@seqyuan/annodex 0.1.11 → 0.1.12

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (519) hide show
  1. package/app/api/agent/[id]/events/route.ts +94 -0
  2. package/app/api/agent/[id]/route.ts +83 -0
  3. package/app/api/agent/new/route.ts +53 -0
  4. package/app/api/auth/all-providers/route.ts +21 -0
  5. package/app/api/auth/api-key/[provider]/route.ts +7 -0
  6. package/app/api/auth/login/[provider]/route.ts +7 -0
  7. package/app/api/auth/login/route.ts +22 -0
  8. package/app/api/auth/logout/[provider]/route.ts +7 -0
  9. package/app/api/auth/providers/route.ts +15 -0
  10. package/app/api/auth/status/route.ts +6 -0
  11. package/app/api/default-cwd/route.ts +22 -0
  12. package/app/api/files/[...path]/route.ts +621 -0
  13. package/app/api/harness/route.ts +47 -0
  14. package/app/api/home/route.ts +6 -0
  15. package/app/api/internal/runtime/route.ts +26 -0
  16. package/app/api/models/route.ts +67 -0
  17. package/app/api/models-config/discover/route.ts +42 -0
  18. package/app/api/models-config/route.ts +152 -0
  19. package/app/api/models-config/test/route.ts +154 -0
  20. package/app/api/projects/browse/route.ts +51 -0
  21. package/app/api/projects/route.ts +83 -0
  22. package/app/api/reports/[id]/route.ts +108 -0
  23. package/app/api/search/route.ts +122 -0
  24. package/app/api/sessions/[id]/context/route.ts +23 -0
  25. package/app/api/sessions/[id]/route.ts +124 -0
  26. package/app/api/sessions/new/route.ts +5 -0
  27. package/app/api/sessions/route.ts +16 -0
  28. package/app/api/settings/route.ts +51 -0
  29. package/app/api/skills/install/route.ts +249 -0
  30. package/app/api/skills/route.ts +161 -0
  31. package/app/api/skills/search/route.ts +121 -0
  32. package/app/api/soul/route.ts +47 -0
  33. package/app/api/version/route.ts +55 -0
  34. package/app/globals.css +736 -0
  35. package/app/layout.tsx +40 -0
  36. package/app/login/page.tsx +133 -0
  37. package/app/page.tsx +10 -0
  38. package/components/AppShell.tsx +1058 -0
  39. package/components/ChatInput.tsx +1103 -0
  40. package/components/ChatMinimap.tsx +381 -0
  41. package/components/ChatWindow.tsx +576 -0
  42. package/components/CodeMirrorEditor.tsx +137 -0
  43. package/components/ConversationSearch.tsx +369 -0
  44. package/components/DataTableViewer.tsx +248 -0
  45. package/components/FileExplorer.tsx +758 -0
  46. package/components/FileIcons.tsx +241 -0
  47. package/components/FileViewer.tsx +1273 -0
  48. package/components/GlobalFileEditor.tsx +98 -0
  49. package/components/MarkdownRenderer.tsx +331 -0
  50. package/components/MermaidDiagram.tsx +80 -0
  51. package/components/MessageView.tsx +1141 -0
  52. package/components/ModelsConfig.tsx +1991 -0
  53. package/components/ProjectContext.tsx +252 -0
  54. package/components/ProjectFolderPicker.tsx +202 -0
  55. package/components/ProjectsConfig.tsx +288 -0
  56. package/components/ProviderIcons.tsx +91 -0
  57. package/components/ReportPanel.tsx +237 -0
  58. package/components/ResizeHandle.tsx +105 -0
  59. package/components/SessionSidebar.tsx +1464 -0
  60. package/components/SettingsDialog.tsx +287 -0
  61. package/components/SkillsConfig.tsx +1093 -0
  62. package/components/SubagentPanel.tsx +191 -0
  63. package/components/TabBar.tsx +115 -0
  64. package/components/ToolPanel.tsx +131 -0
  65. package/components/WidgetRenderer.tsx +505 -0
  66. package/components/viewers/DocumentToolbar.tsx +78 -0
  67. package/components/viewers/DocxViewer.tsx +97 -0
  68. package/components/viewers/PdfViewer.tsx +206 -0
  69. package/components/viewers/PptxViewer.tsx +240 -0
  70. package/components/viewers/XlsxViewer.tsx +143 -0
  71. package/hooks/useAgentSession.ts +710 -0
  72. package/hooks/useAudio.ts +50 -0
  73. package/hooks/useDragDrop.ts +52 -0
  74. package/hooks/useResizable.ts +60 -0
  75. package/hooks/useTheme.ts +85 -0
  76. package/lib/agent-client.ts +39 -0
  77. package/lib/annodex-config.ts +556 -0
  78. package/lib/auth-token.ts +74 -0
  79. package/lib/auth.ts +90 -0
  80. package/lib/brand.ts +5 -0
  81. package/lib/code-theme.ts +32 -0
  82. package/lib/codex-compat-proxy.ts +1603 -0
  83. package/lib/codex-home.ts +6 -0
  84. package/lib/codex-server.ts +796 -0
  85. package/lib/codex-session.ts +590 -0
  86. package/lib/codex-usage.ts +213 -0
  87. package/lib/file-paths.ts +34 -0
  88. package/lib/model-discovery.ts +379 -0
  89. package/lib/normalize.ts +30 -0
  90. package/lib/npx.ts +87 -0
  91. package/lib/pi-types.ts +49 -0
  92. package/lib/projects.ts +269 -0
  93. package/lib/provider-api.ts +88 -0
  94. package/lib/report-prompt.ts +61 -0
  95. package/lib/report-store.ts +597 -0
  96. package/lib/report-update-parser.ts +66 -0
  97. package/lib/rpc-manager.ts +668 -0
  98. package/lib/runtime-state.ts +117 -0
  99. package/lib/session-reader.ts +903 -0
  100. package/lib/session-runtime.ts +105 -0
  101. package/lib/subagent-progress.ts +279 -0
  102. package/lib/types.ts +241 -0
  103. package/lib/widget-export.ts +318 -0
  104. package/lib/widget-guidelines.ts +288 -0
  105. package/lib/widget-prompt.ts +76 -0
  106. package/lib/widget-utils.ts +523 -0
  107. package/package.json +23 -18
  108. package/postcss.config.mjs +8 -0
  109. package/proxy.ts +64 -0
  110. package/scripts/postinstall.cjs +25 -0
  111. package/tsconfig.json +41 -0
  112. package/.next/BUILD_ID +0 -1
  113. package/.next/app-path-routes-manifest.json +0 -39
  114. package/.next/build-manifest.json +0 -20
  115. package/.next/diagnostics/build-diagnostics.json +0 -6
  116. package/.next/diagnostics/framework.json +0 -1
  117. package/.next/export-marker.json +0 -6
  118. package/.next/images-manifest.json +0 -68
  119. package/.next/next-minimal-server.js.nft.json +0 -1
  120. package/.next/next-server.js.nft.json +0 -1
  121. package/.next/package.json +0 -1
  122. package/.next/prerender-manifest.json +0 -109
  123. package/.next/react-loadable-manifest.json +0 -2320
  124. package/.next/required-server-files.js +0 -343
  125. package/.next/required-server-files.json +0 -343
  126. package/.next/routes-manifest.json +0 -286
  127. package/.next/server/app/_global-error/page.js +0 -32
  128. package/.next/server/app/_global-error/page.js.nft.json +0 -1
  129. package/.next/server/app/_global-error/page_client-reference-manifest.js +0 -1
  130. package/.next/server/app/_global-error.html +0 -1
  131. package/.next/server/app/_global-error.meta +0 -16
  132. package/.next/server/app/_global-error.rsc +0 -14
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  134. package/.next/server/app/_global-error.segments/_global-error/__PAGE__.segment.rsc +0 -5
  135. package/.next/server/app/_global-error.segments/_global-error.segment.rsc +0 -5
  136. package/.next/server/app/_global-error.segments/_head.segment.rsc +0 -5
  137. package/.next/server/app/_global-error.segments/_index.segment.rsc +0 -5
  138. package/.next/server/app/_global-error.segments/_tree.segment.rsc +0 -1
  139. package/.next/server/app/_not-found/page.js +0 -2
  140. package/.next/server/app/_not-found/page.js.nft.json +0 -1
  141. package/.next/server/app/_not-found/page_client-reference-manifest.js +0 -1
  142. package/.next/server/app/_not-found.html +0 -1
  143. package/.next/server/app/_not-found.meta +0 -16
  144. package/.next/server/app/_not-found.rsc +0 -18
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  146. package/.next/server/app/_not-found.segments/_head.segment.rsc +0 -6
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  149. package/.next/server/app/_not-found.segments/_not-found.segment.rsc +0 -5
  150. package/.next/server/app/_not-found.segments/_tree.segment.rsc +0 -4
  151. package/.next/server/app/api/agent/[id]/events/route.js +0 -3
  152. package/.next/server/app/api/agent/[id]/events/route.js.nft.json +0 -1
  153. package/.next/server/app/api/agent/[id]/events/route_client-reference-manifest.js +0 -1
  154. package/.next/server/app/api/agent/[id]/route.js +0 -1
  155. package/.next/server/app/api/agent/[id]/route.js.nft.json +0 -1
  156. package/.next/server/app/api/agent/[id]/route_client-reference-manifest.js +0 -1
  157. package/.next/server/app/api/agent/new/route.js +0 -1
  158. package/.next/server/app/api/agent/new/route.js.nft.json +0 -1
  159. package/.next/server/app/api/agent/new/route_client-reference-manifest.js +0 -1
  160. package/.next/server/app/api/auth/all-providers/route.js +0 -1
  161. package/.next/server/app/api/auth/all-providers/route.js.nft.json +0 -1
  162. package/.next/server/app/api/auth/all-providers/route_client-reference-manifest.js +0 -1
  163. package/.next/server/app/api/auth/api-key/[provider]/route.js +0 -1
  164. package/.next/server/app/api/auth/api-key/[provider]/route.js.nft.json +0 -1
  165. package/.next/server/app/api/auth/api-key/[provider]/route_client-reference-manifest.js +0 -1
  166. package/.next/server/app/api/auth/login/[provider]/route.js +0 -1
  167. package/.next/server/app/api/auth/login/[provider]/route.js.nft.json +0 -1
  168. package/.next/server/app/api/auth/login/[provider]/route_client-reference-manifest.js +0 -1
  169. package/.next/server/app/api/auth/login/route.js +0 -1
  170. package/.next/server/app/api/auth/login/route.js.nft.json +0 -1
  171. package/.next/server/app/api/auth/login/route_client-reference-manifest.js +0 -1
  172. package/.next/server/app/api/auth/logout/[provider]/route.js +0 -1
  173. package/.next/server/app/api/auth/logout/[provider]/route.js.nft.json +0 -1
  174. package/.next/server/app/api/auth/logout/[provider]/route_client-reference-manifest.js +0 -1
  175. package/.next/server/app/api/auth/providers/route.js +0 -1
  176. package/.next/server/app/api/auth/providers/route.js.nft.json +0 -1
  177. package/.next/server/app/api/auth/providers/route_client-reference-manifest.js +0 -1
  178. package/.next/server/app/api/auth/status/route.js +0 -1
  179. package/.next/server/app/api/auth/status/route.js.nft.json +0 -1
  180. package/.next/server/app/api/auth/status/route_client-reference-manifest.js +0 -1
  181. package/.next/server/app/api/default-cwd/route.js +0 -1
  182. package/.next/server/app/api/default-cwd/route.js.nft.json +0 -1
  183. package/.next/server/app/api/default-cwd/route_client-reference-manifest.js +0 -1
  184. package/.next/server/app/api/files/[...path]/route.js +0 -4
  185. package/.next/server/app/api/files/[...path]/route.js.nft.json +0 -1
  186. package/.next/server/app/api/files/[...path]/route_client-reference-manifest.js +0 -1
  187. package/.next/server/app/api/harness/route.js +0 -1
  188. package/.next/server/app/api/harness/route.js.nft.json +0 -1
  189. package/.next/server/app/api/harness/route_client-reference-manifest.js +0 -1
  190. package/.next/server/app/api/home/route.js +0 -1
  191. package/.next/server/app/api/home/route.js.nft.json +0 -1
  192. package/.next/server/app/api/home/route_client-reference-manifest.js +0 -1
  193. package/.next/server/app/api/internal/runtime/route.js +0 -1
  194. package/.next/server/app/api/internal/runtime/route.js.nft.json +0 -1
  195. package/.next/server/app/api/internal/runtime/route_client-reference-manifest.js +0 -1
  196. package/.next/server/app/api/models/route.js +0 -1
  197. package/.next/server/app/api/models/route.js.nft.json +0 -1
  198. package/.next/server/app/api/models/route_client-reference-manifest.js +0 -1
  199. package/.next/server/app/api/models-config/discover/route.js +0 -1
  200. package/.next/server/app/api/models-config/discover/route.js.nft.json +0 -1
  201. package/.next/server/app/api/models-config/discover/route_client-reference-manifest.js +0 -1
  202. package/.next/server/app/api/models-config/route.js +0 -1
  203. package/.next/server/app/api/models-config/route.js.nft.json +0 -1
  204. package/.next/server/app/api/models-config/route_client-reference-manifest.js +0 -1
  205. package/.next/server/app/api/models-config/test/route.js +0 -1
  206. package/.next/server/app/api/models-config/test/route.js.nft.json +0 -1
  207. package/.next/server/app/api/models-config/test/route_client-reference-manifest.js +0 -1
  208. package/.next/server/app/api/projects/browse/route.js +0 -1
  209. package/.next/server/app/api/projects/browse/route.js.nft.json +0 -1
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  214. package/.next/server/app/api/reports/[id]/route.js +0 -10
  215. package/.next/server/app/api/reports/[id]/route.js.nft.json +0 -1
  216. package/.next/server/app/api/reports/[id]/route_client-reference-manifest.js +0 -1
  217. package/.next/server/app/api/search/route.js +0 -1
  218. package/.next/server/app/api/search/route.js.nft.json +0 -1
  219. package/.next/server/app/api/search/route_client-reference-manifest.js +0 -1
  220. package/.next/server/app/api/sessions/[id]/context/route.js +0 -1
  221. package/.next/server/app/api/sessions/[id]/context/route.js.nft.json +0 -1
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@@ -0,0 +1,576 @@
1
+ "use client";
2
+
3
+ import { useCallback, useEffect, useRef, useState } from "react";
4
+ import type { AgentMessage, SessionInfo } from "@/lib/types";
5
+ import { MessageView } from "./MessageView";
6
+ import { ChatInput, type ChatInputHandle } from "./ChatInput";
7
+ import { ChatMinimap, useMessageRefs } from "./ChatMinimap";
8
+ import { SubagentPanel, extractSubagentRuns } from "./SubagentPanel";
9
+ import { useAgentSession, type AgentPhase } from "@/hooks/useAgentSession";
10
+ import { useAudio } from "@/hooks/useAudio";
11
+ import { useDragDrop } from "@/hooks/useDragDrop";
12
+ import { parseReportUpdates } from "@/lib/report-update-parser";
13
+ import { APP_NAME } from "@/lib/brand";
14
+ import { mergeSubagentRuns } from "@/lib/subagent-progress";
15
+
16
+ interface Props {
17
+ session: SessionInfo | null;
18
+ newSessionCwd: string | null;
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+ onAgentEnd?: () => void;
20
+ onSessionCreated?: (session: SessionInfo) => void;
21
+ onSessionForked?: (newSessionId: string) => void;
22
+ modelsRefreshKey?: number;
23
+ chatInputRef?: React.RefObject<ChatInputHandle | null>;
24
+ onSystemPromptChange?: (prompt: string | null) => void;
25
+ onSessionStatsChange?: (stats: { tokens: { input: number; output: number; cacheRead: number; cacheWrite: number }; cost?: number } | null) => void;
26
+ onContextUsageChange?: (usage: { percent: number | null; contextWindow: number; tokens: number | null } | null) => void;
27
+ onReportUpdated?: () => void;
28
+ generativeUI?: boolean;
29
+ }
30
+
31
+ function phaseLabel(phase: AgentPhase): string {
32
+ if (phase?.kind === "running_tools") {
33
+ const names = phase.tools.map((t) => t.name);
34
+ if (names.length === 0) return "Running tool...";
35
+ if (names.length === 1) return `Running ${names[0]}...`;
36
+ if (names.length <= 3) return `Running ${names.join(", ")}...`;
37
+ return `Running ${names.slice(0, 2).join(", ")} (+${names.length - 2})...`;
38
+ }
39
+ if (phase?.kind === "waiting_model") return "Waiting for model...";
40
+ return "Thinking...";
41
+ }
42
+
43
+ const TYPEWRITER_PHRASES = [
44
+ "annotate and analyze.",
45
+ "vibe code bioinformatics.",
46
+ "turn data into figures.",
47
+ "inspect your project.",
48
+ "build a reproducible report.",
49
+ "summarize that paper.",
50
+ "review the pipeline.",
51
+ "compare markers.",
52
+ "draft methods.",
53
+ "find the next analysis step.",
54
+ ];
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+
56
+ const BIO_ANALYSIS_RE = /\b(seurat|scanpy|single[- ]cell|scrna|sc[- ]rna|rna[- ]seq|transcriptom|gene|genes|marker|cell type|cluster|clustering|umap|tsne|pca|qc|mitochondrial|percent\.mt|nfeature|ncount|deg|differential expression|go enrichment|kegg|reactome|pathway|gsea|volcano|heatmap|h5ad|rds|loom|mtx|fastq|bam|vcf|counts?|expression|annotation|doublet|batch|integration|harmony|scvi)\b|生信|单细胞|转录组|基因|表达矩阵|差异表达|富集|通路|聚类|细胞类型|细胞注释|质控|线粒体|标记基因|火山图|热图/i;
57
+ const OUTPUT_SUMMARY_RE = /(?:^|[\s(["'`])(?:\.{1,2}\/|\/|~\/)?[A-Za-z0-9_.@+\-/\\]+\/\s*(?:[::-]|[0-9]+|含|共|files?|个文件|PDFs?|PNGs?|输出|output|results?)/im;
58
+ const FILE_OUTPUT_RE = /\.(?:csv|tsv|xlsx|xls|pdf|png|jpg|jpeg|svg|html|r|R|py|rds|h5ad|loom|mtx|tsv\.gz|csv\.gz)\b/i;
59
+
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+ function Typewriter({ phrases }: { phrases: string[] }) {
61
+ const [phraseIdx, setPhraseIdx] = useState(() => Math.floor(Math.random() * phrases.length));
62
+ const [text, setText] = useState("");
63
+ const [deleting, setDeleting] = useState(false);
64
+ const [caretOn, setCaretOn] = useState(true);
65
+
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+ useEffect(() => {
67
+ const blink = setInterval(() => setCaretOn((v) => !v), 530);
68
+ return () => clearInterval(blink);
69
+ }, []);
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+
71
+ useEffect(() => {
72
+ const current = phrases[phraseIdx];
73
+ let timeout: ReturnType<typeof setTimeout>;
74
+ if (!deleting && text === current) {
75
+ timeout = setTimeout(() => setDeleting(true), 1800);
76
+ } else if (deleting && text === "") {
77
+ setDeleting(false);
78
+ setPhraseIdx((i) => (i + 1) % phrases.length);
79
+ } else {
80
+ const next = deleting ? current.slice(0, text.length - 1) : current.slice(0, text.length + 1);
81
+ timeout = setTimeout(() => setText(next), deleting ? 28 : 55);
82
+ }
83
+ return () => clearTimeout(timeout);
84
+ }, [text, deleting, phraseIdx, phrases]);
85
+
86
+ return (
87
+ <span style={{ color: "var(--text-muted)", fontWeight: 400 }}>
88
+ {text}
89
+ <span style={{ opacity: caretOn ? 1 : 0, color: "var(--accent)", marginLeft: 1 }}>▍</span>
90
+ </span>
91
+ );
92
+ }
93
+
94
+ function getMessageText(message: AgentMessage): string {
95
+ const content = message.content;
96
+ if (typeof content === "string") return content;
97
+ if (!Array.isArray(content)) return "";
98
+ return content.map((block) => {
99
+ if (block.type === "text") return block.text;
100
+ if (block.type === "toolCall") return `${block.toolName} ${JSON.stringify(block.input)}`;
101
+ return "";
102
+ }).join("\n");
103
+ }
104
+
105
+ function getLastUserTopic(messages: AgentMessage[]): string {
106
+ for (let i = messages.length - 1; i >= 0; i--) {
107
+ if (messages[i].role !== "user") continue;
108
+ const text = getMessageText(messages[i]).replace(/\s+/g, " ").trim();
109
+ if (text) return text.slice(0, 90);
110
+ }
111
+ return "Current bioinformatics analysis";
112
+ }
113
+
114
+ function getCurrentTurnMessages(messages: AgentMessage[]): AgentMessage[] {
115
+ for (let i = messages.length - 1; i >= 0; i--) {
116
+ if (messages[i].role === "user") return messages.slice(i);
117
+ }
118
+ return messages;
119
+ }
120
+
121
+ function shouldGenerateAnalysisReport(messages: AgentMessage[]): boolean {
122
+ if (messages.length === 0) return false;
123
+ const text = messages.map(getMessageText).join("\n");
124
+ if (!BIO_ANALYSIS_RE.test(text)) return false;
125
+ return FILE_OUTPUT_RE.test(text) || OUTPUT_SUMMARY_RE.test(text) || /\b(saved|wrote|created|exported|generated|output|result)\b|输出|生成|保存|文件/.test(text);
126
+ }
127
+
128
+ export function ChatWindow({ session, newSessionCwd, onAgentEnd, onSessionCreated, onSessionForked, modelsRefreshKey, chatInputRef, onSystemPromptChange, onSessionStatsChange, onContextUsageChange, onReportUpdated, generativeUI }: Props) {
129
+ const {
130
+ data, loading, error, messages, entryIds, streamState,
131
+ agentRunning, modelNames, modelList, modelThinkingLevels, modelThinkingLevelMaps, toolPreset, thinkingLevel,
132
+ retryInfo, contextUsage, forkingEntryId,
133
+ isCompacting, compactError, displayModel: displayModelValue, sessionStats,
134
+ agentPhase, agentError, subagentRuns: runtimeSubagentRuns,
135
+ isNew,
136
+ messagesEndRef, scrollContainerRef,
137
+ lastUserMsgRef,
138
+ handleSend, handleAbort, handleFork, handleModelChange,
139
+ handleCompact, handleAbortCompaction,
140
+ handleToolPresetChange, handleThinkingLevelChange, handleAgentEventRef,
141
+ } = useAgentSession({
142
+ session, newSessionCwd, onAgentEnd, onSessionCreated, onSessionForked,
143
+ modelsRefreshKey, onSystemPromptChange,
144
+ });
145
+
146
+ const { soundEnabled, onSoundToggle, playDoneSound } = useAudio();
147
+ const playDoneSoundRef = useRef(playDoneSound);
148
+ playDoneSoundRef.current = playDoneSound;
149
+ const soundEnabledRef = useRef(soundEnabled);
150
+ soundEnabledRef.current = soundEnabled;
151
+
152
+ // Wrap agent event handler to play sound on agent_end
153
+ const origHandler = handleAgentEventRef.current;
154
+ useEffect(() => {
155
+ handleAgentEventRef.current = (event) => {
156
+ if (event.type === "agent_end" && soundEnabledRef.current) {
157
+ playDoneSoundRef.current();
158
+ }
159
+ origHandler?.(event);
160
+ };
161
+ }, [origHandler, handleAgentEventRef]);
162
+
163
+ // Push session stats up to AppShell for the top bar.
164
+ // Compare scalar fields to avoid loops from new object identity each render.
165
+ const statsKey = sessionStats
166
+ ? `${sessionStats.tokens.input}|${sessionStats.tokens.output}|${sessionStats.tokens.cacheRead}|${sessionStats.tokens.cacheWrite}|${sessionStats.cost ?? 0}`
167
+ : null;
168
+ const sessionStatsRef = useRef(sessionStats);
169
+ sessionStatsRef.current = sessionStats;
170
+ useEffect(() => {
171
+ onSessionStatsChange?.(sessionStatsRef.current);
172
+ }, [statsKey, onSessionStatsChange]);
173
+ useEffect(() => () => { onSessionStatsChange?.(null); }, [onSessionStatsChange]);
174
+
175
+ // Push context usage up to AppShell as well.
176
+ const ctxKey = contextUsage
177
+ ? `${contextUsage.percent ?? "null"}|${contextUsage.contextWindow}|${contextUsage.tokens ?? "null"}`
178
+ : null;
179
+ const contextUsageRef = useRef(contextUsage);
180
+ contextUsageRef.current = contextUsage;
181
+ useEffect(() => {
182
+ onContextUsageChange?.(contextUsageRef.current);
183
+ }, [ctxKey, onContextUsageChange]);
184
+ useEffect(() => () => { onContextUsageChange?.(null); }, [onContextUsageChange]);
185
+
186
+ const onDrop = useCallback((files: File[]) => {
187
+ chatInputRef?.current?.addFiles(files);
188
+ }, [chatInputRef]);
189
+
190
+ const { isDragOver, handleDragEnter, handleDragOver, handleDragLeave, handleDrop } = useDragDrop(onDrop);
191
+ const visibleMessages = messages.filter((m) => m.role === "user" || m.role === "assistant");
192
+ const messageRefs = useMessageRefs(visibleMessages.length);
193
+ const appliedReportUpdatesRef = useRef<Set<string>>(new Set());
194
+ const generatedReportTopicsRef = useRef<Set<string>>(new Set());
195
+
196
+ useEffect(() => {
197
+ appliedReportUpdatesRef.current.clear();
198
+ generatedReportTopicsRef.current.clear();
199
+ }, [session?.id]);
200
+
201
+ useEffect(() => {
202
+ if (!session?.id || agentRunning || streamState.isStreaming) return;
203
+ const updates = messages.flatMap((message) => {
204
+ if (message.role !== "assistant") return [];
205
+ const blocks = Array.isArray(message.content) ? message.content : [];
206
+ return blocks.flatMap((block) => {
207
+ if (block.type !== "text") return [];
208
+ return parseReportUpdates(block.text);
209
+ });
210
+ });
211
+ for (const parsed of updates) {
212
+ const key = `${session.id}:${parsed.raw}`;
213
+ if (appliedReportUpdatesRef.current.has(key)) continue;
214
+ appliedReportUpdatesRef.current.add(key);
215
+ fetch(`/api/reports/${encodeURIComponent(session.id)}`, {
216
+ method: "POST",
217
+ headers: { "Content-Type": "application/json" },
218
+ body: JSON.stringify({ action: "apply_update", update: parsed.update, updateKey: parsed.raw }),
219
+ })
220
+ .then((res) => {
221
+ if (!res.ok) throw new Error(`HTTP ${res.status}`);
222
+ onReportUpdated?.();
223
+ })
224
+ .catch(() => {
225
+ appliedReportUpdatesRef.current.delete(key);
226
+ });
227
+ }
228
+ }, [agentRunning, messages, onReportUpdated, session?.id, streamState.isStreaming]);
229
+
230
+ useEffect(() => {
231
+ if (!session?.id || agentRunning || streamState.isStreaming) return;
232
+ const currentTurnMessages = getCurrentTurnMessages(messages);
233
+ const assistantText = currentTurnMessages
234
+ .filter((message) => message.role === "assistant")
235
+ .map(getMessageText)
236
+ .join("\n");
237
+ if (parseReportUpdates(assistantText).length > 0) return;
238
+ if (!shouldGenerateAnalysisReport(currentTurnMessages)) return;
239
+
240
+ const topic = getLastUserTopic(messages);
241
+ const key = `${session.id}:latest:${topic}`;
242
+ if (generatedReportTopicsRef.current.has(key)) return;
243
+ generatedReportTopicsRef.current.add(key);
244
+ fetch(`/api/reports/${encodeURIComponent(session.id)}`, {
245
+ method: "POST",
246
+ headers: { "Content-Type": "application/json" },
247
+ body: JSON.stringify({ action: "generate", topic }),
248
+ })
249
+ .then((res) => {
250
+ if (!res.ok) throw new Error(`HTTP ${res.status}`);
251
+ onReportUpdated?.();
252
+ })
253
+ .catch(() => {
254
+ generatedReportTopicsRef.current.delete(key);
255
+ });
256
+ }, [agentRunning, messages, onReportUpdated, session?.id, streamState.isStreaming]);
257
+
258
+ const isEmptyNew = isNew && messages.length === 0 && !streamState.isStreaming && !agentRunning;
259
+
260
+ const [subagentPanelOpen, setSubagentPanelOpen] = useState(false);
261
+ const subagentRuns = mergeSubagentRuns(extractSubagentRuns(messages), runtimeSubagentRuns);
262
+ const activeSubagentCount = subagentRuns.filter((run) => run.status === "running" || run.status === "pending").length;
263
+
264
+ useEffect(() => {
265
+ if (subagentRuns.length === 0 && subagentPanelOpen) {
266
+ setSubagentPanelOpen(false);
267
+ }
268
+ }, [subagentRuns.length, subagentPanelOpen]);
269
+
270
+ const availableThinkingLevels = displayModelValue
271
+ ? (modelThinkingLevels[`${displayModelValue.provider}:${displayModelValue.modelId}`] ?? null)
272
+ : null;
273
+
274
+ const currentThinkingLevelMap = displayModelValue
275
+ ? (modelThinkingLevelMaps[`${displayModelValue.provider}:${displayModelValue.modelId}`] ?? null)
276
+ : null;
277
+
278
+ const chatInputElement = (
279
+ <ChatInput
280
+ ref={chatInputRef}
281
+ onSend={handleSend}
282
+ onAbort={handleAbort}
283
+ isStreaming={agentRunning}
284
+ model={displayModelValue}
285
+ modelNames={modelNames}
286
+ modelList={modelList}
287
+ onModelChange={handleModelChange}
288
+ onCompact={session || isNew ? handleCompact : undefined}
289
+ onAbortCompaction={handleAbortCompaction}
290
+ isCompacting={isCompacting}
291
+ compactError={compactError}
292
+ toolPreset={toolPreset}
293
+ onToolPresetChange={session || isNew ? handleToolPresetChange : undefined}
294
+ thinkingLevel={thinkingLevel}
295
+ onThinkingLevelChange={session || isNew ? handleThinkingLevelChange : undefined}
296
+ availableThinkingLevels={availableThinkingLevels}
297
+ thinkingLevelMap={currentThinkingLevelMap}
298
+ retryInfo={retryInfo}
299
+ soundEnabled={soundEnabled}
300
+ onSoundToggle={onSoundToggle}
301
+ />
302
+ );
303
+
304
+ const handleWidgetSendMessage = useCallback((content: string) => {
305
+ if (agentRunning) {
306
+ chatInputRef?.current?.insertText(content);
307
+ } else {
308
+ void handleSend(content);
309
+ }
310
+ }, [agentRunning, chatInputRef, handleSend]);
311
+
312
+ if (loading) {
313
+ return (
314
+ <div className="flex h-full items-center justify-center text-text-muted">
315
+ Loading session...
316
+ </div>
317
+ );
318
+ }
319
+
320
+ if (error) {
321
+ return (
322
+ <div className="flex h-full items-center justify-center text-red-400">
323
+ {error}
324
+ </div>
325
+ );
326
+ }
327
+
328
+ return (
329
+ <div
330
+ className="relative flex h-full flex-col overflow-hidden"
331
+ onDragEnter={handleDragEnter}
332
+ onDragOver={handleDragOver}
333
+ onDragLeave={handleDragLeave}
334
+ onDrop={handleDrop}
335
+ >
336
+ {isDragOver && (
337
+ <div className="pointer-events-none absolute inset-0 z-50 flex animate-[drop-zone-in_0.15s_ease_both] items-center justify-center bg-[rgba(37,99,235,0.06)] backdrop-blur-[1px]">
338
+ <div className="pointer-events-none absolute inset-0 flex items-center justify-center">
339
+ {[0, 0.8, 1.6].map((delay) => (
340
+ <div
341
+ key={delay}
342
+ className="absolute h-[720px] w-[720px] rounded-full border-[1.5px] border-solid border-[rgba(37,99,235,0.5)] animate-[drop-ripple_2.4s_ease-out_infinite_backwards]"
343
+ style={{ transformOrigin: "center", animationDelay: `${delay}s` }}
344
+ />
345
+ ))}
346
+ </div>
347
+ <svg
348
+ width="280" height="280" viewBox="0 0 140 140" fill="none" xmlns="http://www.w3.org/2000/svg"
349
+ className="drop-shadow-[0_6px_18px_rgba(37,99,235,0.18)]"
350
+ >
351
+ <rect x="28" y="44" width="84" height="60" rx="8" fill="rgba(37,99,235,0.08)" stroke="rgba(37,99,235,0.50)" strokeWidth="1.8"/>
352
+ <path d="M36 100 L54 72 L68 88 L80 74 L104 100Z" fill="rgba(37,99,235,0.16)" stroke="rgba(37,99,235,0.40)" strokeWidth="1.4" strokeLinejoin="round"/>
353
+ <circle cx="96" cy="58" r="8" fill="rgba(37,99,235,0.22)" stroke="rgba(37,99,235,0.55)" strokeWidth="1.6"/>
354
+ <g stroke="rgba(37,99,235,0.45)" strokeWidth="1.4" strokeLinecap="round">
355
+ <line x1="96" y1="46" x2="96" y2="43"/>
356
+ <line x1="96" y1="70" x2="96" y2="73"/>
357
+ <line x1="84" y1="58" x2="81" y2="58"/>
358
+ <line x1="108" y1="58" x2="111" y2="58"/>
359
+ <line x1="87.5" y1="49.5" x2="85.4" y2="47.4"/>
360
+ <line x1="104.5" y1="66.5" x2="106.6" y2="68.6"/>
361
+ <line x1="104.5" y1="49.5" x2="106.6" y2="47.4"/>
362
+ <line x1="87.5" y1="66.5" x2="85.4" y2="68.6"/>
363
+ </g>
364
+ </svg>
365
+ </div>
366
+ )}
367
+
368
+ {isEmptyNew ? (
369
+ <div className="flex flex-1 flex-col items-center justify-center overflow-y-auto px-4 py-8">
370
+ <div className="w-full max-w-[820px]">
371
+ <div
372
+ className="mb-3"
373
+ style={{
374
+ display: "flex",
375
+ alignItems: "center",
376
+ justifyContent: "space-between",
377
+ gap: 12,
378
+ marginLeft: 16,
379
+ marginRight: 52,
380
+ fontFamily: "var(--font-mono)",
381
+ }}
382
+ >
383
+ <div style={{ display: "flex", alignItems: "baseline", gap: 10, minWidth: 0, flex: 1, lineHeight: 1.4 }}>
384
+ <span style={{ fontSize: 23, color: "var(--text)", fontWeight: 750, letterSpacing: 0 }}>{APP_NAME}</span>
385
+ <span style={{ fontSize: 14, minWidth: 0, overflow: "hidden", whiteSpace: "nowrap", textOverflow: "ellipsis" }}>
386
+ <Typewriter phrases={TYPEWRITER_PHRASES} />
387
+ </span>
388
+ </div>
389
+ <div style={{ flexShrink: 0, display: "flex", alignItems: "center", justifyContent: "flex-end", minHeight: 22 }}>
390
+ <span style={{ fontSize: 11, color: "var(--text-dim)", whiteSpace: "nowrap" }}>
391
+ v{process.env.NEXT_PUBLIC_APP_VERSION ?? "0.0.0"}
392
+ </span>
393
+ </div>
394
+ </div>
395
+ {chatInputElement}
396
+ </div>
397
+ </div>
398
+ ) : (
399
+ <>
400
+ <div className="relative flex flex-1 overflow-hidden">
401
+ <div ref={scrollContainerRef} className="flex-1 overflow-y-auto pt-4 [scrollbar-width:none]">
402
+ <div className="mx-auto max-w-[820px] px-4">
403
+
404
+ {(() => {
405
+ const toolResultsMap = new Map<string, import("@/lib/types").ToolResultMessage>();
406
+ for (const msg of messages) {
407
+ if (msg.role === "toolResult") {
408
+ toolResultsMap.set((msg as import("@/lib/types").ToolResultMessage).toolCallId, msg as import("@/lib/types").ToolResultMessage);
409
+ }
410
+ }
411
+ let lastUserIdx = -1;
412
+ for (let i = messages.length - 1; i >= 0; i--) {
413
+ if (messages[i].role === "user") { lastUserIdx = i; break; }
414
+ }
415
+ let refIdx = 0;
416
+ return messages.map((msg, idx) => {
417
+ const isVisible = msg.role === "user" || msg.role === "assistant";
418
+ const currentRefIdx = isVisible ? refIdx++ : -1;
419
+ let showTimestamp = false;
420
+ if (msg.role === "assistant") {
421
+ showTimestamp = true;
422
+ for (let j = idx + 1; j < messages.length; j++) {
423
+ const r = messages[j].role;
424
+ if (r === "user") break;
425
+ if (r === "assistant") { showTimestamp = false; break; }
426
+ }
427
+ // Hide on the currently-streaming tail (the streaming bubble owns the live timestamp)
428
+ if (showTimestamp && streamState.isStreaming && idx === messages.length - 1) {
429
+ showTimestamp = false;
430
+ }
431
+ }
432
+ const view = (
433
+ <MessageView
434
+ key={idx}
435
+ message={msg}
436
+ toolResults={toolResultsMap}
437
+ modelNames={modelNames}
438
+ entryId={entryIds[idx]}
439
+ onFork={agentRunning || isNew || (idx === 0 && msg.role === "user") ? undefined : handleFork}
440
+ forking={forkingEntryId === entryIds[idx]}
441
+ onSendMessage={handleWidgetSendMessage}
442
+ showTimestamp={showTimestamp}
443
+ prevTimestamp={idx > 0 ? (messages[idx - 1] as import("@/lib/types").AgentMessage & { timestamp?: number }).timestamp : undefined}
444
+ renderVisualCodeBlocks={!!generativeUI}
445
+ cwd={data?.info?.cwd ?? session?.cwd ?? newSessionCwd ?? undefined}
446
+ />
447
+ );
448
+ if (!isVisible) return view;
449
+ return (
450
+ <div key={idx} ref={(el) => {
451
+ messageRefs.current[currentRefIdx] = el;
452
+ if (idx === lastUserIdx) { (lastUserMsgRef as { current: HTMLDivElement | null }).current = el; }
453
+ }}>
454
+ {view}
455
+ </div>
456
+ );
457
+ });
458
+ })()}
459
+
460
+ {streamState.isStreaming && streamState.streamingMessage && (
461
+ <MessageView message={streamState.streamingMessage as AgentMessage} isStreaming modelNames={modelNames} onSendMessage={handleWidgetSendMessage} renderVisualCodeBlocks={!!generativeUI} cwd={data?.info?.cwd ?? session?.cwd ?? newSessionCwd ?? undefined} />
462
+ )}
463
+
464
+ {agentRunning && !streamState.streamingMessage && (
465
+ <div className="py-2 text-[13px] text-text-muted">
466
+ <span className="animate-[pulse_1.5s_infinite]">{phaseLabel(agentPhase)}</span>
467
+ </div>
468
+ )}
469
+
470
+ {data?.info?.cwd && data.info.cwdExists === false && (
471
+ <div className="my-3 rounded-[7px] border border-[rgba(248,113,113,0.35)] bg-[rgba(248,113,113,0.07)] px-3 py-2 text-[12px] leading-relaxed text-red-400">
472
+ Project directory no longer exists: <code className="font-mono">{data.info.cwd}</code>
473
+ </div>
474
+ )}
475
+
476
+ {agentError && (
477
+ <div className="my-3 rounded-[7px] border border-[rgba(248,113,113,0.35)] bg-[rgba(248,113,113,0.07)] px-3 py-2 text-[12px] leading-relaxed text-red-400">
478
+ {agentError}
479
+ </div>
480
+ )}
481
+
482
+ {agentRunning && (
483
+ <div style={{ height: scrollContainerRef.current ? scrollContainerRef.current.clientHeight : "80vh" }} />
484
+ )}
485
+
486
+ <div ref={messagesEndRef} />
487
+ </div>
488
+ </div>
489
+ <ChatMinimap
490
+ messages={messages}
491
+ streamingMessage={streamState.streamingMessage}
492
+ scrollContainer={scrollContainerRef}
493
+ messageRefs={messageRefs}
494
+ />
495
+ {subagentRuns.length > 0 && (
496
+ <button
497
+ onClick={() => setSubagentPanelOpen((v) => !v)}
498
+ title={subagentPanelOpen ? "Hide agent runs" : "Show agent runs"}
499
+ style={{
500
+ position: "absolute",
501
+ right: subagentPanelOpen ? 260 : 40,
502
+ top: 8,
503
+ minWidth: 28,
504
+ height: 28,
505
+ display: "flex",
506
+ alignItems: "center",
507
+ justifyContent: "center",
508
+ gap: 6,
509
+ padding: activeSubagentCount > 0 || subagentRuns.length > 1 ? "0 8px" : 0,
510
+ background: subagentPanelOpen ? "var(--bg-selected)" : "var(--bg-panel)",
511
+ border: "1px solid var(--border)",
512
+ borderRadius: 6,
513
+ color: subagentPanelOpen ? "var(--accent)" : "var(--text-dim)",
514
+ cursor: "pointer",
515
+ zIndex: 30,
516
+ fontSize: 12,
517
+ transition: "right 0.2s ease, background 0.12s",
518
+ }}
519
+ onMouseEnter={(e) => { if (!subagentPanelOpen) e.currentTarget.style.color = "var(--text)"; }}
520
+ onMouseLeave={(e) => { if (!subagentPanelOpen) e.currentTarget.style.color = "var(--text-dim)"; }}
521
+ >
522
+ <svg width="14" height="14" viewBox="0 0 24 24" fill="none" stroke="currentColor" strokeWidth="2" strokeLinecap="round" strokeLinejoin="round">
523
+ <path d="M17 21v-2a4 4 0 0 0-4-4H5a4 4 0 0 0-4 4v2" />
524
+ <circle cx="9" cy="7" r="4" />
525
+ <path d="M23 21v-2a4 4 0 0 0-3-3.87" />
526
+ <path d="M16 3.13a4 4 0 0 1 0 7.75" />
527
+ </svg>
528
+ {(activeSubagentCount > 0 || subagentRuns.length > 1) && (
529
+ <span style={{ display: "flex", alignItems: "center", gap: 4, fontSize: 10, fontWeight: 700, color: activeSubagentCount > 0 ? "var(--accent)" : "var(--text-dim)" }}>
530
+ {activeSubagentCount > 0 && <span>{activeSubagentCount} active</span>}
531
+ <span>{subagentRuns.length}</span>
532
+ </span>
533
+ )}
534
+ </button>
535
+ )}
536
+ {subagentPanelOpen && subagentRuns.length > 0 && (
537
+ <div
538
+ style={{
539
+ position: "absolute",
540
+ right: 48,
541
+ top: 4,
542
+ bottom: 4,
543
+ width: 250,
544
+ background: "var(--bg)",
545
+ border: "1px solid var(--border)",
546
+ borderRadius: 8,
547
+ boxShadow: "-2px 0 12px rgba(0,0,0,0.08)",
548
+ zIndex: 25,
549
+ overflow: "hidden",
550
+ }}
551
+ >
552
+ <div style={{
553
+ padding: "6px 12px",
554
+ fontSize: 11,
555
+ fontWeight: 600,
556
+ color: "var(--text-dim)",
557
+ borderBottom: "1px solid var(--border)",
558
+ background: "var(--bg-panel)",
559
+ textTransform: "uppercase",
560
+ letterSpacing: "0.05em",
561
+ }}>
562
+ Agent Runs
563
+ </div>
564
+ <SubagentPanel runs={subagentRuns} />
565
+ </div>
566
+ )}
567
+ </div>
568
+
569
+ <div className="relative">
570
+ {chatInputElement}
571
+ </div>
572
+ </>
573
+ )}
574
+ </div>
575
+ );
576
+ }