@seqyuan/annodex 0.1.62 → 0.1.64

package/bin/annodex-im-gateway.js

@@ -0,0 +1,555 @@
+#!/usr/bin/env node
+"use strict";
+
+const fs = require("fs");
+const http = require("http");
+const https = require("https");
+const os = require("os");
+const path = require("path");
+const WebSocket = require("ws");
+
+const REVISION_DIGITS = ["\u200b", "\u200c", "\u200d", "\u2060", "\ufeff"];
+const REVISION_SUFFIX_PATTERN = /[\u200b\u200c\u200d\u2060\ufeff]+$/u;
+
+function envFirst(...names) {
+  for (const name of names) {
+    const value = process.env[name];
+    if (value !== undefined && value !== "") return value;
+  }
+  return undefined;
+}
+
+function getAgentDir() {
+  return envFirst("ANNODEX_CONFIG_DIR", "ANNOVIBE_CONFIG_DIR") ?? path.join(os.homedir(), ".config", "annodex");
+}
+
+function readGatewayToken() {
+  const statePath = path.join(getAgentDir(), "im-gateway.json");
+  try {
+    const state = JSON.parse(fs.readFileSync(statePath, "utf8"));
+    return typeof state.token === "string" ? state.token.trim() : "";
+  } catch {
+    return "";
+  }
+}
+
+function resolveBaseUrl() {
+  const explicit = envFirst("ANNODEX_URL", "ANNOVIBE_URL");
+  if (explicit) return explicit.replace(/\/$/, "");
+
+  const port = envFirst("ANNODEX_PORT", "PORT") ?? readStatePort() ?? "30121";
+  const hostname = envFirst("ANNODEX_HOST", "HOSTNAME") ?? "127.0.0.1";
+  return `http://${hostname}:${port}`;
+}
+
+function readStatePort() {
+  const statePath = path.join(getAgentDir(), "annodex.json");
+  try {
+    const state = JSON.parse(fs.readFileSync(statePath, "utf8"));
+    if (state?.port) return String(state.port);
+    if (state?.url) {
+      const url = new URL(String(state.url));
+      return url.port || (url.protocol === "https:" ? "443" : "80");
+    }
+  } catch {
+    // ignore
+  }
+  return undefined;
+}
+
+function requestJson(method, pathname, body) {
+  const baseUrl = resolveBaseUrl();
+  const url = new URL(pathname, baseUrl);
+  const payload = body === undefined ? undefined : JSON.stringify(body);
+  const lib = url.protocol === "https:" ? https : http;
+  const token = readGatewayToken();
+
+  return new Promise((resolve, reject) => {
+    const req = lib.request(
+      url,
+      {
+        method,
+        headers: {
+          ...(payload
+            ? {
+                "Content-Type": "application/json",
+                "Content-Length": Buffer.byteLength(payload),
+              }
+            : {}),
+          ...(token ? { Authorization: `Bearer ${token}` } : {}),
+        },
+      },
+      (res) => {
+        let data = "";
+        res.setEncoding("utf8");
+        res.on("data", (chunk) => { data += chunk; });
+        res.on("end", () => {
+          let parsed;
+          try {
+            parsed = data ? JSON.parse(data) : {};
+          } catch (error) {
+            reject(new Error(`Invalid JSON from ${url}: ${String(error)}`));
+            return;
+          }
+          if (res.statusCode && res.statusCode >= 400) {
+            reject(new Error(parsed.error || parsed.reply || `HTTP ${res.statusCode}`));
+            return;
+          }
+          resolve(parsed);
+        });
+      },
+    );
+    req.on("error", reject);
+    if (payload) req.write(payload);
+    req.end();
+  });
+}
+
+function readSecret(secretPath) {
+  try {
+    const raw = JSON.parse(fs.readFileSync(secretPath, "utf8"));
+    return typeof raw.botSecret === "string" ? raw.botSecret.trim() : "";
+  } catch {
+    return "";
+  }
+}
+
+function formatProcessingPlaceholder(elapsedSeconds) {
+  return `(working ${elapsedSeconds}s)`;
+}
+
+function encodeRevision(revision) {
+  const base = REVISION_DIGITS.length;
+  let remaining = Math.max(1, revision);
+  let encoded = "";
+  while (remaining > 0) {
+    encoded += REVISION_DIGITS[remaining % base];
+    remaining = Math.floor(remaining / base);
+  }
+  return encoded;
+}
+
+function applyWeComRevisionSuffix(text, revision) {
+  return `${text}${encodeRevision(revision)}`;
+}
+
+function asRecord(value) {
+  return value && typeof value === "object" && !Array.isArray(value) ? value : null;
+}
+
+function resolveOptionalString(value) {
+  return typeof value === "string" && value.trim() ? value.trim() : null;
+}
+
+function extractWeComInboundMessage(frame) {
+  const reqId = frame.headers?.req_id?.trim();
+  const body = frame.body;
+  if (!reqId || !body || body.msgtype !== "text") return null;
+
+  const from = asRecord(body.from);
+  const rawUserId = typeof from?.userid === "string" ? from.userid.trim() : "";
+  const textBody = asRecord(body.text);
+  let content = typeof textBody?.content === "string" ? textBody.content.trim() : "";
+  if (!rawUserId || !content) return null;
+
+  const chatId = resolveOptionalString(body.chat_id) || resolveOptionalString(body.room_id) || null;
+  let mentionedBot = false;
+  if (chatId) {
+    const mentions = content.match(/<@[^>]+>\s*/g);
+    if (mentions && mentions.length > 0) {
+      mentionedBot = true;
+      content = content.replace(/<@[^>]+>\s*/g, "").trim();
+    }
+    if (!content) return null;
+  }
+
+  return { reqId, userId: rawUserId, chatId, content, mentionedBot };
+}
+
+function shouldAcceptGroupMessage(message, requireMentionInGroup) {
+  if (!message.chatId) return true;
+  if (!requireMentionInGroup) return true;
+  return message.mentionedBot;
+}
+
+function createDeferred() {
+  let resolve;
+  let reject;
+  const promise = new Promise((res, rej) => {
+    resolve = res;
+    reject = rej;
+  });
+  return { promise, resolve, reject };
+}
+
+class WeComWsClient {
+  constructor(options) {
+    this.options = options;
+    this.ws = null;
+    this.heartbeatTimer = null;
+    this.pendingAcks = new Map();
+    this.authenticated = createDeferred();
+  }
+
+  get isConnected() {
+    return this.ws?.readyState === WebSocket.OPEN;
+  }
+
+  async connect() {
+    if (this.isConnected) return;
+
+    await new Promise((resolve, reject) => {
+      const ws = new WebSocket(this.options.wsUrl?.trim() || "wss://openws.work.weixin.qq.com");
+      this.ws = ws;
+      ws.once("open", () => resolve());
+      ws.once("error", (error) => reject(error));
+      ws.on("error", () => undefined);
+      ws.on("message", (raw) => {
+        void this.handleFrame(String(raw));
+      });
+      ws.on("close", () => {
+        this.stopHeartbeat();
+        this.rejectPendingAcks(new Error("wecom websocket closed"));
+      });
+    });
+
+    await this.sendFrame({
+      cmd: "aibot_subscribe",
+      headers: { req_id: `aibot_subscribe_${Date.now()}` },
+      body: {
+        bot_id: this.options.botId,
+        secret: this.options.botSecret,
+      },
+    });
+  }
+
+  async waitAuthenticated(timeoutMs = 10_000) {
+    const timer = setTimeout(() => {
+      this.authenticated.reject(new Error("wecom authentication timeout"));
+    }, timeoutMs);
+    try {
+      await this.authenticated.promise;
+      return true;
+    } catch {
+      return false;
+    } finally {
+      clearTimeout(timer);
+    }
+  }
+
+  async replyStream(reqId, streamId, content, finish) {
+    await this.sendFrame({
+      cmd: "aibot_respond_msg",
+      headers: { req_id: reqId },
+      body: {
+        msgtype: "stream",
+        stream: { id: streamId, content, finish },
+      },
+    });
+    if (!finish) return;
+    await new Promise((resolve, reject) => {
+      const timeout = setTimeout(() => {
+        this.pendingAcks.delete(reqId);
+        reject(new Error(`wecom reply ack timeout for ${reqId}`));
+      }, 5_000);
+      this.pendingAcks.set(reqId, { resolve, reject, timeout });
+    }).catch(() => undefined);
+  }
+
+  async disconnect() {
+    this.stopHeartbeat();
+    this.rejectPendingAcks(new Error("wecom websocket disconnected"));
+    if (!this.ws) return;
+    const ws = this.ws;
+    this.ws = null;
+    await new Promise((resolve) => {
+      ws.once("close", () => resolve());
+      ws.close();
+    });
+  }
+
+  async handleFrame(frameText) {
+    const frame = JSON.parse(frameText);
+    const reqId = frame.headers?.req_id?.trim();
+
+    if (reqId && this.pendingAcks.has(reqId)) {
+      const pending = this.pendingAcks.get(reqId);
+      if (pending) {
+        this.pendingAcks.delete(reqId);
+        clearTimeout(pending.timeout);
+        if ((frame.errcode ?? 0) !== 0) {
+          pending.reject(new Error(frame.errmsg || "wecom reply ack failed"));
+        } else {
+          pending.resolve();
+        }
+      }
+      return;
+    }
+
+    if (reqId?.startsWith("aibot_subscribe_")) {
+      if ((frame.errcode ?? 0) !== 0) {
+        this.authenticated.reject(new Error(frame.errmsg || "wecom authentication failed"));
+        return;
+      }
+      this.authenticated.resolve();
+      this.startHeartbeat();
+      return;
+    }
+
+    if (reqId?.startsWith("ping_")) return;
+
+    if (frame.cmd === "aibot_msg_callback" || frame.cmd === "aibot_event_callback") {
+      await this.options.onMessage(frame);
+    }
+  }
+
+  startHeartbeat() {
+    this.stopHeartbeat();
+    const intervalMs = Math.max(1_000, this.options.heartbeatIntervalMs ?? 30_000);
+    this.heartbeatTimer = setInterval(() => {
+      void this.sendFrame({
+        cmd: "ping",
+        headers: { req_id: `ping_${Date.now()}` },
+      }).catch(() => undefined);
+    }, intervalMs);
+  }
+
+  stopHeartbeat() {
+    if (!this.heartbeatTimer) return;
+    clearInterval(this.heartbeatTimer);
+    this.heartbeatTimer = null;
+  }
+
+  async sendFrame(frame) {
+    if (!this.ws || this.ws.readyState !== WebSocket.OPEN) {
+      throw new Error("wecom websocket not connected");
+    }
+    this.ws.send(JSON.stringify(frame));
+  }
+
+  rejectPendingAcks(error) {
+    for (const [reqId, pending] of this.pendingAcks) {
+      this.pendingAcks.delete(reqId);
+      clearTimeout(pending.timeout);
+      pending.reject(error);
+    }
+  }
+}
+
+class WeComLiveReply {
+  constructor(transport, reqId) {
+    this.transport = transport;
+    this.reqId = reqId;
+    this.revision = 0;
+  }
+
+  nextRevision() {
+    this.revision += 1;
+    return this.revision;
+  }
+
+  async beginProcessing() {
+    await this.transport.replyStream(
+      this.reqId,
+      `${Date.now()}-start`,
+      applyWeComRevisionSuffix(formatProcessingPlaceholder(1), this.nextRevision()),
+      true,
+    );
+  }
+
+  async refreshProcessing(elapsedSeconds) {
+    await this.transport.replyStream(
+      this.reqId,
+      `${Date.now()}-progress`,
+      applyWeComRevisionSuffix(formatProcessingPlaceholder(elapsedSeconds), this.nextRevision()),
+      true,
+    );
+  }
+
+  async finish(text) {
+    await this.transport.replyStream(
+      this.reqId,
+      `${Date.now()}-final`,
+      applyWeComRevisionSuffix(text, this.nextRevision()),
+      true,
+    );
+  }
+
+  async fail(text) {
+    await this.finish(text);
+  }
+}
+
+class ProjectWeComBridge {
+  constructor(project) {
+    this.project = project;
+    this.client = null;
+    this.stopped = false;
+    this.reconnectTimer = null;
+  }
+
+  async start() {
+    if (this.stopped) return;
+    const secret = readSecret(this.project.secretPath);
+    if (!secret) {
+      console.error(`[im] missing bot secret for ${this.project.cwd}`);
+      this.scheduleReconnect(30_000);
+      return;
+    }
+
+    this.client = new WeComWsClient({
+      botId: this.project.botId,
+      botSecret: secret,
+      onMessage: (frame) => this.handleFrame(frame),
+    });
+
+    try {
+      await this.client.connect();
+      const ok = await this.client.waitAuthenticated();
+      if (!ok) throw new Error("wecom authentication failed");
+      console.error(`[im] connected project ${this.project.cwd} bot ${this.project.botId}`);
+    } catch (error) {
+      console.error(`[im] connect failed for ${this.project.cwd}: ${String(error)}`);
+      await this.client?.disconnect().catch(() => undefined);
+      this.client = null;
+      this.scheduleReconnect(10_000);
+    }
+  }
+
+  scheduleReconnect(delayMs) {
+    if (this.stopped || this.reconnectTimer) return;
+    this.reconnectTimer = setTimeout(() => {
+      this.reconnectTimer = null;
+      void this.start();
+    }, delayMs);
+  }
+
+  async stop() {
+    this.stopped = true;
+    if (this.reconnectTimer) clearTimeout(this.reconnectTimer);
+    await this.client?.disconnect().catch(() => undefined);
+    this.client = null;
+  }
+
+  async handleFrame(frame) {
+    const inbound = extractWeComInboundMessage(frame);
+    if (!inbound) return;
+    if (!shouldAcceptGroupMessage(inbound, this.project.requireMentionInGroup)) return;
+
+    const reply = new WeComLiveReply(this.client, inbound.reqId);
+    const startedAt = Date.now();
+    let refreshTimer = null;
+
+    try {
+      await reply.beginProcessing();
+      refreshTimer = setInterval(() => {
+        const elapsed = Math.max(1, Math.floor((Date.now() - startedAt) / 1000));
+        void reply.refreshProcessing(elapsed).catch(() => undefined);
+      }, 5_000);
+
+      const result = await requestJson("POST", "/api/im/turn", {
+        cwd: this.project.cwd,
+        userId: inbound.userId,
+        message: inbound.content,
+        chatId: inbound.chatId,
+      });
+
+      const text = typeof result.reply === "string" && result.reply.trim()
+        ? result.reply.trim()
+        : (result.error ? String(result.error) : "No reply from annodex.");
+      await reply.finish(text);
+    } catch (error) {
+      await reply.fail(`annodex IM error: ${String(error)}`);
+    } finally {
+      if (refreshTimer) clearInterval(refreshTimer);
+    }
+  }
+}
+
+class ImGateway {
+  constructor() {
+    this.bridges = new Map();
+    this.pollTimer = null;
+    this.stopped = false;
+  }
+
+  async refreshProjects() {
+    if (this.stopped) return;
+    let payload;
+    try {
+      payload = await requestJson("GET", "/api/im/projects");
+    } catch (error) {
+      console.error(`[im] failed to list projects: ${String(error)}`);
+      return;
+    }
+
+    const projects = Array.isArray(payload.projects) ? payload.projects : [];
+    const activeKeys = new Set();
+
+    for (const project of projects) {
+      if (!project?.cwd || !project?.botId || !project?.secretPath) continue;
+      activeKeys.add(project.cwd);
+      if (this.bridges.has(project.cwd)) {
+        this.bridges.get(project.cwd).project = project;
+        continue;
+      }
+      const bridge = new ProjectWeComBridge(project);
+      this.bridges.set(project.cwd, bridge);
+      void bridge.start();
+    }
+
+    for (const [cwd, bridge] of this.bridges) {
+      if (activeKeys.has(cwd)) continue;
+      await bridge.stop();
+      this.bridges.delete(cwd);
+    }
+  }
+
+  async start() {
+    writeGatewayState({ startedAt: new Date().toISOString(), pid: process.pid });
+    await this.refreshProjects();
+    this.pollTimer = setInterval(() => {
+      void this.refreshProjects();
+    }, 30_000);
+  }
+
+  async stop() {
+    this.stopped = true;
+    if (this.pollTimer) clearInterval(this.pollTimer);
+    for (const bridge of this.bridges.values()) {
+      await bridge.stop();
+    }
+    this.bridges.clear();
+  }
+}
+
+function writeGatewayState(patch) {
+  const statePath = path.join(getAgentDir(), "im-gateway.json");
+  let state = {};
+  try {
+    state = JSON.parse(fs.readFileSync(statePath, "utf8"));
+  } catch {
+    // ignore
+  }
+  fs.mkdirSync(path.dirname(statePath), { recursive: true });
+  fs.writeFileSync(statePath, JSON.stringify({ ...state, ...patch }, null, 2), "utf8");
+}
+
+async function main() {
+  const gateway = new ImGateway();
+  const shutdown = async () => {
+    console.error("[im] shutting down");
+    await gateway.stop();
+    process.exit(0);
+  };
+  process.on("SIGINT", () => { void shutdown(); });
+  process.on("SIGTERM", () => { void shutdown(); });
+
+  console.error(`[im] annodex-im-gateway starting (${resolveBaseUrl()})`);
+  await gateway.start();
+}
+
+main().catch((error) => {
+  console.error(`[im] fatal: ${String(error)}`);
+  process.exit(1);
+});

package/package.json

@@ -1,15 +1,17 @@
 {
   "name": "@seqyuan/annodex",
-  "version": "0.1.62",
+  "version": "0.1.64",
   "description": "AI-native bioinformatics workspace by Annoroad",
   "license": "MIT",
   "bin": {
     "annodex": "bin/annodex.js",
-    "annodex-memory-mcp": "bin/annodex-memory-mcp.js"
+    "annodex-memory-mcp": "bin/annodex-memory-mcp.js",
+    "annodex-im-gateway": "bin/annodex-im-gateway.js"
   },
   "files": [
     "bin",
     "bin/annodex-memory-mcp.js",
+    "bin/annodex-im-gateway.js",
     ".next",
     "!.next/cache",
     "!.next/dev",

package/.next/static/Si53llO9EcOFOOu0WE0gB/_buildManifest.js

@@ -1 +0,0 @@
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