@shepai/cli 1.136.0-pr437.9f802f1 → 1.136.0-pr438.9e52ee5

package/dist/packages/core/src/infrastructure/services/external/github-issue-creator.service.d.ts

@@ -0,0 +1,17 @@
+/**
+ * GitHub Issue Creator Service Implementation
+ *
+ * Implements IGitHubIssueService using the gh CLI for creating issues
+ * on GitHub repositories. Wraps `gh issue create` with structured
+ * error handling and result parsing.
+ */
+import type { ExecFunction } from '../git/worktree.service.js';
+import type { IGitHubIssueService, GitHubIssueCreateResult } from '../../../application/ports/output/services/github-issue-service.interface.js';
+export declare class GitHubIssueCreatorService implements IGitHubIssueService {
+    private readonly execFile;
+    constructor(execFile: ExecFunction);
+    createIssue(repo: string, title: string, body: string, labels: string[]): Promise<GitHubIssueCreateResult>;
+    private parseIssueNumberFromUrl;
+    private mapError;
+}
+//# sourceMappingURL=github-issue-creator.service.d.ts.map

package/dist/packages/core/src/infrastructure/services/external/github-issue-creator.service.d.ts.map

@@ -0,0 +1 @@
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package/dist/packages/core/src/infrastructure/services/external/github-issue-creator.service.js

@@ -0,0 +1,69 @@
+/**
+ * GitHub Issue Creator Service Implementation
+ *
+ * Implements IGitHubIssueService using the gh CLI for creating issues
+ * on GitHub repositories. Wraps `gh issue create` with structured
+ * error handling and result parsing.
+ */
+var __decorate = (this && this.__decorate) || function (decorators, target, key, desc) {
+    var c = arguments.length, r = c < 3 ? target : desc === null ? desc = Object.getOwnPropertyDescriptor(target, key) : desc, d;
+    if (typeof Reflect === "object" && typeof Reflect.decorate === "function") r = Reflect.decorate(decorators, target, key, desc);
+    else for (var i = decorators.length - 1; i >= 0; i--) if (d = decorators[i]) r = (c < 3 ? d(r) : c > 3 ? d(target, key, r) : d(target, key)) || r;
+    return c > 3 && r && Object.defineProperty(target, key, r), r;
+};
+var __metadata = (this && this.__metadata) || function (k, v) {
+    if (typeof Reflect === "object" && typeof Reflect.metadata === "function") return Reflect.metadata(k, v);
+};
+var __param = (this && this.__param) || function (paramIndex, decorator) {
+    return function (target, key) { decorator(target, key, paramIndex); }
+};
+import { injectable, inject } from 'tsyringe';
+import { GitHubIssueError, GitHubIssueErrorCode, } from '../../../application/ports/output/services/github-issue-service.interface.js';
+let GitHubIssueCreatorService = class GitHubIssueCreatorService {
+    execFile;
+    constructor(execFile) {
+        this.execFile = execFile;
+    }
+    async createIssue(repo, title, body, labels) {
+        const args = ['issue', 'create', '--repo', repo, '--title', title, '--body', body];
+        for (const label of labels) {
+            args.push('--label', label);
+        }
+        try {
+            const { stdout } = await this.execFile('gh', args);
+            const url = stdout.trim();
+            const number = this.parseIssueNumberFromUrl(url);
+            return { url, number };
+        }
+        catch (error) {
+            throw this.mapError(error);
+        }
+    }
+    parseIssueNumberFromUrl(url) {
+        const match = url.match(/\/issues\/(\d+)/);
+        return match ? parseInt(match[1], 10) : 0;
+    }
+    mapError(error) {
+        const message = error instanceof Error ? error.message : String(error);
+        const cause = error instanceof Error ? error : undefined;
+        const errnoCode = error?.code;
+        if (errnoCode === 'ENOENT' || message.includes('ENOENT')) {
+            return new GitHubIssueError('GitHub CLI (gh) is not installed. Install it from https://cli.github.com/', GitHubIssueErrorCode.GH_NOT_FOUND, cause);
+        }
+        if (message.includes('auth') || message.includes('Authentication') || message.includes('403')) {
+            return new GitHubIssueError('GitHub CLI is not authenticated. Run `gh auth login` to sign in.', GitHubIssueErrorCode.AUTH_FAILURE, cause);
+        }
+        if (message.includes('network') ||
+            message.includes('ECONNREFUSED') ||
+            message.includes('ETIMEDOUT')) {
+            return new GitHubIssueError(`Network error creating issue: ${message}`, GitHubIssueErrorCode.NETWORK_ERROR, cause);
+        }
+        return new GitHubIssueError(`Failed to create issue on ${message}`, GitHubIssueErrorCode.CREATE_FAILED, cause);
+    }
+};
+GitHubIssueCreatorService = __decorate([
+    injectable(),
+    __param(0, inject('ExecFunction')),
+    __metadata("design:paramtypes", [Function])
+], GitHubIssueCreatorService);
+export { GitHubIssueCreatorService };

package/dist/packages/core/src/infrastructure/services/external/github-repository.service.d.ts

@@ -5,7 +5,7 @@
  * checks, repository listing, cloning (with progress streaming), and URL parsing.
  */
 import type { ExecFunction } from '../git/worktree.service.js';
-import type { IGitHubRepositoryService, GitHubRepo, ListUserRepositoriesOptions, CloneOptions, ParsedGitHubUrl } from '../../../application/ports/output/services/github-repository-service.interface.js';
+import type { IGitHubRepositoryService, GitHubRepo, ListUserRepositoriesOptions, CloneOptions, ParsedGitHubUrl, ForkResult } from '../../../application/ports/output/services/github-repository-service.interface.js';
 export declare class GitHubRepositoryService implements IGitHubRepositoryService {
     private readonly execFile;
     constructor(execFile: ExecFunction);
@@ -13,6 +13,8 @@ export declare class GitHubRepositoryService implements IGitHubRepositoryService
     listUserRepositories(options?: ListUserRepositoriesOptions): Promise<GitHubRepo[]>;
     cloneRepository(nameWithOwner: string, destination: string, options?: CloneOptions): Promise<void>;
     parseGitHubUrl(url: string): ParsedGitHubUrl;
+    checkPushAccess(repoNameWithOwner: string): Promise<boolean>;
+    forkRepository(repoNameWithOwner: string): Promise<ForkResult>;
     private cleanupPartialClone;
 }
 //# sourceMappingURL=github-repository.service.d.ts.map

package/dist/packages/core/src/infrastructure/services/external/github-repository.service.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"github-repository.service.d.ts","sourceRoot":"","sources":["../../../../../../../packages/core/src/infrastructure/services/external/github-repository.service.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,KAAK,EACV,wBAAwB,EACxB,UAAU,EACV,2BAA2B,EAC3B,YAAY,EACZ,eAAe,EACf,UAAU,EACX,MAAM,mFAAmF,CAAC;AAyB3F,qBACa,uBAAwB,YAAW,wBAAwB;IAClC,OAAO,CAAC,QAAQ,CAAC,QAAQ;gBAAR,QAAQ,EAAE,YAAY;IAErE,SAAS,IAAI,OAAO,CAAC,IAAI,CAAC;IAyB1B,oBAAoB,CAAC,OAAO,CAAC,EAAE,2BAA2B,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC;IAsClF,eAAe,CACnB,aAAa,EAAE,MAAM,EACrB,WAAW,EAAE,MAAM,EACnB,OAAO,CAAC,EAAE,YAAY,GACrB,OAAO,CAAC,IAAI,CAAC;IAgDhB,cAAc,CAAC,GAAG,EAAE,MAAM,GAAG,eAAe;IA2CtC,eAAe,CAAC,iBAAiB,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAe5D,cAAc,CAAC,iBAAiB,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC;YAwBtD,mBAAmB;CAOlC"}

package/dist/packages/core/src/infrastructure/services/external/github-repository.service.js

@@ -20,7 +20,7 @@ import { injectable, inject } from 'tsyringe';
 import { resolve, normalize } from 'node:path';
 import { rm } from 'node:fs/promises';
 import { spawn } from 'node:child_process';
-import { GitHubAuthError, GitHubCloneError, GitHubRepoListError, GitHubUrlParseError, } from '../../../application/ports/output/services/github-repository-service.interface.js';
+import { GitHubAuthError, GitHubCloneError, GitHubForkError, GitHubRepoListError, GitHubUrlParseError, } from '../../../application/ports/output/services/github-repository-service.interface.js';
 // ---------------------------------------------------------------------------
 // URL regex patterns
 // ---------------------------------------------------------------------------
@@ -154,6 +154,42 @@ let GitHubRepositoryService = class GitHubRepositoryService {
             'Supported formats: https://github.com/owner/repo, ' +
             'git@github.com:owner/repo.git, or owner/repo shorthand.');
     }
+    async checkPushAccess(repoNameWithOwner) {
+        try {
+            const { stdout } = await this.execFile('gh', [
+                'api',
+                `repos/${repoNameWithOwner}`,
+                '--jq',
+                '.permissions.push',
+            ]);
+            return stdout.trim() === 'true';
+        }
+        catch {
+            // Safe fallback: assume no push access on any error (NFR-9)
+            return false;
+        }
+    }
+    async forkRepository(repoNameWithOwner) {
+        try {
+            const { stdout } = await this.execFile('gh', [
+                'repo',
+                'fork',
+                repoNameWithOwner,
+                '--clone=false',
+                '--json',
+                'nameWithOwner,url',
+            ]);
+            const parsed = JSON.parse(stdout);
+            return {
+                nameWithOwner: parsed.nameWithOwner,
+                cloneUrl: parsed.url.endsWith('.git') ? parsed.url : `${parsed.url}.git`,
+            };
+        }
+        catch (error) {
+            const cause = error instanceof Error ? error : undefined;
+            throw new GitHubForkError(`Failed to fork ${repoNameWithOwner}: ${cause?.message ?? String(error)}`, cause);
+        }
+    }
     async cleanupPartialClone(destination) {
         try {
             await rm(destination, { recursive: true, force: true });

package/dist/packages/core/src/infrastructure/services/git/git-pr.service.d.ts

@@ -5,7 +5,7 @@
  * Uses constructor dependency injection for the command executor.
  */
 import type { IGitPrService } from '../../../application/ports/output/services/git-pr-service.interface.js';
-import type { CiStatusResult, DiffSummary, FileDiff, MergeStrategy, PrCreateResult, PrStatusInfo } from '../../../application/ports/output/services/git-pr-service.interface.js';
+import type { CiStatusResult, DiffSummary, FileDiff, MergeStrategy, PrCreateArgs, PrCreateResult, PrStatusInfo } from '../../../application/ports/output/services/git-pr-service.interface.js';
 import type { ExecFunction } from './worktree.service.js';
 export declare class GitPrService implements IGitPrService {
     private readonly execFile;
@@ -18,6 +18,7 @@ export declare class GitPrService implements IGitPrService {
     commitAll(cwd: string, message: string): Promise<string>;
     push(cwd: string, branch: string, setUpstream?: boolean): Promise<void>;
     createPr(cwd: string, prYamlPath: string): Promise<PrCreateResult>;
+    createPrFromArgs(cwd: string, args: PrCreateArgs): Promise<PrCreateResult>;
     mergePr(cwd: string, prNumber: number, strategy?: MergeStrategy): Promise<void>;
     private getPrHeadBranch;
     localMergeSquash(cwd: string, featureBranch: string, baseBranch: string, commitMessage: string, hasRemote?: boolean): Promise<void>;

package/dist/packages/core/src/infrastructure/services/git/git-pr.service.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"git-pr.service.d.ts","sourceRoot":"","sources":["../../../../../../../packages/core/src/infrastructure/services/git/git-pr.service.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,wEAAwE,CAAC;AAC5G,OAAO,KAAK,EACV,cAAc,EAGd,WAAW,EACX,QAAQ,EACR,aAAa,EACb,YAAY,EACZ,cAAc,EACd,YAAY,EACb,MAAM,wEAAwE,CAAC;AAUhF,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAC;AAE1D,qBACa,YAAa,YAAW,aAAa;IACZ,OAAO,CAAC,QAAQ,CAAC,QAAQ;gBAAR,QAAQ,EAAE,YAAY;IAErE,SAAS,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAKxC,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAgBjD,gBAAgB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAgF9C,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAKnD,qBAAqB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAKpD,SAAS,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAWxD,IAAI,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;IAYvE,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC;IAuClE,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,YAAY,GAAG,OAAO,CAAC,cAAc,CAAC;IAuB1E,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,GAAE,aAAwB,GAAG,OAAO,CAAC,IAAI,CAAC;YA6BjF,eAAe;IASvB,gBAAgB,CACpB,GAAG,EAAE,MAAM,EACX,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,EAClB,aAAa,EAAE,MAAM,EACrB,SAAS,UAAQ,GAChB,OAAO,CAAC,IAAI,CAAC;IA4EV,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAUnF,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC;IAsBjE,OAAO,CACX,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,MAAM,EACd,SAAS,CAAC,EAAE,MAAM,EAClB,eAAe,CAAC,EAAE,MAAM,GACvB,OAAO,CAAC,cAAc,CAAC;IAiEpB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,YAAY,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;IAWhF,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC;IAevE,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC;IAaxE,OAAO,CAAC,gBAAgB;IAexB,OAAO,CAAC,aAAa;IAmFf,cAAc,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAoCpD,kBAAkB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC;IAc/E,WAAW,CACf,GAAG,EAAE,MAAM,EACX,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,EAClB,eAAe,CAAC,EAAE,MAAM,GACvB,OAAO,CAAC,OAAO,CAAC;IA6CnB;;;OAGG;YACW,UAAU;IAmBlB,cAAc,CAClB,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,MAAM,EACf,WAAW,SAAS,GACnB,OAAO,CAAC,MAAM,CAAC;IAWlB,OAAO,CAAC,WAAW;IAQnB,OAAO,CAAC,cAAc;IAMtB,OAAO,CAAC,gBAAgB;IAKxB,OAAO,CAAC,aAAa;IAcrB,OAAO,CAAC,YAAY;IAepB,OAAO,CAAC,oBAAoB;IAK5B,OAAO,CAAC,aAAa;CAiBtB"}

package/dist/packages/core/src/infrastructure/services/git/git-pr.service.js

@@ -184,6 +184,27 @@ let GitPrService = class GitPrService {
             throw this.parseGhError(error);
         }
     }
+    async createPrFromArgs(cwd, args) {
+        try {
+            const ghArgs = ['pr', 'create', '--title', args.title, '--body', args.body];
+            if (args.base) {
+                ghArgs.push('--base', args.base);
+            }
+            if (args.labels?.length) {
+                ghArgs.push('--label', args.labels.join(','));
+            }
+            if (args.repo) {
+                ghArgs.push('--repo', args.repo);
+            }
+            const { stdout } = await this.execFile('gh', ghArgs, { cwd });
+            const url = stdout.trim();
+            const number = this.parsePrNumberFromUrl(url);
+            return { url, number };
+        }
+        catch (error) {
+            throw this.parseGhError(error);
+        }
+    }
     async mergePr(cwd, prNumber, strategy = 'squash') {
         try {
             await this.execFile('gh', ['pr', 'merge', String(prNumber), `--${strategy}`], {

package/dist/src/presentation/cli/commands/doctor.command.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Doctor Command
+ *
+ * Diagnoses shep operation failures, opens a GitHub issue on shep-ai/cli,
+ * and optionally invokes an AI agent to attempt a fix and open a PR.
+ *
+ * Usage: shep doctor [description] [options]
+ *
+ * @example
+ * $ shep doctor "agent crashed during planning"
+ * $ shep doctor --fix
+ * $ shep doctor --no-fix
+ * $ shep doctor "broken workflow" --fix --workdir /tmp/my-fix
+ */
+import { Command } from 'commander';
+/**
+ * Create the doctor command
+ */
+export declare function createDoctorCommand(): Command;
+//# sourceMappingURL=doctor.command.d.ts.map

package/dist/src/presentation/cli/commands/doctor.command.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor.command.d.ts","sourceRoot":"","sources":["../../../../../src/presentation/cli/commands/doctor.command.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAapC;;GAEG;AACH,wBAAgB,mBAAmB,IAAI,OAAO,CAgF7C"}

package/dist/src/presentation/cli/commands/doctor.command.js

@@ -0,0 +1,129 @@
+/**
+ * Doctor Command
+ *
+ * Diagnoses shep operation failures, opens a GitHub issue on shep-ai/cli,
+ * and optionally invokes an AI agent to attempt a fix and open a PR.
+ *
+ * Usage: shep doctor [description] [options]
+ *
+ * @example
+ * $ shep doctor "agent crashed during planning"
+ * $ shep doctor --fix
+ * $ shep doctor --no-fix
+ * $ shep doctor "broken workflow" --fix --workdir /tmp/my-fix
+ */
+import { Command } from 'commander';
+import { container } from '../../../../packages/core/src/infrastructure/di/container.js';
+import { DoctorDiagnoseUseCase } from '../../../../packages/core/src/application/use-cases/doctor/doctor-diagnose.use-case.js';
+import { colors, messages, spinner } from '../ui/index.js';
+/**
+ * Create the doctor command
+ */
+export function createDoctorCommand() {
+    const cmd = new Command('doctor')
+        .description('Diagnose shep failures, open a GitHub issue, and optionally attempt a fix')
+        .argument('[description]', 'Problem description (prompted interactively if omitted)')
+        .option('--fix', 'Skip confirmation and attempt a fix automatically')
+        .option('--no-fix', 'Skip the fix attempt entirely (only create the issue)')
+        .action(async (description, options) => {
+        try {
+            // Step 1: Validate prerequisites
+            await validatePrerequisites();
+            // Step 2: Collect description (argument or interactive prompt)
+            const problemDescription = description ?? (await promptForDescription());
+            if (!problemDescription) {
+                messages.info('No description provided. Cancelled.');
+                return;
+            }
+            // Step 3: Determine fix behavior
+            const shouldFix = await resolveFix(options);
+            // Step 4: Run the use case
+            const useCase = container.resolve(DoctorDiagnoseUseCase);
+            messages.newline();
+            messages.info('Running shep doctor...');
+            messages.newline();
+            const result = await spinner('Collecting diagnostics and creating issue', () => useCase.execute({
+                description: problemDescription,
+                fix: shouldFix,
+                workdir: options.workdir,
+                featureId: options.featureId,
+            }));
+            // Step 5: Display results
+            messages.newline();
+            messages.success(`GitHub issue created: ${colors.accent(result.issueUrl)}`);
+            if (result.prUrl) {
+                messages.success(`Pull request created: ${colors.accent(result.prUrl)}`);
+                if (result.flowType) {
+                    messages.info(`Flow: ${result.flowType === 'maintainer' ? 'direct push (maintainer)' : 'fork (contributor)'}`);
+                }
+            }
+            else if (shouldFix && result.error) {
+                messages.warning(`Fix attempt failed: ${result.error}`);
+                messages.info('The issue has been created — a maintainer can review it.');
+            }
+            else if (!shouldFix) {
+                messages.info('Issue created. Use --fix to attempt an automated fix.');
+            }
+            if (result.cleanedUp) {
+                messages.info('Temporary working directory cleaned up.');
+            }
+            messages.newline();
+        }
+        catch (error) {
+            const err = error instanceof Error ? error : new Error(String(error));
+            // Handle Ctrl+C gracefully
+            if (err.message.includes('force closed') || err.message.includes('User force closed')) {
+                messages.info('Cancelled.');
+                return;
+            }
+            messages.error('Doctor failed', err);
+            process.exitCode = 1;
+        }
+    });
+    // Commander handles --no-fix by negating the --fix option, but we need
+    // explicit --workdir and --feature-id as separate options
+    cmd.option('--workdir <path>', 'Custom directory for the cloned repository');
+    cmd.option('--feature-id <id>', 'Scope diagnostics to a specific feature (by ID or prefix)');
+    return cmd;
+}
+/**
+ * Validate that gh CLI is installed and authenticated.
+ */
+async function validatePrerequisites() {
+    const toolInstaller = container.resolve('IToolInstallerService');
+    const ghStatus = await toolInstaller.checkAvailability('gh');
+    if (ghStatus.status !== 'available') {
+        throw new Error('GitHub CLI (gh) is not installed. Install it from https://cli.github.com/ and run: gh auth login');
+    }
+    const repoService = container.resolve('IGitHubRepositoryService');
+    await repoService.checkAuth();
+}
+/**
+ * Prompt the user interactively for a problem description.
+ */
+async function promptForDescription() {
+    const { input } = await import('@inquirer/prompts');
+    const description = await input({
+        message: 'Describe the problem you encountered:',
+    });
+    return description.trim() || undefined;
+}
+/**
+ * Determine whether to attempt a fix based on flags or interactive prompt.
+ */
+async function resolveFix(options) {
+    // --fix explicitly set: always fix
+    if (options.fix === true) {
+        return true;
+    }
+    // --no-fix explicitly set (Commander sets fix to false): skip fix
+    if (options.fix === false) {
+        return false;
+    }
+    // Interactive: ask the user
+    const { confirm } = await import('@inquirer/prompts');
+    return confirm({
+        message: 'Would you like shep to attempt a fix?',
+        default: false,
+    });
+}

package/dist/src/presentation/cli/index.js

@@ -42,7 +42,7 @@ import { createIdeOpenCommand } from './commands/ide-open.command.js';
 import { createInstallCommand } from './commands/install.command.js';
 import { createUpgradeCommand } from './commands/upgrade.command.js';
 import { createToolsCommand } from './commands/tools.command.js';
-import { createCoastsCommand } from './commands/coasts/index.js';
+import { createDoctorCommand } from './commands/doctor.command.js';
 import { messages } from './ui/index.js';
 // Daemon lifecycle commands
 import { createStartCommand } from './commands/start.command.js';
@@ -111,7 +111,7 @@ async function bootstrap() {
         program.addCommand(createInstallCommand());
         program.addCommand(createToolsCommand());
         program.addCommand(createUpgradeCommand());
-        program.addCommand(createCoastsCommand());
+        program.addCommand(createDoctorCommand());
         // Daemon lifecycle commands (task-9)
         program.addCommand(createStartCommand());
         program.addCommand(createStopCommand());

package/dist/src/presentation/web/components/common/repository-node/repository-node.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"repository-node.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/common/repository-node/repository-node.tsx"],"names":[],"mappings":"AAoCA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAQnE,wBAAgB,cAAc,CAAC,EAAE,IAAI,EAAE,EAAE;IAAE,IAAI,EAAE,kBAAkB,CAAC;IAAC,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAA;CAAE,2CAmd5F"}
+{"version":3,"file":"repository-node.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/common/repository-node/repository-node.tsx"],"names":[],"mappings":"AAmCA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAOnE,wBAAgB,cAAc,CAAC,EAAE,IAAI,EAAE,EAAE;IAAE,IAAI,EAAE,kBAAkB,CAAC;IAAC,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAA;CAAE,2CAqa5F"}

package/dist/src/presentation/web/components/common/repository-node/repository-node.js

@@ -3,7 +3,7 @@ import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-run
 import { useState, useCallback } from 'react';
 import { Handle, Position } from '@xyflow/react';
 import { useRouter } from 'next/navigation';
-import { Github, Plus, Code2, Terminal, FolderOpen, Trash2, Play, Square, GitBranch, GitCommitHorizontal, ArrowDown, User, RotateCcw, FileCode2, } from 'lucide-react';
+import { Github, Plus, Code2, Terminal, FolderOpen, Trash2, Play, Square, GitBranch, GitCommitHorizontal, ArrowDown, User, RotateCcw, } from 'lucide-react';
 import { cn } from '../../../lib/utils.js';
 import { ActionButton } from '../../common/action-button/index.js';
 import { Dialog, DialogClose, DialogContent, DialogDescription, DialogFooter, DialogHeader, DialogTitle, } from '../../ui/dialog.js';
@@ -12,7 +12,6 @@ import { Tooltip, TooltipContent, TooltipProvider, TooltipTrigger } from '../../
 import { useDeployAction } from '../../../hooks/use-deploy-action.js';
 import { useFeatureFlags } from '../../../hooks/feature-flags-context.js';
 import { useRepositoryActions } from './use-repository-actions.js';
-import { useCoastsActions } from './use-coasts-actions.js';
 import { FeatureSessionsDropdown, } from '../../common/feature-node/feature-sessions-dropdown.js';
 export function RepositoryNode({ data }) {
     const router = useRouter();
@@ -26,7 +25,6 @@ export function RepositoryNode({ data }) {
             repositoryPath: data.repositoryPath,
         }
         : null);
-    const coastsActions = useCoastsActions(data.repositoryPath ? { repositoryPath: data.repositoryPath } : null);
     const isDeploymentActive = deployAction.status === 'Booting' || deployAction.status === 'Ready';
     const handleCreateFromSession = useCallback((session, sessionFilePath) => {
         if (!data.repositoryPath)
@@ -87,10 +85,5 @@ export function RepositoryNode({ data }) {
                                                             ? 'Retry'
                                                             : isDeploymentActive
                                                                 ? 'Stop Dev Server'
-                                                                : 'Start Dev Server', onClick: isDeploymentActive ? deployAction.stop : deployAction.deploy, loading: deployAction.deployLoading || deployAction.stopLoading, error: false, icon: deployAction.deployError ? RotateCcw : isDeploymentActive ? Square : Play, iconOnly: true, variant: "ghost", size: "icon-xs" }) }) }), _jsx(TooltipContent, { children: isDeploymentActive ? 'Stop Dev Server' : 'Start Dev Server' })] }) })] }) })) : null, featureFlags.coastsDevServer && data.repositoryPath ? (_jsx("div", { "data-testid": "repository-node-coastfile", className: "border-t px-4 py-2", onClick: (e) => e.stopPropagation(), children: _jsxs("div", { className: "flex items-center gap-2 text-xs", children: [_jsx("span", { className: "text-muted-foreground", children: coastsActions.coastfileExists ? 'Coastfile' : 'No Coastfile' }), _jsx(TooltipProvider, { children: _jsxs(Tooltip, { children: [_jsx(TooltipTrigger, { asChild: true, children: _jsx("span", { className: "ml-auto flex items-center", children: _jsx(ActionButton, { label: coastsActions.coastfileExists
-                                                            ? 'Regenerate Coastfile'
-                                                            : 'Generate Coastfile', onClick: coastsActions.generateCoastfile, loading: coastsActions.generating || coastsActions.checkLoading, error: !!coastsActions.error, icon: FileCode2, iconOnly: true, variant: "ghost", size: "icon-xs" }) }) }), _jsx(TooltipContent, { children: coastsActions.error ??
-                                                    (coastsActions.coastfileExists
-                                                        ? 'Regenerate Coastfile'
-                                                        : 'Generate Coastfile') })] }) })] }) })) : null] }), data.onAdd || data.showHandles ? (_jsx(Handle, { type: "source", position: Position.Right, isConnectable: !data.showHandles, className: "opacity-0!", style: { top: 70 } })) : null] }));
+                                                                : 'Start Dev Server', onClick: isDeploymentActive ? deployAction.stop : deployAction.deploy, loading: deployAction.deployLoading || deployAction.stopLoading, error: false, icon: deployAction.deployError ? RotateCcw : isDeploymentActive ? Square : Play, iconOnly: true, variant: "ghost", size: "icon-xs" }) }) }), _jsx(TooltipContent, { children: isDeploymentActive ? 'Stop Dev Server' : 'Start Dev Server' })] }) })] }) })) : null] }), data.onAdd || data.showHandles ? (_jsx(Handle, { type: "source", position: Position.Right, isConnectable: !data.showHandles, className: "opacity-0!", style: { top: 70 } })) : null] }));
 }

package/dist/src/presentation/web/components/features/settings/feature-flags-settings-section.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"feature-flags-settings-section.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/feature-flags-settings-section.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,sCAAsC,CAAC;AAkCzE,MAAM,WAAW,gCAAgC;IAC/C,YAAY,EAAE,YAAY,CAAC;CAC5B;AAED,wBAAgB,2BAA2B,CAAC,EAAE,YAAY,EAAE,EAAE,gCAAgC,2CAgE7F"}
+{"version":3,"file":"feature-flags-settings-section.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/feature-flags-settings-section.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,sCAAsC,CAAC;AA8BzE,MAAM,WAAW,gCAAgC;IAC/C,YAAY,EAAE,YAAY,CAAC;CAC5B;AAED,wBAAgB,2BAA2B,CAAC,EAAE,YAAY,EAAE,EAAE,gCAAgC,2CAgE7F"}

package/dist/src/presentation/web/components/features/settings/feature-flags-settings-section.js

@@ -14,7 +14,6 @@ const FLAG_DESCRIPTIONS = {
     githubImport: 'Enable GitHub repository import in the web UI',
     adoptBranch: 'Enable the ability to adopt existing branches as tracked features',
     reactFileManager: 'Use the built-in React file manager instead of the native OS folder picker. Also serves as automatic fallback when the native picker is unavailable.',
-    coastsDevServer: 'Enable Coasts containerized runtime isolation for the dev server, providing per-worktree isolation via Docker containers',
 };
 const FLAG_LABELS = {
     skills: 'Skills',
@@ -23,7 +22,6 @@ const FLAG_LABELS = {
     githubImport: 'GitHub Import',
     adoptBranch: 'Adopt Branch',
     reactFileManager: 'React File Manager',
-    coastsDevServer: 'Coasts Dev Server',
 };
 const FLAG_KEYS = [
     'skills',
@@ -32,7 +30,6 @@ const FLAG_KEYS = [
     'githubImport',
     'adoptBranch',
     'reactFileManager',
-    'coastsDevServer',
 ];
 export function FeatureFlagsSettingsSection({ featureFlags }) {
     const [flags, setFlags] = useState({ ...featureFlags });

package/dist/src/presentation/web/components/features/settings/feature-flags-settings-section.stories.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"feature-flags-settings-section.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/feature-flags-settings-section.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,2BAA2B,EAAE,MAAM,kCAAkC,CAAC;AAE/E,QAAA,MAAM,IAAI;;;;;;;CAO0C,CAAC;AAErD,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAYrB,CAAC;AAEF,eAAO,MAAM,UAAU,EAAE,KAYxB,CAAC;AAEF,eAAO,MAAM,WAAW,EAAE,KAYzB,CAAC"}
+{"version":3,"file":"feature-flags-settings-section.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/feature-flags-settings-section.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,2BAA2B,EAAE,MAAM,kCAAkC,CAAC;AAE/E,QAAA,MAAM,IAAI;;;;;;;CAO0C,CAAC;AAErD,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAWrB,CAAC;AAEF,eAAO,MAAM,UAAU,EAAE,KAWxB,CAAC;AAEF,eAAO,MAAM,WAAW,EAAE,KAWzB,CAAC"}

package/dist/src/presentation/web/components/features/settings/feature-flags-settings-section.stories.js

@@ -17,7 +17,6 @@ export const Default = {
             githubImport: false,
             adoptBranch: false,
             reactFileManager: false,
-            coastsDevServer: false,
         },
     },
 };
@@ -30,7 +29,6 @@ export const AllEnabled = {
             githubImport: true,
             adoptBranch: true,
             reactFileManager: true,
-            coastsDevServer: true,
         },
     },
 };
@@ -43,7 +41,6 @@ export const AllDisabled = {
             githubImport: false,
             adoptBranch: false,
             reactFileManager: false,
-            coastsDevServer: false,
         },
     },
 };

package/dist/src/presentation/web/components/features/settings/settings-page-client.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"settings-page-client.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.tsx"],"names":[],"mappings":"AAkCA,OAAO,KAAK,EACV,QAAQ,EAGT,MAAM,sCAAsC,CAAC;AAC9C,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,uCAAuC,CAAC;AA2B/E,MAAM,WAAW,uBAAuB;IACtC,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,kBAAkB,CAAC,EAAE,iBAAiB,EAAE,CAAC;CAC1C;AA6QD,wBAAgB,kBAAkB,CAAC,EACjC,QAAQ,EACR,QAAQ,EACR,UAAU,EACV,kBAAkB,GACnB,EAAE,uBAAuB,2CA6pCzB"}
+{"version":3,"file":"settings-page-client.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.tsx"],"names":[],"mappings":"AAkCA,OAAO,KAAK,EACV,QAAQ,EAGT,MAAM,sCAAsC,CAAC;AAC9C,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,uCAAuC,CAAC;AA2B/E,MAAM,WAAW,uBAAuB;IACtC,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,kBAAkB,CAAC,EAAE,iBAAiB,EAAE,CAAC;CAC1C;AA6QD,wBAAgB,kBAAkB,CAAC,EACjC,QAAQ,EACR,QAAQ,EACR,UAAU,EACV,kBAAkB,GACnB,EAAE,uBAAuB,2CAgpCzB"}

package/dist/src/presentation/web/components/features/settings/settings-page-client.js

@@ -122,7 +122,6 @@ export function SettingsPageClient({ settings, shepHome, dbFileSize, availableTe
         githubImport: false,
         adoptBranch: false,
         reactFileManager: false,
-        coastsDevServer: false,
     };
     // Agent state
     const [agentType, setAgentType] = useState(settings.agent.type);
@@ -502,10 +501,6 @@ export function SettingsPageClient({ settings, shepHome, dbFileSize, availableTe
                                             const newFlags = { ...flags, reactFileManager: v };
                                             setFlags(newFlags);
                                             save({ featureFlags: newFlags });
-                                        } }), _jsx(SwitchRow, { label: "Coasts Dev Server", description: "Enable Coasts containerized runtime isolation for the dev server", id: "flag-coastsDevServer", testId: "switch-flag-coastsDevServer", checked: flags.coastsDevServer, onChange: (v) => {
-                                            const newFlags = { ...flags, coastsDevServer: v };
-                                            setFlags(newFlags);
-                                            save({ featureFlags: newFlags });
                                         } })] }), _jsx(SectionHint, { children: "Experimental features that are still under development. Enable at your own risk \u2014 they may change or be removed in future versions. Debug mode adds verbose logging useful for troubleshooting." })] }), _jsxs("div", { id: "section-database", className: "grid scroll-mt-18 grid-cols-1 gap-x-5 rounded-lg lg:grid-cols-[1fr_280px]", children: [_jsxs(SettingsSection, { icon: Database, title: "Database", description: "Local storage information", testId: "database-settings-section", children: [_jsx(SettingsRow, { label: "Location", description: "Path to the local SQLite database", children: _jsx("span", { className: "text-muted-foreground max-w-50 truncate font-mono text-xs", "data-testid": "shep-home-path", children: shepHome }) }), _jsx(SettingsRow, { label: "Size", children: _jsx("span", { className: "text-muted-foreground text-xs", "data-testid": "db-file-size", children: dbFileSize }) })] }), _jsx(SectionHint, { links: [
                                     {
                                         label: 'Settings service',

package/dist/src/presentation/web/components/features/settings/settings-page-client.stories.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"settings-page-client.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAM5D,QAAA,MAAM,IAAI;;;;;;;CAOiC,CAAC;AAE5C,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAMrB,CAAC;AAEF,eAAO,MAAM,WAAW,EAAE,KAqBzB,CAAC;AAEF,eAAO,MAAM,eAAe,EAAE,KAa7B,CAAC;AAEF,eAAO,MAAM,cAAc,EAAE,KAsB5B,CAAC"}
+{"version":3,"file":"settings-page-client.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAM5D,QAAA,MAAM,IAAI;;;;;;;CAOiC,CAAC;AAE5C,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAMrB,CAAC;AAEF,eAAO,MAAM,WAAW,EAAE,KAoBzB,CAAC;AAEF,eAAO,MAAM,eAAe,EAAE,KAa7B,CAAC;AAEF,eAAO,MAAM,cAAc,EAAE,KAsB5B,CAAC"}

package/dist/src/presentation/web/components/features/settings/settings-page-client.stories.js

@@ -33,7 +33,6 @@ export const AllSections = {
                 githubImport: false,
                 adoptBranch: false,
                 reactFileManager: false,
-                coastsDevServer: false,
             },
         },
         shepHome: '/opt/shep',

package/dist/src/presentation/web/components/layouts/app-sidebar/app-sidebar.stories.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"app-sidebar.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/layouts/app-sidebar/app-sidebar.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAEvD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAgB3C,QAAA,MAAM,IAAI,EAAE,IAAI,CAAC,OAAO,UAAU,CAyBjC,CAAC;AAEF,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAmDnC,eAAO,MAAM,OAAO,EAAE,KAIrB,CAAC;AAEF,eAAO,MAAM,oBAAoB,EAAE,KAIlC,CAAC;AAEF,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAC;AAEF,eAAO,MAAM,KAAK,EAAE,KAInB,CAAC;AAEF,eAAO,MAAM,aAAa,EAAE,KAiB3B,CAAC;AAEF,eAAO,MAAM,OAAO,EAAE,KAQrB,CAAC"}
+{"version":3,"file":"app-sidebar.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/layouts/app-sidebar/app-sidebar.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAEvD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAe3C,QAAA,MAAM,IAAI,EAAE,IAAI,CAAC,OAAO,UAAU,CAyBjC,CAAC;AAEF,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAmDnC,eAAO,MAAM,OAAO,EAAE,KAIrB,CAAC;AAEF,eAAO,MAAM,oBAAoB,EAAE,KAIlC,CAAC;AAEF,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAC;AAEF,eAAO,MAAM,KAAK,EAAE,KAInB,CAAC;AAEF,eAAO,MAAM,aAAa,EAAE,KAiB3B,CAAC;AAEF,eAAO,MAAM,OAAO,EAAE,KAQrB,CAAC"}

package/dist/src/presentation/web/components/layouts/app-sidebar/app-sidebar.stories.js

@@ -8,7 +8,6 @@ const defaultFeatureFlags = {
     githubImport: false,
     adoptBranch: false,
     reactFileManager: false,
-    coastsDevServer: false,
 };
 const meta = {
     title: 'Layout/AppSidebar',