@signetai/core 0.146.4 → 0.147.0

package/dist/index.js

@@ -10004,6 +10004,259 @@ function up82(db) {
   db.exec("CREATE INDEX IF NOT EXISTS idx_skill_inv_harness ON skill_invocations(harness, created_at)");
 }
 
+// src/migrations/083-memory-lifecycle-repair.ts
+var DEPENDENCY_TYPES = new Set([
+  "uses",
+  "requires",
+  "owned_by",
+  "owns",
+  "blocks",
+  "informs",
+  "maintains",
+  "implements",
+  "built",
+  "depends_on",
+  "related_to",
+  "learned_from",
+  "teaches",
+  "knows",
+  "assumes",
+  "supports_claim",
+  "authored_by",
+  "links_to",
+  "contains",
+  "contains_note",
+  "contradicts",
+  "supersedes",
+  "part_of",
+  "produced_artifact",
+  "precedes",
+  "follows",
+  "triggers",
+  "may_execute",
+  "requires_approval_from",
+  "impacts",
+  "produces",
+  "consumes"
+]);
+function sqlStringList(values) {
+  return [...values].map((value) => `'${value}'`).join(", ");
+}
+function hasTable3(db, table) {
+  return Boolean(db.prepare("SELECT name FROM sqlite_master WHERE type = 'table' AND name = ?").get(table));
+}
+function hasColumn12(db, table, column) {
+  const rows = db.prepare(`PRAGMA table_info(${table})`).all();
+  return rows.some((row) => row.name === column);
+}
+function addColumnIfMissing20(db, table, column, definition) {
+  if (!hasColumn12(db, table, column))
+    db.exec(`ALTER TABLE ${table} ADD COLUMN ${column} ${definition}`);
+}
+function documentScopeColumnsPreservingExisting(db) {
+  const preserveAgentId = hasColumn12(db, "documents", "agent_id");
+  const preserveProject = hasColumn12(db, "documents", "project");
+  if (preserveAgentId) {
+    db.exec(`
+			CREATE TEMP TABLE __signet_doc_agent_guard AS
+			SELECT id, agent_id FROM documents
+			WHERE NULLIF(TRIM(agent_id), '') IS NOT NULL
+			  AND NULLIF(TRIM(agent_id), '') <> 'default'
+		`);
+  }
+  if (preserveProject) {
+    db.exec(`
+			CREATE TEMP TABLE __signet_doc_project_guard AS
+			SELECT id, project FROM documents
+			WHERE NULLIF(TRIM(project), '') IS NOT NULL
+		`);
+  }
+  try {
+    up80(db);
+    if (preserveAgentId) {
+      db.exec(`
+				UPDATE documents
+				SET agent_id = (SELECT agent_id FROM __signet_doc_agent_guard WHERE __signet_doc_agent_guard.id = documents.id)
+				WHERE EXISTS (SELECT 1 FROM __signet_doc_agent_guard WHERE __signet_doc_agent_guard.id = documents.id)
+			`);
+    }
+    if (preserveProject) {
+      db.exec(`
+				UPDATE documents
+				SET project = (SELECT project FROM __signet_doc_project_guard WHERE __signet_doc_project_guard.id = documents.id)
+				WHERE EXISTS (SELECT 1 FROM __signet_doc_project_guard WHERE __signet_doc_project_guard.id = documents.id)
+			`);
+    }
+  } finally {
+    db.exec("DROP TABLE IF EXISTS temp.__signet_doc_agent_guard");
+    db.exec("DROP TABLE IF EXISTS temp.__signet_doc_project_guard");
+  }
+}
+function up83(db) {
+  up79(db);
+  if (hasTable3(db, "documents")) {
+    documentScopeColumnsPreservingExisting(db);
+  }
+  up81(db);
+  addColumnIfMissing20(db, "memories", "superseded_by", "TEXT");
+  addColumnIfMissing20(db, "memories", "superseded_at", "TEXT");
+  addColumnIfMissing20(db, "memories", "superseded_reason", "TEXT");
+  db.exec("CREATE INDEX IF NOT EXISTS idx_memories_superseded_by ON memories(superseded_by)");
+  db.exec("CREATE INDEX IF NOT EXISTS idx_memories_active_supersession ON memories(is_deleted, superseded_by)");
+  if (!hasTable3(db, "relations") || !hasTable3(db, "entity_dependencies"))
+    return;
+  addColumnIfMissing20(db, "entity_dependencies", "confidence", "REAL");
+  addColumnIfMissing20(db, "entity_dependencies", "reason", "TEXT");
+  addColumnIfMissing20(db, "entity_dependencies", "source_id", "TEXT");
+  addColumnIfMissing20(db, "entity_dependencies", "source_kind", "TEXT");
+  addColumnIfMissing20(db, "entity_dependencies", "proposal_evidence", "TEXT NOT NULL DEFAULT '[]'");
+  addColumnIfMissing20(db, "entity_dependencies", "status", "TEXT NOT NULL DEFAULT 'active'");
+  const relationConfidence = hasColumn12(db, "relations", "confidence") ? "r.confidence" : "NULL";
+  const relationUpdatedAt = hasColumn12(db, "relations", "updated_at") ? "r.updated_at" : "r.created_at";
+  const sourceAgentId = hasColumn12(db, "entities", "agent_id") ? "COALESCE(NULLIF(TRIM(src.agent_id), ''), 'default')" : "'default'";
+  const targetAgentId = hasColumn12(db, "entities", "agent_id") ? "COALESCE(NULLIF(TRIM(dst.agent_id), ''), 'default')" : "'default'";
+  db.exec(`
+		INSERT OR IGNORE INTO entity_dependencies (
+			id,
+			source_entity_id,
+			target_entity_id,
+			agent_id,
+			dependency_type,
+			strength,
+			confidence,
+			reason,
+			created_at,
+			updated_at,
+			source_id,
+			source_kind,
+			proposal_evidence,
+			status
+		)
+		SELECT
+			'relation:' || r.id,
+			r.source_entity_id,
+			r.target_entity_id,
+			COALESCE(${sourceAgentId}, ${targetAgentId}, 'default'),
+			CASE WHEN r.relation_type IN (${sqlStringList(DEPENDENCY_TYPES)}) THEN r.relation_type ELSE 'related_to' END,
+			MAX(0.1, MIN(1.0, COALESCE(r.strength, 0.5))),
+			MAX(0.1, MIN(1.0, COALESCE(${relationConfidence}, 0.7))),
+			'legacy relation backfill: ' || r.relation_type,
+			COALESCE(r.created_at, datetime('now')),
+			COALESCE(${relationUpdatedAt}, r.created_at, datetime('now')),
+			r.id,
+			'relation',
+			'[]',
+			'active'
+		FROM relations r
+		JOIN entities src ON src.id = r.source_entity_id
+		JOIN entities dst ON dst.id = r.target_entity_id
+		WHERE r.source_entity_id <> r.target_entity_id
+		  AND ${sourceAgentId} = ${targetAgentId}
+	`);
+}
+
+// src/migrations/084-legacy-markdown-import-state.ts
+function up84(db) {
+  db.exec(`
+		CREATE TABLE IF NOT EXISTS legacy_markdown_imports (
+			path TEXT PRIMARY KEY,
+			mtime_ms INTEGER NOT NULL,
+			ctime_ms INTEGER NOT NULL,
+			size INTEGER NOT NULL,
+			content_hash TEXT NOT NULL,
+			importer_version INTEGER NOT NULL,
+			chunk_count INTEGER NOT NULL DEFAULT 0,
+			last_imported_at TEXT NOT NULL,
+			last_seen_at TEXT NOT NULL,
+			status TEXT NOT NULL DEFAULT 'imported',
+			error TEXT
+		);
+
+		CREATE TABLE IF NOT EXISTS legacy_markdown_chunks (
+			file_path TEXT NOT NULL,
+			chunk_hash TEXT NOT NULL,
+			chunk_index INTEGER NOT NULL,
+			memory_id TEXT,
+			source_id TEXT,
+			created_at TEXT NOT NULL,
+			PRIMARY KEY (file_path, chunk_hash)
+		);
+
+		CREATE INDEX IF NOT EXISTS idx_legacy_markdown_chunks_memory_id
+			ON legacy_markdown_chunks(memory_id);
+	`);
+}
+
+// src/migrations/085-backfill-relations-to-dependencies.ts
+function up85(db) {
+  const tables = db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name IN ('relations', 'entity_dependencies')").all();
+  const tableNames = new Set(tables.map((r) => String(r.name)));
+  if (!tableNames.has("relations") || !tableNames.has("entity_dependencies"))
+    return;
+  const relCols = db.prepare("PRAGMA table_info(relations)").all();
+  const depCols = db.prepare("PRAGMA table_info(entity_dependencies)").all();
+  const rel = new Set(relCols.map((c) => String(c.name)));
+  const dep = new Set(depCols.map((c) => String(c.name)));
+  if (!rel.has("source_entity_id") || !rel.has("relation_type"))
+    return;
+  if (!dep.has("source_entity_id") || !dep.has("dependency_type") || !dep.has("agent_id"))
+    return;
+  const hasRelConfidence = rel.has("confidence");
+  const hasRelUpdated = rel.has("updated_at");
+  const hasDepConfidence = dep.has("confidence");
+  const hasDepReason = dep.has("reason");
+  const hasDepStatus = dep.has("status");
+  const selectParts = ["id", "source_entity_id", "target_entity_id"];
+  const colParts = ["id", "source_entity_id", "target_entity_id"];
+  selectParts.push("relation_type");
+  colParts.push("dependency_type");
+  selectParts.push("strength", "created_at");
+  colParts.push("strength", "created_at");
+  selectParts.push("'default'");
+  colParts.push("agent_id");
+  selectParts.push("NULL");
+  colParts.push("aspect_id");
+  if (hasRelConfidence && hasDepConfidence) {
+    selectParts.push("confidence");
+    colParts.push("confidence");
+  }
+  if (hasDepReason) {
+    selectParts.push("'extracted'");
+    colParts.push("reason");
+  }
+  if (hasDepStatus) {
+    selectParts.push("'active'");
+    colParts.push("status");
+  }
+  if (hasRelUpdated && dep.has("updated_at")) {
+    selectParts.push("updated_at");
+    colParts.push("updated_at");
+  }
+  const selectClause = selectParts.join(", ");
+  const colsClause = colParts.join(", ");
+  db.exec(`INSERT OR IGNORE INTO entity_dependencies (${colsClause})
+		 SELECT ${selectClause}
+		 FROM relations
+		 WHERE source_entity_id IS NOT NULL
+		   AND target_entity_id IS NOT NULL
+		   AND relation_type IS NOT NULL`);
+}
+
+// src/migrations/086-summary-jobs-content-hash.ts
+function addColumnIfMissing21(db, table, column, definition) {
+  const cols = db.prepare(`PRAGMA table_info(${table})`).all();
+  if (cols.some((col) => col.name === column))
+    return;
+  db.exec(`ALTER TABLE ${table} ADD COLUMN ${column} ${definition}`);
+}
+function up86(db) {
+  addColumnIfMissing21(db, "summary_jobs", "content_hash", "TEXT");
+  db.exec(`
+		CREATE INDEX IF NOT EXISTS idx_summary_jobs_agent_session_content_hash
+		ON summary_jobs(agent_id, session_key, content_hash)
+	`);
+}
+
 // src/migrations/index.ts
 var MIGRATIONS = [
   {
@@ -10669,6 +10922,45 @@ var MIGRATIONS = [
         { table: "skill_invocations", column: "tool_use_id" }
       ]
     }
+  },
+  {
+    version: 83,
+    name: "memory-lifecycle-repair",
+    up: up83,
+    artifacts: {
+      tables: ["transcript_capture_jobs", "aggregate_evidence_sources", "entity_dependencies"],
+      columns: [
+        { table: "documents", column: "agent_id" },
+        { table: "documents", column: "project" },
+        { table: "memories", column: "superseded_by" },
+        { table: "memories", column: "superseded_at" },
+        { table: "memories", column: "superseded_reason" }
+      ]
+    }
+  },
+  {
+    version: 84,
+    name: "legacy-markdown-import-state",
+    up: up84,
+    artifacts: {
+      tables: ["legacy_markdown_imports", "legacy_markdown_chunks"]
+    }
+  },
+  {
+    version: 85,
+    name: "backfill-relations-to-dependencies",
+    up: up85,
+    artifacts: {
+      tables: ["entity_dependencies"]
+    }
+  },
+  {
+    version: 86,
+    name: "summary-jobs-content-hash",
+    up: up86,
+    artifacts: {
+      columns: [{ table: "summary_jobs", column: "content_hash" }]
+    }
   }
 ];
 function checksum(m) {
@@ -11572,7 +11864,7 @@ var ENTITY_TYPES = [
 ];
 var ATTRIBUTE_KINDS = ["attribute", "constraint"];
 var ATTRIBUTE_STATUSES = ["active", "superseded", "deleted"];
-var DEPENDENCY_TYPES = [
+var DEPENDENCY_TYPES2 = [
   "uses",
   "requires",
   "owned_by",
@@ -20494,7 +20786,7 @@ export {
   Database,
   DOCUMENT_STATUSES,
   DOCUMENT_SOURCE_TYPES,
-  DEPENDENCY_TYPES,
+  DEPENDENCY_TYPES2 as DEPENDENCY_TYPES,
   DEPENDENCY_DESCRIPTIONS,
   DEFAULT_REPLAY_WINDOW_MS,
   DEFAULT_PROVIDER_RATE_LIMIT,

package/dist/migrations/083-memory-lifecycle-repair.d.ts

@@ -0,0 +1,3 @@
+import type { MigrationDb } from "./index";
+export declare function up(db: MigrationDb): void;
+//# sourceMappingURL=083-memory-lifecycle-repair.d.ts.map

package/dist/migrations/083-memory-lifecycle-repair.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"083-memory-lifecycle-repair.d.ts","sourceRoot":"","sources":["../../src/migrations/083-memory-lifecycle-repair.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,SAAS,CAAC;AA8F3C,wBAAgB,EAAE,CAAC,EAAE,EAAE,WAAW,GAAG,IAAI,CAwExC"}

package/dist/migrations/084-legacy-markdown-import-state.d.ts

@@ -0,0 +1,3 @@
+import type { MigrationDb } from "./index";
+export declare function up(db: MigrationDb): void;
+//# sourceMappingURL=084-legacy-markdown-import-state.d.ts.map

package/dist/migrations/084-legacy-markdown-import-state.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"084-legacy-markdown-import-state.d.ts","sourceRoot":"","sources":["../../src/migrations/084-legacy-markdown-import-state.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,SAAS,CAAC;AAE3C,wBAAgB,EAAE,CAAC,EAAE,EAAE,WAAW,GAAG,IAAI,CA6BxC"}

package/dist/migrations/085-backfill-relations-to-dependencies.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Migration 085: Backfill relations into entity_dependencies.
+ *
+ * The extraction pipeline writes extracted entity triples into the `relations`
+ * table (legacy), while graph diagnostics and traversal read from
+ * `entity_dependencies` (current). No code was bridging them, so extracted
+ * relations were invisible to graph traversal: edgeCount was always 0.
+ *
+ * This migration copies every existing `relations` row into
+ * `entity_dependencies`, mapping columns across the schema difference.
+ * Idempotent — INSERT OR IGNORE skips rows that already exist (matched on
+ * source_entity_id, target_entity_id, dependency_type, agent_id via the
+ * idx_entity_deps_unique index).
+ */
+import type { MigrationDb } from "./index";
+export declare function up(db: MigrationDb): void;
+//# sourceMappingURL=085-backfill-relations-to-dependencies.d.ts.map

package/dist/migrations/085-backfill-relations-to-dependencies.d.ts.map

@@ -0,0 +1 @@
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package/dist/migrations/086-summary-jobs-content-hash.d.ts

@@ -0,0 +1,3 @@
+import type { MigrationDb } from "./index";
+export declare function up(db: MigrationDb): void;
+//# sourceMappingURL=086-summary-jobs-content-hash.d.ts.map

package/dist/migrations/086-summary-jobs-content-hash.d.ts.map

@@ -0,0 +1 @@
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package/dist/migrations/index.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@signetai/core",
-  "version": "0.146.4",
+  "version": "0.147.0",
   "license": "Apache-2.0",
   "description": "Core library for Signet - portable AI agent identity",
   "type": "module",