@shepai/cli 1.116.1 → 1.116.3-pr363.85106c9

package/dist/packages/core/src/infrastructure/services/agents/feature-agent/nodes/node-helpers.d.ts

@@ -23,10 +23,20 @@ export type NodeLogger = ReturnType<typeof createNodeLogger>;
  * Safely read a file from the spec directory. Returns empty string if file doesn't exist.
  */
 export declare function readSpecFile(specDir: string, filename: string): string;
+/**
+ * Resolve the timeout for a specific stage.
+ * Reads per-stage timeout from settings (workflow.stageTimeouts.<stage>Ms),
+ * falling back to DEFAULT_STAGE_TIMEOUT_MS when not configured.
+ */
+export declare function getStageTimeoutMs(nodeName: string): number;
 /**
  * Build executor options with cwd. Each node gets a clean agent context.
+ * The timeout is resolved per-stage from settings (workflow.stageTimeouts)
+ * with a fallback to DEFAULT_STAGE_TIMEOUT_MS (10 min).
+ *
+ * When no `nodeName` is provided, the current node from state is used.
  */
-export declare function buildExecutorOptions(state: FeatureAgentState, overrides?: Partial<Pick<AgentExecutionOptions, 'timeout'>>): AgentExecutionOptions;
+export declare function buildExecutorOptions(state: FeatureAgentState, overrides?: Partial<Pick<AgentExecutionOptions, 'timeout'>>, nodeName?: string): AgentExecutionOptions;
 /**
  * Parse YAML with automatic sanitization of common AI-generated issues.
  * First attempts normal parsing; on failure, sanitizes unquoted braces

package/dist/packages/core/src/infrastructure/services/agents/feature-agent/nodes/node-helpers.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"node-helpers.d.ts","sourceRoot":"","sources":["../../../../../../../../../packages/core/src/infrastructure/services/agents/feature-agent/nodes/node-helpers.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EACV,cAAc,EACd,qBAAqB,EACrB,oBAAoB,EACrB,MAAM,+DAA+D,CAAC;AACvE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,8BAA8B,CAAC;AAElE,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AAUrD;;;;GAIG;AACH,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM;IAE7C,4DAA4D;gBAChD,IAAI;kBAGF,MAAM,GAAG,IAAI;mBAIZ,MAAM,GAAG,IAAI;EAK/B;AAED,MAAM,MAAM,UAAU,GAAG,UAAU,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAE7D;;GAEG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAMtE;AAoBD;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAO1D;AAED;;;;;;GAMG;AACH,wBAAgB,oBAAoB,CAClC,KAAK,EAAE,iBAAiB,EACxB,SAAS,CAAC,EAAE,OAAO,CAAC,IAAI,CAAC,qBAAqB,EAAE,SAAS,CAAC,CAAC,EAC3D,QAAQ,CAAC,EAAE,MAAM,GAChB,qBAAqB,CAUvB;AAeD;;;;GAIG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAQrD;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,GAAG,SAAS,GAAG,OAAO,CAQ3F;AAMD,MAAM,MAAM,aAAa,GAAG,eAAe,GAAG,mBAAmB,GAAG,eAAe,GAAG,SAAS,CAAC;AAMhG;;;;;;;GAOG;AACH,wBAAgB,aAAa,CAAC,YAAY,EAAE,MAAM,GAAG,aAAa,CAKjE;AAED,MAAM,WAAW,YAAY;IAC3B,wDAAwD;IACxD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,kFAAkF;IAClF,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0CAA0C;IAC1C,MAAM,CAAC,EAAE,UAAU,CAAC;CACrB;AAED;;;;;;GAMG;AACH,wBAAsB,YAAY,CAChC,QAAQ,EAAE,cAAc,EACxB,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,qBAAqB,EAC9B,SAAS,CAAC,EAAE,YAAY,GACvB,OAAO,CAAC,oBAAoB,CAAC,CA6B/B;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAW5D;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,UAAU,GAAG,IAAI,CAqB5F;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,OAAO,GAAG,KAAK,IAAI;IAAE,QAAQ,EAAE,IAAI,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAOhG;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,UAAU,GAAG,IAAI,CAwB1F;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,IAAI,CAa5F;AAED;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAAC,IAAI,EAAE;IACzC,IAAI,EAAE,OAAO,CAAC;IACd,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,6FAA6F;IAC7F,gBAAgB,CAAC,EAAE,OAAO,CAAC;CAC5B,GAAG,MAAM,CAiCT;AAED;;;;;GAKG;AACH,wBAAgB,kBAAkB,CAAC,YAAY,EAAE,MAAM,GAAG,SAAS,GAAG,MAAM,CAa3E;AAED;;;;;;;GAOG;AACH,wBAAgB,WAAW,CACzB,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,cAAc,EACxB,WAAW,EAAE,CAAC,KAAK,EAAE,iBAAiB,EAAE,GAAG,EAAE,UAAU,KAAK,MAAM,GACjE,CAAC,KAAK,EAAE,iBAAiB,KAAK,OAAO,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAqHnE"}

package/dist/packages/core/src/infrastructure/services/agents/feature-agent/nodes/node-helpers.js

@@ -8,6 +8,7 @@ import yaml from 'js-yaml';
 import { readFileSync, writeFileSync, renameSync, unlinkSync } from 'node:fs';
 import { join } from 'node:path';
 import { interrupt, isGraphBubbleUp } from '@langchain/langgraph';
+import { hasSettings, getSettings } from '../../../../services/settings.service.js';
 import { reportNodeStart } from '../heartbeat.js';
 import { recordPhaseStart, recordPhaseEnd, recordApprovalWaitStart, } from '../phase-timing-context.js';
 import { updateNodeLifecycle } from '../lifecycle-context.js';
@@ -44,14 +45,52 @@ export function readSpecFile(specDir, filename) {
         return '';
     }
 }
+/** Default timeout per agent call (30 minutes) — prevents infinite hangs. */
+const DEFAULT_STAGE_TIMEOUT_MS = 1_800_000;
+/**
+ * Map from node name to the corresponding StageTimeouts field.
+ * `fast-implement` reuses the implement timeout; `evidence` also reuses implement.
+ */
+const STAGE_TIMEOUT_KEY = {
+    analyze: 'analyzeMs',
+    requirements: 'requirementsMs',
+    research: 'researchMs',
+    plan: 'planMs',
+    implement: 'implementMs',
+    'fast-implement': 'implementMs',
+    evidence: 'implementMs',
+    merge: 'mergeMs',
+};
+/**
+ * Resolve the timeout for a specific stage.
+ * Reads per-stage timeout from settings (workflow.stageTimeouts.<stage>Ms),
+ * falling back to DEFAULT_STAGE_TIMEOUT_MS when not configured.
+ */
+export function getStageTimeoutMs(nodeName) {
+    if (!hasSettings())
+        return DEFAULT_STAGE_TIMEOUT_MS;
+    const timeouts = getSettings().workflow?.stageTimeouts;
+    if (!timeouts)
+        return DEFAULT_STAGE_TIMEOUT_MS;
+    const key = STAGE_TIMEOUT_KEY[nodeName];
+    if (!key)
+        return DEFAULT_STAGE_TIMEOUT_MS;
+    return timeouts[key] ?? DEFAULT_STAGE_TIMEOUT_MS;
+}
 /**
  * Build executor options with cwd. Each node gets a clean agent context.
+ * The timeout is resolved per-stage from settings (workflow.stageTimeouts)
+ * with a fallback to DEFAULT_STAGE_TIMEOUT_MS (10 min).
+ *
+ * When no `nodeName` is provided, the current node from state is used.
  */
-export function buildExecutorOptions(state, overrides) {
+export function buildExecutorOptions(state, overrides, nodeName) {
+    const stage = nodeName ?? state.currentNode ?? '';
+    const stageTimeout = getStageTimeoutMs(stage);
     return {
         cwd: state.worktreePath || state.repositoryPath,
         maxTurns: 5000,
-        timeout: 1_800_000, // 30 minutes per agent call — prevents infinite hangs
+        timeout: stageTimeout,
         ...(state.model ? { model: state.model } : {}),
         ...overrides,
     };
@@ -373,7 +412,7 @@ export function executeNode(nodeName, executor, buildPrompt) {
         try {
             const resumePrefix = buildResumeContext(state.resumeReason);
             const prompt = resumePrefix + buildPrompt(state, log);
-            const options = buildExecutorOptions(state);
+            const options = buildExecutorOptions(state, undefined, nodeName);
             log.info(`Executing agent at cwd=${options.cwd}`);
             log.info(`Prompt length: ${prompt.length} chars`);
             const result = await executor.execute(prompt, options);

package/dist/packages/core/src/infrastructure/services/git/worktree.service.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"worktree.service.d.ts","sourceRoot":"","sources":["../../../../../../../packages/core/src/infrastructure/services/git/worktree.service.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AASH,OAAO,KAAK,EACV,gBAAgB,EAChB,YAAY,EACb,MAAM,0EAA0E,CAAC;AAQlF;;;GAGG;AACH,MAAM,MAAM,YAAY,GAAG,CACzB,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,MAAM,EAAE,EACd,OAAO,CAAC,EAAE,MAAM,KACb,OAAO,CAAC;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC,CAAC;AAEjD,qBACa,eAAgB,YAAW,gBAAgB;IAClB,OAAO,CAAC,QAAQ,CAAC,QAAQ;gBAAR,QAAQ,EAAE,YAAY;IAErE,MAAM,CACV,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,MAAM,EACd,YAAY,EAAE,MAAM,EACpB,UAAU,CAAC,EAAE,MAAM,GAClB,OAAO,CAAC,YAAY,CAAC;IAuBlB,MAAM,CAAC,QAAQ,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;IAW9E,KAAK,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAQtC,IAAI,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAO/C,MAAM,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAK1D,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAWhE,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAWtE,mBAAmB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAqC1D,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM;IAQzD,OAAO,CAAC,mBAAmB;IA2B3B,OAAO,CAAC,aAAa;IAgCrB,OAAO,CAAC,kBAAkB;IAI1B,OAAO,CAAC,qBAAqB;CAsB9B"}
+{"version":3,"file":"worktree.service.d.ts","sourceRoot":"","sources":["../../../../../../../packages/core/src/infrastructure/services/git/worktree.service.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AASH,OAAO,KAAK,EACV,gBAAgB,EAChB,YAAY,EACb,MAAM,0EAA0E,CAAC;AAQlF;;;GAGG;AACH,MAAM,MAAM,YAAY,GAAG,CACzB,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,MAAM,EAAE,EACd,OAAO,CAAC,EAAE,MAAM,KACb,OAAO,CAAC;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC,CAAC;AAEjD,qBACa,eAAgB,YAAW,gBAAgB;IAClB,OAAO,CAAC,QAAQ,CAAC,QAAQ;gBAAR,QAAQ,EAAE,YAAY;IAErE,MAAM,CACV,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,MAAM,EACd,YAAY,EAAE,MAAM,EACpB,UAAU,CAAC,EAAE,MAAM,GAClB,OAAO,CAAC,YAAY,CAAC;IAuBlB,MAAM,CAAC,QAAQ,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;IAW9E,KAAK,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAQtC,IAAI,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAO/C,MAAM,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAK1D,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAWhE,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAWtE,mBAAmB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAwC1D,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM;IAQzD,OAAO,CAAC,mBAAmB;IA2B3B,OAAO,CAAC,aAAa;IAgCrB,OAAO,CAAC,kBAAkB;IAI1B,OAAO,CAAC,qBAAqB;CAsB9B"}

package/dist/packages/core/src/infrastructure/services/git/worktree.service.js

@@ -129,6 +129,9 @@ let WorktreeService = class WorktreeService {
             }
             await this.execFile('git', ['config', 'user.name', GIT_AUTO_INIT_USER], { cwd: repoPath });
             await this.execFile('git', ['config', 'user.email', GIT_AUTO_INIT_EMAIL], { cwd: repoPath });
+            // Stage any existing files so they appear in the worktree after creation.
+            // --allow-empty ensures the commit succeeds even if the directory is empty.
+            await this.execFile('git', ['add', '.'], { cwd: repoPath });
             await this.execFile('git', ['commit', '--allow-empty', '--no-gpg-sign', '-m', 'Initial commit'], { cwd: repoPath });
         }
         catch (error) {

package/dist/src/presentation/web/app/actions/open-shell.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"open-shell.d.ts","sourceRoot":"","sources":["../../../../../../src/presentation/web/app/actions/open-shell.ts"],"names":[],"mappings":"AAmBA,UAAU,cAAc;IACtB,cAAc,EAAE,MAAM,CAAC;IACvB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,wBAAsB,SAAS,CAC7B,KAAK,EAAE,cAAc,GACpB,OAAO,CAAC;IAAE,OAAO,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAoC9E"}
+{"version":3,"file":"open-shell.d.ts","sourceRoot":"","sources":["../../../../../../src/presentation/web/app/actions/open-shell.ts"],"names":[],"mappings":"AAsBA,UAAU,cAAc;IACtB,cAAc,EAAE,MAAM,CAAC;IACvB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,wBAAsB,SAAS,CAC7B,KAAK,EAAE,cAAc,GACpB,OAAO,CAAC;IAAE,OAAO,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAoC9E"}

package/dist/src/presentation/web/app/actions/open-shell.js

@@ -12,7 +12,10 @@ import { computeWorktreePath } from '../../../../../packages/core/src/infrastruc
 const SHELL_COMMANDS = {
     darwin: { cmd: 'open', args: (p) => ['-a', 'Terminal', p] },
     linux: { cmd: 'x-terminal-emulator', args: (p) => [`--working-directory=${p}`] },
-    win32: { cmd: 'powershell', args: (p) => ['-NoExit', '-Command', `Set-Location "${p}"`] },
+    win32: {
+        cmd: 'cmd.exe',
+        args: (p) => ['/c', 'start', 'powershell', '-NoExit', '-Command', `Set-Location "${p}"`],
+    },
 };
 export async function openShell(input) {
     const { repositoryPath, branch } = input;

package/dist/src/presentation/web/components/features/settings/settings-page-client.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"settings-page-client.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.tsx"],"names":[],"mappings":"AAqCA,OAAO,KAAK,EACV,QAAQ,EAGT,MAAM,sCAAsC,CAAC;AAyB9C,MAAM,WAAW,uBAAuB;IACtC,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;CACpB;AA6QD,wBAAgB,kBAAkB,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,EAAE,uBAAuB,2CAi1B7F"}
+{"version":3,"file":"settings-page-client.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.tsx"],"names":[],"mappings":"AAuCA,OAAO,KAAK,EACV,QAAQ,EAGT,MAAM,sCAAsC,CAAC;AA0B9C,MAAM,WAAW,uBAAuB;IACtC,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;CACpB;AA6QD,wBAAgB,kBAAkB,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,EAAE,uBAAuB,2CA4iC7F"}

package/dist/src/presentation/web/components/features/settings/settings-page-client.js

@@ -1,7 +1,7 @@
 'use client';
 import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 import { useState, useTransition, useRef, useEffect, useCallback } from 'react';
-import { Eye, EyeOff, Check, Bot, Terminal, GitBranch, Activity, Bell, Flag, Database, Minus, Plus, ExternalLink, Settings2, } from 'lucide-react';
+import { Eye, EyeOff, Check, Bot, Terminal, GitBranch, Activity, Bell, Flag, Database, Minus, Plus, ExternalLink, Settings2, Timer, } from 'lucide-react';
 import { toast } from 'sonner';
 import { cn } from '../../../lib/utils.js';
 import { Label } from '../../ui/label.js';
@@ -14,6 +14,7 @@ import { updateSettingsAction } from '../../../app/actions/update-settings.js';
 import { AgentAuthMethod, EditorType } from '../../../../../../packages/core/src/domain/generated/output.js';
 import { getEditorTypeIcon } from '../../common/editor-type-icons.js';
 import { AgentModelPicker } from '../../features/settings/AgentModelPicker/index.js';
+import { TimeoutSlider } from '../../features/settings/timeout-slider.js';
 const AUTH_METHOD_OPTIONS = [
     { value: AgentAuthMethod.Session, label: 'Session' },
     { value: AgentAuthMethod.Token, label: 'Token' },
@@ -30,6 +31,7 @@ const SECTIONS = [
     { id: 'environment', label: 'Environment', icon: Terminal },
     { id: 'workflow', label: 'Workflow', icon: GitBranch },
     { id: 'ci', label: 'CI', icon: Activity },
+    { id: 'stage-timeouts', label: 'Timeouts', icon: Timer },
     { id: 'notifications', label: 'Notifications', icon: Bell },
     { id: 'feature-flags', label: 'Flags', icon: Flag },
     { id: 'database', label: 'Database', icon: Database },
@@ -137,6 +139,18 @@ export function SettingsPageClient({ settings, shepHome, dbFileSize }) {
         ? String(Math.round(settings.workflow.ciWatchTimeoutMs / 1000))
         : '');
     const [ciLogMax, setCiLogMax] = useState(settings.workflow.ciLogMaxChars != null ? String(settings.workflow.ciLogMaxChars) : '');
+    // Feature agent per-stage timeout states (stored in seconds for display, converted to ms on save)
+    // Defaults: feature agent stages = 1_800_000 ms (1800s), analyze-repo = 600_000 ms (600s)
+    const stageTimeoutsConfig = settings.workflow.stageTimeouts;
+    const [analyzeTimeout, setAnalyzeTimeout] = useState(String(Math.round((stageTimeoutsConfig?.analyzeMs ?? 1_800_000) / 1000)));
+    const [requirementsTimeout, setRequirementsTimeout] = useState(String(Math.round((stageTimeoutsConfig?.requirementsMs ?? 1_800_000) / 1000)));
+    const [researchTimeout, setResearchTimeout] = useState(String(Math.round((stageTimeoutsConfig?.researchMs ?? 1_800_000) / 1000)));
+    const [planTimeout, setPlanTimeout] = useState(String(Math.round((stageTimeoutsConfig?.planMs ?? 1_800_000) / 1000)));
+    const [implementTimeout, setImplementTimeout] = useState(String(Math.round((stageTimeoutsConfig?.implementMs ?? 1_800_000) / 1000)));
+    const [mergeTimeout, setMergeTimeout] = useState(String(Math.round((stageTimeoutsConfig?.mergeMs ?? 1_800_000) / 1000)));
+    // Analyze-repo agent timeout state
+    const analyzeRepoConfig = settings.workflow.analyzeRepoTimeouts;
+    const [analyzeRepoTimeout, setAnalyzeRepoTimeout] = useState(String(Math.round((analyzeRepoConfig?.analyzeMs ?? 600_000) / 1000)));
     // Notification state
     const [inApp, setInApp] = useState(settings.notifications.inApp.enabled);
     const [browser, setBrowser] = useState(settings.notifications.browser.enabled);
@@ -150,6 +164,27 @@ export function SettingsPageClient({ settings, shepHome, dbFileSize }) {
         ? String(Math.round(settings.workflow.ciWatchTimeoutMs / 1000))
         : '';
     const originalCiLogMax = settings.workflow.ciLogMaxChars != null ? String(settings.workflow.ciLogMaxChars) : '';
+    const originalAnalyzeTimeout = stageTimeoutsConfig?.analyzeMs != null
+        ? String(Math.round(stageTimeoutsConfig.analyzeMs / 1000))
+        : '';
+    const originalRequirementsTimeout = stageTimeoutsConfig?.requirementsMs != null
+        ? String(Math.round(stageTimeoutsConfig.requirementsMs / 1000))
+        : '';
+    const originalResearchTimeout = stageTimeoutsConfig?.researchMs != null
+        ? String(Math.round(stageTimeoutsConfig.researchMs / 1000))
+        : '';
+    const originalPlanTimeout = stageTimeoutsConfig?.planMs != null
+        ? String(Math.round(stageTimeoutsConfig.planMs / 1000))
+        : '';
+    const originalImplementTimeout = stageTimeoutsConfig?.implementMs != null
+        ? String(Math.round(stageTimeoutsConfig.implementMs / 1000))
+        : '';
+    const originalMergeTimeout = stageTimeoutsConfig?.mergeMs != null
+        ? String(Math.round(stageTimeoutsConfig.mergeMs / 1000))
+        : '';
+    const originalAnalyzeRepoTimeout = analyzeRepoConfig?.analyzeMs != null
+        ? String(Math.round(analyzeRepoConfig.analyzeMs / 1000))
+        : '';
     function parseOptionalInt(value) {
         if (value === '')
             return undefined;
@@ -165,6 +200,12 @@ export function SettingsPageClient({ settings, shepHome, dbFileSize }) {
         }
         return { agent: result };
     }
+    function secondsToMs(val) {
+        if (val === undefined)
+            return undefined;
+        const n = parseOptionalInt(val);
+        return n != null ? n * 1000 : undefined;
+    }
     // Workflow helpers
     function buildWorkflowPayload(overrides = {}) {
         const timeoutSeconds = parseOptionalInt(overrides.ciTimeout ?? ciTimeout);
@@ -182,6 +223,17 @@ export function SettingsPageClient({ settings, shepHome, dbFileSize }) {
                 ciMaxFixAttempts: parseOptionalInt(overrides.ciMaxFix ?? ciMaxFix),
                 ciWatchTimeoutMs: timeoutSeconds != null ? timeoutSeconds * 1000 : undefined,
                 ciLogMaxChars: parseOptionalInt(overrides.ciLogMax ?? ciLogMax),
+                stageTimeouts: {
+                    analyzeMs: secondsToMs(overrides.analyzeTimeout ?? analyzeTimeout),
+                    requirementsMs: secondsToMs(overrides.requirementsTimeout ?? requirementsTimeout),
+                    researchMs: secondsToMs(overrides.researchTimeout ?? researchTimeout),
+                    planMs: secondsToMs(overrides.planTimeout ?? planTimeout),
+                    implementMs: secondsToMs(overrides.implementTimeout ?? implementTimeout),
+                    mergeMs: secondsToMs(overrides.mergeTimeout ?? mergeTimeout),
+                },
+                analyzeRepoTimeouts: {
+                    analyzeMs: secondsToMs(overrides.analyzeRepoTimeout ?? analyzeRepoTimeout),
+                },
             },
         };
     }
@@ -320,7 +372,28 @@ export function SettingsPageClient({ settings, shepHome, dbFileSize }) {
                                         label: 'CI security gates',
                                         href: 'https://github.com/shep-ai/cli/blob/main/specs/003-cicd-security-gates/spec.md',
                                     },
-                                ], children: "When a feature completes, the agent can watch CI and auto-fix failures. These limits prevent runaway retries and control how much log output is sent to the agent for analysis." })] }), _jsxs("div", { id: "section-notifications", className: "grid scroll-mt-18 grid-cols-1 gap-x-5 rounded-lg lg:grid-cols-[1fr_280px]", children: [_jsxs(SettingsSection, { icon: Bell, title: "Notifications", description: "How and when you get notified", testId: "notification-settings-section", children: [_jsx(SubsectionLabel, { children: "Channels" }), _jsx(SwitchRow, { label: "In-app", description: "Notifications inside the Shep UI", id: "notif-in-app", testId: "switch-in-app", checked: inApp, onChange: (v) => {
+                                ], children: "When a feature completes, the agent can watch CI and auto-fix failures. These limits prevent runaway retries and control how much log output is sent to the agent for analysis." })] }), _jsxs("div", { id: "section-stage-timeouts", className: "grid scroll-mt-18 grid-cols-1 gap-x-5 rounded-lg lg:grid-cols-[1fr_280px]", children: [_jsxs(SettingsSection, { icon: Timer, title: "Stage Timeouts", description: "Maximum execution time per agent stage", testId: "stage-timeouts-settings-section", children: [_jsx(SubsectionLabel, { children: "Feature Agent" }), _jsx(SettingsRow, { label: "Analyze", description: "Repository analysis timeout", htmlFor: "timeout-analyze", children: _jsx(TimeoutSlider, { id: "timeout-analyze", testId: "timeout-analyze-input", value: analyzeTimeout, onChange: setAnalyzeTimeout, onBlur: () => {
+                                                if (analyzeTimeout !== originalAnalyzeTimeout)
+                                                    save(buildWorkflowPayload({ analyzeTimeout }));
+                                            }, defaultSeconds: 1800 }) }), _jsx(SettingsRow, { label: "Requirements", description: "Requirements gathering timeout", htmlFor: "timeout-requirements", children: _jsx(TimeoutSlider, { id: "timeout-requirements", testId: "timeout-requirements-input", value: requirementsTimeout, onChange: setRequirementsTimeout, onBlur: () => {
+                                                if (requirementsTimeout !== originalRequirementsTimeout)
+                                                    save(buildWorkflowPayload({ requirementsTimeout }));
+                                            }, defaultSeconds: 1800 }) }), _jsx(SettingsRow, { label: "Research", description: "Technical research timeout", htmlFor: "timeout-research", children: _jsx(TimeoutSlider, { id: "timeout-research", testId: "timeout-research-input", value: researchTimeout, onChange: setResearchTimeout, onBlur: () => {
+                                                if (researchTimeout !== originalResearchTimeout)
+                                                    save(buildWorkflowPayload({ researchTimeout }));
+                                            }, defaultSeconds: 1800 }) }), _jsx(SettingsRow, { label: "Plan", description: "Implementation planning timeout", htmlFor: "timeout-plan", children: _jsx(TimeoutSlider, { id: "timeout-plan", testId: "timeout-plan-input", value: planTimeout, onChange: setPlanTimeout, onBlur: () => {
+                                                if (planTimeout !== originalPlanTimeout)
+                                                    save(buildWorkflowPayload({ planTimeout }));
+                                            }, defaultSeconds: 1800 }) }), _jsx(SettingsRow, { label: "Implement", description: "Code implementation timeout", htmlFor: "timeout-implement", children: _jsx(TimeoutSlider, { id: "timeout-implement", testId: "timeout-implement-input", value: implementTimeout, onChange: setImplementTimeout, onBlur: () => {
+                                                if (implementTimeout !== originalImplementTimeout)
+                                                    save(buildWorkflowPayload({ implementTimeout }));
+                                            }, defaultSeconds: 1800 }) }), _jsx(SettingsRow, { label: "Merge", description: "PR creation and merge timeout", htmlFor: "timeout-merge", children: _jsx(TimeoutSlider, { id: "timeout-merge", testId: "timeout-merge-input", value: mergeTimeout, onChange: setMergeTimeout, onBlur: () => {
+                                                if (mergeTimeout !== originalMergeTimeout)
+                                                    save(buildWorkflowPayload({ mergeTimeout }));
+                                            }, defaultSeconds: 1800 }) }), _jsx(SubsectionLabel, { children: "Analyze Repository Agent" }), _jsx(SettingsRow, { label: "Analyze", description: "Repository analysis timeout", htmlFor: "timeout-analyze-repo", children: _jsx(TimeoutSlider, { id: "timeout-analyze-repo", testId: "timeout-analyze-repo-input", value: analyzeRepoTimeout, onChange: setAnalyzeRepoTimeout, onBlur: () => {
+                                                if (analyzeRepoTimeout !== originalAnalyzeRepoTimeout)
+                                                    save(buildWorkflowPayload({ analyzeRepoTimeout }));
+                                            }, defaultSeconds: 600 }) })] }), _jsx(SectionHint, { children: "Each agent has independently configurable stage timeouts. When a stage exceeds its timeout, the agent is terminated. Longer timeouts are useful for complex implementations. Feature agent defaults to 30 minutes per stage. Analyze repository agent defaults to 10 minutes." })] }), _jsxs("div", { id: "section-notifications", className: "grid scroll-mt-18 grid-cols-1 gap-x-5 rounded-lg lg:grid-cols-[1fr_280px]", children: [_jsxs(SettingsSection, { icon: Bell, title: "Notifications", description: "How and when you get notified", testId: "notification-settings-section", children: [_jsx(SubsectionLabel, { children: "Channels" }), _jsx(SwitchRow, { label: "In-app", description: "Notifications inside the Shep UI", id: "notif-in-app", testId: "switch-in-app", checked: inApp, onChange: (v) => {
                                             setInApp(v);
                                             save(buildNotificationPayload({ inApp: v }));
                                         } }), _jsx(SwitchRow, { label: "Browser", description: "Push notifications via the browser", id: "notif-browser", testId: "switch-browser", checked: browser, onChange: (v) => {

package/dist/src/presentation/web/components/features/settings/settings-page-client.stories.d.ts

@@ -13,4 +13,5 @@ type Story = StoryObj<typeof meta>;
 export declare const Default: Story;
 export declare const AllSections: Story;
 export declare const EvidenceEnabled: Story;
+export declare const CustomTimeouts: Story;
 //# sourceMappingURL=settings-page-client.stories.d.ts.map

package/dist/src/presentation/web/components/features/settings/settings-page-client.stories.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"settings-page-client.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAM5D,QAAA,MAAM,IAAI;;;;;;;CAOiC,CAAC;AAE5C,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAMrB,CAAC;AAEF,eAAO,MAAM,WAAW,EAAE,KAkBzB,CAAC;AAEF,eAAO,MAAM,eAAe,EAAE,KAa7B,CAAC"}
+{"version":3,"file":"settings-page-client.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/settings-page-client.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAM5D,QAAA,MAAM,IAAI;;;;;;;CAOiC,CAAC;AAE5C,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAMrB,CAAC;AAEF,eAAO,MAAM,WAAW,EAAE,KAkBzB,CAAC;AAEF,eAAO,MAAM,eAAe,EAAE,KAa7B,CAAC;AAEF,eAAO,MAAM,cAAc,EAAE,KAsB5B,CAAC"}

package/dist/src/presentation/web/components/features/settings/settings-page-client.stories.js

@@ -51,3 +51,26 @@ export const EvidenceEnabled = {
         dbFileSize: '2.4 MB',
     },
 };
+export const CustomTimeouts = {
+    args: {
+        settings: {
+            ...defaultSettings,
+            workflow: {
+                ...defaultSettings.workflow,
+                stageTimeouts: {
+                    analyzeMs: 300000,
+                    requirementsMs: 600000,
+                    researchMs: 900000,
+                    planMs: 600000,
+                    implementMs: 1800000,
+                    mergeMs: 600000,
+                },
+                analyzeRepoTimeouts: {
+                    analyzeMs: 300000,
+                },
+            },
+        },
+        shepHome: '/home/user/.shep',
+        dbFileSize: '2.4 MB',
+    },
+};

package/dist/src/presentation/web/components/features/settings/timeout-slider.d.ts

@@ -0,0 +1,11 @@
+export interface TimeoutSliderProps {
+    id: string;
+    testId: string;
+    /** Current value in seconds (as a string for form compatibility) */
+    value: string;
+    onChange: (value: string) => void;
+    onBlur: () => void;
+    defaultSeconds?: number;
+}
+export declare function TimeoutSlider({ id, testId, value, onChange, onBlur, defaultSeconds, }: TimeoutSliderProps): import("react/jsx-runtime").JSX.Element;
+//# sourceMappingURL=timeout-slider.d.ts.map

package/dist/src/presentation/web/components/features/settings/timeout-slider.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"timeout-slider.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/timeout-slider.tsx"],"names":[],"mappings":"AAwCA,MAAM,WAAW,kBAAkB;IACjC,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,MAAM,CAAC;IACf,oEAAoE;IACpE,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI,CAAC;IAClC,MAAM,EAAE,MAAM,IAAI,CAAC;IACnB,cAAc,CAAC,EAAE,MAAM,CAAC;CACzB;AAWD,wBAAgB,aAAa,CAAC,EAC5B,EAAE,EACF,MAAM,EACN,KAAK,EACL,QAAQ,EACR,MAAM,EACN,cAAqB,GACtB,EAAE,kBAAkB,2CAyCpB"}

package/dist/src/presentation/web/components/features/settings/timeout-slider.js

@@ -0,0 +1,63 @@
+'use client';
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { useState, useCallback } from 'react';
+import { Slider } from '../../ui/slider.js';
+/** Fixed duration presets in seconds — slider snaps to these values */
+const PRESETS = [
+    60, // 1m
+    120, // 2m
+    300, // 5m
+    600, // 10m
+    900, // 15m
+    1800, // 30m
+    2700, // 45m
+    3600, // 1h
+    7200, // 2h
+    10800, // 3h
+    14400, // 4h
+    21600, // 6h
+    28800, // 8h
+    43200, // 12h
+    86400, // 24h
+];
+const SLIDER_MAX = PRESETS.length - 1;
+/** Find the closest preset index for a given seconds value */
+function secondsToIndex(seconds) {
+    let closest = 0;
+    let minDiff = Math.abs(seconds - PRESETS[0]);
+    for (let i = 1; i < PRESETS.length; i++) {
+        const diff = Math.abs(seconds - PRESETS[i]);
+        if (diff < minDiff) {
+            minDiff = diff;
+            closest = i;
+        }
+    }
+    return closest;
+}
+function formatDuration(totalSeconds) {
+    const hours = Math.floor(totalSeconds / 3600);
+    const minutes = Math.round((totalSeconds % 3600) / 60);
+    if (hours === 0)
+        return `${minutes}m`;
+    if (minutes === 0)
+        return `${hours}h`;
+    return `${hours}h ${minutes}m`;
+}
+export function TimeoutSlider({ id, testId, value, onChange, onBlur, defaultSeconds = 1800, }) {
+    const numValue = value === '' ? defaultSeconds : parseInt(value, 10);
+    const seconds = numValue || defaultSeconds;
+    // Local index state prevents snap-back during drag — updates immediately
+    // without waiting for the parent to re-render with the new value.
+    const [localIndex, setLocalIndex] = useState(() => secondsToIndex(seconds));
+    // Sync from props only when the resolved index actually differs
+    // (e.g. external reset or server push). Avoids overwriting during drag.
+    const propsIndex = secondsToIndex(seconds);
+    if (propsIndex !== localIndex && PRESETS[localIndex] !== seconds) {
+        setLocalIndex(propsIndex);
+    }
+    const handleChange = useCallback(([i]) => {
+        setLocalIndex(i);
+        onChange(String(PRESETS[i]));
+    }, [onChange]);
+    return (_jsxs("div", { className: "flex w-55 items-center gap-2", children: [_jsx(Slider, { id: id, "data-testid": testId, min: 0, max: SLIDER_MAX, step: 1, value: [localIndex], onValueChange: handleChange, onValueCommit: () => onBlur(), className: "min-w-0 flex-1" }), _jsx("span", { className: "text-muted-foreground shrink-0 text-right text-xs tabular-nums", children: formatDuration(PRESETS[localIndex]) })] }));
+}

package/dist/src/presentation/web/components/features/settings/timeout-slider.stories.d.ts

@@ -0,0 +1,10 @@
+import type { Meta, StoryObj } from '@storybook/react';
+import { TimeoutSlider } from './timeout-slider.js';
+declare const meta: Meta<typeof TimeoutSlider>;
+export default meta;
+type Story = StoryObj<typeof TimeoutSlider>;
+export declare const Default: Story;
+export declare const ShortTimeout: Story;
+export declare const LongTimeout: Story;
+export declare const AllStages: Story;
+//# sourceMappingURL=timeout-slider.stories.d.ts.map

package/dist/src/presentation/web/components/features/settings/timeout-slider.stories.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"timeout-slider.stories.d.ts","sourceRoot":"","sources":["../../../../../../../src/presentation/web/components/features/settings/timeout-slider.stories.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AAEjD,QAAA,MAAM,IAAI,EAAE,IAAI,CAAC,OAAO,aAAa,CAGpC,CAAC;AAEF,eAAe,IAAI,CAAC;AACpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,aAAa,CAAC,CAAC;AA6B5C,eAAO,MAAM,OAAO,EAAE,KAErB,CAAC;AAEF,eAAO,MAAM,YAAY,EAAE,KAE1B,CAAC;AAEF,eAAO,MAAM,WAAW,EAAE,KAEzB,CAAC;AAEF,eAAO,MAAM,SAAS,EAAE,KAWvB,CAAC"}

package/dist/src/presentation/web/components/features/settings/timeout-slider.stories.js

@@ -0,0 +1,24 @@
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { useState } from 'react';
+import { TimeoutSlider } from './timeout-slider.js';
+const meta = {
+    title: 'Features/Settings/TimeoutSlider',
+    component: TimeoutSlider,
+};
+export default meta;
+function TimeoutSliderDemo({ label = 'Analyze', defaultSeconds = 1800, }) {
+    const [value, setValue] = useState(String(defaultSeconds));
+    return (_jsx("div", { style: { maxWidth: 500 }, children: _jsxs("div", { style: { display: 'flex', alignItems: 'center', justifyContent: 'space-between', gap: 16 }, children: [_jsx("span", { style: { fontSize: 14 }, children: label }), _jsx(TimeoutSlider, { id: "demo-slider", testId: "demo-slider-input", value: value, onChange: setValue, onBlur: () => undefined, defaultSeconds: defaultSeconds })] }) }));
+}
+export const Default = {
+    render: () => _jsx(TimeoutSliderDemo, {}),
+};
+export const ShortTimeout = {
+    render: () => _jsx(TimeoutSliderDemo, { label: "Analyze Repo", defaultSeconds: 600 }),
+};
+export const LongTimeout = {
+    render: () => _jsx(TimeoutSliderDemo, { label: "Implement", defaultSeconds: 5400 }),
+};
+export const AllStages = {
+    render: () => (_jsxs("div", { style: { maxWidth: 500, display: 'flex', flexDirection: 'column', gap: 16 }, children: [_jsx(TimeoutSliderDemo, { label: "Analyze", defaultSeconds: 1800 }), _jsx(TimeoutSliderDemo, { label: "Requirements", defaultSeconds: 1800 }), _jsx(TimeoutSliderDemo, { label: "Research", defaultSeconds: 1800 }), _jsx(TimeoutSliderDemo, { label: "Plan", defaultSeconds: 1800 }), _jsx(TimeoutSliderDemo, { label: "Implement", defaultSeconds: 1800 }), _jsx(TimeoutSliderDemo, { label: "Merge", defaultSeconds: 1800 })] })),
+};

package/dist/src/presentation/web/components/features/settings/workflow-settings-section.d.ts.map

@@ -1 +1 @@
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