_roots_active
+  ON ontology_source_roots (project_id, source_id, root_sort_key) WHERE active = 1;
+CREATE INDEX idx_ontology_source_roots_lookup
+  ON ontology_source_roots (project_id, root_sort_key, source_id) WHERE active = 1;
+CREATE INDEX idx_ontology_source_roots_cleanup
+  ON ontology_source_roots (project_id, retired_at, source_id, materialization_id, root_sort_key)
+  WHERE active = 0 AND retired_at IS NOT NULL;
+
+INSERT INTO ontology_source_roots (
+  project_id, source_id, materialization_id, root_sort_key, root_kind, root_key, root,
+  staging_ordinal, active, retired_at
+)
+SELECT DISTINCT rows.project_id, rows.source_id, rows.materialization_id,
+  rows.root_sort_key, rows.root_kind, rows.root_key, rows.root, rows.staging_ordinal,
+  sources.status = 'active', sources.terminal_at
+FROM ontology_source_rows AS rows
+JOIN ontology_sources AS sources USING (project_id, source_id, materialization_id);
+
+ANALYZE ontology_source_roots;
+
+ALTER TABLE projection_runs ADD COLUMN source_changes_read INTEGER
+  CHECK (source_changes_read IS NULL OR source_changes_read >= 0);

package/src/migrations/039-connector-optional-pkce.sql

@@ -0,0 +1,52 @@
+-- Rebuild to remove NOT NULL while preserving existing attempts and their constraints.
+CREATE TABLE connector_authorization_attempts_optional_pkce (
+  project_id TEXT NOT NULL,
+  connector_id TEXT NOT NULL,
+  id TEXT NOT NULL,
+  slot TEXT NOT NULL,
+  initiated_by_execution_id TEXT NOT NULL,
+  state_hash TEXT NOT NULL,
+  code_verifier TEXT CHECK (
+    code_verifier IS NULL
+    OR (json_valid(code_verifier) AND json_type(code_verifier) = 'object')
+  ),
+  redirect_uri TEXT NOT NULL,
+  connection_run_id TEXT,
+  return_to TEXT,
+  callback_binding_hash TEXT,
+  reauthorization_id TEXT,
+  reauthorization_revision INTEGER CHECK (
+    reauthorization_revision IS NULL OR reauthorization_revision >= 0
+  ),
+  reauthorization_connection_ids TEXT CHECK (
+    reauthorization_connection_ids IS NULL
+    OR (json_valid(reauthorization_connection_ids) AND json_type(reauthorization_connection_ids) = 'array')
+  ),
+  created_at TEXT NOT NULL,
+  expires_at TEXT NOT NULL,
+  PRIMARY KEY (project_id, connector_id, id),
+  UNIQUE (project_id, id),
+  UNIQUE (project_id, connector_id, connection_run_id),
+  FOREIGN KEY (project_id, connector_id, connection_run_id)
+    REFERENCES connector_connection_runs (project_id, connector_id, id)
+    ON DELETE RESTRICT,
+  CHECK (
+    (connection_run_id IS NULL AND return_to IS NULL AND callback_binding_hash IS NULL)
+    OR
+    (connection_run_id IS NOT NULL AND return_to IS NOT NULL AND callback_binding_hash IS NOT NULL)
+  ),
+  CHECK (
+    (reauthorization_id IS NULL AND reauthorization_revision IS NULL AND reauthorization_connection_ids IS NULL)
+    OR
+    (reauthorization_id IS NOT NULL AND reauthorization_revision IS NOT NULL AND reauthorization_connection_ids IS NOT NULL)
+  )
+);
+
+INSERT INTO connector_authorization_attempts_optional_pkce
+SELECT * FROM connector_authorization_attempts;
+
+DROP TABLE connector_authorization_attempts;
+ALTER TABLE connector_authorization_attempts_optional_pkce RENAME TO connector_authorization_attempts;
+
+CREATE INDEX idx_connector_attempts_expiry
+  ON connector_authorization_attempts (project_id, connector_id, expires_at);

package/src/migrations.ts

@@ -90,6 +90,9 @@ import deviceAuthorizationsSql from "./migrations/034-device-authorizations.sql"
 }
 import shareGrantsSql from "./migrations/035-share-grants.sql" with { type: "text" }
 import shareSessionsSql from "./migrations/036-share-sessions.sql" with { type: "text" }
+import projectionSourceRootsSql from "./migrations/038-projection-source-roots.sql" with {
+  type: "text",
+}
 
 const MIGRATIONS_TABLE_SQL = `
   CREATE TABLE IF NOT EXISTS sixb_migrations (
@@ -182,6 +185,8 @@ export const sqliteStorageMigrations = defineMigrations({
     sqliteSql("035-share-grants", shareGrantsSql),
     sqliteSql("036-share-sessions", shareSessionsSql),
     sqliteSql("037-execution-requester-groups", executionRequesterGroupsSql),
+    sqliteSql("038-projection-source-roots", projectionSourceRootsSql),
+    sqliteSql("039-connector-optional-pkce", connectorOptionalPkceSql),
   ],
 })
 
@@ -401,3 +406,7 @@ function rollbackQuietly(db: Database): void {
 import executionRequesterGroupsSql from "./migrations/037-execution-requester-groups.sql" with {
   type: "text",
 }
+
+import connectorOptionalPkceSql from "./migrations/039-connector-optional-pkce.sql" with {
+  type: "text",
+}

package/src/ontology-storage/materialization-state.ts

@@ -44,6 +44,7 @@ import {
   type SqliteOntologySourceAssertionRow,
   type SqliteStoredOverrideRow,
 } from "./shared"
+import { activeSourceRows, replacementAssertionRows, replacementSourceRows } from "./source-roots"
 
 export const SQLITE_MATERIALIZATION_WORK_TABLE = "ontology_materialization_work"
 export const SQLITE_REPLACEMENT_WORK_TABLE = "ontology_replacement_work"
@@ -142,6 +143,7 @@ export type ReplacementIdentity =
     }
 
 interface ReplacementIdentityInput {
+  readonly incremental?: boolean
   readonly sessionId: string
   readonly sourceId: string
   readonly candidateMaterializationId: string
@@ -195,22 +197,11 @@ export class SqliteMaterializationStateReader {
           AND objects.primary_id = requested.primary_id`
       )
       .all(requested, this.projectId) as EffectiveObjectRow[]
-    const sourceRows = this.db
-      .query(
-        `WITH requested AS (${requestedObjects})
-         SELECT rows.* FROM requested
-         CROSS JOIN ontology_source_rows AS rows
-           ON rows.project_id = ?
-          AND rows.entity_kind = 'object'
-          AND rows.object_type_id = requested.object_type_id
-          AND rows.primary_id = requested.primary_id
-         JOIN ontology_sources AS sources
-           ON sources.project_id = rows.project_id
-          AND sources.source_id = rows.source_id
-          AND sources.materialization_id = rows.materialization_id
-         WHERE sources.status = 'active'`
-      )
-      .all(requested, this.projectId) as SqliteOntologySourceAssertionRow[]
+    const sourceRows = activeSourceRows(
+      this.db,
+      this.projectId,
+      refs.map((ref) => ({ kind: "object", ref }))
+    )
     const overrideRows = this.db
       .query(
         `WITH requested AS (${requestedObjects})
@@ -321,25 +312,11 @@ export class SqliteMaterializationStateReader {
           AND links.target_id = requested.target_id`
       )
       .all(requested, this.projectId) as EffectiveLinkRow[]
-    const sourceRows = this.db
-      .query(
-        `WITH requested AS (${sourceRequest})
-         SELECT rows.* FROM requested
-         CROSS JOIN ontology_source_rows AS rows
-           ON rows.project_id = ?
-          AND rows.entity_kind = 'link'
-          AND rows.source_type_id = requested.source_type_id
-          AND rows.source_primary_id = requested.source_primary_id
-          AND rows.link_id = requested.link_id
-          AND rows.target_type_id = requested.target_type_id
-          AND rows.target_primary_id = requested.target_primary_id
-         JOIN ontology_sources AS sources
-           ON sources.project_id = rows.project_id
-          AND sources.source_id = rows.source_id
-          AND sources.materialization_id = rows.materialization_id
-         WHERE sources.status = 'active'`
-      )
-      .all(requested, this.projectId) as SqliteOntologySourceAssertionRow[]
+    const sourceRows = activeSourceRows(
+      this.db,
+      this.projectId,
+      refs.map((ref) => ({ kind: "link", ref }))
+    )
     const overrideRows = this.db
       .query(
         `WITH requested AS (${sourceRequest})
@@ -468,11 +445,12 @@ export class SqliteMaterializationStateReader {
           AND rows.source_type_id = requested.source_type_id
           AND rows.source_primary_id = requested.source_primary_id
           AND rows.link_id = requested.link_id
-         JOIN ontology_sources AS sources
+         JOIN ontology_source_roots AS sources
            ON sources.project_id = rows.project_id
           AND sources.source_id = rows.source_id
           AND sources.materialization_id = rows.materialization_id
-         WHERE sources.status = 'active'`
+         AND sources.root_sort_key = rows.root_sort_key
+         WHERE sources.active = 1`
       )
       .all(requestedJson, this.projectId) as SqliteOntologySourceAssertionRow[]
     const slotOverrideRows = this.db
@@ -592,11 +570,12 @@ export class SqliteMaterializationStateReader {
               SELECT rows.source_type_id, rows.source_primary_id, rows.link_id,
                 rows.target_type_id, rows.target_primary_id
               FROM ontology_source_rows AS rows
-              JOIN ontology_sources AS sources
+              JOIN ontology_source_roots AS sources
                 ON sources.project_id = rows.project_id
                AND sources.source_id = rows.source_id
                AND sources.materialization_id = rows.materialization_id
-              WHERE rows.project_id = ? AND rows.entity_kind = 'link' AND sources.status = 'active'
+         AND sources.root_sort_key = rows.root_sort_key
+              WHERE rows.project_id = ? AND rows.entity_kind = 'link' AND sources.active = 1
             ), selected AS (
               SELECT DISTINCT links.*,
                 ${linkSortExpression("links")} AS sort_key
@@ -671,14 +650,16 @@ export class SqliteMaterializationStateReader {
     sourceId: string,
     candidateMaterializationId: string,
     materializationIds: readonly string[],
-    identities: readonly Extract<ReplacementIdentity, { readonly kind: "link" }>[]
+    identities: readonly Extract<ReplacementIdentity, { readonly kind: "link" }>[],
+    incremental = false
   ): readonly SourceReplacementLinkState[] {
     const refs = identities.map((identity) => identity.ref)
     const base = this.linkStates(refs)
     const replacements = this.replacementSources(
       sourceId,
       materializationIds,
-      refs.map((ref) => ({ kind: "link" as const, ref }))
+      refs.map((ref) => ({ kind: "link" as const, ref })),
+      incremental
     )
     const candidate = replacements.byMaterialization.get(candidateMaterializationId)
     return base.map((state, index) => {
@@ -735,39 +716,20 @@ export class SqliteMaterializationStateReader {
   private replacementSources(
     sourceId: string,
     materializationIds: readonly string[],
-    refs: readonly ProjectionEntityRef[]
+    refs: readonly ProjectionEntityRef[],
+    incremental = false
   ): ReplacementSources {
     if (materializationIds.length === 0 || refs.length === 0) {
       return { owned: new Set(), byMaterialization: new Map() }
     }
-    const requestedEntities = canonicalJson(
-      refs.map((ref) => ({ entityKind: ref.kind, entityKey: projectionEntityKey(ref) }))
-    )
-    const requestedMaterializations = canonicalJson([...new Set(materializationIds)])
-    const rows = this.db
-      .query(
-        `WITH requested_entities AS (
-           SELECT DISTINCT json_extract(value, '$.entityKind') AS entity_kind,
-             json_extract(value, '$.entityKey') AS entity_key
-           FROM json_each(?)
-         ), requested_materializations AS (
-           SELECT value AS materialization_id FROM json_each(?)
-         )
-         SELECT rows.* FROM requested_materializations
-         CROSS JOIN requested_entities
-         CROSS JOIN ontology_source_rows AS rows
-           ON rows.project_id = ?
-          AND rows.source_id = ?
-          AND rows.materialization_id = requested_materializations.materialization_id
-          AND rows.entity_kind = requested_entities.entity_kind
-          AND rows.entity_key = requested_entities.entity_key`
-      )
-      .all(
-        requestedEntities,
-        requestedMaterializations,
-        this.projectId,
-        sourceId
-      ) as SqliteOntologySourceAssertionRow[]
+    const rows = replacementAssertionRows(this.db, {
+      projectId: this.projectId,
+      sourceId,
+      materializationId: materializationIds[0]!,
+      incremental,
+      includePrevious: materializationIds.length > 1,
+      refs,
+    })
     const owned = new Set<string>()
     const byMaterialization = new Map<string, Map<string, StoredSourceAssertion>>()
     for (const row of rows) {
@@ -790,6 +752,12 @@ export class SqliteMaterializationStateReader {
   }
 
   private prepareReplacementObjects(input: ReplacementIdentityInput): void {
+    const rows = replacementSourceRows({
+      projectId: this.projectId,
+      sourceId: input.sourceId,
+      materializationId: input.candidateMaterializationId,
+      incremental: input.incremental ?? false,
+    })
     this.db
       .query(
         `
@@ -798,22 +766,21 @@ export class SqliteMaterializationStateReader {
           )
           SELECT ?, 'object', json_array(object_type_id, primary_id),
             MIN(entity_sort_key), 1
-          FROM ontology_source_rows
-          WHERE project_id = ? AND source_id = ? AND entity_kind = 'object'
-            AND materialization_id IN (?, COALESCE(?, ''))
+          FROM (${rows.sql}) AS rows
+          WHERE entity_kind = 'object'
           GROUP BY object_type_id, primary_id
         `
       )
-      .run(
-        input.sessionId,
-        this.projectId,
-        input.sourceId,
-        input.candidateMaterializationId,
-        input.previousMaterializationId
-      )
+      .run(input.sessionId, ...rows.values)
   }
 
   private prepareReplacementLinks(input: ReplacementIdentityInput): void {
+    const rows = replacementSourceRows({
+      projectId: this.projectId,
+      sourceId: input.sourceId,
+      materializationId: input.candidateMaterializationId,
+      incremental: input.incremental ?? false,
+    })
     this.db
       .query(
         `
@@ -826,9 +793,8 @@ export class SqliteMaterializationStateReader {
           ), replacement_links AS (
             SELECT source_type_id, source_primary_id AS source_id, link_id,
               target_type_id, target_primary_id AS target_id
-            FROM ontology_source_rows
-            WHERE project_id = ? AND source_id = ? AND entity_kind = 'link'
-              AND materialization_id IN (?, COALESCE(?, ''))
+            FROM (${rows.sql}) AS rows
+            WHERE entity_kind = 'link'
           ), incident_links AS (
             SELECT links.source_type_id, links.source_id, links.link_id,
               links.target_type_id, links.target_id
@@ -869,28 +835,30 @@ export class SqliteMaterializationStateReader {
             SELECT rows.source_type_id, rows.source_primary_id AS source_id,
               rows.link_id, rows.target_type_id, rows.target_primary_id AS target_id
             FROM ontology_source_rows AS rows
-            JOIN ontology_sources AS sources
+            JOIN ontology_source_roots AS sources
               ON sources.project_id = rows.project_id
              AND sources.source_id = rows.source_id
              AND sources.materialization_id = rows.materialization_id
+         AND sources.root_sort_key = rows.root_sort_key
             JOIN incident_objects
               ON incident_objects.object_type_id = rows.source_type_id
              AND incident_objects.primary_id = rows.source_primary_id
             WHERE rows.project_id = ? AND rows.entity_kind = 'link'
-              AND sources.status = 'active'
+              AND sources.active = 1
             UNION
             SELECT rows.source_type_id, rows.source_primary_id AS source_id,
               rows.link_id, rows.target_type_id, rows.target_primary_id AS target_id
             FROM ontology_source_rows AS rows
-            JOIN ontology_sources AS sources
+            JOIN ontology_source_roots AS sources
               ON sources.project_id = rows.project_id
              AND sources.source_id = rows.source_id
              AND sources.materialization_id = rows.materialization_id
+         AND sources.root_sort_key = rows.root_sort_key
             JOIN incident_objects
               ON incident_objects.object_type_id = rows.target_type_id
              AND incident_objects.primary_id = rows.target_primary_id
             WHERE rows.project_id = ? AND rows.entity_kind = 'link'
-              AND sources.status = 'active'
+              AND sources.active = 1
           ), diff_links AS (
             SELECT * FROM replacement_links
             UNION SELECT * FROM incident_links
@@ -932,10 +900,7 @@ export class SqliteMaterializationStateReader {
       )
       .run(
         input.sessionId,
-        this.projectId,
-        input.sourceId,
-        input.candidateMaterializationId,
-        input.previousMaterializationId,
+        ...rows.values,
         this.projectId,
         this.projectId,
         this.projectId,

package/src/ontology-storage/materializations.ts

@@ -65,6 +65,7 @@ import {
   type SqliteOntologyCommitRow,
   type SqliteOntologySourceRow,
 } from "./shared"
+import { activateSourceRoots } from "./source-roots"
 
 export class SqliteOntologyMaterializationStorage implements OntologyMaterializationStorage {
   private readonly sessions: SqliteMaterializationSessions
@@ -192,6 +193,7 @@ export class SqliteOntologyMaterializationStorage implements OntologyMaterializa
         sourceId: replacement.sourceId,
         candidateMaterializationId: replacement.candidateMaterializationId,
         previousMaterializationId: replacement.previousMaterializationId,
+        incremental: replacement.incremental,
         kind: "object",
         pageRows: input.pageRows,
       })) {
@@ -236,6 +238,7 @@ export class SqliteOntologyMaterializationStorage implements OntologyMaterializa
       sourceId: replacement.sourceId,
       candidateMaterializationId: replacement.candidateMaterializationId,
       previousMaterializationId: replacement.previousMaterializationId,
+      incremental: replacement.incremental,
       kind: "link",
       pageRows: input.pageRows,
     })) {
@@ -250,7 +253,8 @@ export class SqliteOntologyMaterializationStorage implements OntologyMaterializa
         replacement.sourceId,
         replacement.candidateMaterializationId,
         materializationIds,
-        linkIdentities
+        linkIdentities,
+        replacement.incremental
       )
       yield { objects: [], links }
     }
@@ -359,6 +363,7 @@ export class SqliteOntologyMaterializationStorage implements OntologyMaterializa
       sourceId: input.source.projectionId,
       candidateMaterializationId: input.candidateMaterializationId,
       previousMaterializationId: previous?.materialization_id ?? null,
+      incremental: candidate.base_materialization_id !== null,
       projectionKind: candidate.projection_kind,
       objectStreamStarted: false,
       objectStreamCompleted: false,
@@ -627,6 +632,7 @@ export class SqliteOntologyMaterializationStorage implements OntologyMaterializa
       invalidCorrelation("Source activation does not match its ready candidate identity.")
     }
     this.assertSource(activation.expected, commit.projectId)
+    activateSourceRoots(this.db, commit.projectId, candidate, activation)
     const previous = this.getActiveSource(commit.projectId, activation.source.projectionId)
     if (previous) {
       assertPinnedDatasetWatermark(