@shrkcrft/cli 0.1.0-alpha.22 → 0.1.0-alpha.24

package/dist/command-registry.d.ts

@@ -149,6 +149,15 @@ export declare function resolveCwd(args: ParsedArgs): string;
 export declare function flagString(args: ParsedArgs, name: string): string | undefined;
 export declare function flagBool(args: ParsedArgs, name: string): boolean;
 export declare function flagNumber(args: ParsedArgs, name: string): number | undefined;
+/**
+ * Parse a `--limit`/`--depth`-style flag as a positive integer, falling back to
+ * `fallback` when the flag is absent OR malformed (non-numeric, NaN, <= 0,
+ * non-integer). Guards the `Number(flagString(...))` footgun where a
+ * fat-fingered `--limit abc` becomes NaN and silently yields empty-or-unbounded
+ * results (`[].slice(0, NaN) === []`, `x >= NaN === false`). Use everywhere a
+ * count/cap is read from a flag.
+ */
+export declare function flagPositiveInt(args: ParsedArgs, name: string, fallback: number): number;
 /**
  * Canonical multi-value flag parser.
  *

package/dist/command-registry.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"command-registry.d.ts","sourceRoot":"","sources":["../src/command-registry.ts"],"names":[],"mappings":"AAEA,MAAM,WAAW,UAAU;IACzB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,KAAK,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC;IACrC,0EAA0E;IAC1E,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;IAClC,4EAA4E;IAC5E,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;IACd;;;;;;OAMG;IACH,YAAY,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;IACnC,GAAG,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC;CACjD;AAED;;;;;GAKG;AACH,UAAU,gBAAgB;IACxB,OAAO,CAAC,EAAE,eAAe,CAAC;IAC1B,QAAQ,CAAC,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,gBAAgB,CAAC,CAAC;IACjD,QAAQ,CAAC,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACvC;AAMD,mDAAmD;AACnD,MAAM,WAAW,kBAAkB;IACjC,mFAAmF;IACnF,OAAO,CAAC,EAAE,eAAe,CAAC;IAC1B,sEAAsE;IACtE,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,0EAA0E;IAC1E,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,6EAA6E;IAC7E,IAAI,EAAE,gBAAgB,CAAC;CACxB;AAED;;;;;;;;;GASG;AACH,qBAAa,eAAe;IAC1B,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAoC;IACzD,uFAAuF;IACvF,OAAO,CAAC,QAAQ,CAAC,YAAY,CAA6B;IAC1D,OAAO,CAAC,QAAQ,CAAC,cAAc,CAA6B;IAE5D,oDAAoD;IACpD,QAAQ,CAAC,OAAO,EAAE,eAAe,GAAG,IAAI;IAIxC,0DAA0D;IAC1D,kBAAkB,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,eAAe,GAAG,IAAI;IAIjE;;;;OAIG;IACH,UAAU,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,EAAE,OAAO,EAAE,eAAe,GAAG,IAAI;IAgBnE,qCAAqC;IACrC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI;IAKlD,uCAAuC;IACvC,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI;IAKpD,iEAAiE;IACjE,OAAO,CAAC,UAAU,EAAE,SAAS,MAAM,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI;IAa9E,gCAAgC;IAChC,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,eAAe,GAAG,SAAS;IAK9C,8BAA8B;IAC9B,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,eAAe,GAAG,SAAS;IAOhE,8DAA8D;IAC9D,KAAK,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,eAAe,GAAG,SAAS;IAK3D,YAAY,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM;IAInC,UAAU,IAAI,SAAS,MAAM,EAAE;IAW/B,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,eAAe,EAAE;IAWpD,2EAA2E;IAC3E,aAAa,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,SAAS,MAAM,EAAE;IAUzD,gBAAgB,IAAI,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC;IAI/C,kBAAkB,IAAI,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC;IAIjD,gDAAgD;IAChD,IAAI,IAAI,SAAS,eAAe,EAAE;IAQlC,oDAAoD;IACpD,OAAO,IAAI,aAAa,CAAC;QAAE,QAAQ,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,CAAC;QAAC,QAAQ,CAAC,OAAO,EAAE,eAAe,CAAA;KAAE,CAAC;IAMjG;;;;;;;;OAQG;IACH,OAAO,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,GAAG,kBAAkB;IAsBtD,OAAO,CAAC,OAAO;IAUf,OAAO,CAAC,UAAU;CAWnB;AAQD,MAAM,WAAW,gBAAgB;IAC/B,uEAAuE;IACvE,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,yEAAyE;IACzE,YAAY,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;CACpC;AAED,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,EAAE,OAAO,GAAE,gBAAqB,GAAG,UAAU,CA6C7F;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG;IACzD,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,EAAE,CAAC;CAChB,CA+BA;AAED,8EAA8E;AAC9E,MAAM,WAAW,wBAAwB;IACvC,kEAAkE;IAClE,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,uEAAuE;IACvE,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;GAMG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG;IAC9D,SAAS,CAAC,EAAE,wBAAwB,CAAC;IACrC,IAAI,EAAE,MAAM,EAAE,CAAC;CAChB,CAkEA;AAED;;;;;GAKG;AACH,wBAAgB,UAAU,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,CAKnD;AAED,wBAAgB,UAAU,CAAC,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAG7E;AAED,wBAAgB,QAAQ,CAAC,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,GAAG,OAAO,CAGhE;AAED,wBAAgB,UAAU,CAAC,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAK7E;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAKxF;AAED;;;;;;;;;;;;;GAaG;AACH,MAAM,WAAW,gBAAgB;IAC/B,0EAA0E;IAC1E,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,qEAAqE;IACrE,KAAK,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAC1B;;;;;;;;;OASG;IACH,KAAK,CAAC,EAAE,QAAQ,GAAG,OAAO,GAAG,MAAM,CAAC;CACrC;AAED,wBAAgB,QAAQ,CACtB,IAAI,EAAE,UAAU,EAChB,IAAI,EAAE,MAAM,EACZ,OAAO,GAAE,gBAAqB,GAC7B,MAAM,EAAE,CAkCV;AAED,wBAAgB,QAAQ,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAQjE"}

package/dist/command-registry.js

@@ -396,6 +396,21 @@ export function flagNumber(args, name) {
     const n = Number(v);
     return Number.isFinite(n) ? n : undefined;
 }
+/**
+ * Parse a `--limit`/`--depth`-style flag as a positive integer, falling back to
+ * `fallback` when the flag is absent OR malformed (non-numeric, NaN, <= 0,
+ * non-integer). Guards the `Number(flagString(...))` footgun where a
+ * fat-fingered `--limit abc` becomes NaN and silently yields empty-or-unbounded
+ * results (`[].slice(0, NaN) === []`, `x >= NaN === false`). Use everywhere a
+ * count/cap is read from a flag.
+ */
+export function flagPositiveInt(args, name, fallback) {
+    const v = args.flags.get(name);
+    if (typeof v !== 'string')
+        return fallback;
+    const n = Number(v);
+    return Number.isFinite(n) && n > 0 ? Math.floor(n) : fallback;
+}
 export function flagList(args, name, options = {}) {
     const split = options.split ?? 'always';
     const raw = args.multiFlags.get(name) ?? [];

package/dist/commands/ai-status.command.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ai-status.command.d.ts","sourceRoot":"","sources":["../../src/commands/ai-status.command.ts"],"names":[],"mappings":"AAOA,OAAO,EAIL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAGhC;;;;;;;;;;;;;;;GAeG;AACH,eAAO,MAAM,eAAe,EAAE,eAkD7B,CAAC"}
+{"version":3,"file":"ai-status.command.d.ts","sourceRoot":"","sources":["../../src/commands/ai-status.command.ts"],"names":[],"mappings":"AAOA,OAAO,EAIL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAGhC;;;;;;;;;;;;;;;GAeG;AACH,eAAO,MAAM,eAAe,EAAE,eA+D7B,CAAC"}

package/dist/commands/ai-status.command.js

@@ -34,9 +34,15 @@ export const aiStatusCommand = {
                 ? await pingProvider(selection.provider, pingTimeoutMs)
                 : { ok: false, reason: 'no provider reachable — nothing to ping', elapsedMs: 0 };
         }
+        // Freshness-shaped signal, consistent with the other status commands:
+        // the LLM wiring is `fresh` when a provider is reachable (and the optional
+        // ping succeeded), else `stale` — i.e. shrk is on the deterministic
+        // baseline and the setup hints apply.
+        const state = ai.reachable && (!ping || ping.ok) ? 'fresh' : 'stale';
         if (json) {
             process.stdout.write(asJson({
                 ai,
+                state,
                 ...(ping ? { ping } : {}),
             }) + '\n');
             return ai.reachable && (!ping || ping.ok) ? 0 : 1;
@@ -45,6 +51,10 @@ export const aiStatusCommand = {
         process.stdout.write(kv('reachable', ai.reachable ? 'yes' : 'no') + '\n');
         process.stdout.write(kv('requested provider', ai.requestedProvider) + '\n');
         process.stdout.write(kv('resolved provider', ai.providerId ?? '(none)') + '\n');
+        process.stdout.write(kv('state', state) + '\n');
+        if (state === 'stale') {
+            process.stdout.write('! stale — no AI provider reachable; running on the deterministic baseline. See the setup hints below.\n');
+        }
         if (ping) {
             process.stdout.write(kv('ping', ping.ok
                 ? `ok in ${ping.elapsedMs}ms` + (ping.model ? ` (model: ${ping.model})` : '')

package/dist/commands/apply.command.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"apply.command.d.ts","sourceRoot":"","sources":["../../src/commands/apply.command.ts"],"names":[],"mappings":"AAqDA,OAAO,EAKL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAyLhC,eAAO,MAAM,YAAY,EAAE,eAisB1B,CAAC"}
+{"version":3,"file":"apply.command.d.ts","sourceRoot":"","sources":["../../src/commands/apply.command.ts"],"names":[],"mappings":"AAqDA,OAAO,EAKL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAyLhC,eAAO,MAAM,YAAY,EAAE,eAwsB1B,CAAC"}

package/dist/commands/apply.command.js

@@ -407,7 +407,12 @@ export const applyCommand = {
             livePlan = result.value.plan;
         }
         const diff = diffPlanChanges(saved, livePlan);
-        if (diff.length > 0 && !allowDivergent && !force) {
+        // Divergence acceptance is decoupled from the overwrite strategy: only the
+        // explicit --allow-divergent waives a divergence refusal. --force selects
+        // the overwrite strategy and must NOT double as a silent divergence bypass
+        // (a signed-but-drifted plan would otherwise apply while printing
+        // "Signature: verified"). A user who wants both passes --force --allow-divergent.
+        if (diff.length > 0 && !allowDivergent) {
             if (!wantJson) {
                 process.stdout.write('Plan diverged from the saved version:\n');
                 for (const d of diff) {
@@ -462,7 +467,9 @@ export const applyCommand = {
         // continue to carry their structured folderOps verbatim.
         const liveFolderOps = plannedFolderOps;
         const folderOpDiff = diffPlanFolderOps(saved, liveFolderOps);
-        if (folderOpDiff.length > 0 && !allowDivergent && !force) {
+        // Same decoupling as the file-op divergence gate above: --force is the
+        // overwrite strategy only; --allow-divergent is the explicit waiver.
+        if (folderOpDiff.length > 0 && !allowDivergent) {
             if (!wantJson) {
                 process.stdout.write('Folder-op set diverged from the saved version:\n');
                 for (const d of folderOpDiff) {

package/dist/commands/ask.command.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ask.command.d.ts","sourceRoot":"","sources":["../../src/commands/ask.command.ts"],"names":[],"mappings":"AAOA,OAAO,EAKL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAIhC,eAAO,MAAM,UAAU,EAAE,eA6DxB,CAAC"}
+{"version":3,"file":"ask.command.d.ts","sourceRoot":"","sources":["../../src/commands/ask.command.ts"],"names":[],"mappings":"AAYA,OAAO,EAKL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAIhC,eAAO,MAAM,UAAU,EAAE,eA8DxB,CAAC"}

package/dist/commands/ask.command.js

@@ -1,4 +1,4 @@
-import { inspectSharkcraft, buildProjectOverview, renderOverviewText } from '@shrkcrft/inspector';
+import { inspectSharkcraft, buildProjectOverview, renderOverviewText, contextTuningBoostFor, } from '@shrkcrft/inspector';
 import { buildContext } from '@shrkcrft/context';
 import { AiMessageRole, buildPromptMessages, selectAiProvider, } from '@shrkcrft/ai';
 import { flagBool, flagNumber, flagString, resolveCwd, } from "../command-registry.js";
@@ -24,6 +24,7 @@ export const askCommand = {
             task: question,
             maxTokens,
             projectOverview: renderOverviewText(overview),
+            boostFor: contextTuningBoostFor(inspection, question),
         });
         const messages = buildPromptMessages({
             systemPreamble: 'You are an AI engineer working in a SharkCraft-instrumented repository. Use the supplied repository context as authoritative ground truth. Quote knowledge entry ids you used.',

package/dist/commands/changes.command.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"changes.command.d.ts","sourceRoot":"","sources":["../../src/commands/changes.command.ts"],"names":[],"mappings":"AAiBA,OAAO,EAKL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAqHhC,eAAO,MAAM,cAAc,EAAE,eAoB5B,CAAC"}
+{"version":3,"file":"changes.command.d.ts","sourceRoot":"","sources":["../../src/commands/changes.command.ts"],"names":[],"mappings":"AAiBA,OAAO,EAKL,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AA2HhC,eAAO,MAAM,cAAc,EAAE,eAwB5B,CAAC"}

package/dist/commands/changes.command.js

@@ -14,7 +14,11 @@ async function runChangesSummary(args) {
     const inspection = await inspectSharkcraft({ cwd });
     const since = flagString(args, 'since');
     const staged = flagBool(args, 'staged');
-    const files = flagList(args, 'files');
+    // `--files a,b` OR bare positional args after the subverb
+    // (`shrk changes summary a.ts b.ts`). Positionals were dropped silently
+    // before, yielding a confident full-diff / "0 files" with exit 0.
+    const filesFlag = flagList(args, 'files');
+    const files = filesFlag.length ? filesFlag : args.positional;
     // Optional round / label propagated into the report.
     const roundLabel = flagString(args, 'round') ?? flagString(args, 'label');
     const opts = {};
@@ -79,7 +83,9 @@ async function runChangesAcceptanceReplay(args) {
     const inspection = await inspectSharkcraft({ cwd });
     const since = flagString(args, 'since');
     const staged = flagBool(args, 'staged');
-    const files = flagList(args, 'files');
+    // `--files a,b` OR bare positional args after the subverb (see above).
+    const filesFlag = flagList(args, 'files');
+    const files = filesFlag.length ? filesFlag : args.positional;
     const roundLabel = flagString(args, 'round') ?? flagString(args, 'label');
     const profileRaw = flagString(args, 'profile') ?? 'changed-only';
     const profile = (() => {
@@ -136,12 +142,16 @@ async function runChangesAcceptanceReplay(args) {
 export const changesCommand = {
     name: 'changes',
     description: 'Changes summary — grouped diff over --since/--staged/--files. Supports --round label and `changes acceptance-replay`. Read-only.',
-    usage: 'shrk changes <summary|impact|report|acceptance-replay> [--since <ref>] [--staged] [--files a,b,c] [--round <name>] [--profile changed-only|standard|strict] [--format text|markdown|json] [--output <file>]',
+    usage: 'shrk changes <summary|impact|report|acceptance-replay> [files... | --files a,b,c] [--since <ref>] [--staged] [--round <name>] [--profile changed-only|standard|strict] [--format text|markdown|json] [--output <file>]',
+    booleanFlags: new Set(['json', 'staged']),
     async run(args) {
         const sub = args.positional[0];
         const sliced = { ...args, positional: args.positional.slice(1) };
+        // Always dispatch on the sliced args so positionals AFTER the subverb
+        // become the file list (handled in the runners). Passing the un-sliced
+        // `args` here used to leak the subverb token (e.g. "summary") forward.
         if (sub === 'summary' || sub === undefined)
-            return runChangesSummary(sliced.positional.length > 0 ? sliced : args);
+            return runChangesSummary(sliced);
         if (sub === 'report')
             return runChangesSummary(sliced);
         if (sub === 'impact')

package/dist/commands/check.command.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"check.command.d.ts","sourceRoot":"","sources":["../../src/commands/check.command.ts"],"names":[],"mappings":"AAmBA,OAAO,EAML,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAuqBhC,eAAO,MAAM,YAAY,EAAE,eA2D1B,CAAC"}
+{"version":3,"file":"check.command.d.ts","sourceRoot":"","sources":["../../src/commands/check.command.ts"],"names":[],"mappings":"AAoBA,OAAO,EAML,KAAK,eAAe,EAErB,MAAM,wBAAwB,CAAC;AAkzBhC,eAAO,MAAM,YAAY,EAAE,eA0E1B,CAAC"}

package/dist/commands/check.command.js

@@ -1,13 +1,14 @@
-import { buildAiReadinessReport, buildImportHygieneReport, buildPackDoctorReport, ChangedScopeMode, diagnoseActionHints, emitImportHygieneAllowlistDraft, filterViolationsToChangedScope, ImportHygieneFindingKind, inspectSharkcraft, isTodoReason, renderImportHygieneText, resolveChangedFiles, runDoctor, suggestBoundaryFixes, } from '@shrkcrft/inspector';
+import { buildAiReadinessReport, buildImportHygieneReport, buildPackDoctorReport, ChangedScopeMode, diagnoseActionHints, emitImportHygieneAllowlistDraft, filterViolationsToChangedScope, ImportHygieneFindingKind, inspectSharkcraft, isTodoReason, renderImportHygieneText, resolveChangedFiles, resolveProjectConfig, runDoctor, suggestBoundaryFixes, } from '@shrkcrft/inspector';
 import { mkdirSync, writeFileSync, readFileSync, existsSync } from 'node:fs';
 import * as nodePath from 'node:path';
 import { flagBool, flagNumber, flagString, flagVars, resolveCwd, } from "../command-registry.js";
 import { asJson, header, kv } from "../output/format-output.js";
 import { maybeRunInWatchMode } from "../output/watch-loop.js";
+import { computeDeletedOrphans } from "../diff/deleted-orphans.js";
+import { renderWiringExplain } from "./wiring.command.js";
 import { validateTemplateVariables } from '@shrkcrft/templates';
 import { FileChangeType, planGeneration } from '@shrkcrft/generator';
-import { evaluateBoundaries, loadTsconfigPaths, runWiring, scanImports, summarizeImports, } from '@shrkcrft/boundaries';
-import { loadProjectConfig } from '@shrkcrft/config';
+import { evaluateBoundaries, explainWiring, loadTsconfigPaths, runWiring, scanImports, summarizeImports, } from '@shrkcrft/boundaries';
 function knowledgeGroup(inspection) {
     const dup = inspection.validationIssues.filter((i) => i.code === 'duplicate-id');
     const missing = inspection.validationIssues.filter((i) => i.code !== 'duplicate-id');
@@ -530,7 +531,7 @@ async function checkWiring(args) {
     // Distinguish "config is invalid" from "config valid with no wiring rules":
     // an invalid config (e.g. a malformed wiringRule) must NOT fail open with a
     // misleading "no rules configured" + exit 0.
-    const loaded = await loadProjectConfig(cwd);
+    const loaded = await resolveProjectConfig(cwd);
     if (!loaded.ok) {
         const msg = loaded.error.message;
         if (wantJson) {
@@ -542,6 +543,28 @@ async function checkWiring(args) {
         return 1;
     }
     const rules = loaded.value.config.wiringRules ?? [];
+    const planeDiagnostics = loaded.value.planeDiagnostics;
+    // `--explain <ruleId>`: dry-run ONE rule and print the declared + registered
+    // sets it extracts (file:line), the set-difference, and the verdict — the
+    // author-loop view of what the gate sees, without re-running the whole gate.
+    if (args.flags.has('explain')) {
+        const explainId = flagString(args, 'explain');
+        if (!explainId) {
+            process.stderr.write('Usage: shrk check wiring --explain <ruleId> [--json]\n');
+            return 2;
+        }
+        const rule = rules.find((r) => r.id === explainId);
+        if (!rule) {
+            const ids = rules.map((r) => r.id);
+            if (wantJson) {
+                process.stdout.write(asJson({ ok: false, error: 'not-found', ruleId: explainId, available: ids }) + '\n');
+                return 2;
+            }
+            process.stderr.write(`No wiring rule "${explainId}". Configured rules: ${ids.length > 0 ? ids.join(', ') : '(none)'}\n`);
+            return 2;
+        }
+        return renderWiringExplain(explainWiring(cwd, rule), wantJson);
+    }
     if (rules.length === 0) {
         if (wantJson) {
             process.stdout.write(asJson({ schema: 'sharkcraft.wiring/v1', rules: [], violations: [], verdict: 'pass' }) + '\n');
@@ -561,16 +584,29 @@ async function checkWiring(args) {
         });
         changedFiles = changed.files;
     }
-    const report = runWiring(cwd, rules, {
+    const reportRaw = runWiring(cwd, rules, {
         ...(changedOnly || since ? { changedOnly: true, changedFiles: changedFiles ?? [] } : {}),
         ...(only ? { only: only.split(',').map((s) => s.trim()).filter(Boolean) } : {}),
     });
+    // Surface pack-plane merge notes (missing/invalid pack rule files, dropped
+    // collisions) alongside the rule engine's own misconfiguration diagnostics.
+    const report = planeDiagnostics.length > 0
+        ? { ...reportRaw, diagnostics: [...reportRaw.diagnostics, ...planeDiagnostics] }
+        : reportRaw;
     if (wantJson) {
         process.stdout.write(asJson(report) + '\n');
         return report.verdict === 'errors' ? 1 : 0;
     }
     process.stdout.write(header('Wiring check'));
-    process.stdout.write(kv('rules evaluated', String(report.rules.length)) + '\n');
+    // `evaluated` counts rules that actually ran a comparison (globs matched >0
+    // files). When 0 rules evaluated but rules ARE configured, say so loudly —
+    // "checked nothing" must never read as the green "every token is wired" pass.
+    if (report.evaluated === 0) {
+        process.stdout.write(`  ! Nothing evaluated — ${report.rules.length} rule(s) configured but none matched files in scope` +
+            (changedOnly || since ? ' (changed-only).\n' : '.\n'));
+        return 0;
+    }
+    process.stdout.write(kv('rules evaluated', `${report.evaluated} of ${report.rules.length}`) + '\n');
     const errors = report.violations.filter((v) => v.severity === 'error').length;
     const warnings = report.violations.filter((v) => v.severity === 'warning').length;
     process.stdout.write(kv('violations', `${errors} error(s), ${warnings} warning(s)`) + '\n');
@@ -606,14 +642,108 @@ async function checkWiring(args) {
     }
     return report.verdict === 'errors' ? 1 : 0;
 }
+/**
+ * `shrk check orphans [--since <ref>] [--staged]`: first-class, diff-robust
+ * reverse-closure over REMOVED files. Reads the deleted files from the diff
+ * (vs `--since`, or the staged index with `--staged`) and queries the
+ * code-graph snapshot for surviving files that still import them or reference a
+ * symbol they declared — alias-resolved, incl. barrel re-exports. Each survivor
+ * is an error with `file:line`; the type checker misses a deleted barrel
+ * re-export or string-keyed registration, so this is a write-safety guard an
+ * agent can't replicate natively. Generalizes `impact --deleted`; pairs with
+ * the composite `finish` gate.
+ */
+async function checkOrphans(args) {
+    const cwd = resolveCwd(args);
+    const wantJson = flagBool(args, 'json');
+    const since = flagString(args, 'since');
+    const staged = flagBool(args, 'staged');
+    const scan = await computeDeletedOrphans(cwd, {
+        ...(since ? { since } : {}),
+        ...(staged ? { staged: true } : {}),
+    });
+    if (!scan.ok) {
+        if (wantJson) {
+            process.stdout.write(asJson({
+                schema: 'sharkcraft.deleted-orphans/v1',
+                error: scan.error,
+                reason: scan.reason,
+                orphans: [],
+            }) + '\n');
+            return 2;
+        }
+        process.stdout.write(header('Orphan check'));
+        process.stdout.write(scan.reason === 'diff-unavailable'
+            ? `  ✗ Cannot resolve diff: ${scan.error ?? 'unknown'}\n`
+            : `  ✗ ${scan.error ?? 'orphan check unavailable'}\n`);
+        return 2;
+    }
+    const scopeLabel = staged ? 'staged' : `vs ${scan.ref}`;
+    // Nothing deleted → there is nothing to check. Report a LOUD skip, not a
+    // green "no orphans" — "checked nothing" must never read as "verified clean".
+    if (scan.deleted.length === 0) {
+        if (wantJson) {
+            process.stdout.write(asJson({
+                schema: 'sharkcraft.deleted-orphans/v1',
+                skipped: true,
+                ref: scan.ref,
+                resolvedDeleted: [],
+                unresolvedDeleted: [],
+                orphans: [],
+                diagnostics: [`no deleted files (${scopeLabel}) — nothing to check`],
+            }) + '\n');
+            return 0;
+        }
+        process.stdout.write(header('Orphan check'));
+        process.stdout.write(`  ! Nothing deleted (${scopeLabel}) — orphan check skipped.\n`);
+        return 0;
+    }
+    const report = scan.report;
+    if (wantJson) {
+        process.stdout.write(asJson(report) + '\n');
+        return report.orphans.length > 0 ? 1 : 0;
+    }
+    process.stdout.write(header('Orphan check'));
+    process.stdout.write(kv('deleted files', `${scan.deleted.length} (${scopeLabel})`) + '\n');
+    if (report.orphans.length === 0) {
+        process.stdout.write('\nNo orphaned importers — nothing still references the deleted code. ✓\n');
+        for (const d of report.diagnostics.slice(0, 5))
+            process.stdout.write(`  ! ${d}\n`);
+        return 0;
+    }
+    process.stdout.write(`\n${report.orphans.length} surviving importer(s) still reference deleted code:\n`);
+    for (const o of report.orphans.slice(0, 100)) {
+        const loc = o.path ? `${o.path}${o.line ? `:${o.line}` : ''}` : o.id;
+        const detail = o.via === 'reference' && o.symbol ? `references \`${o.symbol}\`` : 'imports';
+        process.stdout.write(`  ✗ ${loc} ${detail} from deleted ${o.deletedFile}\n`);
+    }
+    if (report.orphans.length > 100) {
+        process.stdout.write(`  … (${report.orphans.length - 100} more)\n`);
+    }
+    for (const d of report.diagnostics.slice(0, 5))
+        process.stdout.write(`  ! ${d}\n`);
+    return 1;
+}
 // Main shrk check + subcommands
 // ────────────────────────────────────────────────────────────────────────
 export const checkCommand = {
     name: 'check',
     description: 'Run SharkCraft-level validation across knowledge / rules / templates / pipelines / packs / action hints / doctor. `check boundaries [--watch [--paths a,b] [--debounce N] [--once]]` re-runs the boundary scan on file changes.',
-    usage: 'shrk [--cwd <dir>] check [packs|pipelines|knowledge|generation|boundaries|imports|wiring] [--strict] [--min-score <0-100>] [--changed-only] [--since <ref>] [--only <ids>] [--json] [--watch [--paths <list>] [--debounce N] [--once]]',
+    usage: 'shrk [--cwd <dir>] check [packs|pipelines|knowledge|generation|boundaries|imports|wiring|orphans] [--strict] [--min-score <0-100>] [--changed-only] [--since <ref>] [--staged] [--only <ids>] [--json] [--watch [--paths <list>] [--debounce N] [--once]]',
     async run(args) {
         const sub = args.positional[0];
+        // `check generation <id> <name>` legitimately takes extra positionals;
+        // every other subverb (boundaries/imports/wiring/…) and the full sweep are
+        // flag-driven. Reject stray positional file args instead of silently
+        // dropping them and reporting a confident green — pass files via --files.
+        if (sub !== 'generation') {
+            const extras = args.positional.slice(1);
+            if (extras.length > 0) {
+                process.stderr.write(`Unexpected positional argument(s): ${extras.join(', ')}. ` +
+                    `Use --files a.ts,b.ts (or --changed-only) instead of passing files positionally.\n`);
+                return 2;
+            }
+        }
         if (sub === 'generation')
             return checkGeneration(args);
         if (sub === 'boundaries')
@@ -622,6 +752,8 @@ export const checkCommand = {
             return checkImports(args);
         if (sub === 'wiring')
             return checkWiring(args);
+        if (sub === 'orphans')
+            return checkOrphans(args);
         if (sub === 'registry-lifecycle') {
             const cwd = resolveCwd(args);
             const { buildRegistryLifecycleReport, renderRegistryLifecycleReportText } = await import('@shrkcrft/inspector');

package/dist/commands/command-catalog.d.ts

@@ -245,6 +245,17 @@ export declare function commandLifecycle(e: ICommandCatalogEntry): CommandLifecy
  * membership.
  */
 export declare function defaultShowInHelp(e: ICommandCatalogEntry): boolean;
+/**
+ * The "explain / dry-run" command family: entries that show you what a gate,
+ * ranker, or graph *sees* before you act (`search tuning explain`, `wiring
+ * explain`/`wiring test`, `boundaries explain`, `surface explain`, …). Several
+ * carry an Advanced surface, so {@link defaultShowInHelp} hides them despite
+ * being high-value — which is exactly why an agent finds them only by guessing.
+ * `shrk --full-help` lists this family in a dedicated section so they stop
+ * being hidden. Returns callable entries only (retired/deprecated/alias and
+ * R46-pruned are excluded), sorted by command.
+ */
+export declare function listExplainFamily(): readonly ICommandCatalogEntry[];
 /**
  * Short "Use this when…" line derived from `surface`, `taskRole`,
  * `preferredCommand`, `replacedBy`, and `machineOnly`. Empty string when

package/dist/commands/command-catalog.d.ts.map

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