@seqera/docusaurus-theme-seqera 1.0.0

package/src/styles/typography.css

@@ -0,0 +1,342 @@
+h1,
+h2,
+h3,
+h4,
+h5,
+h6 {
+  font-weight: 600;
+  font-family: var(--font-display);
+  color: var(--ifm-heading-color);
+  scroll-margin-top: calc(var(--ifm-navbar-height) + 3rem);
+}
+
+.navbar__link:where(:hover):not(.navbar__link--active) {
+  opacity: 0.7;
+  transition: all 0.25s;
+}
+.navbar__link {
+  border-bottom: 4px solid transparent;
+}
+.navbar__link--active {
+  border-bottom: 4px solid var(--color-nextflow-600);
+    padding-bottom: 0.1rem;
+}
+
+.table-of-contents__link--active {
+  font-weight: 600;
+}
+
+/***
+main prose styles 
+
+.prose__wrapper for main prose layout styles
+.theme-doc-markdown specifies open-api pages
+
+***/
+
+.prose__wrapper,
+.theme-doc-markdown {
+  /* H1 */
+  h1 {
+    font-size: 2rem;
+    line-height: 1.1;
+    margin-top: 0;
+    margin-bottom: 1.5rem;
+
+    @media (min-width: 997px) {
+      font-size: 2.45rem;
+    }
+  }
+
+  /* H2 */
+  h2 {
+    font-size: 1.8rem;
+    line-height: 1.2;
+    margin-top: 2.5rem;
+    margin-bottom: 1.25rem;
+
+    @media (min-width: 997px) {
+      font-size: 2.25rem;
+    }
+  }
+
+  /* H3 */
+  h3 {
+    font-size: 1.4rem;
+    line-height: 1.3;
+    margin-top: 2rem;
+    margin-bottom: 1rem;
+
+    @media (min-width: 997px) {
+      font-size: 1.6rem;
+    }
+  }
+
+  /* H4 */
+  h4 {
+    font-size: 1.2rem;
+    line-height: 1.4;
+    margin-top: 1.5rem;
+    margin-bottom: 0.75rem;
+
+    @media (min-width: 997px) {
+      font-size: 1.4rem;
+    }
+  }
+
+  /* H5 */
+  h5 {
+    font-size: 1.1rem;
+    line-height: 1.4;
+    margin-top: 1.5rem;
+    margin-bottom: 0.75rem;
+
+    @media (min-width: 997px) {
+      font-size: 1.2rem;
+    }
+  }
+
+  /* H6 */
+  h6 {
+    font-size: 1rem;
+    line-height: 1.4;
+    margin-top: 1.5rem;
+    margin-bottom: 0.75rem;
+
+    @media (min-width: 997px) {
+      font-size: 1.1rem;
+    }
+  }
+
+  /* Paragraphs */
+  p {
+    margin-top: 1.25rem;
+    margin-bottom: 1.25rem;
+    line-height: 1.6;
+    color: var(--ifm-color-content);
+  }
+
+  /* Links */
+  a:not(.btn):not([class*='btn-']):hover {
+    text-decoration: underline;
+    &:hover {
+      color: var(--ifm-color-primary);
+      text-decoration: underline;
+    }
+  }
+
+  .button,
+  button,
+  .btn {
+    text-decoration: none;
+    &:hover {
+      text-decoration: none;
+    }
+  }
+
+  /* Strong/Bold */
+  strong,
+  b {
+    font-weight: 600;
+    color: var(--ifm-color-content);
+  }
+
+  /* Emphasis/Italic */
+  em,
+  i {
+    font-style: italic;
+  }
+
+  /* Lists */
+  ul,
+  ol {
+    margin-top: 1.25rem;
+    margin-bottom: 1.25rem;
+    padding-left: 1.625rem;
+  }
+
+  .breadcrumbs {
+    padding-left: 0;
+  }
+  ul {
+    list-style-type: disc;
+  }
+
+  ol {
+    list-style-type: decimal;
+  }
+
+  li {
+    margin-top: 0.5rem;
+    margin-bottom: 0.5rem;
+    line-height: 1.6;
+  }
+
+  /* Nested lists */
+  ul ul,
+  ul ol,
+  ol ul,
+  ol ol {
+    margin-top: 0.75rem;
+    margin-bottom: 0.75rem;
+  }
+
+  /* Inline code */
+  code:not(pre code) {
+    color: var(--ifm-code-color);
+    background-color: var(--ifm-code-background);
+    padding: 0.2rem 0.4rem;
+    border-radius: 0.25rem;
+    font-size: 0.875em;
+    font-family: var(--ifm-font-family-monospace);
+    border: 1px solid var(--color-gray-400);
+    filter: none;
+    box-shadow: none;
+
+    &::before,
+    &::after {
+      content: none;
+    }
+  }
+
+  /* Code blocks */
+  pre {
+    margin-top: 1.5rem;
+    margin-bottom: 1.5rem;
+    padding: 1rem;
+    border-radius: 0.5rem;
+    overflow-x: auto;
+    background-color: var(--prism-background-color);
+    box-shadow: none;
+    filter: none;
+
+    code {
+      color: var(--prism-color);
+      background-color: transparent;
+      padding: 0;
+      border: none;
+      font-size: 0.875rem;
+      line-height: 1.7;
+      box-shadow: none;
+      filter: none;
+    }
+  }
+
+  /* Blockquotes */
+  blockquote {
+    margin-top: 1.5rem;
+    margin-bottom: 1.5rem;
+    padding-left: 1.5rem;
+    border-left: 4px solid var(--ifm-color-primary);
+    font-style: normal;
+    color: var(--ifm-color-emphasis-700);
+
+    p {
+      margin-top: 0.5rem;
+      margin-bottom: 0.5rem;
+    }
+  }
+
+  /* Horizontal rule */
+  hr {
+    margin-top: 3rem;
+    margin-bottom: 3rem;
+    border: none;
+    border-top: 1px solid var(--ifm-color-emphasis-300);
+  }
+
+  /* Tables */
+  table {
+    width: 100%;
+    margin-top: 2rem;
+    margin-bottom: 2rem;
+    border-collapse: collapse;
+    font-size: 0.875rem;
+    line-height: 1.5;
+  }
+
+  thead {
+    border: 1px solid var(--ifm-color-emphasis-200);
+  }
+
+  th {
+    padding: 0.75rem 1rem;
+    text-align: left;
+    font-weight: 600;
+    color: var(--ifm-heading-color);
+    border: 1px solid var(--ifm-color-emphasis-200);
+  }
+
+  td {
+    padding: 0.75rem 1rem;
+    border: 1px solid var(--ifm-color-emphasis-200);
+  }
+
+  tbody tr:hover {
+    background-color: var(--ifm-hover-overlay);
+  }
+
+  /* Images */
+  img {
+    max-width: 100%;
+    height: auto;
+    margin-top: 2rem;
+    margin-bottom: 2rem;
+    border-radius: 0.5rem;
+  }
+
+  /* Figure/Caption */
+  figure {
+    margin-top: 2rem;
+    margin-bottom: 2rem;
+  }
+
+  figcaption {
+    margin-top: 0.75rem;
+    font-size: 0.875rem;
+    color: var(--ifm-color-emphasis-700);
+    text-align: center;
+  }
+
+  /* Admonitions */
+  .admonition {
+    margin: 1.5rem 0;
+    padding: 1rem;
+    border-radius: 0.5rem;
+    box-shadow: none;
+
+    code:not(pre code) {
+      color: #dc2626;
+    }
+  }
+
+  /* Details/Summary */
+  details {
+    margin-top: 1.5rem;
+    margin-bottom: 1.5rem;
+    padding: 1rem;
+    border: 1px solid var(--ifm-color-emphasis-300);
+    border-radius: 0.5rem;
+  }
+
+  summary {
+    font-weight: 600;
+    cursor: pointer;
+    user-select: none;
+
+    &:hover {
+      color: var(--ifm-color-primary);
+    }
+  }
+}
+
+/* Dark mode overrides */
+[data-theme='dark'] .prose__wrapper {
+  code:not(pre code) {
+    border-color: var(--color-gray-200);
+  }
+
+  .admonition code:not(pre code) {
+    color: #ef4444;
+  }
+}

package/src/theme/Admonition/Icon/Danger.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import type {Props} from '@theme/Admonition/Icon/Danger';
+
+export default function AdmonitionIconDanger(props: Props): ReactNode {
+  return (
+    <svg viewBox="0 0 12 16" {...props}>
+      <path
+        fillRule="evenodd"
+        d="M5.05.31c.81 2.17.41 3.38-.52 4.31C3.55 5.67 1.98 6.45.9 7.98c-1.45 2.05-1.7 6.53 3.53 7.7-2.2-1.16-2.67-4.52-.3-6.61-.61 2.03.53 3.33 1.94 2.86 1.39-.47 2.3.53 2.27 1.67-.02.78-.31 1.44-1.13 1.81 3.42-.59 4.78-3.42 4.78-5.56 0-2.84-2.53-3.22-1.25-5.61-1.52.13-2.03 1.13-1.89 2.75.09 1.08-1.02 1.8-1.86 1.33-.67-.41-.66-1.19-.06-1.78C8.18 5.31 8.68 2.45 5.05.32L5.03.3l.02.01z"
+      />
+    </svg>
+  );
+}

package/src/theme/Admonition/Icon/Info.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import type {Props} from '@theme/Admonition/Icon/Info';
+
+export default function AdmonitionIconInfo(props: Props): ReactNode {
+  return (
+    <svg viewBox="0 0 14 16" {...props}>
+      <path
+        fillRule="evenodd"
+        d="M7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 0 1 1.3 8c0-3.14 2.56-5.7 5.7-5.7zM7 1C3.14 1 0 4.14 0 8s3.14 7 7 7 7-3.14 7-7-3.14-7-7-7zm1 3H6v5h2V4zm0 6H6v2h2v-2z"
+      />
+    </svg>
+  );
+}

package/src/theme/Admonition/Icon/Note.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import type {Props} from '@theme/Admonition/Icon/Note';
+
+export default function AdmonitionIconNote(props: Props): ReactNode {
+  return (
+    <svg viewBox="0 0 14 16" {...props}>
+      <path
+        fillRule="evenodd"
+        d="M6.3 5.69a.942.942 0 0 1-.28-.7c0-.28.09-.52.28-.7.19-.18.42-.28.7-.28.28 0 .52.09.7.28.18.19.28.42.28.7 0 .28-.09.52-.28.7a1 1 0 0 1-.7.3c-.28 0-.52-.11-.7-.3zM8 7.99c-.02-.25-.11-.48-.31-.69-.2-.19-.42-.3-.69-.31H6c-.27.02-.48.13-.69.31-.2.2-.3.44-.31.69h1v3c.02.27.11.5.31.69.2.2.42.31.69.31h1c.27 0 .48-.11.69-.31.2-.19.3-.42.31-.69H8V7.98v.01zM7 2.3c-3.14 0-5.7 2.54-5.7 5.68 0 3.14 2.56 5.7 5.7 5.7s5.7-2.55 5.7-5.7c0-3.15-2.56-5.69-5.7-5.69v.01zM7 .98c3.86 0 7 3.14 7 7s-3.14 7-7 7-7-3.12-7-7 3.14-7 7-7z"
+      />
+    </svg>
+  );
+}

package/src/theme/Admonition/Icon/Tip.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import type {Props} from '@theme/Admonition/Icon/Tip';
+
+export default function AdmonitionIconTip(props: Props): ReactNode {
+  return (
+    <svg viewBox="0 0 12 16" {...props}>
+      <path
+        fillRule="evenodd"
+        d="M6.5 0C3.48 0 1 2.19 1 5c0 .92.55 2.25 1 3 1.34 2.25 1.78 2.78 2 4v1h5v-1c.22-1.22.66-1.75 2-4 .45-.75 1-2.08 1-3 0-2.81-2.48-5-5.5-5zm3.64 7.48c-.25.44-.47.8-.67 1.11-.86 1.41-1.25 2.06-1.45 3.23-.02.05-.02.11-.02.17H5c0-.06 0-.13-.02-.17-.2-1.17-.59-1.83-1.45-3.23-.2-.31-.42-.67-.67-1.11C2.44 6.78 2 5.65 2 5c0-2.2 2.02-4 4.5-4 1.22 0 2.36.42 3.22 1.19C10.55 2.94 11 3.94 11 5c0 .66-.44 1.78-.86 2.48zM4 14h5c-.23 1.14-1.3 2-2.5 2s-2.27-.86-2.5-2z"
+      />
+    </svg>
+  );
+}

package/src/theme/Admonition/Icon/Warning.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import type {Props} from '@theme/Admonition/Icon/Warning';
+
+export default function AdmonitionIconCaution(props: Props): ReactNode {
+  return (
+    <svg viewBox="0 0 16 16" {...props}>
+      <path
+        fillRule="evenodd"
+        d="M8.893 1.5c-.183-.31-.52-.5-.887-.5s-.703.19-.886.5L.138 13.499a.98.98 0 0 0 0 1.001c.193.31.53.501.886.501h13.964c.367 0 .704-.19.877-.5a1.03 1.03 0 0 0 .01-1.002L8.893 1.5zm.133 11.497H6.987v-2.003h2.039v2.003zm0-3.004H6.987V5.987h2.039v4.006z"
+      />
+    </svg>
+  );
+}

package/src/theme/Admonition/Layout/index.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import clsx from 'clsx';
+import {ThemeClassNames} from '@docusaurus/theme-common';
+
+import type {Props} from '@theme/Admonition/Layout';
+
+import styles from './styles.module.css';
+
+function AdmonitionContainer({
+  type,
+  className,
+  children,
+}: Pick<Props, 'type' | 'className'> & {children: ReactNode}) {
+  return (
+    <div
+      className={clsx(
+        ThemeClassNames.common.admonition,
+        ThemeClassNames.common.admonitionType(type),
+        styles.admonition,
+        className,
+        'block shadow-none border border-gray-200',
+      )}>
+      {children}
+    </div>
+  );
+}
+
+function AdmonitionHeading({icon, title}: Pick<Props, 'icon' | 'title'>) {
+  return (
+    <div className={styles.admonitionHeading}>
+      <span className={styles.admonitionIcon}>{icon}</span>
+      {title}
+    </div>
+  );
+}
+
+function AdmonitionContent({children}: Pick<Props, 'children'>) {
+  return children ? (
+    <div className={styles.admonitionContent}>{children}</div>
+  ) : null;
+}
+
+export default function AdmonitionLayout(props: Props): ReactNode {
+  const {type, icon, title, children, className} = props;
+  return (
+    <AdmonitionContainer type={type} className={className}>
+      {title || icon ? <AdmonitionHeading title={title} icon={icon} /> : null}
+      <AdmonitionContent>{children}</AdmonitionContent>
+    </AdmonitionContainer>
+  );
+}

package/src/theme/Admonition/Layout/styles.module.css

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+.admonition {
+  margin-bottom: 1em;
+}
+
+.admonitionHeading {
+  font: var(--ifm-heading-font-weight) var(--ifm-h5-font-size) /
+    var(--ifm-heading-line-height) var(--ifm-heading-font-family);
+  text-transform: uppercase;
+  display: flex;
+  flex-direction: row;
+  justify-content: flex-start;
+  align-items: center;
+}
+
+/* Heading alone without content (does not handle fragment content) */
+.admonitionHeading:not(:last-child) {
+  margin-bottom: 0.3rem;
+}
+
+.admonitionHeading code {
+  text-transform: none;
+}
+
+.admonitionIcon {
+  display: inline-block;
+  vertical-align: middle;
+  margin-right: 0.4em;
+}
+
+.admonitionIcon svg {
+  display: inline-block;
+  height: 0.8rem;
+  width: .8rem;
+  fill: var(--ifm-alert-foreground-color);
+}
+
+.admonitionContent > :last-child {
+  margin-bottom: 0;
+}

package/src/theme/Admonition/Type/Caution.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import clsx from 'clsx';
+import Translate from '@docusaurus/Translate';
+import type {Props} from '@theme/Admonition/Type/Caution';
+import AdmonitionLayout from '@theme/Admonition/Layout';
+import IconWarning from '@theme/Admonition/Icon/Warning';
+
+const infimaClassName = 'alert alert--warning';
+
+const defaultProps = {
+  icon: <IconWarning />,
+  title: (
+    <Translate
+      id="theme.admonition.caution"
+      description="The default label used for the Caution admonition (:::caution)">
+      caution
+    </Translate>
+  ),
+};
+
+// TODO remove before v4: Caution replaced by Warning
+// see https://github.com/facebook/docusaurus/issues/7558
+export default function AdmonitionTypeCaution(props: Props): ReactNode {
+  return (
+    <AdmonitionLayout
+      {...defaultProps}
+      {...props}
+      className={clsx(infimaClassName, props.className)}>
+      {props.children}
+    </AdmonitionLayout>
+  );
+}

package/src/theme/Admonition/Type/Danger.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import clsx from 'clsx';
+import Translate from '@docusaurus/Translate';
+import type {Props} from '@theme/Admonition/Type/Danger';
+import AdmonitionLayout from '@theme/Admonition/Layout';
+import IconDanger from '@theme/Admonition/Icon/Danger';
+
+const infimaClassName = 'alert alert--danger';
+
+const defaultProps = {
+  icon: <IconDanger />,
+  title: (
+    <Translate
+      id="theme.admonition.danger"
+      description="The default label used for the Danger admonition (:::danger)">
+      danger
+    </Translate>
+  ),
+};
+
+export default function AdmonitionTypeDanger(props: Props): ReactNode {
+  return (
+    <AdmonitionLayout
+      {...defaultProps}
+      {...props}
+      className={clsx(infimaClassName, props.className)}>
+      {props.children}
+    </AdmonitionLayout>
+  );
+}

package/src/theme/Admonition/Type/Info.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import clsx from 'clsx';
+import Translate from '@docusaurus/Translate';
+import type {Props} from '@theme/Admonition/Type/Info';
+import AdmonitionLayout from '@theme/Admonition/Layout';
+import IconInfo from '@theme/Admonition/Icon/Info';
+
+const infimaClassName = 'alert alert--info';
+
+const defaultProps = {
+  icon: <IconInfo />,
+  title: (
+    <Translate
+      id="theme.admonition.info"
+      description="The default label used for the Info admonition (:::info)">
+      info
+    </Translate>
+  ),
+};
+
+export default function AdmonitionTypeInfo(props: Props): ReactNode {
+  return (
+    <AdmonitionLayout
+      {...defaultProps}
+      {...props}
+      className={clsx(infimaClassName, props.className)}>
+      {props.children}
+    </AdmonitionLayout>
+  );
+}

package/src/theme/Admonition/Type/Note.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import clsx from 'clsx';
+import Translate from '@docusaurus/Translate';
+import type {Props} from '@theme/Admonition/Type/Note';
+import AdmonitionLayout from '@theme/Admonition/Layout';
+import IconNote from '@theme/Admonition/Icon/Note';
+
+const infimaClassName = 'alert alert--secondary';
+
+const defaultProps = {
+  icon: <IconNote />,
+  title: (
+    <Translate
+      id="theme.admonition.note"
+      description="The default label used for the Note admonition (:::note)">
+      note
+    </Translate>
+  ),
+};
+
+export default function AdmonitionTypeNote(props: Props): ReactNode {
+  return (
+    <AdmonitionLayout
+      {...defaultProps}
+      {...props}
+      className={clsx(infimaClassName, props.className)}>
+      {props.children}
+    </AdmonitionLayout>
+  );
+}

package/src/theme/Admonition/Type/Tip.tsx

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+
+
+import React, {type ReactNode} from 'react';
+import clsx from 'clsx';
+import Translate from '@docusaurus/Translate';
+import type {Props} from '@theme/Admonition/Type/Tip';
+import AdmonitionLayout from '@theme/Admonition/Layout';
+import IconTip from '@theme/Admonition/Icon/Tip';
+
+const infimaClassName = 'alert alert--success';
+
+const defaultProps = {
+  icon: <IconTip />,
+  title: (
+    <Translate
+      id="theme.admonition.tip"
+      description="The default label used for the Tip admonition (:::tip)">
+      tip
+    </Translate>
+  ),
+};
+
+export default function AdmonitionTypeTip(props: Props): ReactNode {
+  return (
+    <AdmonitionLayout
+      {...defaultProps}
+      {...props}
+      className={clsx(infimaClassName, props.className)}>
+      {props.children}
+    </AdmonitionLayout>
+  );
+}