@shepai/cli 1.116.3 → 1.117.0

package/apis/json-schema/AnalyzeRepoTimeouts.yaml

@@ -0,0 +1,10 @@
+$schema: https://json-schema.org/draft/2020-12/schema
+$id: AnalyzeRepoTimeouts.yaml
+type: object
+properties:
+  analyzeMs:
+    type: integer
+    minimum: -2147483648
+    maximum: 2147483647
+    description: "Timeout for the repository analysis stage (default: 600000)"
+description: Timeout overrides for the analyze-repository agent (all values in milliseconds)

package/apis/json-schema/SdlcLifecycle.yaml

@@ -11,5 +11,6 @@ enum:
   - Review
   - Maintain
   - Blocked
+  - Pending
   - Deleting
 description: Software Development Lifecycle stages for feature progression

package/apis/json-schema/StageTimeouts.yaml

@@ -0,0 +1,35 @@
+$schema: https://json-schema.org/draft/2020-12/schema
+$id: StageTimeouts.yaml
+type: object
+properties:
+  analyzeMs:
+    type: integer
+    minimum: -2147483648
+    maximum: 2147483647
+    description: "Timeout for the analyze stage (default: 600000)"
+  requirementsMs:
+    type: integer
+    minimum: -2147483648
+    maximum: 2147483647
+    description: "Timeout for the requirements stage (default: 600000)"
+  researchMs:
+    type: integer
+    minimum: -2147483648
+    maximum: 2147483647
+    description: "Timeout for the research stage (default: 600000)"
+  planMs:
+    type: integer
+    minimum: -2147483648
+    maximum: 2147483647
+    description: "Timeout for the plan stage (default: 600000)"
+  implementMs:
+    type: integer
+    minimum: -2147483648
+    maximum: 2147483647
+    description: "Timeout for the implement stage (default: 600000)"
+  mergeMs:
+    type: integer
+    minimum: -2147483648
+    maximum: 2147483647
+    description: "Timeout for the merge stage (default: 600000)"
+description: Per-stage timeout overrides for the feature agent workflow (all values in milliseconds)

package/apis/json-schema/WorkflowConfig.yaml

@@ -24,6 +24,12 @@ properties:
     minimum: -2147483648
     maximum: 2147483647
     description: "Maximum characters of CI failure logs to pass to the executor (default: 50000)"
+  stageTimeouts:
+    $ref: StageTimeouts.yaml
+    description: "Per-stage timeout overrides for the feature agent (default: 600000 = 10 minutes per stage)"
+  analyzeRepoTimeouts:
+    $ref: AnalyzeRepoTimeouts.yaml
+    description: "Timeout overrides for the analyze-repository agent (default: 600000 = 10 minutes)"
   enableEvidence:
     type: boolean
     default: false

package/dist/packages/core/src/application/use-cases/features/create/create-feature.use-case.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"create-feature.use-case.d.ts","sourceRoot":"","sources":["../../../../../../../../packages/core/src/application/use-cases/features/create/create-feature.use-case.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAIH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wCAAwC,CAAC;AAMtE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,oEAAoE,CAAC;AAC7G,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,8DAA8D,CAAC;AACrG,OAAO,KAAK,EAAE,2BAA2B,EAAE,MAAM,iEAAiE,CAAC;AACnH,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,gEAAgE,CAAC;AAC1G,OAAO,KAAK,EAAE,uBAAuB,EAAE,MAAM,8DAA8D,CAAC;AAC5G,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,uEAAuE,CAAC;AACnH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,4DAA4D,CAAC;AAChG,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,2DAA2D,CAAC;AAGjG,OAAO,EAAE,wBAAwB,EAAE,MAAM,mEAAmE,CAAC;AAC7G,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,KAAK,EAAE,kBAAkB,EAAE,mBAAmB,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAE9F,qBACa,oBAAoB;IAG7B,OAAO,CAAC,QAAQ,CAAC,WAAW;IAE5B,OAAO,CAAC,QAAQ,CAAC,eAAe;IAEhC,OAAO,CAAC,QAAQ,CAAC,YAAY;IAE7B,OAAO,CAAC,QAAQ,CAAC,aAAa;IAE9B,OAAO,CAAC,QAAQ,CAAC,eAAe;IAEhC,OAAO,CAAC,QAAQ,CAAC,iBAAiB;IAElC,OAAO,CAAC,QAAQ,CAAC,YAAY;IAE7B,OAAO,CAAC,QAAQ,CAAC,cAAc;IAE/B,OAAO,CAAC,QAAQ,CAAC,YAAY;IAE7B,OAAO,CAAC,QAAQ,CAAC,iBAAiB;IAElC,OAAO,CAAC,QAAQ,CAAC,cAAc;gBApBd,WAAW,EAAE,kBAAkB,EAE/B,eAAe,EAAE,gBAAgB,EAEjC,YAAY,EAAE,2BAA2B,EAEzC,aAAa,EAAE,mBAAmB,EAElC,eAAe,EAAE,uBAAuB,EAExC,iBAAiB,EAAE,iBAAiB,EAEpC,YAAY,EAAE,YAAY,EAE1B,cAAc,EAAE,qBAAqB,EAErC,YAAY,EAAE,aAAa,EAE3B,iBAAiB,EAAE,wBAAwB,EAE3C,cAAc,EAAE,eAAe;IAGlD;;;OAGG;IACG,OAAO,CAAC,KAAK,EAAE,kBAAkB,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAMtE;;;;OAIG;IACG,YAAY,CAAC,KAAK,EAAE,kBAAkB,GAAG,OAAO,CAAC,kBAAkB,CAAC;IAmI1E;;;OAGG;IACG,kBAAkB,CACtB,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,kBAAkB,EACzB,WAAW,EAAE,OAAO,GACnB,OAAO,CAAC;QAAE,OAAO,CAAC,EAAE,MAAM,CAAC;QAAC,cAAc,EAAE,OAAO,CAAA;KAAE,CAAC;CAgI1D"}

package/dist/packages/core/src/application/use-cases/features/create/create-feature.use-case.js

@@ -80,6 +80,12 @@ let CreateFeatureUseCase = class CreateFeatureUseCase {
             : SdlcLifecycle.Requirements;
         let shouldSpawn = true;
         let effectiveRepoPath = input.repositoryPath.replace(/\\/g, '/');
+        // Pending flag takes precedence — user explicitly defers agent execution.
+        // Parent gate validation is deferred to StartFeatureUseCase.
+        if (input.pending) {
+            initialLifecycle = SdlcLifecycle.Pending;
+            shouldSpawn = false;
+        }
         if (input.parentId) {
             const parent = await this.featureRepo.findById(input.parentId);
             if (!parent) {
@@ -97,14 +103,17 @@ let CreateFeatureUseCase = class CreateFeatureUseCase {
                 const ancestor = await this.featureRepo.findById(cursor);
                 cursor = ancestor?.parentId ?? undefined;
             }
-            if (parent.lifecycle === SdlcLifecycle.Blocked ||
-                !POST_IMPLEMENTATION.has(parent.lifecycle)) {
-                initialLifecycle = SdlcLifecycle.Blocked;
-                shouldSpawn = false;
-            }
-            else {
-                initialLifecycle = SdlcLifecycle.Started;
-                shouldSpawn = true;
+            // Skip gate logic when pending — parent gate is deferred to start time
+            if (!input.pending) {
+                if (parent.lifecycle === SdlcLifecycle.Blocked ||
+                    !POST_IMPLEMENTATION.has(parent.lifecycle)) {
+                    initialLifecycle = SdlcLifecycle.Blocked;
+                    shouldSpawn = false;
+                }
+                else {
+                    initialLifecycle = SdlcLifecycle.Started;
+                    shouldSpawn = true;
+                }
             }
         }
         // Resolve or create repository entity for this path

package/dist/packages/core/src/application/use-cases/features/create/types.d.ts

@@ -13,6 +13,8 @@ export interface CreateFeatureInput {
     description?: string;
     /** When true, skip SDLC phases and implement directly from the user prompt. */
     fast?: boolean;
+    /** When true, create feature in Pending state — fully initialized but agent not spawned. */
+    pending?: boolean;
     /** Optional agent type override (overrides settings.agent.type). */
     agentType?: string;
     /** Optional model identifier forwarded to the agent executor for this invocation. */

package/dist/packages/core/src/application/use-cases/features/create/types.d.ts.map

@@ -1 +1 @@
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package/dist/packages/core/src/application/use-cases/features/start-feature.use-case.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Start Feature Use Case
+ *
+ * Transitions a Pending feature to its active lifecycle and spawns
+ * the agent. Validates lifecycle state, checks parent dependency
+ * gates, and reuses the existing AgentRun record.
+ */
+import type { Feature, AgentRun } from '../../../domain/generated/output.js';
+import type { IFeatureRepository } from '../../ports/output/repositories/feature-repository.interface.js';
+import type { IAgentRunRepository } from '../../ports/output/agents/agent-run-repository.interface.js';
+import type { IFeatureAgentProcessService } from '../../ports/output/agents/feature-agent-process.interface.js';
+import type { IWorktreeService } from '../../ports/output/services/worktree-service.interface.js';
+export interface StartFeatureResult {
+    feature: Feature;
+    agentRun: AgentRun;
+}
+export declare class StartFeatureUseCase {
+    private readonly featureRepo;
+    private readonly runRepo;
+    private readonly processService;
+    private readonly worktreeService;
+    constructor(featureRepo: IFeatureRepository, runRepo: IAgentRunRepository, processService: IFeatureAgentProcessService, worktreeService: IWorktreeService);
+    execute(featureId: string): Promise<StartFeatureResult>;
+}
+//# sourceMappingURL=start-feature.use-case.d.ts.map

package/dist/packages/core/src/application/use-cases/features/start-feature.use-case.d.ts.map

@@ -0,0 +1 @@
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package/dist/packages/core/src/application/use-cases/features/start-feature.use-case.js

@@ -0,0 +1,116 @@
+/**
+ * Start Feature Use Case
+ *
+ * Transitions a Pending feature to its active lifecycle and spawns
+ * the agent. Validates lifecycle state, checks parent dependency
+ * gates, and reuses the existing AgentRun record.
+ */
+var __decorate = (this && this.__decorate) || function (decorators, target, key, desc) {
+    var c = arguments.length, r = c < 3 ? target : desc === null ? desc = Object.getOwnPropertyDescriptor(target, key) : desc, d;
+    if (typeof Reflect === "object" && typeof Reflect.decorate === "function") r = Reflect.decorate(decorators, target, key, desc);
+    else for (var i = decorators.length - 1; i >= 0; i--) if (d = decorators[i]) r = (c < 3 ? d(r) : c > 3 ? d(target, key, r) : d(target, key)) || r;
+    return c > 3 && r && Object.defineProperty(target, key, r), r;
+};
+var __metadata = (this && this.__metadata) || function (k, v) {
+    if (typeof Reflect === "object" && typeof Reflect.metadata === "function") return Reflect.metadata(k, v);
+};
+var __param = (this && this.__param) || function (paramIndex, decorator) {
+    return function (target, key) { decorator(target, key, paramIndex); }
+};
+import { injectable, inject } from 'tsyringe';
+import { SdlcLifecycle } from '../../../domain/generated/output.js';
+import { POST_IMPLEMENTATION } from '../../../domain/lifecycle-gates.js';
+let StartFeatureUseCase = class StartFeatureUseCase {
+    featureRepo;
+    runRepo;
+    processService;
+    worktreeService;
+    constructor(featureRepo, runRepo, processService, worktreeService) {
+        this.featureRepo = featureRepo;
+        this.runRepo = runRepo;
+        this.processService = processService;
+        this.worktreeService = worktreeService;
+    }
+    async execute(featureId) {
+        // Resolve feature by exact ID or prefix
+        const feature = (await this.featureRepo.findById(featureId)) ??
+            (await this.featureRepo.findByIdPrefix(featureId));
+        if (!feature) {
+            throw new Error(`Feature not found: ${featureId}`);
+        }
+        // Validate lifecycle is Pending
+        if (feature.lifecycle !== SdlcLifecycle.Pending) {
+            throw new Error(`Feature "${feature.name}" is not in Pending state (current: ${feature.lifecycle}). Only pending features can be started.`);
+        }
+        // Validate agentRunId exists
+        if (!feature.agentRunId) {
+            throw new Error(`No agent run found for feature "${feature.name}"`);
+        }
+        const agentRun = await this.runRepo.findById(feature.agentRunId);
+        if (!agentRun) {
+            throw new Error(`No agent run found for feature "${feature.name}"`);
+        }
+        // Wait for specPath — the web UI creates features in two phases: a fast
+        // DB record (specPath: '') followed by background initialization that
+        // populates specPath. If the user clicks "Start" before Phase 2 finishes,
+        // specPath will still be empty. Poll the DB briefly to let it complete.
+        let resolved = feature;
+        if (!resolved.specPath) {
+            const MAX_POLLS = 20;
+            const POLL_INTERVAL_MS = 500;
+            for (let i = 0; i < MAX_POLLS; i++) {
+                await new Promise((r) => setTimeout(r, POLL_INTERVAL_MS));
+                const refreshed = await this.featureRepo.findById(resolved.id);
+                if (refreshed?.specPath) {
+                    resolved = refreshed;
+                    break;
+                }
+            }
+            if (!resolved.specPath) {
+                throw new Error(`Feature "${resolved.name}" is still being initialized — please try again shortly`);
+            }
+        }
+        // Check parent gate if feature has a parent
+        let targetLifecycle = resolved.fast ? SdlcLifecycle.Implementation : SdlcLifecycle.Requirements;
+        let shouldSpawn = true;
+        if (resolved.parentId) {
+            const parent = await this.featureRepo.findById(resolved.parentId);
+            if (!parent ||
+                parent.lifecycle === SdlcLifecycle.Blocked ||
+                !POST_IMPLEMENTATION.has(parent.lifecycle)) {
+                targetLifecycle = SdlcLifecycle.Blocked;
+                shouldSpawn = false;
+            }
+        }
+        // Transition lifecycle
+        const updatedFeature = {
+            ...resolved,
+            lifecycle: targetLifecycle,
+            updatedAt: new Date(),
+        };
+        await this.featureRepo.update(updatedFeature);
+        // Spawn agent if not blocked
+        if (shouldSpawn) {
+            const worktreePath = this.worktreeService.getWorktreePath(resolved.repositoryPath, resolved.branch);
+            this.processService.spawn(resolved.id, resolved.agentRunId, resolved.repositoryPath, resolved.specPath, worktreePath, {
+                approvalGates: resolved.approvalGates,
+                threadId: agentRun.threadId,
+                push: resolved.push,
+                openPr: resolved.openPr,
+                agentType: agentRun.agentType,
+                ...(resolved.fast ? { fast: true } : {}),
+                ...(agentRun.modelId ? { model: agentRun.modelId } : {}),
+            });
+        }
+        return { feature: updatedFeature, agentRun };
+    }
+};
+StartFeatureUseCase = __decorate([
+    injectable(),
+    __param(0, inject('IFeatureRepository')),
+    __param(1, inject('IAgentRunRepository')),
+    __param(2, inject('IFeatureAgentProcessService')),
+    __param(3, inject('IWorktreeService')),
+    __metadata("design:paramtypes", [Object, Object, Object, Object])
+], StartFeatureUseCase);
+export { StartFeatureUseCase };

package/dist/packages/core/src/domain/generated/output.d.ts

@@ -308,6 +308,44 @@ export type ApprovalGateDefaults = {
      */
     pushOnImplementationComplete: boolean;
 };
+/**
+ * Per-stage timeout overrides for the feature agent workflow (all values in milliseconds)
+ */
+export type StageTimeouts = {
+    /**
+     * Timeout for the analyze stage (default: 600000)
+     */
+    analyzeMs?: number;
+    /**
+     * Timeout for the requirements stage (default: 600000)
+     */
+    requirementsMs?: number;
+    /**
+     * Timeout for the research stage (default: 600000)
+     */
+    researchMs?: number;
+    /**
+     * Timeout for the plan stage (default: 600000)
+     */
+    planMs?: number;
+    /**
+     * Timeout for the implement stage (default: 600000)
+     */
+    implementMs?: number;
+    /**
+     * Timeout for the merge stage (default: 600000)
+     */
+    mergeMs?: number;
+};
+/**
+ * Timeout overrides for the analyze-repository agent (all values in milliseconds)
+ */
+export type AnalyzeRepoTimeouts = {
+    /**
+     * Timeout for the repository analysis stage (default: 600000)
+     */
+    analyzeMs?: number;
+};
 /**
  * Global workflow configuration defaults
  */
@@ -332,6 +370,14 @@ export type WorkflowConfig = {
      * Maximum characters of CI failure logs to pass to the executor (default: 50000)
      */
     ciLogMaxChars?: number;
+    /**
+     * Per-stage timeout overrides for the feature agent (default: 600000 = 10 minutes per stage)
+     */
+    stageTimeouts?: StageTimeouts;
+    /**
+     * Timeout overrides for the analyze-repository agent (default: 600000 = 10 minutes)
+     */
+    analyzeRepoTimeouts?: AnalyzeRepoTimeouts;
     /**
      * Enable evidence collection after implementation (default: false)
      */
@@ -649,6 +695,7 @@ export declare enum SdlcLifecycle {
     Review = "Review",
     Maintain = "Maintain",
     Blocked = "Blocked",
+    Pending = "Pending",
     Deleting = "Deleting"
 }
 /**

package/dist/packages/core/src/domain/generated/output.d.ts.map

@@ -1 +1 @@
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package/dist/packages/core/src/domain/generated/output.js

@@ -80,6 +80,7 @@ export var SdlcLifecycle;
     SdlcLifecycle["Review"] = "Review";
     SdlcLifecycle["Maintain"] = "Maintain";
     SdlcLifecycle["Blocked"] = "Blocked";
+    SdlcLifecycle["Pending"] = "Pending";
     SdlcLifecycle["Deleting"] = "Deleting";
 })(SdlcLifecycle || (SdlcLifecycle = {}));
 export var PrStatus;

package/dist/packages/core/src/domain/lifecycle-gates.d.ts

@@ -11,6 +11,9 @@ import { SdlcLifecycle } from './generated/output.js';
  *
  * A parent whose lifecycle is a member of this set satisfies Gate 1:
  * directly-blocked children may transition from Blocked to Started.
+ *
+ * Note: Pending is intentionally excluded — pending features are
+ * user-deferred and cannot unblock child features.
  */
 export declare const POST_IMPLEMENTATION: Set<SdlcLifecycle>;
 //# sourceMappingURL=lifecycle-gates.d.ts.map

package/dist/packages/core/src/domain/lifecycle-gates.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lifecycle-gates.d.ts","sourceRoot":"","sources":["../../../../../packages/core/src/domain/lifecycle-gates.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AAEnD;;;;;GAKG;AACH,eAAO,MAAM,mBAAmB,oBAI9B,CAAC"}
+{"version":3,"file":"lifecycle-gates.d.ts","sourceRoot":"","sources":["../../../../../packages/core/src/domain/lifecycle-gates.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AAEnD;;;;;;;;GAQG;AACH,eAAO,MAAM,mBAAmB,oBAI9B,CAAC"}

package/dist/packages/core/src/domain/lifecycle-gates.js

@@ -11,6 +11,9 @@ import { SdlcLifecycle } from './generated/output.js';
  *
  * A parent whose lifecycle is a member of this set satisfies Gate 1:
  * directly-blocked children may transition from Blocked to Started.
+ *
+ * Note: Pending is intentionally excluded — pending features are
+ * user-deferred and cannot unblock child features.
  */
 export const POST_IMPLEMENTATION = new Set([
     SdlcLifecycle.Implementation,

package/dist/packages/core/src/infrastructure/di/container.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"container.d.ts","sourceRoot":"","sources":["../../../../../../packages/core/src/infrastructure/di/container.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,kBAAkB,CAAC;AAC1B,OAAO,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAmHrC;;;;;;GAMG;AACH,wBAAsB,mBAAmB,IAAI,OAAO,CAAC,OAAO,SAAS,CAAC,CA6TrE;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,IAAI,OAAO,CAEhD;AAED;;;GAGG;AACH,OAAO,EAAE,SAAS,EAAE,CAAC"}
+{"version":3,"file":"container.d.ts","sourceRoot":"","sources":["../../../../../../packages/core/src/infrastructure/di/container.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,kBAAkB,CAAC;AAC1B,OAAO,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAoHrC;;;;;;GAMG;AACH,wBAAsB,mBAAmB,IAAI,OAAO,CAAC,OAAO,SAAS,CAAC,CAiUrE;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,IAAI,OAAO,CAEhD;AAED;;;GAGG;AACH,OAAO,EAAE,SAAS,EAAE,CAAC"}

package/dist/packages/core/src/infrastructure/di/container.js

@@ -64,6 +64,7 @@ import { ListFeaturesUseCase } from '../../application/use-cases/features/list-f
 import { ShowFeatureUseCase } from '../../application/use-cases/features/show-feature.use-case.js';
 import { DeleteFeatureUseCase } from '../../application/use-cases/features/delete-feature.use-case.js';
 import { ResumeFeatureUseCase } from '../../application/use-cases/features/resume-feature.use-case.js';
+import { StartFeatureUseCase } from '../../application/use-cases/features/start-feature.use-case.js';
 import { GetFeatureArtifactUseCase } from '../../application/use-cases/features/get-feature-artifact.use-case.js';
 import { GetResearchArtifactUseCase } from '../../application/use-cases/features/get-research-artifact.use-case.js';
 import { GetPlanArtifactUseCase } from '../../application/use-cases/features/get-plan-artifact.use-case.js';
@@ -276,6 +277,7 @@ export async function initializeContainer() {
     container.registerSingleton(ShowFeatureUseCase);
     container.registerSingleton(DeleteFeatureUseCase);
     container.registerSingleton(ResumeFeatureUseCase);
+    container.registerSingleton(StartFeatureUseCase);
     container.registerSingleton(GetFeatureArtifactUseCase);
     container.registerSingleton(GetResearchArtifactUseCase);
     container.registerSingleton(GetPlanArtifactUseCase);
@@ -323,6 +325,9 @@ export async function initializeContainer() {
     container.register('ResumeFeatureUseCase', {
         useFactory: (c) => c.resolve(ResumeFeatureUseCase),
     });
+    container.register('StartFeatureUseCase', {
+        useFactory: (c) => c.resolve(StartFeatureUseCase),
+    });
     container.register('ApproveAgentRunUseCase', {
         useFactory: (c) => c.resolve(ApproveAgentRunUseCase),
     });

package/dist/packages/core/src/infrastructure/persistence/sqlite/mappers/settings.mapper.d.ts

@@ -52,6 +52,13 @@ export interface SettingsRow {
     ci_max_fix_attempts: number | null;
     ci_watch_timeout_ms: number | null;
     ci_log_max_chars: number | null;
+    stage_timeout_analyze_ms: number | null;
+    stage_timeout_requirements_ms: number | null;
+    stage_timeout_research_ms: number | null;
+    stage_timeout_plan_ms: number | null;
+    stage_timeout_implement_ms: number | null;
+    stage_timeout_merge_ms: number | null;
+    analyze_repo_timeout_analyze_ms: number | null;
     onboarding_complete: number;
     approval_gate_allow_prd: number;
     approval_gate_allow_plan: number;

package/dist/packages/core/src/infrastructure/persistence/sqlite/mappers/settings.mapper.d.ts.map

@@ -1 +1 @@
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package/dist/packages/core/src/infrastructure/persistence/sqlite/mappers/settings.mapper.js

@@ -64,6 +64,15 @@ export function toDatabase(settings) {
         ci_max_fix_attempts: settings.workflow.ciMaxFixAttempts ?? null,
         ci_watch_timeout_ms: settings.workflow.ciWatchTimeoutMs ?? null,
         ci_log_max_chars: settings.workflow.ciLogMaxChars ?? null,
+        // WorkflowConfig per-stage timeouts (optional number → INTEGER | null)
+        stage_timeout_analyze_ms: settings.workflow.stageTimeouts?.analyzeMs ?? null,
+        stage_timeout_requirements_ms: settings.workflow.stageTimeouts?.requirementsMs ?? null,
+        stage_timeout_research_ms: settings.workflow.stageTimeouts?.researchMs ?? null,
+        stage_timeout_plan_ms: settings.workflow.stageTimeouts?.planMs ?? null,
+        stage_timeout_implement_ms: settings.workflow.stageTimeouts?.implementMs ?? null,
+        stage_timeout_merge_ms: settings.workflow.stageTimeouts?.mergeMs ?? null,
+        // WorkflowConfig analyze-repo timeouts (optional number → INTEGER | null)
+        analyze_repo_timeout_analyze_ms: settings.workflow.analyzeRepoTimeouts?.analyzeMs ?? null,
         // WorkflowConfig evidence settings (boolean → INTEGER)
         workflow_enable_evidence: settings.workflow.enableEvidence ? 1 : 0,
         workflow_commit_evidence: settings.workflow.commitEvidence ? 1 : 0,
@@ -83,6 +92,39 @@ export function toDatabase(settings) {
         feature_flag_debug: settings.featureFlags?.debug ? 1 : 0,
     };
 }
+/**
+ * Build the stageTimeouts spread from DB row columns.
+ * Returns `{ stageTimeouts: { ... } }` when at least one column is non-null,
+ * or an empty object `{}` when all are null (so the field stays undefined).
+ */
+function buildStageTimeoutsFromRow(row) {
+    const entries = [];
+    if (row.stage_timeout_analyze_ms !== null)
+        entries.push(['analyzeMs', row.stage_timeout_analyze_ms]);
+    if (row.stage_timeout_requirements_ms !== null)
+        entries.push(['requirementsMs', row.stage_timeout_requirements_ms]);
+    if (row.stage_timeout_research_ms !== null)
+        entries.push(['researchMs', row.stage_timeout_research_ms]);
+    if (row.stage_timeout_plan_ms !== null)
+        entries.push(['planMs', row.stage_timeout_plan_ms]);
+    if (row.stage_timeout_implement_ms !== null)
+        entries.push(['implementMs', row.stage_timeout_implement_ms]);
+    if (row.stage_timeout_merge_ms !== null)
+        entries.push(['mergeMs', row.stage_timeout_merge_ms]);
+    if (entries.length === 0)
+        return {};
+    return { stageTimeouts: Object.fromEntries(entries) };
+}
+/**
+ * Build the analyzeRepoTimeouts spread from DB row columns.
+ * Returns `{ analyzeRepoTimeouts: { ... } }` when the column is non-null,
+ * or an empty object `{}` when null (so the field stays undefined).
+ */
+function buildAnalyzeRepoTimeoutsFromRow(row) {
+    if (row.analyze_repo_timeout_analyze_ms === null)
+        return {};
+    return { analyzeRepoTimeouts: { analyzeMs: row.analyze_repo_timeout_analyze_ms } };
+}
 /**
  * Maps database row to Settings domain object.
  * Reconstructs nested objects and converts types from SQL.
@@ -153,6 +195,8 @@ export function fromDatabase(row) {
             ...(row.ci_max_fix_attempts !== null && { ciMaxFixAttempts: row.ci_max_fix_attempts }),
             ...(row.ci_watch_timeout_ms !== null && { ciWatchTimeoutMs: row.ci_watch_timeout_ms }),
             ...(row.ci_log_max_chars !== null && { ciLogMaxChars: row.ci_log_max_chars }),
+            ...buildStageTimeoutsFromRow(row),
+            ...buildAnalyzeRepoTimeoutsFromRow(row),
             enableEvidence: row.workflow_enable_evidence === 1,
             commitEvidence: row.workflow_commit_evidence === 1,
         },