@seqyuan/annovibe 0.8.20 → 0.8.22

package/.next/types/routes.d.ts

@@ -2,7 +2,7 @@
 // Do not edit this file manually
 
 type AppRoutes = "/" | "/login"
-type AppRouteHandlerRoutes = "/api/agent/[id]" | "/api/agent/[id]/events" | "/api/agent/new" | "/api/auth/all-providers" | "/api/auth/api-key/[provider]" | "/api/auth/login" | "/api/auth/login/[provider]" | "/api/auth/logout/[provider]" | "/api/auth/providers" | "/api/auth/status" | "/api/default-cwd" | "/api/files/[...path]" | "/api/harness" | "/api/home" | "/api/internal/runtime" | "/api/models" | "/api/models-config" | "/api/models-config/discover" | "/api/models-config/test" | "/api/plot-kernels" | "/api/plot-kernels/status" | "/api/plot-kernels/stop" | "/api/projects" | "/api/projects/browse" | "/api/reports/[id]" | "/api/search" | "/api/sessions" | "/api/sessions/[id]" | "/api/sessions/[id]/context" | "/api/sessions/new" | "/api/settings" | "/api/skills" | "/api/skills/install" | "/api/skills/search" | "/api/soul" | "/api/version"
+type AppRouteHandlerRoutes = "/api/agent/[id]" | "/api/agent/[id]/events" | "/api/agent/new" | "/api/apps" | "/api/apps/[id]/[[...path]]" | "/api/auth/all-providers" | "/api/auth/api-key/[provider]" | "/api/auth/login" | "/api/auth/login/[provider]" | "/api/auth/logout/[provider]" | "/api/auth/providers" | "/api/auth/status" | "/api/default-cwd" | "/api/files/[...path]" | "/api/harness" | "/api/home" | "/api/internal/runtime" | "/api/models" | "/api/models-config" | "/api/models-config/discover" | "/api/models-config/test" | "/api/plot-kernels" | "/api/plot-kernels/status" | "/api/plot-kernels/stop" | "/api/projects" | "/api/projects/browse" | "/api/reports/[id]" | "/api/search" | "/api/sessions" | "/api/sessions/[id]" | "/api/sessions/[id]/context" | "/api/sessions/new" | "/api/settings" | "/api/skills" | "/api/skills/install" | "/api/skills/search" | "/api/soul" | "/api/subagents/status" | "/api/version" | "/favicon.ico"
 type PageRoutes = never
 type LayoutRoutes = "/"
 type RedirectRoutes = never
@@ -15,6 +15,8 @@ interface ParamMap {
   "/api/agent/[id]": { "id": string; }
   "/api/agent/[id]/events": { "id": string; }
   "/api/agent/new": {}
+  "/api/apps": {}
+  "/api/apps/[id]/[[...path]]": { "id": string; "path"?: string[]; }
   "/api/auth/all-providers": {}
   "/api/auth/api-key/[provider]": { "provider": string; }
   "/api/auth/login": {}
@@ -47,7 +49,9 @@ interface ParamMap {
   "/api/skills/install": {}
   "/api/skills/search": {}
   "/api/soul": {}
+  "/api/subagents/status": {}
   "/api/version": {}
+  "/favicon.ico": {}
   "/login": {}
 }
 

package/.next/types/validator.ts

@@ -92,6 +92,24 @@ type RouteHandlerConfig<Route extends AppRouteHandlerRoutes = AppRouteHandlerRou
   type __Unused = __Check
 }
 
+// Validate ../../app/api/apps/[id]/[[...path]]/route.ts
+{
+  type __IsExpected<Specific extends RouteHandlerConfig<"/api/apps/[id]/[[...path]]">> = Specific
+  const handler = {} as typeof import("../../app/api/apps/[id]/[[...path]]/route.js")
+  type __Check = __IsExpected<typeof handler>
+  // @ts-ignore
+  type __Unused = __Check
+}
+
+// Validate ../../app/api/apps/route.ts
+{
+  type __IsExpected<Specific extends RouteHandlerConfig<"/api/apps">> = Specific
+  const handler = {} as typeof import("../../app/api/apps/route.js")
+  type __Check = __IsExpected<typeof handler>
+  // @ts-ignore
+  type __Unused = __Check
+}
+
 // Validate ../../app/api/auth/all-providers/route.ts
 {
   type __IsExpected<Specific extends RouteHandlerConfig<"/api/auth/all-providers">> = Specific
@@ -380,6 +398,15 @@ type RouteHandlerConfig<Route extends AppRouteHandlerRoutes = AppRouteHandlerRou
   type __Unused = __Check
 }
 
+// Validate ../../app/api/subagents/status/route.ts
+{
+  type __IsExpected<Specific extends RouteHandlerConfig<"/api/subagents/status">> = Specific
+  const handler = {} as typeof import("../../app/api/subagents/status/route.js")
+  type __Check = __IsExpected<typeof handler>
+  // @ts-ignore
+  type __Unused = __Check
+}
+
 // Validate ../../app/api/version/route.ts
 {
   type __IsExpected<Specific extends RouteHandlerConfig<"/api/version">> = Specific
@@ -389,6 +416,15 @@ type RouteHandlerConfig<Route extends AppRouteHandlerRoutes = AppRouteHandlerRou
   type __Unused = __Check
 }
 
+// Validate ../../app/favicon.ico/route.ts
+{
+  type __IsExpected<Specific extends RouteHandlerConfig<"/favicon.ico">> = Specific
+  const handler = {} as typeof import("../../app/favicon.ico/route.js")
+  type __Check = __IsExpected<typeof handler>
+  // @ts-ignore
+  type __Unused = __Check
+}
+
 
 
 

package/bin/pi-web.js

@@ -350,6 +350,14 @@ function getProcessSummary(pid) {
   };
 }
 
+function logSkippedProcess(info, listenPort = null) {
+  const label = info.cmdline || "unknown command";
+  const portText = listenPort ? `port ${listenPort} is used by ` : "";
+  console.error(`annovibe stop: ${portText}pid ${info.pid}, but it does not look like annovibe; not stopping it.`);
+  console.error(`command: ${label}`);
+  if (info.cwd) console.error(`cwd: ${info.cwd}`);
+}
+
 function looksLikeAnnoVibeProcess(info) {
   const cmdline = info.cmdline || "";
   const cwd = info.cwd || "";
@@ -390,10 +398,7 @@ async function stopVerifiedPortListeners(listenPort, quiet = false) {
 
   if (skipped.length > 0) {
     for (const info of skipped) {
-      const label = info.cmdline || "unknown command";
-      console.error(`annovibe stop: port ${listenPort} is used by pid ${info.pid}, but it does not look like annovibe; not stopping it.`);
-      console.error(`command: ${label}`);
-      if (info.cwd) console.error(`cwd: ${info.cwd}`);
+      logSkippedProcess(info, listenPort);
     }
   }
 
@@ -532,21 +537,44 @@ async function stopManagedServer(quiet = false) {
     return 0;
   }
 
-  const supervisorPid = state.supervisorPid;
-  const nextPid = state.nextPid;
+  const supervisorPid = Number(state.supervisorPid);
+  const nextPid = Number(state.nextPid);
+  const statePort = state.port ?? port;
+  const candidatePids = [...new Set([supervisorPid, nextPid])]
+    .filter((pid) => Number.isInteger(pid) && pid > 0 && isPidAlive(pid));
+
   let stopped = true;
-  if (isPidAlive(supervisorPid)) {
-    stopped = await terminatePid(supervisorPid);
+  let verifiedCount = 0;
+  const stoppedPids = [];
+  for (const pid of candidatePids) {
+    const info = getProcessSummary(pid);
+    if (!looksLikeAnnoVibeProcess(info)) {
+      logSkippedProcess(info);
+      continue;
+    }
+    verifiedCount += 1;
+    const candidateStopped = await terminatePid(pid);
+    if (candidateStopped) stoppedPids.push(pid);
+    stopped = candidateStopped && stopped;
   }
-  if (nextPid && isPidAlive(nextPid)) {
-    stopped = (await terminatePid(nextPid)) && stopped;
+
+  const portStop = await stopVerifiedPortListeners(statePort, quiet);
+  if (portStop.found) {
+    stopped = portStop.stopped && stopped;
   }
+
   if (stopped) {
     removeState();
-    if (!quiet) console.log(`annovibe stop: stopped${supervisorPid ? ` pid ${supervisorPid}` : ""}`);
+    if (!quiet) {
+      if (verifiedCount > 0) {
+        console.log(`annovibe stop: stopped pid${stoppedPids.length === 1 ? "" : "s"} ${stoppedPids.join(", ")}`);
+      } else if (!portStop.found) {
+        console.log("annovibe stop: state was stale; cleaned up");
+      }
+    }
     return 0;
   }
-  if (!quiet) console.error(`annovibe stop: failed to stop pid ${supervisorPid}`);
+  if (!quiet) console.error(`annovibe stop: failed to stop annovibe process${verifiedCount === 1 ? "" : "es"}`);
   return 1;
 }
 
@@ -855,21 +883,21 @@ async function maybeSetupAuth() {
 
 function seedDefaults() {
   const defaultSoulSrc = path.join(pkgDir, "lib", "default-soul.md");
-  const soulDest = path.join(agentDir, "soul.md");
+  const soulDest = path.join(agentDir, "SOUL.md");
   if (!fs.existsSync(soulDest) && fs.existsSync(defaultSoulSrc)) {
     const dir = path.dirname(soulDest);
     if (!fs.existsSync(dir)) fs.mkdirSync(dir, { recursive: true });
     fs.copyFileSync(defaultSoulSrc, soulDest);
-    console.log("   🖖 Default soul.md seeded to ~/.pi/agent/soul.md");
+    console.log("   🖖 Default SOUL.md seeded to ~/.pi/agent/SOUL.md");
   }
 
   const defaultHarnessSrc = path.join(pkgDir, "lib", "visualization-harness.md");
-  const harnessDest = path.join(agentDir, "harness.md");
+  const harnessDest = path.join(agentDir, "HARNESS.md");
   if (!fs.existsSync(harnessDest) && fs.existsSync(defaultHarnessSrc)) {
     const dir = path.dirname(harnessDest);
     if (!fs.existsSync(dir)) fs.mkdirSync(dir, { recursive: true });
     fs.copyFileSync(defaultHarnessSrc, harnessDest);
-    console.log("   📊 Default harness.md seeded to ~/.pi/agent/harness.md");
+    console.log("   📊 Default HARNESS.md seeded to ~/.pi/agent/HARNESS.md");
   }
 }
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@seqyuan/annovibe",
-  "version": "0.8.20",
+  "version": "0.8.22",
   "description": "AI-native bioinformatics workspace by Annoroad",
   "license": "MIT",
   "bin": {

package/.next/static/QPlVK8U9LXiQ3z8PnJJLl/_buildManifest.js

@@ -1 +0,0 @@
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