@semiont/make-meaning 0.2.30-build.61 → 0.2.30-build.63

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Files changed (5) hide show
  1. package/README.md +109 -10
  2. package/dist/index.d.ts +471 -159
  3. package/dist/index.js +2912 -1599
  4. package/dist/index.js.map +1 -1
  5. package/package.json +1 -1
package/dist/index.js.map CHANGED
@@ -1 +1 @@
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- {"version":3,"sources":["../src/resource-context.ts","../src/annotation-context.ts","../src/graph-context.ts","../src/annotation-detection.ts","../src/jobs/workers/comment-detection-worker.ts","../src/jobs/workers/highlight-detection-worker.ts","../src/jobs/workers/assessment-detection-worker.ts","../src/jobs/workers/tag-detection-worker.ts","../src/jobs/workers/reference-detection-worker.ts","../src/jobs/workers/generation-worker.ts","../src/index.ts"],"sourcesContent":["/**\n * Resource Context\n *\n * Assembles resource context from view storage and content store\n * Does NOT touch the graph - graph queries go through GraphContext\n */\n\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport type { components } from '@semiont/api-client';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport interface ListResourcesFilters {\n search?: string;\n archived?: boolean;\n}\n\nexport class ResourceContext {\n /**\n * Get resource metadata from view storage\n */\n static async getResourceMetadata(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceDescriptor | null> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const view = await viewStorage.get(resourceId);\n if (!view) {\n return null;\n }\n\n return view.resource;\n }\n\n /**\n * List all resources by scanning view storage\n */\n static async listResources(filters: ListResourcesFilters | undefined, config: EnvironmentConfig): Promise<ResourceDescriptor[]> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const allViews = await viewStorage.getAll();\n const resources: ResourceDescriptor[] = [];\n\n for (const view of allViews) {\n const doc = view.resource;\n\n // Apply filters\n if (filters?.archived !== undefined && doc.archived !== filters.archived) {\n continue;\n }\n\n if (filters?.search) {\n const searchLower = filters.search.toLowerCase();\n if (!doc.name.toLowerCase().includes(searchLower)) {\n continue;\n }\n }\n\n resources.push(doc);\n }\n\n // Sort by creation date (newest first)\n resources.sort((a, b) => {\n const aTime = a.dateCreated ? new Date(a.dateCreated).getTime() : 0;\n const bTime = b.dateCreated ? new Date(b.dateCreated).getTime() : 0;\n return bTime - aTime;\n });\n\n return resources;\n }\n\n /**\n * Add content previews to resources (for search results)\n * Retrieves and decodes the first 200 characters of each resource's primary representation\n */\n static async addContentPreviews(\n resources: ResourceDescriptor[],\n config: EnvironmentConfig\n ): Promise<Array<ResourceDescriptor & { content: string }>> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n return await Promise.all(\n resources.map(async (doc) => {\n try {\n const primaryRep = getPrimaryRepresentation(doc);\n if (primaryRep?.checksum && primaryRep?.mediaType) {\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentPreview = decodeRepresentation(contentBuffer, primaryRep.mediaType).slice(0, 200);\n return { ...doc, content: contentPreview };\n }\n return { ...doc, content: '' };\n } catch {\n return { ...doc, content: '' };\n }\n })\n );\n }\n}\n","/**\n * Annotation Context\n *\n * Assembles annotation context from view storage and content store.\n * Provides methods for:\n * - Getting resource annotations\n * - Building LLM context for annotations\n * - Extracting annotation text context\n * - Generating AI summaries\n */\n\nimport { generateResourceSummary, generateText } from '@semiont/inference';\nimport {\n getBodySource,\n getTargetSource,\n getTargetSelector,\n getResourceEntityTypes,\n getTextPositionSelector,\n getPrimaryRepresentation,\n decodeRepresentation,\n} from '@semiont/api-client';\nimport type { components, AnnotationUri, GenerationContext } from '@semiont/api-client';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport type {\n EnvironmentConfig,\n ResourceId,\n ResourceAnnotations,\n AnnotationId,\n AnnotationCategory,\n} from '@semiont/core';\nimport { resourceId as createResourceId, uriToResourceId } from '@semiont/core';\nimport { getEntityTypes } from '@semiont/ontology';\nimport { ResourceContext } from './resource-context';\n\ntype AnnotationLLMContextResponse = components['schemas']['AnnotationLLMContextResponse'];\ntype TextPositionSelector = components['schemas']['TextPositionSelector'];\ntype TextQuoteSelector = components['schemas']['TextQuoteSelector'];\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\ntype AnnotationContextResponse = components['schemas']['AnnotationContextResponse'];\ntype ContextualSummaryResponse = components['schemas']['ContextualSummaryResponse'];\n\nexport interface BuildContextOptions {\n includeSourceContext?: boolean;\n includeTargetContext?: boolean;\n contextWindow?: number;\n}\n\ninterface AnnotationTextContext {\n before: string;\n selected: string;\n after: string;\n}\n\nexport class AnnotationContext {\n /**\n * Build LLM context for an annotation\n *\n * @param annotationUri - Full annotation URI (e.g., http://localhost:4000/annotations/abc123)\n * @param resourceId - Source resource ID\n * @param config - Application configuration\n * @param options - Context building options\n * @returns Rich context for LLM processing\n * @throws Error if annotation or resource not found\n */\n static async buildLLMContext(\n annotationUri: AnnotationUri,\n resourceId: ResourceId,\n config: EnvironmentConfig,\n options: BuildContextOptions = {}\n ): Promise<AnnotationLLMContextResponse> {\n const {\n includeSourceContext = true,\n includeTargetContext = true,\n contextWindow = 1000\n } = options;\n\n // Validate contextWindow range\n if (contextWindow < 100 || contextWindow > 5000) {\n throw new Error('contextWindow must be between 100 and 5000');\n }\n\n console.log(`[AnnotationContext] buildLLMContext called with annotationUri=${annotationUri}, resourceId=${resourceId}`);\n\n const basePath = config.services.filesystem!.path;\n console.log(`[AnnotationContext] basePath=${basePath}`);\n\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get source resource view\n console.log(`[AnnotationContext] Getting view for resourceId=${resourceId}`);\n let sourceView;\n try {\n sourceView = await viewStorage.get(resourceId);\n console.log(`[AnnotationContext] Got view:`, !!sourceView);\n\n if (!sourceView) {\n throw new Error('Source resource not found');\n }\n } catch (error) {\n console.error(`[AnnotationContext] Error getting view:`, error);\n throw error;\n }\n\n console.log(`[AnnotationContext] Looking for annotation ${annotationUri} in resource ${resourceId}`);\n console.log(`[AnnotationContext] View has ${sourceView.annotations.annotations.length} annotations`);\n console.log(`[AnnotationContext] First 5 annotation IDs:`, sourceView.annotations.annotations.slice(0, 5).map((a: Annotation) => a.id));\n\n // Find the annotation in the view (annotations have full URIs as their id)\n const annotation = sourceView.annotations.annotations.find((a: Annotation) => a.id === annotationUri);\n console.log(`[AnnotationContext] Found annotation:`, !!annotation);\n\n if (!annotation) {\n throw new Error('Annotation not found in view');\n }\n\n const targetSource = getTargetSource(annotation.target);\n // Extract resource ID from the target source URI (format: http://host/resources/{id})\n const targetResourceId = targetSource.split('/').pop();\n console.log(`[AnnotationContext] Target source: ${targetSource}, Expected resource ID: ${resourceId}, Extracted ID: ${targetResourceId}`);\n\n if (targetResourceId !== resourceId) {\n throw new Error(`Annotation target resource ID (${targetResourceId}) does not match expected resource ID (${resourceId})`);\n }\n\n const sourceDoc = sourceView.resource;\n\n // Get target resource if annotation is a reference (has resolved body source)\n const bodySource = getBodySource(annotation.body);\n\n // Extract target document from body source URI if present\n let targetDoc = null;\n if (bodySource) {\n // Inline extraction: \"http://localhost:4000/resources/abc123\" → \"abc123\"\n const parts = (bodySource as string).split('/');\n const lastPart = parts[parts.length - 1];\n if (!lastPart) {\n throw new Error(`Invalid body source URI: ${bodySource}`);\n }\n const targetResourceId = createResourceId(lastPart);\n const targetView = await viewStorage.get(targetResourceId);\n targetDoc = targetView?.resource || null;\n }\n\n // Build source context if requested\n let sourceContext;\n if (includeSourceContext) {\n const primaryRep = getPrimaryRepresentation(sourceDoc);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Source content not found');\n }\n const sourceContent = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentStr = decodeRepresentation(sourceContent, primaryRep.mediaType);\n\n const targetSelectorRaw = getTargetSelector(annotation.target);\n\n // Handle array of selectors - take the first one\n const targetSelector = Array.isArray(targetSelectorRaw) ? targetSelectorRaw[0] : targetSelectorRaw;\n\n console.log(`[AnnotationContext] Target selector type:`, targetSelector?.type);\n\n if (!targetSelector) {\n console.warn(`[AnnotationContext] No target selector found`);\n } else if (targetSelector.type === 'TextPositionSelector') {\n // TypeScript now knows this is TextPositionSelector with required start/end\n const selector = targetSelector as TextPositionSelector;\n const start = selector.start;\n const end = selector.end;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = contentStr.slice(start, end);\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextPositionSelector (${start}-${end})`);\n } else if (targetSelector.type === 'TextQuoteSelector') {\n // TypeScript now knows this is TextQuoteSelector with required exact\n const selector = targetSelector as TextQuoteSelector;\n const exact = selector.exact;\n const index = contentStr.indexOf(exact);\n\n if (index !== -1) {\n const start = index;\n const end = index + exact.length;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = exact;\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextQuoteSelector (found at ${index})`);\n } else {\n console.warn(`[AnnotationContext] TextQuoteSelector exact text not found in content: \"${exact.substring(0, 50)}...\"`);\n }\n } else {\n console.warn(`[AnnotationContext] Unknown selector type: ${(targetSelector as any).type}`);\n }\n }\n\n // Build target context if requested and available\n let targetContext;\n if (includeTargetContext && targetDoc) {\n const targetRep = getPrimaryRepresentation(targetDoc);\n if (targetRep?.checksum && targetRep?.mediaType) {\n const targetContent = await repStore.retrieve(targetRep.checksum, targetRep.mediaType);\n const contentStr = decodeRepresentation(targetContent, targetRep.mediaType);\n\n targetContext = {\n content: contentStr.slice(0, contextWindow * 2),\n summary: await generateResourceSummary(targetDoc.name, contentStr, getResourceEntityTypes(targetDoc), config),\n };\n }\n }\n\n // TODO: Generate suggested resolution using AI\n const suggestedResolution = undefined;\n\n // Build GenerationContext structure\n const generationContext: GenerationContext | undefined = sourceContext ? {\n sourceContext: {\n before: sourceContext.before || '',\n selected: sourceContext.selected,\n after: sourceContext.after || '',\n },\n metadata: {\n resourceType: 'document',\n language: sourceDoc.language as string | undefined,\n entityTypes: getEntityTypes(annotation),\n },\n } : undefined;\n\n const response: AnnotationLLMContextResponse = {\n annotation,\n sourceResource: sourceDoc,\n targetResource: targetDoc,\n ...(generationContext ? { context: generationContext } : {}),\n ...(sourceContext ? { sourceContext } : {}), // Keep for backward compatibility\n ...(targetContext ? { targetContext } : {}),\n ...(suggestedResolution ? { suggestedResolution } : {}),\n };\n\n return response;\n }\n\n /**\n * Get resource annotations from view storage (fast path)\n * Throws if view missing\n */\n static async getResourceAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceAnnotations> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const view = await viewStorage.get(resourceId);\n\n if (!view) {\n throw new Error(`Resource ${resourceId} not found in view storage`);\n }\n\n return view.annotations;\n }\n\n /**\n * Get all annotations\n * @returns Array of all annotation objects\n */\n static async getAllAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n\n // Enrich resolved references with document names\n // NOTE: Future optimization - make this optional via query param if performance becomes an issue\n return await this.enrichResolvedReferences(annotations.annotations, config);\n }\n\n /**\n * Enrich reference annotations with resolved document names\n * Adds _resolvedDocumentName property to annotations that link to documents\n * @private\n */\n private static async enrichResolvedReferences(annotations: Annotation[], config: EnvironmentConfig): Promise<Annotation[]> {\n if (!config.services?.filesystem?.path) {\n return annotations;\n }\n\n // Extract unique resolved document URIs from reference annotations\n const resolvedUris = new Set<string>();\n for (const ann of annotations) {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.purpose === 'linking' && item.source) {\n resolvedUris.add(item.source);\n }\n }\n }\n }\n\n if (resolvedUris.size === 0) {\n return annotations;\n }\n\n // Batch fetch all resolved documents in parallel\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const metadataPromises = Array.from(resolvedUris).map(async (uri) => {\n const docId = uri.split('/resources/')[1];\n if (!docId) return null;\n\n try {\n const view = await viewStorage.get(docId as ResourceId);\n if (view?.resource?.name) {\n return {\n uri,\n metadata: {\n name: view.resource.name,\n mediaType: view.resource.mediaType as string | undefined\n }\n };\n }\n } catch (e) {\n // Document might not exist, skip\n }\n return null;\n });\n\n const results = await Promise.all(metadataPromises);\n const uriToMetadata = new Map<string, { name: string; mediaType?: string }>();\n for (const result of results) {\n if (result) {\n uriToMetadata.set(result.uri, result.metadata);\n }\n }\n\n // Add _resolvedDocumentName and _resolvedDocumentMediaType to annotations\n return annotations.map(ann => {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.purpose === 'linking' && item.source) {\n const metadata = uriToMetadata.get(item.source);\n if (metadata) {\n return {\n ...ann,\n _resolvedDocumentName: metadata.name,\n _resolvedDocumentMediaType: metadata.mediaType\n } as Annotation;\n }\n }\n }\n }\n return ann;\n });\n }\n\n /**\n * Get resource stats (version info)\n * @returns Version and timestamp info for the annotations\n */\n static async getResourceStats(resourceId: ResourceId, config: EnvironmentConfig): Promise<{\n resourceId: ResourceId;\n version: number;\n updatedAt: string;\n }> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n return {\n resourceId: annotations.resourceId,\n version: annotations.version,\n updatedAt: annotations.updatedAt,\n };\n }\n\n /**\n * Check if resource exists in view storage\n */\n static async resourceExists(resourceId: ResourceId, config: EnvironmentConfig): Promise<boolean> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n return await viewStorage.exists(resourceId);\n }\n\n /**\n * Get a single annotation by ID\n * O(1) lookup using resource ID to access view storage\n */\n static async getAnnotation(annotationId: AnnotationId, resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation | null> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n // Extract short ID from annotation's full URI for comparison\n return annotations.annotations.find((a: Annotation) => {\n const shortId = a.id.split('/').pop();\n return shortId === annotationId;\n }) || null;\n }\n\n /**\n * List annotations with optional filtering\n * @param filters - Optional filters like resourceId and type\n * @throws Error if resourceId not provided (cross-resource queries not supported in view storage)\n */\n static async listAnnotations(filters: { resourceId?: ResourceId; type?: AnnotationCategory } | undefined, config: EnvironmentConfig): Promise<Annotation[]> {\n if (!filters?.resourceId) {\n throw new Error('resourceId is required for annotation listing - cross-resource queries not supported in view storage');\n }\n\n // Use view storage directly\n return await this.getAllAnnotations(filters.resourceId, config);\n }\n\n /**\n * Get annotation context (selected text with surrounding context)\n */\n static async getAnnotationContext(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n contextBefore: number,\n contextAfter: number,\n config: EnvironmentConfig\n ): Promise<AnnotationContextResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource metadata from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract context based on annotation position\n const context = this.extractAnnotationContext(annotation, contentStr, contextBefore, contextAfter);\n\n return {\n annotation: annotation,\n context,\n resource: {\n '@context': resource['@context'],\n '@id': resource['@id'],\n name: resource.name,\n entityTypes: resource.entityTypes,\n representations: resource.representations,\n archived: resource.archived,\n creationMethod: resource.creationMethod,\n wasAttributedTo: resource.wasAttributedTo,\n dateCreated: resource.dateCreated,\n },\n };\n }\n\n /**\n * Generate AI summary of annotation in context\n */\n static async generateAnnotationSummary(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<ContextualSummaryResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract annotation text with context (fixed 500 chars for summary)\n const contextSize = 500;\n const context = this.extractAnnotationContext(annotation, contentStr, contextSize, contextSize);\n\n // Extract entity types from annotation body\n const annotationEntityTypes = getEntityTypes(annotation);\n\n // Generate summary using LLM\n const summary = await this.generateSummary(resource, context, annotationEntityTypes, config);\n\n return {\n summary,\n relevantFields: {\n resourceId: resource.id,\n resourceName: resource.name,\n entityTypes: annotationEntityTypes,\n },\n context: {\n before: context.before.substring(Math.max(0, context.before.length - 200)), // Last 200 chars\n selected: context.selected,\n after: context.after.substring(0, 200), // First 200 chars\n },\n };\n }\n\n /**\n * Get resource content as string\n */\n private static async getResourceContent(\n resource: ResourceDescriptor,\n repStore: FilesystemRepresentationStore\n ): Promise<string> {\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Resource content not found');\n }\n const content = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(content, primaryRep.mediaType);\n }\n\n /**\n * Extract annotation context from resource content\n */\n private static extractAnnotationContext(\n annotation: Annotation,\n contentStr: string,\n contextBefore: number,\n contextAfter: number\n ): AnnotationTextContext {\n const targetSelector = getTargetSelector(annotation.target);\n const posSelector = targetSelector ? getTextPositionSelector(targetSelector) : null;\n if (!posSelector) {\n throw new Error('TextPositionSelector required for context');\n }\n\n const selStart = posSelector.start;\n const selEnd = posSelector.end;\n const start = Math.max(0, selStart - contextBefore);\n const end = Math.min(contentStr.length, selEnd + contextAfter);\n\n return {\n before: contentStr.substring(start, selStart),\n selected: contentStr.substring(selStart, selEnd),\n after: contentStr.substring(selEnd, end),\n };\n }\n\n /**\n * Generate LLM summary of annotation in context\n */\n private static async generateSummary(\n resource: ResourceDescriptor,\n context: AnnotationTextContext,\n entityTypes: string[],\n config: EnvironmentConfig\n ): Promise<string> {\n const summaryPrompt = `Summarize this text in context:\n\nContext before: \"${context.before.substring(Math.max(0, context.before.length - 200))}\"\nSelected exact: \"${context.selected}\"\nContext after: \"${context.after.substring(0, 200)}\"\n\nResource: ${resource.name}\nEntity types: ${entityTypes.join(', ')}`;\n\n return await generateText(summaryPrompt, config, 500, 0.5);\n }\n}\n","/**\n * Graph Context\n *\n * Provides graph database operations for resources and annotations.\n * All methods require graph traversal - must use graph database.\n */\n\nimport { getGraphDatabase } from '@semiont/graph';\nimport { resourceIdToURI } from '@semiont/core';\nimport type {\n ResourceId,\n EnvironmentConfig,\n GraphConnection,\n GraphPath,\n} from '@semiont/core';\nimport type { components } from '@semiont/api-client';\n\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport class GraphContext {\n /**\n * Get all resources referencing this resource (backlinks)\n * Requires graph traversal - must use graph database\n */\n static async getBacklinks(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const graphDb = await getGraphDatabase(config);\n const resourceUri = resourceIdToURI(resourceId, config.services.backend!.publicURL);\n return await graphDb.getResourceReferencedBy(resourceUri);\n }\n\n /**\n * Find shortest path between two resources\n * Requires graph traversal - must use graph database\n */\n static async findPath(\n fromResourceId: ResourceId,\n toResourceId: ResourceId,\n config: EnvironmentConfig,\n maxDepth?: number\n ): Promise<GraphPath[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.findPath(fromResourceId, toResourceId, maxDepth);\n }\n\n /**\n * Get resource connections (graph edges)\n * Requires graph traversal - must use graph database\n */\n static async getResourceConnections(resourceId: ResourceId, config: EnvironmentConfig): Promise<GraphConnection[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.getResourceConnections(resourceId);\n }\n\n /**\n * Search resources by name (cross-resource query)\n * Requires full-text search - must use graph database\n */\n static async searchResources(query: string, config: EnvironmentConfig, limit?: number): Promise<ResourceDescriptor[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.searchResources(query, limit);\n }\n}\n","/**\n * Annotation Detection\n *\n * Orchestrates the full annotation detection pipeline:\n * 1. Fetch resource metadata and content\n * 2. Build AI prompts using MotivationPrompts\n * 3. Call AI inference\n * 4. Parse and validate results using MotivationParsers\n *\n * This is the high-level API for AI-powered annotation detection.\n * Workers and other consumers should use these methods instead of\n * implementing detection logic directly.\n */\n\nimport { ResourceContext } from './resource-context';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport {\n MotivationPrompts,\n MotivationParsers,\n generateText,\n type CommentMatch,\n type HighlightMatch,\n type AssessmentMatch,\n type TagMatch,\n} from '@semiont/inference';\nimport { getTagSchema, getSchemaCategory } from '@semiont/ontology';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\nexport class AnnotationDetection {\n /**\n * Detect comments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for comment generation\n * @param tone - Optional tone guidance (e.g., \"academic\", \"conversational\")\n * @param density - Optional target number of comments per 2000 words\n * @returns Array of validated comment matches\n */\n static async detectComments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<CommentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildCommentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 3000, // maxTokens: Higher than highlights/assessments due to comment text\n 0.4 // temperature: Slightly higher to allow creative context\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseComments(response, content);\n }\n\n /**\n * Detect highlights in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for highlight selection\n * @param density - Optional target number of highlights per 2000 words\n * @returns Array of validated highlight matches\n */\n static async detectHighlights(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n density?: number\n ): Promise<HighlightMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildHighlightPrompt(content, instructions, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 2000, // maxTokens: Lower than comments/assessments (no body text)\n 0.3 // temperature: Low for consistent importance judgments\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseHighlights(response, content);\n }\n\n /**\n * Detect assessments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for assessment generation\n * @param tone - Optional tone guidance (e.g., \"critical\", \"supportive\")\n * @param density - Optional target number of assessments per 2000 words\n * @returns Array of validated assessment matches\n */\n static async detectAssessments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<AssessmentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildAssessmentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 3000, // maxTokens: Higher for assessment text\n 0.3 // temperature: Lower for analytical consistency\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseAssessments(response, content);\n }\n\n /**\n * Detect tags in a resource for a specific category\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param schemaId - The tag schema identifier (e.g., \"irac\", \"imrad\")\n * @param category - The specific category to detect\n * @returns Array of validated tag matches\n */\n static async detectTags(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n schemaId: string,\n category: string\n ): Promise<TagMatch[]> {\n // Validate schema and category\n const schema = getTagSchema(schemaId);\n if (!schema) {\n throw new Error(`Invalid tag schema: ${schemaId}`);\n }\n\n const categoryInfo = getSchemaCategory(schemaId, category);\n if (!categoryInfo) {\n throw new Error(`Invalid category \"${category}\" for schema ${schemaId}`);\n }\n\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store (FULL content for structural analysis)\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt with schema and category information\n const prompt = MotivationPrompts.buildTagPrompt(\n content,\n category,\n schema.name,\n schema.description,\n schema.domain,\n categoryInfo.description,\n categoryInfo.examples\n );\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 4000, // maxTokens: Higher for full document analysis\n 0.2 // temperature: Lower for structural consistency\n );\n\n // 5. Parse response (without validation)\n const parsedTags = MotivationParsers.parseTags(response);\n\n // 6. Validate offsets and add category\n return MotivationParsers.validateTagOffsets(parsedTags, content, category);\n }\n\n /**\n * Load resource content from representation store\n * Helper method used by all detection methods\n *\n * @param resourceId - The resource ID to load\n * @param config - Environment configuration\n * @returns Resource content as string, or null if not available\n */\n private static async loadResourceContent(\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<string | null> {\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) return null;\n\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep) return null;\n\n // Only process text content\n const baseMediaType = primaryRep.mediaType?.split(';')[0]?.trim() || '';\n if (baseMediaType !== 'text/plain' && baseMediaType !== 'text/markdown') {\n return null;\n }\n\n if (!primaryRep.checksum || !primaryRep.mediaType) return null;\n\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(contentBuffer, primaryRep.mediaType);\n }\n}\n","/**\n * Comment Detection Worker\n *\n * Processes comment-detection jobs: runs AI inference to identify passages\n * that would benefit from explanatory comments and creates comment annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { Job, CommentDetectionJob, JobQueue } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { CommentMatch } from '@semiont/inference';\n\nexport class CommentDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'CommentDetectionWorker';\n }\n\n protected canProcessJob(job: Job): boolean {\n return job.type === 'comment-detection';\n }\n\n protected async executeJob(job: Job): Promise<void> {\n if (job.type !== 'comment-detection') {\n throw new Error(`Invalid job type: ${job.type}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processCommentDetectionJob(job);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: Job): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.type !== 'comment-detection') return;\n\n const cdJob = job as CommentDetectionJob;\n if (!cdJob.progress) return;\n\n const baseEvent = {\n resourceId: cdJob.resourceId,\n userId: cdJob.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = cdJob.progress.percentage === 100 && cdJob.result;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: cdJob.id,\n jobType: cdJob.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: cdJob.id,\n jobType: cdJob.type,\n result: cdJob.result,\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: cdJob.id,\n jobType: cdJob.type,\n progress: cdJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: Job, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.type === 'comment-detection') {\n const cdJob = job as CommentDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: cdJob.resourceId,\n userId: cdJob.userId,\n version: 1,\n payload: {\n jobId: cdJob.id,\n jobType: cdJob.type,\n error: 'Comment detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processCommentDetectionJob(job: CommentDetectionJob): Promise<void> {\n console.log(`[CommentDetectionWorker] Processing comment detection for resource ${job.resourceId} (job: ${job.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n job.progress = {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n };\n await this.updateJobProgress(job);\n\n // Update progress\n job.progress = {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text and generating comments...'\n };\n await this.updateJobProgress(job);\n\n // Use AI to detect passages needing comments\n const comments = await AnnotationDetection.detectComments(\n job.resourceId,\n this.config,\n job.instructions,\n job.tone,\n job.density\n );\n\n console.log(`[CommentDetectionWorker] Found ${comments.length} comments to create`);\n\n // Update progress\n job.progress = {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${comments.length} annotations...`\n };\n await this.updateJobProgress(job);\n\n // Create annotations for each comment\n let created = 0;\n for (const comment of comments) {\n try {\n await this.createCommentAnnotation(job.resourceId, job.userId, comment);\n created++;\n } catch (error) {\n console.error(`[CommentDetectionWorker] Failed to create comment:`, error);\n }\n }\n\n // Complete job\n job.result = {\n commentsFound: comments.length,\n commentsCreated: created\n };\n\n job.progress = {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} comments`\n };\n\n await this.updateJobProgress(job);\n console.log(`[CommentDetectionWorker] ✅ Created ${created}/${comments.length} comments`);\n }\n\n private async createCommentAnnotation(\n resourceId: ResourceId,\n userId_: string,\n comment: CommentMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n const annotationId = generateAnnotationId(backendUrl);\n\n // Create W3C-compliant annotation with motivation: \"commenting\"\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n type: 'Annotation' as const,\n id: annotationId,\n motivation: 'commenting' as const,\n target: {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: comment.start,\n end: comment.end\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: comment.exact,\n prefix: comment.prefix || '',\n suffix: comment.suffix || ''\n }\n ]\n },\n body: [\n {\n type: 'TextualBody' as const,\n value: comment.comment,\n purpose: 'commenting' as const,\n format: 'text/plain',\n language: 'en'\n }\n ]\n };\n\n // Append annotation.added event to Event Store\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(userId_),\n version: 1,\n payload: {\n annotation\n }\n });\n\n console.log(`[CommentDetectionWorker] Created comment annotation ${annotationId} for \"${comment.exact.substring(0, 50)}...\"`);\n }\n}\n","/**\n * Highlight Detection Worker\n *\n * Processes highlight-detection jobs: runs AI inference to find passages\n * that should be highlighted and creates highlight annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { Job, HighlightDetectionJob, JobQueue } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { HighlightMatch } from '@semiont/inference';\n\nexport class HighlightDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'HighlightDetectionWorker';\n }\n\n protected canProcessJob(job: Job): boolean {\n return job.type === 'highlight-detection';\n }\n\n protected async executeJob(job: Job): Promise<void> {\n if (job.type !== 'highlight-detection') {\n throw new Error(`Invalid job type: ${job.type}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processHighlightDetectionJob(job);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: Job): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.type !== 'highlight-detection') return;\n\n const hlJob = job as HighlightDetectionJob;\n if (!hlJob.progress) return;\n\n const baseEvent = {\n resourceId: hlJob.resourceId,\n userId: hlJob.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = hlJob.progress.percentage === 100 && hlJob.result;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: hlJob.id,\n jobType: hlJob.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: hlJob.id,\n jobType: hlJob.type,\n result: hlJob.result,\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: hlJob.id,\n jobType: hlJob.type,\n progress: hlJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: Job, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.type === 'highlight-detection') {\n const hlJob = job as HighlightDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: hlJob.resourceId,\n userId: hlJob.userId,\n version: 1,\n payload: {\n jobId: hlJob.id,\n jobType: hlJob.type,\n error: 'Highlight detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processHighlightDetectionJob(job: HighlightDetectionJob): Promise<void> {\n console.log(`[HighlightDetectionWorker] Processing highlight detection for resource ${job.resourceId} (job: ${job.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n job.progress = {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n };\n await this.updateJobProgress(job);\n\n // Update progress\n job.progress = {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text...'\n };\n await this.updateJobProgress(job);\n\n // Use AI to detect highlights\n const highlights = await AnnotationDetection.detectHighlights(\n job.resourceId,\n this.config,\n job.instructions,\n job.density\n );\n\n console.log(`[HighlightDetectionWorker] Found ${highlights.length} highlights to create`);\n\n // Update progress\n job.progress = {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${highlights.length} annotations...`\n };\n await this.updateJobProgress(job);\n\n // Create annotations for each highlight\n let created = 0;\n for (const highlight of highlights) {\n try {\n await this.createHighlightAnnotation(job.resourceId, job.userId, highlight);\n created++;\n } catch (error) {\n console.error(`[HighlightDetectionWorker] Failed to create highlight:`, error);\n }\n }\n\n // Complete job\n job.result = {\n highlightsFound: highlights.length,\n highlightsCreated: created\n };\n\n job.progress = {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} highlights`\n };\n\n await this.updateJobProgress(job);\n console.log(`[HighlightDetectionWorker] ✅ Created ${created}/${highlights.length} highlights`);\n }\n\n private async createHighlightAnnotation(\n resourceId: ResourceId,\n creatorUserId: string,\n highlight: HighlightMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) throw new Error('Backend publicURL not configured');\n\n const annotationId = generateAnnotationId(backendUrl);\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n\n // Create W3C annotation with motivation: highlighting\n // Use both TextPositionSelector and TextQuoteSelector (with prefix/suffix for fuzzy anchoring)\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n 'id': annotationId,\n 'motivation': 'highlighting' as const,\n 'creator': userId(creatorUserId),\n 'created': new Date().toISOString(),\n 'target': {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: highlight.start,\n end: highlight.end,\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: highlight.exact,\n ...(highlight.prefix && { prefix: highlight.prefix }),\n ...(highlight.suffix && { suffix: highlight.suffix }),\n },\n ]\n },\n 'body': [] // Empty body for highlights\n };\n\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(creatorUserId),\n version: 1,\n payload: { annotation }\n });\n }\n}\n","/**\n * Assessment Detection Worker\n *\n * Processes assessment-detection jobs: runs AI inference to assess/evaluate\n * passages in the text and creates assessment annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { Job, AssessmentDetectionJob, JobQueue } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { AssessmentMatch } from '@semiont/inference';\n\nexport class AssessmentDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'AssessmentDetectionWorker';\n }\n\n protected canProcessJob(job: Job): boolean {\n return job.type === 'assessment-detection';\n }\n\n protected async executeJob(job: Job): Promise<void> {\n if (job.type !== 'assessment-detection') {\n throw new Error(`Invalid job type: ${job.type}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processAssessmentDetectionJob(job);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: Job): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.type !== 'assessment-detection') return;\n\n const assJob = job as AssessmentDetectionJob;\n if (!assJob.progress) return;\n\n const baseEvent = {\n resourceId: assJob.resourceId,\n userId: assJob.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = assJob.progress.percentage === 100 && assJob.result;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: assJob.id,\n jobType: assJob.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: assJob.id,\n jobType: assJob.type,\n result: assJob.result,\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: assJob.id,\n jobType: assJob.type,\n progress: assJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: Job, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.type === 'assessment-detection') {\n const aJob = job as AssessmentDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: aJob.resourceId,\n userId: aJob.userId,\n version: 1,\n payload: {\n jobId: aJob.id,\n jobType: aJob.type,\n error: 'Assessment detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processAssessmentDetectionJob(job: AssessmentDetectionJob): Promise<void> {\n console.log(`[AssessmentDetectionWorker] Processing assessment detection for resource ${job.resourceId} (job: ${job.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n job.progress = {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n };\n await this.updateJobProgress(job);\n\n // Update progress\n job.progress = {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text...'\n };\n await this.updateJobProgress(job);\n\n // Use AI to detect assessments\n const assessments = await AnnotationDetection.detectAssessments(\n job.resourceId,\n this.config,\n job.instructions,\n job.tone,\n job.density\n );\n\n console.log(`[AssessmentDetectionWorker] Found ${assessments.length} assessments to create`);\n\n // Update progress\n job.progress = {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${assessments.length} annotations...`\n };\n await this.updateJobProgress(job);\n\n // Create annotations for each assessment\n let created = 0;\n for (const assessment of assessments) {\n try {\n await this.createAssessmentAnnotation(job.resourceId, job.userId, assessment);\n created++;\n } catch (error) {\n console.error(`[AssessmentDetectionWorker] Failed to create assessment:`, error);\n }\n }\n\n // Complete job\n job.result = {\n assessmentsFound: assessments.length,\n assessmentsCreated: created\n };\n\n job.progress = {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} assessments`\n };\n\n await this.updateJobProgress(job);\n console.log(`[AssessmentDetectionWorker] ✅ Created ${created}/${assessments.length} assessments`);\n }\n\n private async createAssessmentAnnotation(\n resourceId: ResourceId,\n creatorUserId: string,\n assessment: AssessmentMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) throw new Error('Backend publicURL not configured');\n\n const annotationId = generateAnnotationId(backendUrl);\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n\n // Create W3C annotation with motivation: assessing\n // Use both TextPositionSelector and TextQuoteSelector (with prefix/suffix for fuzzy anchoring)\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n 'id': annotationId,\n 'motivation': 'assessing' as const,\n 'creator': userId(creatorUserId),\n 'created': new Date().toISOString(),\n 'target': {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: assessment.start,\n end: assessment.end,\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: assessment.exact,\n ...(assessment.prefix && { prefix: assessment.prefix }),\n ...(assessment.suffix && { suffix: assessment.suffix }),\n },\n ]\n },\n 'body': {\n type: 'TextualBody' as const,\n value: assessment.assessment,\n format: 'text/plain'\n }\n };\n\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(creatorUserId),\n version: 1,\n payload: { annotation }\n });\n }\n}\n","/**\n * Tag Detection Worker\n *\n * Processes tag-detection jobs: runs AI inference to identify passages\n * serving specific structural roles (IRAC, IMRAD, Toulmin, etc.) and\n * creates tag annotations with dual-body structure.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { Job, TagDetectionJob, JobQueue } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport { getTagSchema } from '@semiont/ontology';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { TagMatch } from '@semiont/inference';\n\nexport class TagDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'TagDetectionWorker';\n }\n\n protected canProcessJob(job: Job): boolean {\n return job.type === 'tag-detection';\n }\n\n protected async executeJob(job: Job): Promise<void> {\n if (job.type !== 'tag-detection') {\n throw new Error(`Invalid job type: ${job.type}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processTagDetectionJob(job);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: Job): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.type !== 'tag-detection') return;\n\n const tdJob = job as TagDetectionJob;\n if (!tdJob.progress) return;\n\n const baseEvent = {\n resourceId: tdJob.resourceId,\n userId: tdJob.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = tdJob.progress.percentage === 100 && tdJob.result;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: tdJob.id,\n jobType: tdJob.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: tdJob.id,\n jobType: tdJob.type,\n result: tdJob.result,\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: tdJob.id,\n jobType: tdJob.type,\n progress: tdJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: Job, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.type === 'tag-detection') {\n const tdJob = job as TagDetectionJob;\n\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: tdJob.resourceId,\n userId: tdJob.userId,\n version: 1,\n payload: {\n jobId: tdJob.id,\n jobType: tdJob.type,\n error: 'Tag detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processTagDetectionJob(job: TagDetectionJob): Promise<void> {\n console.log(`[TagDetectionWorker] Processing tag detection for resource ${job.resourceId} (job: ${job.id})`);\n\n // Validate schema\n const schema = getTagSchema(job.schemaId);\n if (!schema) {\n throw new Error(`Invalid tag schema: ${job.schemaId}`);\n }\n\n // Validate categories\n for (const category of job.categories) {\n if (!schema.tags.some(t => t.name === category)) {\n throw new Error(`Invalid category \"${category}\" for schema ${job.schemaId}`);\n }\n }\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.resourceId, this.config);\n if (!resource) {\n throw new Error(`Resource ${job.resourceId} not found`);\n }\n\n // Emit job.started\n job.progress = {\n stage: 'analyzing',\n percentage: 10,\n processedCategories: 0,\n totalCategories: job.categories.length,\n message: 'Loading resource...'\n };\n await this.updateJobProgress(job);\n\n // Process each category separately\n const allTags: TagMatch[] = [];\n const byCategory: Record<string, number> = {};\n\n for (let i = 0; i < job.categories.length; i++) {\n const category = job.categories[i]!; // Safe: i < length check guarantees element exists\n\n job.progress = {\n stage: 'analyzing',\n percentage: 10 + Math.floor((i / job.categories.length) * 50),\n currentCategory: category,\n processedCategories: i + 1,\n totalCategories: job.categories.length,\n message: `Analyzing ${category}...`\n };\n await this.updateJobProgress(job);\n\n // Detect tags for this category\n const tags = await AnnotationDetection.detectTags(\n job.resourceId,\n this.config,\n job.schemaId,\n category\n );\n console.log(`[TagDetectionWorker] Found ${tags.length} tags for category \"${category}\"`);\n\n allTags.push(...tags);\n byCategory[category] = tags.length;\n }\n\n // Create annotations\n job.progress = {\n stage: 'creating',\n percentage: 60,\n processedCategories: job.categories.length,\n totalCategories: job.categories.length,\n message: `Creating ${allTags.length} tag annotations...`\n };\n await this.updateJobProgress(job);\n\n let created = 0;\n for (const tag of allTags) {\n try {\n await this.createTagAnnotation(job.resourceId, job.userId, job.schemaId, tag);\n created++;\n } catch (error) {\n console.error(`[TagDetectionWorker] Failed to create tag:`, error);\n }\n }\n\n // Complete job\n job.result = {\n tagsFound: allTags.length,\n tagsCreated: created,\n byCategory\n };\n\n job.progress = {\n stage: 'creating',\n percentage: 100,\n processedCategories: job.categories.length,\n totalCategories: job.categories.length,\n message: `Complete! Created ${created} tags`\n };\n\n await this.updateJobProgress(job);\n console.log(`[TagDetectionWorker] ✅ Created ${created}/${allTags.length} tags across ${job.categories.length} categories`);\n }\n\n private async createTagAnnotation(\n resourceId: ResourceId,\n userId_: string,\n schemaId: string,\n tag: TagMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n const annotationId = generateAnnotationId(backendUrl);\n\n // Create W3C-compliant annotation with dual-body structure:\n // 1. purpose: \"tagging\" with category value\n // 2. purpose: \"classifying\" with schema ID\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n type: 'Annotation' as const,\n id: annotationId,\n motivation: 'tagging' as const,\n target: {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: tag.start,\n end: tag.end\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: tag.exact,\n prefix: tag.prefix || '',\n suffix: tag.suffix || ''\n }\n ]\n },\n body: [\n {\n type: 'TextualBody' as const,\n value: tag.category,\n purpose: 'tagging' as const,\n format: 'text/plain',\n language: 'en'\n },\n {\n type: 'TextualBody' as const,\n value: schemaId,\n purpose: 'classifying' as const,\n format: 'text/plain'\n }\n ]\n };\n\n // Append annotation.added event to Event Store\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(userId_),\n version: 1,\n payload: {\n annotation\n }\n });\n\n console.log(`[TagDetectionWorker] Created tag annotation ${annotationId} for \"${tag.category}\": \"${tag.exact.substring(0, 50)}...\"`);\n }\n}\n","/**\n * Reference Detection Worker\n *\n * Processes detection jobs: runs AI inference to find entities in resources\n * and emits reference.created events for each detected entity.\n *\n * This worker is INDEPENDENT of HTTP clients - it just processes jobs and emits events.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { Job, DetectionJob, JobQueue } from '@semiont/jobs';\nimport { ResourceContext } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig } from '@semiont/core';\nimport {\n type components,\n getPrimaryRepresentation,\n decodeRepresentation,\n validateAndCorrectOffsets,\n} from '@semiont/api-client';\nimport { extractEntities } from '@semiont/inference';\nimport { FilesystemRepresentationStore } from '@semiont/content';\n\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport interface DetectedAnnotation {\n annotation: {\n selector: {\n start: number;\n end: number;\n exact: string;\n prefix?: string;\n suffix?: string;\n };\n entityTypes: string[];\n };\n}\n\nexport class ReferenceDetectionWorker extends JobWorker {\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'ReferenceDetectionWorker';\n }\n\n protected canProcessJob(job: Job): boolean {\n return job.type === 'detection';\n }\n\n protected async executeJob(job: Job): Promise<void> {\n if (job.type !== 'detection') {\n throw new Error(`Invalid job type: ${job.type}`);\n }\n\n await this.processDetectionJob(job);\n }\n\n /**\n * Detect entity references in resource using AI\n * Self-contained implementation for reference detection\n *\n * Public for testing charset handling - see entity-detection-charset.test.ts\n */\n public async detectReferences(\n resource: ResourceDescriptor,\n entityTypes: string[],\n includeDescriptiveReferences: boolean = false\n ): Promise<DetectedAnnotation[]> {\n console.log(`Detecting entities of types: ${entityTypes.join(', ')}${includeDescriptiveReferences ? ' (including descriptive references)' : ''}`);\n\n const detectedAnnotations: DetectedAnnotation[] = [];\n\n // Get primary representation\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep) return detectedAnnotations;\n\n // Only process text content (check base media type, ignoring charset parameters)\n const mediaType = primaryRep.mediaType;\n const baseMediaType = mediaType?.split(';')[0]?.trim() || '';\n if (baseMediaType === 'text/plain' || baseMediaType === 'text/markdown') {\n // Load content from representation store using content-addressed lookup\n if (!primaryRep.checksum || !primaryRep.mediaType) return detectedAnnotations;\n\n const basePath = this.config.services.filesystem!.path;\n const projectRoot = this.config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const content = decodeRepresentation(contentBuffer, primaryRep.mediaType);\n\n // Use AI to extract entities (with optional anaphoric/cataphoric references)\n const extractedEntities = await extractEntities(content, entityTypes, this.config, includeDescriptiveReferences);\n\n // Validate and correct AI's offsets, then extract proper context\n // AI sometimes returns offsets that don't match the actual text position\n for (const entity of extractedEntities) {\n try {\n const validated = validateAndCorrectOffsets(\n content,\n entity.startOffset,\n entity.endOffset,\n entity.exact\n );\n\n const annotation: DetectedAnnotation = {\n annotation: {\n selector: {\n start: validated.start,\n end: validated.end,\n exact: validated.exact,\n prefix: validated.prefix,\n suffix: validated.suffix,\n },\n entityTypes: [entity.entityType],\n },\n };\n detectedAnnotations.push(annotation);\n } catch (error) {\n console.warn(`[ReferenceDetectionWorker] Skipping invalid entity \"${entity.exact}\":`, error);\n // Skip this entity - AI hallucinated text that doesn't exist\n }\n }\n }\n\n return detectedAnnotations;\n }\n\n private async processDetectionJob(job: DetectionJob): Promise<void> {\n console.log(`[ReferenceDetectionWorker] Processing detection for resource ${job.resourceId} (job: ${job.id})`);\n console.log(`[ReferenceDetectionWorker] 🔍 Entity types: ${job.entityTypes.join(', ')}`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.resourceId} not found`);\n }\n\n let totalFound = 0;\n let totalEmitted = 0;\n let totalErrors = 0;\n\n // Emit job.started before processing\n job.progress = {\n totalEntityTypes: job.entityTypes.length,\n processedEntityTypes: 0,\n entitiesFound: 0,\n entitiesEmitted: 0\n };\n await this.updateJobProgress(job);\n\n // Process each entity type\n for (let i = 0; i < job.entityTypes.length; i++) {\n const entityType = job.entityTypes[i];\n\n if (!entityType) continue;\n\n console.log(`[ReferenceDetectionWorker] 🤖 [${i + 1}/${job.entityTypes.length}] Detecting ${entityType}...`);\n\n // Detect entities using AI (loads content from filesystem internally)\n const detectedAnnotations = await this.detectReferences(resource, [entityType], job.includeDescriptiveReferences);\n\n totalFound += detectedAnnotations.length;\n console.log(`[ReferenceDetectionWorker] ✅ Found ${detectedAnnotations.length} ${entityType} entities`);\n\n // Emit events for each detected entity\n // This happens INDEPENDENT of any HTTP client!\n for (let idx = 0; idx < detectedAnnotations.length; idx++) {\n const detected = detectedAnnotations[idx];\n\n if (!detected) {\n console.warn(`[ReferenceDetectionWorker] Skipping undefined entity at index ${idx}`);\n continue;\n }\n\n let referenceId: string;\n try {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n referenceId = generateAnnotationId(backendUrl);\n } catch (error) {\n console.error(`[ReferenceDetectionWorker] Failed to generate annotation ID:`, error);\n job.status = 'failed';\n job.error = 'Configuration error: Backend publicURL not set';\n await this.updateJobProgress(job);\n return;\n }\n\n try {\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId: job.resourceId,\n userId: job.userId,\n version: 1,\n payload: {\n annotation: {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n id: referenceId,\n motivation: 'linking' as const,\n target: {\n source: resourceIdToURI(job.resourceId, this.config.services.backend!.publicURL), // Convert to full URI\n selector: [\n {\n type: 'TextPositionSelector',\n start: detected.annotation.selector.start,\n end: detected.annotation.selector.end,\n },\n {\n type: 'TextQuoteSelector',\n exact: detected.annotation.selector.exact,\n ...(detected.annotation.selector.prefix && { prefix: detected.annotation.selector.prefix }),\n ...(detected.annotation.selector.suffix && { suffix: detected.annotation.selector.suffix }),\n },\n ],\n },\n body: (detected.annotation.entityTypes || []).map(et => ({\n type: 'TextualBody' as const,\n value: et,\n purpose: 'tagging' as const,\n })),\n modified: new Date().toISOString(),\n },\n },\n });\n\n totalEmitted++;\n\n if ((idx + 1) % 10 === 0 || idx === detectedAnnotations.length - 1) {\n console.log(`[ReferenceDetectionWorker] 📤 Emitted ${idx + 1}/${detectedAnnotations.length} events for ${entityType}`);\n }\n\n } catch (error) {\n totalErrors++;\n console.error(`[ReferenceDetectionWorker] ❌ Failed to emit event for ${referenceId}:`, error);\n // Continue processing other entities even if one fails\n }\n }\n\n console.log(`[ReferenceDetectionWorker] ✅ Completed ${entityType}: ${detectedAnnotations.length} found, ${detectedAnnotations.length - (totalErrors - (totalFound - totalEmitted))} emitted`);\n\n // Update progress after processing this entity type\n job.progress = {\n totalEntityTypes: job.entityTypes.length,\n processedEntityTypes: i + 1,\n currentEntityType: entityType,\n entitiesFound: totalFound,\n entitiesEmitted: totalEmitted\n };\n await this.updateJobProgress(job);\n }\n\n // Set final result\n job.result = {\n totalFound,\n totalEmitted,\n errors: totalErrors\n };\n\n console.log(`[ReferenceDetectionWorker] ✅ Detection complete: ${totalFound} entities found, ${totalEmitted} events emitted, ${totalErrors} errors`);\n }\n\n protected override async handleJobFailure(job: Job, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.type === 'detection') {\n const detJob = job as DetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: detJob.resourceId,\n userId: detJob.userId,\n version: 1,\n payload: {\n jobId: detJob.id,\n jobType: detJob.type,\n error: 'Entity detection failed. Please try again later.',\n },\n });\n }\n }\n\n /**\n * Update job progress and emit events to Event Store\n * Overrides base class to also emit job progress events\n */\n protected override async updateJobProgress(job: Job): Promise<void> {\n // Call parent to update job queue\n await super.updateJobProgress(job);\n\n // Emit events for detection jobs\n if (job.type !== 'detection') {\n return;\n }\n\n const detJob = job as DetectionJob;\n\n const baseEvent = {\n resourceId: detJob.resourceId,\n userId: detJob.userId,\n version: 1,\n };\n\n // Require progress object to be present\n if (!detJob.progress) {\n return;\n }\n\n // Determine if this is the first progress update (job.started)\n const isFirstUpdate = detJob.progress.processedEntityTypes === 0;\n\n // Determine if this is the final update (job.completed)\n const isFinalUpdate =\n detJob.progress.processedEntityTypes === detJob.progress.totalEntityTypes &&\n detJob.progress.totalEntityTypes > 0;\n\n if (isFirstUpdate) {\n // First progress update - emit job.started\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: detJob.id,\n jobType: detJob.type,\n totalSteps: detJob.entityTypes.length,\n },\n });\n } else if (isFinalUpdate) {\n // Final progress update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: detJob.id,\n jobType: detJob.type,\n foundCount: detJob.progress.entitiesFound,\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n const percentage = Math.round((detJob.progress.processedEntityTypes / detJob.progress.totalEntityTypes) * 100);\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: detJob.id,\n jobType: detJob.type,\n percentage,\n currentStep: detJob.progress.currentEntityType,\n processedSteps: detJob.progress.processedEntityTypes,\n totalSteps: detJob.progress.totalEntityTypes,\n foundCount: detJob.progress.entitiesFound,\n },\n });\n }\n }\n}\n","/**\n * Generation Worker\n *\n * Processes generation jobs: runs AI inference to generate new resources\n * and emits resource.created and annotation.body.updated events.\n *\n * This worker is INDEPENDENT of HTTP clients - it just processes jobs and emits events.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { Job, GenerationJob, JobQueue } from '@semiont/jobs';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { ResourceContext } from '../..';\nimport { generateResourceFromTopic } from '@semiont/inference';\nimport {\n getTargetSelector,\n getExactText,\n resourceUri,\n annotationUri,\n} from '@semiont/api-client';\nimport { getEntityTypes } from '@semiont/ontology';\nimport {\n CREATION_METHODS,\n generateUuid,\n type BodyOperation,\n resourceId,\n annotationId,\n} from '@semiont/core';\nimport { EventStore } from '@semiont/event-sourcing';\nimport type { EnvironmentConfig } from '@semiont/core';\n\nexport class GenerationWorker extends JobWorker {\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'GenerationWorker';\n }\n\n protected canProcessJob(job: Job): boolean {\n return job.type === 'generation';\n }\n\n protected async executeJob(job: Job): Promise<void> {\n if (job.type !== 'generation') {\n throw new Error(`Invalid job type: ${job.type}`);\n }\n\n await this.processGenerationJob(job);\n }\n\n private async processGenerationJob(job: GenerationJob): Promise<void> {\n console.log(`[GenerationWorker] Processing generation for reference ${job.referenceId} (job: ${job.id})`);\n\n const basePath = this.config.services.filesystem!.path;\n const projectRoot = this.config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Update progress: fetching\n job.progress = {\n stage: 'fetching',\n percentage: 20,\n message: 'Fetching source resource...'\n };\n console.log(`[GenerationWorker] 📥 ${job.progress.message}`);\n await this.updateJobProgress(job);\n\n // Fetch annotation from view storage\n // TODO: Once AnnotationContext is consolidated, use it here\n const { FilesystemViewStorage } = await import('@semiont/event-sourcing');\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const view = await viewStorage.get(job.sourceResourceId);\n if (!view) {\n throw new Error(`Resource ${job.sourceResourceId} not found`);\n }\n const projection = view.annotations;\n\n // Construct full annotation URI for comparison\n const expectedAnnotationUri = `${this.config.services.backend!.publicURL}/annotations/${job.referenceId}`;\n const annotation = projection.annotations.find((a: any) =>\n a.id === expectedAnnotationUri && a.motivation === 'linking'\n );\n\n if (!annotation) {\n throw new Error(`Annotation ${job.referenceId} not found in resource ${job.sourceResourceId}`);\n }\n\n const sourceResource = await ResourceContext.getResourceMetadata(job.sourceResourceId, this.config);\n if (!sourceResource) {\n throw new Error(`Source resource ${job.sourceResourceId} not found`);\n }\n\n // Determine resource name\n const targetSelector = getTargetSelector(annotation.target);\n const resourceName = job.title || (targetSelector ? getExactText(targetSelector) : '') || 'New Resource';\n console.log(`[GenerationWorker] Generating resource: \"${resourceName}\"`);\n\n // Verify context is provided (required for generation)\n if (!job.context) {\n throw new Error('Generation context is required but was not provided in job');\n }\n console.log(`[GenerationWorker] Using pre-fetched context: ${job.context.sourceContext?.before?.length || 0} chars before, ${job.context.sourceContext?.selected?.length || 0} chars selected, ${job.context.sourceContext?.after?.length || 0} chars after`);\n\n // Update progress: generating (skip fetching context since it's already in job)\n job.progress = {\n stage: 'generating',\n percentage: 40,\n message: 'Creating content with AI...'\n };\n console.log(`[GenerationWorker] 🤖 ${job.progress.message}`);\n await this.updateJobProgress(job);\n\n // Generate content using AI with context from job\n const prompt = job.prompt || `Create a comprehensive resource about \"${resourceName}\"`;\n // Extract entity types from annotation body\n const annotationEntityTypes = getEntityTypes({ body: annotation.body });\n\n const generatedContent = await generateResourceFromTopic(\n resourceName,\n job.entityTypes || annotationEntityTypes,\n this.config,\n prompt,\n job.language,\n job.context, // NEW - context from job (passed from modal)\n job.temperature, // NEW - from job\n job.maxTokens // NEW - from job\n );\n\n console.log(`[GenerationWorker] ✅ Generated ${generatedContent.content.length} bytes of content`);\n\n // Update progress: creating\n job.progress = {\n stage: 'generating',\n percentage: 70,\n message: 'Content ready, creating resource...'\n };\n await this.updateJobProgress(job);\n\n // Generate resource ID\n const rId = resourceId(generateUuid());\n\n // Update progress: creating\n job.progress = {\n stage: 'creating',\n percentage: 85,\n message: 'Saving resource...'\n };\n console.log(`[GenerationWorker] 💾 ${job.progress.message}`);\n await this.updateJobProgress(job);\n\n // Save content to RepresentationStore\n const storedRep = await repStore.store(Buffer.from(generatedContent.content), {\n mediaType: 'text/markdown',\n rel: 'original',\n });\n console.log(`[GenerationWorker] ✅ Saved resource representation to filesystem: ${rId}`);\n\n // Emit resource.created event\n await this.eventStore.appendEvent({\n type: 'resource.created',\n resourceId: rId,\n userId: job.userId,\n version: 1,\n payload: {\n name: resourceName,\n format: 'text/markdown',\n contentChecksum: storedRep.checksum,\n creationMethod: CREATION_METHODS.GENERATED,\n entityTypes: job.entityTypes || annotationEntityTypes,\n language: job.language,\n isDraft: true,\n generatedFrom: job.referenceId,\n generationPrompt: undefined, // Could be added if we track the prompt\n },\n });\n console.log(`[GenerationWorker] Emitted resource.created event for ${rId}`);\n\n // Update progress: linking\n job.progress = {\n stage: 'linking',\n percentage: 95,\n message: 'Linking reference...'\n };\n console.log(`[GenerationWorker] 🔗 ${job.progress.message}`);\n await this.updateJobProgress(job);\n\n // Emit annotation.body.updated event to link the annotation to the new resource\n // Build full resource URI for the annotation body\n const newResourceUri = resourceUri(`${this.config.services.backend!.publicURL}/resources/${rId}`);\n\n const operations: BodyOperation[] = [{\n op: 'add',\n item: {\n type: 'SpecificResource',\n source: newResourceUri,\n purpose: 'linking',\n },\n }];\n\n // Extract annotation ID from full URI (format: http://host/annotations/{id})\n const annotationIdSegment = job.referenceId.split('/').pop()!;\n\n await this.eventStore.appendEvent({\n type: 'annotation.body.updated',\n resourceId: job.sourceResourceId,\n userId: job.userId,\n version: 1,\n payload: {\n annotationId: annotationId(annotationIdSegment),\n operations,\n },\n });\n console.log(`[GenerationWorker] ✅ Emitted annotation.body.updated event linking ${job.referenceId} → ${rId}`);\n\n // Set final result\n job.result = {\n resourceId: rId,\n resourceName\n };\n\n job.progress = {\n stage: 'linking',\n percentage: 100,\n message: 'Complete!'\n };\n await this.updateJobProgress(job);\n\n console.log(`[GenerationWorker] ✅ Generation complete: created resource ${rId}`);\n }\n\n /**\n * Update job progress and emit events to Event Store\n * Overrides base class to also emit job progress events\n */\n protected override async updateJobProgress(job: Job): Promise<void> {\n // Call parent to update job queue\n await super.updateJobProgress(job);\n\n // Emit events for generation jobs\n if (job.type !== 'generation') {\n return;\n }\n\n const genJob = job as GenerationJob;\n\n const baseEvent = {\n resourceId: genJob.sourceResourceId,\n userId: genJob.userId,\n version: 1,\n };\n\n // Emit appropriate event based on progress stage\n if (genJob.progress?.stage === 'fetching' && genJob.progress?.percentage === 20) {\n // First progress update - emit job.started\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: genJob.id,\n jobType: genJob.type,\n totalSteps: 5, // fetching, generating, creating, linking, complete\n },\n });\n } else if (genJob.progress?.stage === 'linking' && genJob.progress?.percentage === 100) {\n // Final progress update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: genJob.id,\n jobType: genJob.type,\n resultResourceId: genJob.result?.resourceId,\n annotationUri: annotationUri(`${this.config.services.backend!.publicURL}/annotations/${genJob.referenceId}`),\n },\n });\n } else if (genJob.progress) {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: genJob.id,\n jobType: genJob.type,\n currentStep: genJob.progress.stage,\n percentage: genJob.progress.percentage,\n message: genJob.progress.message,\n },\n });\n }\n }\n}\n","// @semiont/make-meaning - Making meaning from resources\n// Transforms raw resources into meaningful, interconnected knowledge\n\n// Context assembly exports\nexport { ResourceContext } from './resource-context';\nexport type { ListResourcesFilters } from './resource-context';\nexport { AnnotationContext } from './annotation-context';\nexport type { BuildContextOptions } from './annotation-context';\nexport { GraphContext } from './graph-context';\n\n// Detection exports\nexport { AnnotationDetection } from './annotation-detection';\n\n// Re-export match types from @semiont/inference for convenience\nexport type {\n CommentMatch,\n HighlightMatch,\n AssessmentMatch,\n TagMatch,\n} from '@semiont/inference';\n\n// Job workers\nexport { CommentDetectionWorker } from './jobs/workers/comment-detection-worker';\nexport { HighlightDetectionWorker } from './jobs/workers/highlight-detection-worker';\nexport { AssessmentDetectionWorker } from './jobs/workers/assessment-detection-worker';\nexport { TagDetectionWorker } from './jobs/workers/tag-detection-worker';\nexport { ReferenceDetectionWorker } from './jobs/workers/reference-detection-worker';\nexport { GenerationWorker } from './jobs/workers/generation-worker';\n\n// Reasoning exports (future)\n// export { ResourceReasoning } from './resource-reasoning';\n\n// Placeholder for initial build\nexport const PACKAGE_NAME = '@semiont/make-meaning';\nexport const VERSION = 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1
+ {"version":3,"sources":["../src/service.ts","../src/jobs/reference-detection-worker.ts","../src/detection/entity-extractor.ts","../src/jobs/generation-worker.ts","../src/generation/resource-generation.ts","../src/jobs/highlight-detection-worker.ts","../src/jobs/assessment-detection-worker.ts","../src/jobs/comment-detection-worker.ts","../src/jobs/tag-detection-worker.ts","../src/graph/consumer.ts","../src/resource-context.ts","../src/annotation-context.ts","../src/graph-context.ts","../src/annotation-detection.ts","../src/detection/motivation-prompts.ts","../src/detection/motivation-parsers.ts","../src/index.ts"],"sourcesContent":["/**\n * Make-Meaning Service\n *\n * Consolidates all meaning-making infrastructure:\n * - Job queue initialization\n * - Worker instantiation and startup\n * - Graph consumer (event-to-graph synchronization)\n *\n * Provides a clean interface similar to createEventStore():\n * const makeMeaning = await startMakeMeaning(config);\n */\n\nimport * as path from 'path';\nimport { JobQueue } from '@semiont/jobs';\nimport { createEventStore as createEventStoreCore, type EventStore } from '@semiont/event-sourcing';\nimport { FilesystemRepresentationStore, type RepresentationStore } from '@semiont/content';\nimport type { EnvironmentConfig } from '@semiont/core';\nimport { resourceId as makeResourceId } from '@semiont/core';\nimport { getInferenceClient, type InferenceClient } from '@semiont/inference';\nimport { getGraphDatabase, type GraphDatabase } from '@semiont/graph';\nimport { ReferenceDetectionWorker } from './jobs/reference-detection-worker';\nimport { GenerationWorker } from './jobs/generation-worker';\nimport { HighlightDetectionWorker } from './jobs/highlight-detection-worker';\nimport { AssessmentDetectionWorker } from './jobs/assessment-detection-worker';\nimport { CommentDetectionWorker } from './jobs/comment-detection-worker';\nimport { TagDetectionWorker } from './jobs/tag-detection-worker';\nimport { GraphDBConsumer } from './graph/consumer';\n\nexport interface MakeMeaningService {\n jobQueue: JobQueue;\n eventStore: EventStore;\n repStore: RepresentationStore;\n inferenceClient: InferenceClient;\n graphDb: GraphDatabase;\n workers: {\n detection: ReferenceDetectionWorker;\n generation: GenerationWorker;\n highlight: HighlightDetectionWorker;\n assessment: AssessmentDetectionWorker;\n comment: CommentDetectionWorker;\n tag: TagDetectionWorker;\n };\n graphConsumer: GraphDBConsumer;\n stop: () => Promise<void>;\n}\n\nexport async function startMakeMeaning(config: EnvironmentConfig): Promise<MakeMeaningService> {\n console.log('🧠 Starting Make-Meaning service...');\n\n // 1. Validate configuration\n const configuredPath = config.services?.filesystem?.path;\n if (!configuredPath) {\n throw new Error('services.filesystem.path is required for make-meaning service');\n }\n\n const baseUrl = config.services?.backend?.publicURL;\n if (!baseUrl) {\n throw new Error('services.backend.publicURL is required for make-meaning service');\n }\n\n // Resolve basePath to absolute path\n const projectRoot = config._metadata?.projectRoot;\n let basePath: string;\n if (path.isAbsolute(configuredPath)) {\n basePath = configuredPath;\n } else if (projectRoot) {\n basePath = path.resolve(projectRoot, configuredPath);\n } else {\n basePath = path.resolve(configuredPath);\n }\n\n // 2. Initialize job queue\n console.log('💼 Initializing job queue...');\n const jobQueue = new JobQueue({ dataDir: basePath });\n await jobQueue.initialize();\n console.log('✅ Job queue initialized');\n\n // 3. Create shared event store\n console.log('📊 Creating event store connection...');\n const eventStore = createEventStoreCore(basePath, baseUrl);\n\n // 4. Create shared representation store\n console.log('📦 Creating representation store...');\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n console.log('✅ Representation store created');\n\n // 5. Create inference client (shared across all workers)\n console.log('🤖 Creating inference client...');\n const inferenceClient = await getInferenceClient(config);\n console.log('✅ Inference client created');\n\n // 6. Create graph database connection\n console.log('📊 Connecting to graph database...');\n const graphDb = await getGraphDatabase(config);\n console.log('✅ Graph database connected');\n\n // 7. Start graph consumer\n console.log('🔄 Starting graph consumer...');\n const graphConsumer = new GraphDBConsumer(config, eventStore, graphDb);\n await graphConsumer.initialize();\n\n // Subscribe to all existing resources\n const allResourceIds = await eventStore.log.getAllResourceIds();\n console.log(`[GraphDBConsumer] Subscribing to ${allResourceIds.length} resources`);\n for (const resourceId of allResourceIds) {\n await graphConsumer.subscribeToResource(makeResourceId(resourceId as string));\n }\n console.log('✅ Graph consumer started');\n\n // 8. Instantiate workers\n console.log('👷 Creating workers...');\n const workers = {\n detection: new ReferenceDetectionWorker(jobQueue, config, eventStore, inferenceClient),\n generation: new GenerationWorker(jobQueue, config, eventStore, inferenceClient),\n highlight: new HighlightDetectionWorker(jobQueue, config, eventStore, inferenceClient),\n assessment: new AssessmentDetectionWorker(jobQueue, config, eventStore, inferenceClient),\n comment: new CommentDetectionWorker(jobQueue, config, eventStore, inferenceClient),\n tag: new TagDetectionWorker(jobQueue, config, eventStore, inferenceClient),\n };\n\n // 8. Start all workers (non-blocking)\n console.log('🚀 Starting workers...');\n workers.detection.start().catch((error: unknown) => {\n console.error('⚠️ Detection worker stopped:', error);\n });\n workers.generation.start().catch((error: unknown) => {\n console.error('⚠️ Generation worker stopped:', error);\n });\n workers.highlight.start().catch((error: unknown) => {\n console.error('⚠️ Highlight worker stopped:', error);\n });\n workers.assessment.start().catch((error: unknown) => {\n console.error('⚠️ Assessment worker stopped:', error);\n });\n workers.comment.start().catch((error: unknown) => {\n console.error('⚠️ Comment worker stopped:', error);\n });\n workers.tag.start().catch((error: unknown) => {\n console.error('⚠️ Tag worker stopped:', error);\n });\n console.log('✅ All workers started');\n\n console.log('✅ Make-Meaning service started');\n\n return {\n jobQueue,\n eventStore,\n repStore,\n inferenceClient,\n graphDb,\n workers,\n graphConsumer,\n stop: async () => {\n console.log('⏹️ Stopping Make-Meaning service...');\n await Promise.all([\n workers.detection.stop(),\n workers.generation.stop(),\n workers.highlight.stop(),\n workers.assessment.stop(),\n workers.comment.stop(),\n workers.tag.stop(),\n ]);\n await graphConsumer.stop();\n await graphDb.disconnect();\n console.log('✅ Make-Meaning service stopped');\n },\n };\n}\n","/**\n * Reference Detection Worker\n *\n * Processes detection jobs: runs AI inference to find entities in resources\n * and emits reference.created events for each detected entity.\n *\n * This worker is INDEPENDENT of HTTP clients - it just processes jobs and emits events.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, DetectionJob, JobQueue, RunningJob, DetectionParams, DetectionProgress } from '@semiont/jobs';\nimport { ResourceContext } from '..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig } from '@semiont/core';\nimport {\n type components,\n getPrimaryRepresentation,\n decodeRepresentation,\n validateAndCorrectOffsets,\n} from '@semiont/api-client';\nimport { extractEntities } from '../detection/entity-extractor';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport type { InferenceClient } from '@semiont/inference';\n\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport interface DetectedAnnotation {\n annotation: {\n selector: {\n start: number;\n end: number;\n exact: string;\n prefix?: string;\n suffix?: string;\n };\n entityTypes: string[];\n };\n}\n\nexport class ReferenceDetectionWorker extends JobWorker {\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore,\n private inferenceClient: InferenceClient\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'ReferenceDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n await this.processDetectionJob(job as RunningJob<DetectionParams, DetectionProgress>);\n }\n\n /**\n * Detect entity references in resource using AI\n * Self-contained implementation for reference detection\n *\n * Public for testing charset handling - see entity-detection-charset.test.ts\n */\n public async detectReferences(\n resource: ResourceDescriptor,\n entityTypes: string[],\n includeDescriptiveReferences: boolean = false\n ): Promise<DetectedAnnotation[]> {\n console.log(`Detecting entities of types: ${entityTypes.join(', ')}${includeDescriptiveReferences ? ' (including descriptive references)' : ''}`);\n\n const detectedAnnotations: DetectedAnnotation[] = [];\n\n // Get primary representation\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep) return detectedAnnotations;\n\n // Only process text content (check base media type, ignoring charset parameters)\n const mediaType = primaryRep.mediaType;\n const baseMediaType = mediaType?.split(';')[0]?.trim() || '';\n if (baseMediaType === 'text/plain' || baseMediaType === 'text/markdown') {\n // Load content from representation store using content-addressed lookup\n if (!primaryRep.checksum || !primaryRep.mediaType) return detectedAnnotations;\n\n const basePath = this.config.services.filesystem!.path;\n const projectRoot = this.config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const content = decodeRepresentation(contentBuffer, primaryRep.mediaType);\n\n // Use AI to extract entities (with optional anaphoric/cataphoric references)\n const extractedEntities = await extractEntities(content, entityTypes, this.inferenceClient, includeDescriptiveReferences);\n\n // Validate and correct AI's offsets, then extract proper context\n // AI sometimes returns offsets that don't match the actual text position\n for (const entity of extractedEntities) {\n try {\n const validated = validateAndCorrectOffsets(\n content,\n entity.startOffset,\n entity.endOffset,\n entity.exact\n );\n\n const annotation: DetectedAnnotation = {\n annotation: {\n selector: {\n start: validated.start,\n end: validated.end,\n exact: validated.exact,\n prefix: validated.prefix,\n suffix: validated.suffix,\n },\n entityTypes: [entity.entityType],\n },\n };\n detectedAnnotations.push(annotation);\n } catch (error) {\n console.warn(`[ReferenceDetectionWorker] Skipping invalid entity \"${entity.exact}\":`, error);\n // Skip this entity - AI hallucinated text that doesn't exist\n }\n }\n }\n\n return detectedAnnotations;\n }\n\n private async processDetectionJob(job: RunningJob<DetectionParams, DetectionProgress>): Promise<void> {\n console.log(`[ReferenceDetectionWorker] Processing detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n console.log(`[ReferenceDetectionWorker] 🔍 Entity types: ${job.params.entityTypes.join(', ')}`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n let totalFound = 0;\n let totalEmitted = 0;\n let totalErrors = 0;\n\n // Create updated job with initial progress\n let updatedJob: RunningJob<DetectionParams, DetectionProgress> = {\n ...job,\n progress: {\n totalEntityTypes: job.params.entityTypes.length,\n processedEntityTypes: 0,\n entitiesFound: 0,\n entitiesEmitted: 0\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Process each entity type\n for (let i = 0; i < job.params.entityTypes.length; i++) {\n const entityType = job.params.entityTypes[i];\n\n if (!entityType) continue;\n\n console.log(`[ReferenceDetectionWorker] 🤖 [${i + 1}/${job.params.entityTypes.length}] Detecting ${entityType}...`);\n\n // Detect entities using AI (loads content from filesystem internally)\n const detectedAnnotations = await this.detectReferences(resource, [entityType], job.params.includeDescriptiveReferences);\n\n totalFound += detectedAnnotations.length;\n console.log(`[ReferenceDetectionWorker] ✅ Found ${detectedAnnotations.length} ${entityType} entities`);\n\n // Emit events for each detected entity\n // This happens INDEPENDENT of any HTTP client!\n for (let idx = 0; idx < detectedAnnotations.length; idx++) {\n const detected = detectedAnnotations[idx];\n\n if (!detected) {\n console.warn(`[ReferenceDetectionWorker] Skipping undefined entity at index ${idx}`);\n continue;\n }\n\n let referenceId: string;\n try {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n referenceId = generateAnnotationId(backendUrl);\n } catch (error) {\n console.error(`[ReferenceDetectionWorker] Failed to generate annotation ID:`, error);\n throw new Error('Configuration error: Backend publicURL not set');\n }\n\n try {\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId: job.params.resourceId,\n userId: job.metadata.userId,\n version: 1,\n payload: {\n annotation: {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n id: referenceId,\n motivation: 'linking' as const,\n target: {\n source: resourceIdToURI(job.params.resourceId, this.config.services.backend!.publicURL), // Convert to full URI\n selector: [\n {\n type: 'TextPositionSelector',\n start: detected.annotation.selector.start,\n end: detected.annotation.selector.end,\n },\n {\n type: 'TextQuoteSelector',\n exact: detected.annotation.selector.exact,\n ...(detected.annotation.selector.prefix && { prefix: detected.annotation.selector.prefix }),\n ...(detected.annotation.selector.suffix && { suffix: detected.annotation.selector.suffix }),\n },\n ],\n },\n body: (detected.annotation.entityTypes || []).map(et => ({\n type: 'TextualBody' as const,\n value: et,\n purpose: 'tagging' as const,\n })),\n modified: new Date().toISOString(),\n },\n },\n });\n\n totalEmitted++;\n\n if ((idx + 1) % 10 === 0 || idx === detectedAnnotations.length - 1) {\n console.log(`[ReferenceDetectionWorker] 📤 Emitted ${idx + 1}/${detectedAnnotations.length} events for ${entityType}`);\n }\n\n } catch (error) {\n totalErrors++;\n console.error(`[ReferenceDetectionWorker] ❌ Failed to emit event for ${referenceId}:`, error);\n // Continue processing other entities even if one fails\n }\n }\n\n console.log(`[ReferenceDetectionWorker] ✅ Completed ${entityType}: ${detectedAnnotations.length} found, ${detectedAnnotations.length - (totalErrors - (totalFound - totalEmitted))} emitted`);\n\n // Update progress after processing this entity type\n updatedJob = {\n ...updatedJob,\n progress: {\n totalEntityTypes: job.params.entityTypes.length,\n processedEntityTypes: i + 1,\n currentEntityType: entityType,\n entitiesFound: totalFound,\n entitiesEmitted: totalEmitted\n }\n };\n await this.updateJobProgress(updatedJob);\n }\n\n console.log(`[ReferenceDetectionWorker] ✅ Detection complete: ${totalFound} entities found, ${totalEmitted} events emitted, ${totalErrors} errors`);\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'detection') {\n // Type narrowing: job is FailedJob<DetectionParams>\n const detJob = job as DetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: detJob.params.resourceId,\n userId: detJob.metadata.userId,\n version: 1,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n error: 'Entity detection failed. Please try again later.',\n },\n });\n }\n }\n\n /**\n * Update job progress and emit events to Event Store\n * Overrides base class to also emit job progress events\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update job queue\n await super.updateJobProgress(job);\n\n // Emit events for detection jobs\n if (job.metadata.type !== 'detection') {\n return;\n }\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const detJob = job as RunningJob<DetectionParams, DetectionProgress>;\n\n const baseEvent = {\n resourceId: detJob.params.resourceId,\n userId: detJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is the first progress update (job.started)\n const isFirstUpdate = detJob.progress.processedEntityTypes === 0;\n\n // Determine if this is the final update (job.completed)\n const isFinalUpdate =\n detJob.progress.processedEntityTypes === detJob.progress.totalEntityTypes &&\n detJob.progress.totalEntityTypes > 0;\n\n if (isFirstUpdate) {\n // First progress update - emit job.started\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n totalSteps: detJob.params.entityTypes.length,\n },\n });\n } else if (isFinalUpdate) {\n // Final progress update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n foundCount: detJob.progress.entitiesFound,\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n const percentage = Math.round((detJob.progress.processedEntityTypes / detJob.progress.totalEntityTypes) * 100);\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n percentage,\n currentStep: detJob.progress.currentEntityType,\n processedSteps: detJob.progress.processedEntityTypes,\n totalSteps: detJob.progress.totalEntityTypes,\n foundCount: detJob.progress.entitiesFound,\n },\n });\n }\n }\n}\n","import type { InferenceClient } from '@semiont/inference';\n\n/**\n * Entity reference extracted from text\n */\nexport interface ExtractedEntity {\n exact: string; // The actual text span\n entityType: string; // The detected entity type\n startOffset: number; // Character offset where entity starts\n endOffset: number; // Character offset where entity ends\n prefix?: string; // Text immediately before entity (for disambiguation)\n suffix?: string; // Text immediately after entity (for disambiguation)\n}\n\n/**\n * Extract entity references from text using AI\n *\n * @param text - The text to analyze\n * @param entityTypes - Array of entity types to detect (optionally with examples)\n * @param client - Inference client for AI operations\n * @param includeDescriptiveReferences - Include anaphoric/cataphoric references (default: false)\n * @returns Array of extracted entities with their character offsets\n */\nexport async function extractEntities(\n exact: string,\n entityTypes: string[] | { type: string; examples?: string[] }[],\n client: InferenceClient,\n includeDescriptiveReferences: boolean = false\n): Promise<ExtractedEntity[]> {\n console.log('extractEntities called with:', {\n textLength: exact.length,\n entityTypes: Array.isArray(entityTypes) ? entityTypes.map(et => typeof et === 'string' ? et : et.type) : []\n });\n\n // Format entity types for the prompt\n const entityTypesDescription = entityTypes.map(et => {\n if (typeof et === 'string') {\n return et;\n }\n return et.examples && et.examples.length > 0\n ? `${et.type} (examples: ${et.examples.slice(0, 3).join(', ')})`\n : et.type;\n }).join(', ');\n\n // Build prompt with optional support for anaphoric/cataphoric references\n // Anaphora: references that point backward (e.g., \"John arrived. He was tired.\")\n // Cataphora: references that point forward (e.g., \"When she arrived, Mary was surprised.\")\n // When enabled, include substantive descriptive references beyond simple pronouns\n const descriptiveReferenceGuidance = includeDescriptiveReferences\n ? `\nInclude both:\n- Direct mentions (names, proper nouns)\n- Descriptive references (substantive phrases that refer to entities)\n\nFor descriptive references, include:\n- Definite descriptions: \"the Nobel laureate\", \"the tech giant\", \"the former president\"\n- Role-based references: \"the CEO\", \"the physicist\", \"the author\", \"the owner\", \"the contractor\"\n- Epithets with context: \"the Cupertino-based company\", \"the iPhone maker\"\n- References to entities even when identity is unknown or unspecified\n\nDo NOT include:\n- Simple pronouns alone: he, she, it, they, him, her, them\n- Generic determiners alone: this, that, these, those\n- Possessives without substance: his, her, their, its\n\nExamples:\n- For \"Marie Curie\", include \"the Nobel laureate\" and \"the physicist\" but NOT \"she\"\n- For an unknown person, include \"the owner\" or \"the contractor\" (role-based references count even when identity is unspecified)\n`\n : `\nFind direct mentions only (names, proper nouns). Do not include pronouns or descriptive references.\n`;\n\n const prompt = `Identify entity references in the following text. Look for mentions of: ${entityTypesDescription}.\n${descriptiveReferenceGuidance}\nText to analyze:\n\"\"\"\n${exact}\n\"\"\"\n\nReturn ONLY a JSON array of entities found. Each entity should have:\n- exact: the exact text span from the input\n- entityType: one of the provided entity types\n- startOffset: character position where the entity starts (0-indexed)\n- endOffset: character position where the entity ends\n- prefix: up to 32 characters of text immediately before the entity (helps identify correct occurrence)\n- suffix: up to 32 characters of text immediately after the entity (helps identify correct occurrence)\n\nReturn empty array [] if no entities found.\nDo not include markdown formatting or code fences, just the raw JSON array.\n\nExample output:\n[{\"exact\":\"Alice\",\"entityType\":\"Person\",\"startOffset\":0,\"endOffset\":5,\"prefix\":\"\",\"suffix\":\" went to\"},{\"exact\":\"Paris\",\"entityType\":\"Location\",\"startOffset\":20,\"endOffset\":25,\"prefix\":\"went to \",\"suffix\":\" yesterday\"}]`;\n\n console.log('Sending entity extraction request');\n const response = await client.generateTextWithMetadata(\n prompt,\n 4000, // Increased to handle many entities without truncation\n 0.3 // Lower temperature for more consistent extraction\n );\n console.log('Got entity extraction response');\n\n console.log('Entity extraction raw response length:', response.text.length);\n\n try {\n // Clean up response if wrapped in markdown\n let jsonStr = response.text.trim();\n if (jsonStr.startsWith('```')) {\n jsonStr = jsonStr.replace(/^```(?:json)?\\n?/, '').replace(/\\n?```$/, '');\n }\n\n const entities = JSON.parse(jsonStr);\n console.log('Parsed', entities.length, 'entities from response');\n\n // Check if response was truncated - this is an ERROR condition\n if (response.stopReason === 'max_tokens') {\n const errorMsg = `AI response truncated: Found ${entities.length} entities but response hit max_tokens limit. Increase max_tokens or reduce resource size.`;\n console.error(`❌ ${errorMsg}`);\n throw new Error(errorMsg);\n }\n\n // Validate and fix offsets\n return entities.map((entity: any, idx: number) => {\n let startOffset = entity.startOffset;\n let endOffset = entity.endOffset;\n\n console.log(`\\n[Entity ${idx + 1}/${entities.length}]`);\n console.log(` Type: ${entity.entityType}`);\n console.log(` Text: \"${entity.exact}\"`);\n console.log(` Offsets from AI: [${startOffset}, ${endOffset}]`);\n\n // Verify the offsets are correct by checking if the text matches\n const extractedText = exact.substring(startOffset, endOffset);\n\n // If the extracted text doesn't match, find the correct position using context\n if (extractedText !== entity.exact) {\n console.log(` ⚠️ Offset mismatch!`);\n console.log(` Expected: \"${entity.exact}\"`);\n console.log(` Found at AI offsets [${startOffset}:${endOffset}]: \"${extractedText}\"`);\n\n // Show context around the AI-provided offset\n const contextStart = Math.max(0, startOffset - 50);\n const contextEnd = Math.min(exact.length, endOffset + 50);\n const contextBefore = exact.substring(contextStart, startOffset);\n const contextAfter = exact.substring(endOffset, contextEnd);\n console.log(` Context: \"...${contextBefore}[${extractedText}]${contextAfter}...\"`);\n\n console.log(` Searching for exact match in resource...`);\n\n // Try to find using prefix/suffix context if provided\n let found = false;\n if (entity.prefix || entity.suffix) {\n console.log(` Using LLM-provided context for disambiguation:`);\n if (entity.prefix) console.log(` Prefix: \"${entity.prefix}\"`);\n if (entity.suffix) console.log(` Suffix: \"${entity.suffix}\"`);\n\n // Search for all occurrences and find the one with matching context\n let searchPos = 0;\n while ((searchPos = exact.indexOf(entity.exact, searchPos)) !== -1) {\n const candidatePrefix = exact.substring(Math.max(0, searchPos - 32), searchPos);\n const candidateSuffix = exact.substring(\n searchPos + entity.exact.length,\n Math.min(exact.length, searchPos + entity.exact.length + 32)\n );\n\n // Check if context matches (allowing for partial matches at boundaries)\n const prefixMatch = !entity.prefix || candidatePrefix.endsWith(entity.prefix);\n const suffixMatch = !entity.suffix || candidateSuffix.startsWith(entity.suffix);\n\n if (prefixMatch && suffixMatch) {\n console.log(` ✅ Found match using context at offset ${searchPos} (diff: ${searchPos - startOffset})`);\n console.log(` Candidate prefix: \"${candidatePrefix}\"`);\n console.log(` Candidate suffix: \"${candidateSuffix}\"`);\n startOffset = searchPos;\n endOffset = searchPos + entity.exact.length;\n found = true;\n break;\n }\n\n searchPos++;\n }\n\n if (!found) {\n console.log(` ⚠️ No occurrence found with matching context`);\n }\n }\n\n // Fallback to first occurrence if context didn't help\n if (!found) {\n const index = exact.indexOf(entity.exact);\n if (index !== -1) {\n console.log(` ⚠️ Using first occurrence at offset ${index} (diff: ${index - startOffset})`);\n startOffset = index;\n endOffset = index + entity.exact.length;\n } else {\n console.log(` ❌ Cannot find \"${entity.exact}\" anywhere in resource`);\n console.log(` Resource starts with: \"${exact.substring(0, 200)}...\"`);\n // If we still can't find it, skip this entity\n return null;\n }\n }\n } else {\n console.log(` ✅ Offsets correct`);\n }\n\n return {\n exact: entity.exact,\n entityType: entity.entityType,\n startOffset: startOffset,\n endOffset: endOffset,\n prefix: entity.prefix,\n suffix: entity.suffix\n };\n }).filter((entity: ExtractedEntity | null): entity is ExtractedEntity => {\n // Filter out nulls and ensure we have valid offsets\n if (entity === null) {\n console.log('❌ Filtered entity: null');\n return false;\n }\n if (entity.startOffset === undefined || entity.endOffset === undefined) {\n console.log(`❌ Filtered entity \"${entity.exact}\": missing offsets`);\n return false;\n }\n if (entity.startOffset < 0) {\n console.log(`❌ Filtered entity \"${entity.exact}\": negative startOffset (${entity.startOffset})`);\n return false;\n }\n if (entity.endOffset > exact.length) {\n console.log(`❌ Filtered entity \"${entity.exact}\": endOffset (${entity.endOffset}) > text length (${exact.length})`);\n return false;\n }\n\n // Verify the text at the offsets matches\n const extractedText = exact.substring(entity.startOffset, entity.endOffset);\n if (extractedText !== entity.exact) {\n console.log(`❌ Filtered entity \"${entity.exact}\": offset mismatch`);\n console.log(` Expected: \"${entity.exact}\"`);\n console.log(` Got at [${entity.startOffset}:${entity.endOffset}]: \"${extractedText}\"`);\n return false;\n }\n\n console.log(`✅ Accepted entity \"${entity.exact}\" at [${entity.startOffset}:${entity.endOffset}]`);\n return true;\n });\n } catch (error) {\n console.error('Failed to parse entity extraction response:', error);\n return [];\n }\n}","/**\n * Generation Worker\n *\n * Processes generation jobs: runs AI inference to generate new resources\n * and emits resource.created and annotation.body.updated events.\n *\n * This worker is INDEPENDENT of HTTP clients - it just processes jobs and emits events.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, JobQueue, RunningJob, GenerationParams, GenerationProgress } from '@semiont/jobs';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { ResourceContext } from '..';\nimport { generateResourceFromTopic } from '../generation/resource-generation';\nimport {\n getTargetSelector,\n getExactText,\n resourceUri,\n annotationUri,\n} from '@semiont/api-client';\nimport { getEntityTypes } from '@semiont/ontology';\nimport {\n CREATION_METHODS,\n generateUuid,\n type BodyOperation,\n resourceId,\n annotationId,\n} from '@semiont/core';\nimport { EventStore } from '@semiont/event-sourcing';\nimport type { EnvironmentConfig } from '@semiont/core';\nimport type { InferenceClient } from '@semiont/inference';\n\nexport class GenerationWorker extends JobWorker {\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore,\n private inferenceClient: InferenceClient\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'GenerationWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'generation';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'generation') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n await this.processGenerationJob(job as RunningJob<GenerationParams, GenerationProgress>);\n }\n\n private async processGenerationJob(job: RunningJob<GenerationParams, GenerationProgress>): Promise<void> {\n console.log(`[GenerationWorker] Processing generation for reference ${job.params.referenceId} (job: ${job.metadata.id})`);\n\n const basePath = this.config.services.filesystem!.path;\n const projectRoot = this.config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Update progress: fetching\n let updatedJob: RunningJob<GenerationParams, GenerationProgress> = {\n ...job,\n progress: {\n stage: 'fetching',\n percentage: 20,\n message: 'Fetching source resource...'\n }\n };\n console.log(`[GenerationWorker] 📥 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Fetch annotation from view storage\n // TODO: Once AnnotationContext is consolidated, use it here\n const { FilesystemViewStorage } = await import('@semiont/event-sourcing');\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const view = await viewStorage.get(job.params.sourceResourceId);\n if (!view) {\n throw new Error(`Resource ${job.params.sourceResourceId} not found`);\n }\n const projection = view.annotations;\n\n // Construct full annotation URI for comparison\n const expectedAnnotationUri = `${this.config.services.backend!.publicURL}/annotations/${job.params.referenceId}`;\n const annotation = projection.annotations.find((a: any) =>\n a.id === expectedAnnotationUri && a.motivation === 'linking'\n );\n\n if (!annotation) {\n throw new Error(`Annotation ${job.params.referenceId} not found in resource ${job.params.sourceResourceId}`);\n }\n\n const sourceResource = await ResourceContext.getResourceMetadata(job.params.sourceResourceId, this.config);\n if (!sourceResource) {\n throw new Error(`Source resource ${job.params.sourceResourceId} not found`);\n }\n\n // Determine resource name\n const targetSelector = getTargetSelector(annotation.target);\n const resourceName = job.params.title || (targetSelector ? getExactText(targetSelector) : '') || 'New Resource';\n console.log(`[GenerationWorker] Generating resource: \"${resourceName}\"`);\n\n // Verify context is provided (required for generation)\n if (!job.params.context) {\n throw new Error('Generation context is required but was not provided in job');\n }\n console.log(`[GenerationWorker] Using pre-fetched context: ${job.params.context.sourceContext?.before?.length || 0} chars before, ${job.params.context.sourceContext?.selected?.length || 0} chars selected, ${job.params.context.sourceContext?.after?.length || 0} chars after`);\n\n // Update progress: generating (skip fetching context since it's already in job)\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'generating',\n percentage: 40,\n message: 'Creating content with AI...'\n }\n };\n console.log(`[GenerationWorker] 🤖 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Generate content using AI with context from job\n const prompt = job.params.prompt || `Create a comprehensive resource about \"${resourceName}\"`;\n // Extract entity types from annotation body\n const annotationEntityTypes = getEntityTypes({ body: annotation.body });\n\n const generatedContent = await generateResourceFromTopic(\n resourceName,\n job.params.entityTypes || annotationEntityTypes,\n this.inferenceClient,\n prompt,\n job.params.language,\n job.params.context, // NEW - context from job (passed from modal)\n job.params.temperature, // NEW - from job\n job.params.maxTokens // NEW - from job\n );\n\n console.log(`[GenerationWorker] ✅ Generated ${generatedContent.content.length} bytes of content`);\n\n // Update progress: creating\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'generating',\n percentage: 70,\n message: 'Content ready, creating resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Generate resource ID\n const rId = resourceId(generateUuid());\n\n // Update progress: creating\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 85,\n message: 'Saving resource...'\n }\n };\n console.log(`[GenerationWorker] 💾 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Save content to RepresentationStore\n const storedRep = await repStore.store(Buffer.from(generatedContent.content), {\n mediaType: 'text/markdown',\n rel: 'original',\n });\n console.log(`[GenerationWorker] ✅ Saved resource representation to filesystem: ${rId}`);\n\n // Emit resource.created event\n await this.eventStore.appendEvent({\n type: 'resource.created',\n resourceId: rId,\n userId: job.metadata.userId,\n version: 1,\n payload: {\n name: resourceName,\n format: 'text/markdown',\n contentChecksum: storedRep.checksum,\n creationMethod: CREATION_METHODS.GENERATED,\n entityTypes: job.params.entityTypes || annotationEntityTypes,\n language: job.params.language,\n isDraft: true,\n generatedFrom: job.params.referenceId,\n generationPrompt: undefined, // Could be added if we track the prompt\n },\n });\n console.log(`[GenerationWorker] Emitted resource.created event for ${rId}`);\n\n // Update progress: linking\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'linking',\n percentage: 95,\n message: 'Linking reference...',\n resultResourceId: rId // Store for job.completed event\n }\n };\n console.log(`[GenerationWorker] 🔗 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Emit annotation.body.updated event to link the annotation to the new resource\n // Build full resource URI for the annotation body\n const newResourceUri = resourceUri(`${this.config.services.backend!.publicURL}/resources/${rId}`);\n\n const operations: BodyOperation[] = [{\n op: 'add',\n item: {\n type: 'SpecificResource',\n source: newResourceUri,\n purpose: 'linking',\n },\n }];\n\n // Extract annotation ID from full URI (format: http://host/annotations/{id})\n const annotationIdSegment = job.params.referenceId.split('/').pop()!;\n\n await this.eventStore.appendEvent({\n type: 'annotation.body.updated',\n resourceId: job.params.sourceResourceId,\n userId: job.metadata.userId,\n version: 1,\n payload: {\n annotationId: annotationId(annotationIdSegment),\n operations,\n },\n });\n console.log(`[GenerationWorker] ✅ Emitted annotation.body.updated event linking ${job.params.referenceId} → ${rId}`);\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'linking',\n percentage: 100,\n message: 'Complete!',\n resultResourceId: rId // Store for job.completed event\n }\n };\n await this.updateJobProgress(updatedJob);\n\n console.log(`[GenerationWorker] ✅ Generation complete: created resource ${rId}`);\n }\n\n /**\n * Update job progress and emit events to Event Store\n * Overrides base class to also emit job progress events\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update job queue\n await super.updateJobProgress(job);\n\n // Emit events for generation jobs\n if (job.metadata.type !== 'generation') {\n return;\n }\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const genJob = job as RunningJob<GenerationParams, GenerationProgress>;\n\n const baseEvent = {\n resourceId: genJob.params.sourceResourceId,\n userId: genJob.metadata.userId,\n version: 1,\n };\n\n // Emit appropriate event based on progress stage\n if (genJob.progress.stage === 'fetching' && genJob.progress.percentage === 20) {\n // First progress update - emit job.started\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: genJob.metadata.id,\n jobType: genJob.metadata.type,\n totalSteps: 5, // fetching, generating, creating, linking, complete\n },\n });\n } else if (genJob.progress.stage === 'linking' && genJob.progress.percentage === 100) {\n // Final progress update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: genJob.metadata.id,\n jobType: genJob.metadata.type,\n resultResourceId: genJob.progress.resultResourceId,\n annotationUri: annotationUri(`${this.config.services.backend!.publicURL}/annotations/${genJob.params.referenceId}`),\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: genJob.metadata.id,\n jobType: genJob.metadata.type,\n currentStep: genJob.progress.stage,\n percentage: genJob.progress.percentage,\n message: genJob.progress.message,\n },\n });\n }\n }\n}\n","/**\n * Resource Generation Functions\n *\n * Application-specific resource generation logic including:\n * - Markdown resource generation from topics\n * - Resource summary generation\n * - Reference suggestion generation\n * - Language handling and template processing\n */\n\nimport { getLocaleEnglishName } from '@semiont/api-client';\nimport type { GenerationContext } from '@semiont/api-client';\nimport type { InferenceClient } from '@semiont/inference';\n\nfunction getLanguageName(locale: string): string {\n return getLocaleEnglishName(locale) || locale;\n}\n\n/**\n * Generate resource content using inference\n */\nexport async function generateResourceFromTopic(\n topic: string,\n entityTypes: string[],\n client: InferenceClient,\n userPrompt?: string,\n locale?: string,\n context?: GenerationContext,\n temperature?: number,\n maxTokens?: number\n): Promise<{ title: string; content: string }> {\n console.log('generateResourceFromTopic called with:', {\n topic: topic.substring(0, 100),\n entityTypes,\n hasUserPrompt: !!userPrompt,\n locale,\n hasContext: !!context,\n temperature,\n maxTokens\n });\n\n // Use provided values or defaults\n const finalTemperature = temperature ?? 0.7;\n const finalMaxTokens = maxTokens ?? 500;\n\n // Determine language instruction\n const languageInstruction = locale && locale !== 'en'\n ? `\\n\\nIMPORTANT: Write the entire resource in ${getLanguageName(locale)}.`\n : '';\n\n // Build context section if available\n let contextSection = '';\n if (context?.sourceContext) {\n const { before, selected, after } = context.sourceContext;\n contextSection = `\\n\\nSource document context:\n---\n${before ? `...${before}` : ''}\n**[${selected}]**\n${after ? `${after}...` : ''}\n---\n`;\n }\n\n // Simple, direct prompt - just ask for markdown content\n const prompt = `Generate a concise, informative resource about \"${topic}\".\n${entityTypes.length > 0 ? `Focus on these entity types: ${entityTypes.join(', ')}.` : ''}\n${userPrompt ? `Additional context: ${userPrompt}` : ''}${contextSection}${languageInstruction}\n\nRequirements:\n- Start with a clear heading (# Title)\n- Write 2-3 paragraphs of substantive content\n- Be factual and informative\n- Use markdown formatting\n- Return ONLY the markdown content, no JSON, no code fences, no additional wrapper`;\n\n // Simple parser - just use the response directly as markdown\n const parseResponse = (response: string): { title: string; content: string } => {\n // Clean up any markdown code fences if present\n let content = response.trim();\n if (content.startsWith('```markdown') || content.startsWith('```md')) {\n content = content.slice(content.indexOf('\\n') + 1);\n const endIndex = content.lastIndexOf('```');\n if (endIndex !== -1) {\n content = content.slice(0, endIndex);\n }\n } else if (content.startsWith('```')) {\n content = content.slice(3);\n const endIndex = content.lastIndexOf('```');\n if (endIndex !== -1) {\n content = content.slice(0, endIndex);\n }\n }\n\n content = content.trim();\n\n // Title is provided by the caller (topic), not extracted from generated content\n // This matches how it's actually used in generation-worker.ts line 87\n return {\n title: topic,\n content: content\n };\n };\n\n console.log('Sending prompt to inference (length:', prompt.length, 'chars)', 'temp:', finalTemperature, 'maxTokens:', finalMaxTokens);\n const response = await client.generateText(prompt, finalMaxTokens, finalTemperature);\n console.log('Got raw response (length:', response.length, 'chars)');\n\n const result = parseResponse(response);\n console.log('Parsed result:', {\n hasTitle: !!result.title,\n titleLength: result.title?.length,\n hasContent: !!result.content,\n contentLength: result.content?.length\n });\n\n return result;\n}\n\n/**\n * Generate an intelligent summary for a resource\n */\nexport async function generateResourceSummary(\n resourceName: string,\n content: string,\n entityTypes: string[],\n client: InferenceClient\n): Promise<string> {\n // Truncate content if too long\n const truncatedContent = content.length > 2000\n ? content.substring(0, 2000) + '...'\n : content;\n\n const prompt = `Create a brief, intelligent summary of this resource titled \"${resourceName}\".\n${entityTypes.length > 0 ? `Key entity types: ${entityTypes.join(', ')}` : ''}\n\nResource content:\n${truncatedContent}\n\nWrite a 2-3 sentence summary that captures the key points and would help someone understand what this resource contains.`;\n\n return await client.generateText(prompt, 150, 0.5);\n}\n\n/**\n * Generate smart suggestions for a reference\n */\nexport async function generateReferenceSuggestions(\n referenceTitle: string,\n client: InferenceClient,\n entityType?: string,\n currentContent?: string\n): Promise<string[] | null> {\n const prompt = `For a reference titled \"${referenceTitle}\"${entityType ? ` (type: ${entityType})` : ''}${currentContent ? ` with current stub: \"${currentContent}\"` : ''}, suggest 3 specific, actionable next steps or related topics to explore.\n\nFormat as a simple list, one suggestion per line.`;\n\n const response = await client.generateText(prompt, 200, 0.8);\n if (!response) {\n return null;\n }\n\n // Parse into array of suggestions\n return response\n .split('\\n')\n .map(line => line.replace(/^[-*•]\\s*/, '').trim())\n .filter(line => line.length > 0)\n .slice(0, 3);\n}\n","/**\n * Highlight Detection Worker\n *\n * Processes highlight-detection jobs: runs AI inference to find passages\n * that should be highlighted and creates highlight annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, HighlightDetectionJob, JobQueue, RunningJob, HighlightDetectionParams, HighlightDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { HighlightMatch } from '../detection/motivation-parsers';\nimport type { InferenceClient } from '@semiont/inference';\n\nexport class HighlightDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore,\n private inferenceClient: InferenceClient\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'HighlightDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'highlight-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'highlight-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processHighlightDetectionJob(job as RunningJob<HighlightDetectionParams, HighlightDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'highlight-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const hlJob = job as RunningJob<HighlightDetectionParams, HighlightDetectionProgress>;\n\n const baseEvent = {\n resourceId: hlJob.params.resourceId,\n userId: hlJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = hlJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n progress: hlJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'highlight-detection') {\n const hlJob = job as HighlightDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: hlJob.params.resourceId,\n userId: hlJob.metadata.userId,\n version: 1,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n error: 'Highlight detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processHighlightDetectionJob(job: RunningJob<HighlightDetectionParams, HighlightDetectionProgress>): Promise<void> {\n console.log(`[HighlightDetectionWorker] Processing highlight detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n let updatedJob: RunningJob<HighlightDetectionParams, HighlightDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Use AI to detect highlights\n const highlights = await AnnotationDetection.detectHighlights(\n job.params.resourceId,\n this.config,\n this.inferenceClient,\n job.params.instructions,\n job.params.density\n );\n\n console.log(`[HighlightDetectionWorker] Found ${highlights.length} highlights to create`);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${highlights.length} annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Create annotations for each highlight\n let created = 0;\n for (const highlight of highlights) {\n try {\n await this.createHighlightAnnotation(job.params.resourceId, job.metadata.userId, highlight);\n created++;\n } catch (error) {\n console.error(`[HighlightDetectionWorker] Failed to create highlight:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} highlights`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[HighlightDetectionWorker] ✅ Created ${created}/${highlights.length} highlights`);\n }\n\n private async createHighlightAnnotation(\n resourceId: ResourceId,\n creatorUserId: string,\n highlight: HighlightMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) throw new Error('Backend publicURL not configured');\n\n const annotationId = generateAnnotationId(backendUrl);\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n\n // Create W3C annotation with motivation: highlighting\n // Use both TextPositionSelector and TextQuoteSelector (with prefix/suffix for fuzzy anchoring)\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n 'id': annotationId,\n 'motivation': 'highlighting' as const,\n 'creator': userId(creatorUserId),\n 'created': new Date().toISOString(),\n 'target': {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: highlight.start,\n end: highlight.end,\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: highlight.exact,\n ...(highlight.prefix && { prefix: highlight.prefix }),\n ...(highlight.suffix && { suffix: highlight.suffix }),\n },\n ]\n },\n 'body': [] // Empty body for highlights\n };\n\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(creatorUserId),\n version: 1,\n payload: { annotation }\n });\n }\n}\n","/**\n * Assessment Detection Worker\n *\n * Processes assessment-detection jobs: runs AI inference to assess/evaluate\n * passages in the text and creates assessment annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, AssessmentDetectionJob, JobQueue, RunningJob, AssessmentDetectionParams, AssessmentDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { AssessmentMatch } from '../detection/motivation-parsers';\nimport type { InferenceClient } from '@semiont/inference';\n\nexport class AssessmentDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore,\n private inferenceClient: InferenceClient\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'AssessmentDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'assessment-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'assessment-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processAssessmentDetectionJob(job as RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'assessment-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const assJob = job as RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress>;\n\n const baseEvent = {\n resourceId: assJob.params.resourceId,\n userId: assJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = assJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: assJob.metadata.id,\n jobType: assJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: assJob.metadata.id,\n jobType: assJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: assJob.metadata.id,\n jobType: assJob.metadata.type,\n progress: assJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'assessment-detection') {\n const aJob = job as AssessmentDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: aJob.params.resourceId,\n userId: aJob.metadata.userId,\n version: 1,\n payload: {\n jobId: aJob.metadata.id,\n jobType: aJob.metadata.type,\n error: 'Assessment detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processAssessmentDetectionJob(job: RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress>): Promise<void> {\n console.log(`[AssessmentDetectionWorker] Processing assessment detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n let updatedJob: RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Use AI to detect assessments\n const assessments = await AnnotationDetection.detectAssessments(\n job.params.resourceId,\n this.config,\n this.inferenceClient,\n job.params.instructions,\n job.params.tone,\n job.params.density\n );\n\n console.log(`[AssessmentDetectionWorker] Found ${assessments.length} assessments to create`);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${assessments.length} annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Create annotations for each assessment\n let created = 0;\n for (const assessment of assessments) {\n try {\n await this.createAssessmentAnnotation(job.params.resourceId, job.metadata.userId, assessment);\n created++;\n } catch (error) {\n console.error(`[AssessmentDetectionWorker] Failed to create assessment:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} assessments`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[AssessmentDetectionWorker] ✅ Created ${created}/${assessments.length} assessments`);\n }\n\n private async createAssessmentAnnotation(\n resourceId: ResourceId,\n creatorUserId: string,\n assessment: AssessmentMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) throw new Error('Backend publicURL not configured');\n\n const annotationId = generateAnnotationId(backendUrl);\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n\n // Create W3C annotation with motivation: assessing\n // Use both TextPositionSelector and TextQuoteSelector (with prefix/suffix for fuzzy anchoring)\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n 'id': annotationId,\n 'motivation': 'assessing' as const,\n 'creator': userId(creatorUserId),\n 'created': new Date().toISOString(),\n 'target': {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: assessment.start,\n end: assessment.end,\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: assessment.exact,\n ...(assessment.prefix && { prefix: assessment.prefix }),\n ...(assessment.suffix && { suffix: assessment.suffix }),\n },\n ]\n },\n 'body': {\n type: 'TextualBody' as const,\n value: assessment.assessment,\n format: 'text/plain'\n }\n };\n\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(creatorUserId),\n version: 1,\n payload: { annotation }\n });\n }\n}\n","/**\n * Comment Detection Worker\n *\n * Processes comment-detection jobs: runs AI inference to identify passages\n * that would benefit from explanatory comments and creates comment annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, CommentDetectionJob, JobQueue, RunningJob, CommentDetectionParams, CommentDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { CommentMatch } from '../detection/motivation-parsers';\nimport type { InferenceClient } from '@semiont/inference';\n\nexport class CommentDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore,\n private inferenceClient: InferenceClient\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'CommentDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'comment-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'comment-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processCommentDetectionJob(job as RunningJob<CommentDetectionParams, CommentDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'comment-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const cdJob = job as RunningJob<CommentDetectionParams, CommentDetectionProgress>;\n\n const baseEvent = {\n resourceId: cdJob.params.resourceId,\n userId: cdJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = cdJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n progress: cdJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'comment-detection') {\n const cdJob = job as CommentDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: cdJob.params.resourceId,\n userId: cdJob.metadata.userId,\n version: 1,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n error: 'Comment detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processCommentDetectionJob(job: RunningJob<CommentDetectionParams, CommentDetectionProgress>): Promise<void> {\n console.log(`[CommentDetectionWorker] Processing comment detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n let updatedJob: RunningJob<CommentDetectionParams, CommentDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text and generating comments...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Use AI to detect passages needing comments\n const comments = await AnnotationDetection.detectComments(\n job.params.resourceId,\n this.config,\n this.inferenceClient,\n job.params.instructions,\n job.params.tone,\n job.params.density\n );\n\n console.log(`[CommentDetectionWorker] Found ${comments.length} comments to create`);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${comments.length} annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Create annotations for each comment\n let created = 0;\n for (const comment of comments) {\n try {\n await this.createCommentAnnotation(job.params.resourceId, job.metadata.userId, comment);\n created++;\n } catch (error) {\n console.error(`[CommentDetectionWorker] Failed to create comment:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} comments`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[CommentDetectionWorker] ✅ Created ${created}/${comments.length} comments`);\n }\n\n private async createCommentAnnotation(\n resourceId: ResourceId,\n userId_: string,\n comment: CommentMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n const annotationId = generateAnnotationId(backendUrl);\n\n // Create W3C-compliant annotation with motivation: \"commenting\"\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n type: 'Annotation' as const,\n id: annotationId,\n motivation: 'commenting' as const,\n target: {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: comment.start,\n end: comment.end\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: comment.exact,\n prefix: comment.prefix || '',\n suffix: comment.suffix || ''\n }\n ]\n },\n body: [\n {\n type: 'TextualBody' as const,\n value: comment.comment,\n purpose: 'commenting' as const,\n format: 'text/plain',\n language: 'en'\n }\n ]\n };\n\n // Append annotation.added event to Event Store\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(userId_),\n version: 1,\n payload: {\n annotation\n }\n });\n\n console.log(`[CommentDetectionWorker] Created comment annotation ${annotationId} for \"${comment.exact.substring(0, 50)}...\"`);\n }\n}\n","/**\n * Tag Detection Worker\n *\n * Processes tag-detection jobs: runs AI inference to identify passages\n * serving specific structural roles (IRAC, IMRAD, Toulmin, etc.) and\n * creates tag annotations with dual-body structure.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, TagDetectionJob, JobQueue, RunningJob, TagDetectionParams, TagDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport { getTagSchema } from '@semiont/ontology';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { TagMatch } from '../detection/motivation-parsers';\nimport type { InferenceClient } from '@semiont/inference';\n\nexport class TagDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore,\n private inferenceClient: InferenceClient\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'TagDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'tag-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'tag-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processTagDetectionJob(job as RunningJob<TagDetectionParams, TagDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'tag-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const tdJob = job as RunningJob<TagDetectionParams, TagDetectionProgress>;\n\n const baseEvent = {\n resourceId: tdJob.params.resourceId,\n userId: tdJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = tdJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n progress: tdJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'tag-detection') {\n const tdJob = job as TagDetectionJob;\n\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: tdJob.params.resourceId,\n userId: tdJob.metadata.userId,\n version: 1,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n error: 'Tag detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processTagDetectionJob(job: RunningJob<TagDetectionParams, TagDetectionProgress>): Promise<void> {\n console.log(`[TagDetectionWorker] Processing tag detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Validate schema\n const schema = getTagSchema(job.params.schemaId);\n if (!schema) {\n throw new Error(`Invalid tag schema: ${job.params.schemaId}`);\n }\n\n // Validate categories\n for (const category of job.params.categories) {\n if (!schema.tags.some(t => t.name === category)) {\n throw new Error(`Invalid category \"${category}\" for schema ${job.params.schemaId}`);\n }\n }\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started\n let updatedJob: RunningJob<TagDetectionParams, TagDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n processedCategories: 0,\n totalCategories: job.params.categories.length,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Process each category separately\n const allTags: TagMatch[] = [];\n const byCategory: Record<string, number> = {};\n\n for (let i = 0; i < job.params.categories.length; i++) {\n const category = job.params.categories[i]!; // Safe: i < length check guarantees element exists\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 10 + Math.floor((i / job.params.categories.length) * 50),\n currentCategory: category,\n processedCategories: i + 1,\n totalCategories: job.params.categories.length,\n message: `Analyzing ${category}...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Detect tags for this category\n const tags = await AnnotationDetection.detectTags(\n job.params.resourceId,\n this.config,\n this.inferenceClient,\n job.params.schemaId,\n category\n );\n console.log(`[TagDetectionWorker] Found ${tags.length} tags for category \"${category}\"`);\n\n allTags.push(...tags);\n byCategory[category] = tags.length;\n }\n\n // Create annotations\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n processedCategories: job.params.categories.length,\n totalCategories: job.params.categories.length,\n message: `Creating ${allTags.length} tag annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n let created = 0;\n for (const tag of allTags) {\n try {\n await this.createTagAnnotation(job.params.resourceId, job.metadata.userId, job.params.schemaId, tag);\n created++;\n } catch (error) {\n console.error(`[TagDetectionWorker] Failed to create tag:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n processedCategories: job.params.categories.length,\n totalCategories: job.params.categories.length,\n message: `Complete! Created ${created} tags`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[TagDetectionWorker] ✅ Created ${created}/${allTags.length} tags across ${job.params.categories.length} categories`);\n }\n\n private async createTagAnnotation(\n resourceId: ResourceId,\n userId_: string,\n schemaId: string,\n tag: TagMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n const annotationId = generateAnnotationId(backendUrl);\n\n // Create W3C-compliant annotation with dual-body structure:\n // 1. purpose: \"tagging\" with category value\n // 2. purpose: \"classifying\" with schema ID\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n type: 'Annotation' as const,\n id: annotationId,\n motivation: 'tagging' as const,\n target: {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: tag.start,\n end: tag.end\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: tag.exact,\n prefix: tag.prefix || '',\n suffix: tag.suffix || ''\n }\n ]\n },\n body: [\n {\n type: 'TextualBody' as const,\n value: tag.category,\n purpose: 'tagging' as const,\n format: 'text/plain',\n language: 'en'\n },\n {\n type: 'TextualBody' as const,\n value: schemaId,\n purpose: 'classifying' as const,\n format: 'text/plain'\n }\n ]\n };\n\n // Append annotation.added event to Event Store\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(userId_),\n version: 1,\n payload: {\n annotation\n }\n });\n\n console.log(`[TagDetectionWorker] Created tag annotation ${annotationId} for \"${tag.category}\": \"${tag.exact.substring(0, 50)}...\"`);\n }\n}\n","/**\n * GraphDB Consumer\n * Subscribes to resource events and updates GraphDB accordingly\n *\n * Makes GraphDB a projection of Event Store events (single source of truth)\n */\n\nimport { EventQuery, type EventStore } from '@semiont/event-sourcing';\nimport { didToAgent } from '@semiont/core';\nimport type { GraphDatabase } from '@semiont/graph';\nimport type { components } from '@semiont/api-client';\nimport type { ResourceEvent, StoredEvent, EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { resourceId as makeResourceId, findBodyItem } from '@semiont/core';\nimport { toResourceUri, toAnnotationUri } from '@semiont/event-sourcing';\nimport { resourceUri } from '@semiont/api-client';\n\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport class GraphDBConsumer {\n private subscriptions: Map<string, any> = new Map();\n private _globalSubscription: any = null; // Subscription to system-level events (kept for cleanup)\n private processing: Map<string, Promise<void>> = new Map();\n private lastProcessed: Map<string, number> = new Map();\n\n constructor(\n private config: EnvironmentConfig,\n private eventStore: EventStore,\n private graphDb: GraphDatabase\n ) {}\n\n async initialize() {\n console.log('[GraphDBConsumer] Initialized');\n // Subscribe to global system-level events\n await this.subscribeToGlobalEvents();\n }\n\n /**\n * Subscribe to global system-level events (no resourceId)\n * This allows the consumer to react to events like entitytype.added\n */\n private async subscribeToGlobalEvents() {\n this._globalSubscription = this.eventStore.bus.subscriptions.subscribeGlobal(async (storedEvent: StoredEvent) => {\n console.log(`[GraphDBConsumer] Received global event: ${storedEvent.event.type}`);\n await this.processEvent(storedEvent);\n });\n\n console.log('[GraphDBConsumer] Subscribed to global system events');\n }\n\n private ensureInitialized(): GraphDatabase {\n return this.graphDb;\n }\n\n /**\n * Subscribe to events for a resource\n * Apply each event to GraphDB\n */\n async subscribeToResource(resourceId: ResourceId) {\n this.ensureInitialized();\n\n // Convert plain ID to full URI for subscription (EventSubscriptions uses ResourceUri branded type)\n const publicURL = this.config.services.backend!.publicURL;\n const rUri = resourceUri(`${publicURL}/resources/${resourceId}`);\n\n const subscription = this.eventStore.bus.subscriptions.subscribe(rUri, async (storedEvent: StoredEvent) => {\n await this.processEvent(storedEvent);\n });\n\n this.subscriptions.set(resourceId, subscription);\n console.log(`[GraphDBConsumer] Subscribed to ${resourceId}`);\n }\n\n /**\n * Stop the consumer and unsubscribe from all events\n */\n async stop() {\n console.log('[GraphDBConsumer] Stopping...');\n\n // Unsubscribe from all resource subscriptions\n for (const subscription of this.subscriptions.values()) {\n if (subscription && typeof subscription.unsubscribe === 'function') {\n subscription.unsubscribe();\n }\n }\n this.subscriptions.clear();\n\n // Unsubscribe from global subscription\n if (this._globalSubscription && typeof this._globalSubscription.unsubscribe === 'function') {\n this._globalSubscription.unsubscribe();\n }\n this._globalSubscription = null;\n\n console.log('[GraphDBConsumer] Stopped');\n }\n\n /**\n * Process event with ordering guarantee (sequential per resource)\n */\n protected async processEvent(storedEvent: StoredEvent): Promise<void> {\n const { resourceId } = storedEvent.event;\n\n // ⚠️ BRITTLE: System-level events (entitytype.added) have no resourceId\n // Process these immediately without ordering guarantees\n if (!resourceId) {\n await this.applyEventToGraph(storedEvent);\n return;\n }\n\n // Wait for previous event on this resource to complete\n const previousProcessing = this.processing.get(resourceId);\n if (previousProcessing) {\n await previousProcessing;\n }\n\n // Create new processing promise\n const processingPromise = this.applyEventToGraph(storedEvent);\n this.processing.set(resourceId, processingPromise);\n\n try {\n await processingPromise;\n this.lastProcessed.set(resourceId, storedEvent.metadata.sequenceNumber);\n } catch (error) {\n console.error(`[GraphDBConsumer] Failed to process event:`, error);\n throw error;\n } finally {\n this.processing.delete(resourceId);\n }\n }\n\n /**\n * Apply event to GraphDB\n */\n protected async applyEventToGraph(storedEvent: StoredEvent): Promise<void> {\n const graphDb = this.ensureInitialized();\n const event = storedEvent.event;\n\n console.log(`[GraphDBConsumer] Applying ${event.type} to GraphDB (seq=${storedEvent.metadata.sequenceNumber})`);\n\n switch (event.type) {\n case 'resource.created': {\n if (!event.resourceId) throw new Error('resource.created requires resourceId');\n const resourceUri = toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId);\n const resource: ResourceDescriptor = {\n '@context': 'https://schema.org/',\n '@id': resourceUri,\n name: event.payload.name,\n entityTypes: event.payload.entityTypes || [],\n representations: [{\n mediaType: event.payload.format,\n checksum: event.payload.contentChecksum,\n rel: 'original',\n }],\n archived: false,\n dateCreated: new Date().toISOString(),\n wasAttributedTo: didToAgent(event.userId),\n creationMethod: 'api',\n };\n console.log(`[GraphDBConsumer] Creating resource in graph: ${resourceUri}`);\n await graphDb.createResource(resource);\n console.log(`[GraphDBConsumer] ✅ Resource created in graph: ${resourceUri}`);\n break;\n }\n\n case 'resource.cloned': {\n if (!event.resourceId) throw new Error('resource.cloned requires resourceId');\n const resourceUri = toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId);\n const resource: ResourceDescriptor = {\n '@context': 'https://schema.org/',\n '@id': resourceUri,\n name: event.payload.name,\n entityTypes: event.payload.entityTypes || [],\n representations: [{\n mediaType: event.payload.format,\n checksum: event.payload.contentChecksum,\n rel: 'original',\n }],\n archived: false,\n dateCreated: new Date().toISOString(),\n wasAttributedTo: didToAgent(event.userId),\n creationMethod: 'clone',\n };\n console.log(`[GraphDBConsumer] Creating cloned resource in graph: ${resourceUri}`);\n await graphDb.createResource(resource);\n console.log(`[GraphDBConsumer] ✅ Cloned resource created in graph: ${resourceUri}`);\n break;\n }\n\n case 'resource.archived':\n if (!event.resourceId) throw new Error('resource.archived requires resourceId');\n await graphDb.updateResource(toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId), {\n archived: true,\n });\n break;\n\n case 'resource.unarchived':\n if (!event.resourceId) throw new Error('resource.unarchived requires resourceId');\n await graphDb.updateResource(toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId), {\n archived: false,\n });\n break;\n\n case 'annotation.added':\n console.log(`[GraphDBConsumer] 🔍 ENTERED annotation.added case block`);\n console.log(`[GraphDBConsumer] Annotation ID: ${event.payload.annotation.id}`);\n // Event payload contains Omit<Annotation, 'creator' | 'created'>\n // Add creator from event metadata (created not needed for graph)\n await graphDb.createAnnotation({\n ...event.payload.annotation,\n creator: didToAgent(event.userId),\n });\n console.log(`[GraphDBConsumer] ✅ Annotation created in graph: ${event.payload.annotation.id}`);\n break;\n\n case 'annotation.removed':\n await graphDb.deleteAnnotation(toAnnotationUri({ baseUrl: this.config.services.backend!.publicURL }, event.payload.annotationId));\n break;\n\n case 'annotation.body.updated':\n console.log(`[GraphDBConsumer] 🔍 ENTERED annotation.body.updated case block`);\n console.log(`[GraphDBConsumer] Event payload:`, JSON.stringify(event.payload));\n // Apply fine-grained body operations\n try {\n console.log(`[GraphDBConsumer] Creating annotation URI for: ${event.payload.annotationId}`);\n const annotationUri = toAnnotationUri({ baseUrl: this.config.services.backend!.publicURL }, event.payload.annotationId);\n console.log(`[GraphDBConsumer] ✅ Annotation URI created: ${annotationUri}`);\n console.log(`[GraphDBConsumer] Processing annotation.body.updated for ${annotationUri}`);\n console.log(`[GraphDBConsumer] Operations:`, JSON.stringify(event.payload.operations));\n\n // Get current annotation from graph\n const currentAnnotation = await graphDb.getAnnotation(annotationUri);\n console.log(`[GraphDBConsumer] Current annotation in graph:`, currentAnnotation ? 'FOUND' : 'NOT FOUND');\n\n if (currentAnnotation) {\n console.log(`[GraphDBConsumer] Current body:`, JSON.stringify(currentAnnotation.body));\n\n // Ensure body is an array\n let bodyArray = Array.isArray(currentAnnotation.body)\n ? [...currentAnnotation.body]\n : currentAnnotation.body\n ? [currentAnnotation.body]\n : [];\n\n // Apply each operation\n for (const op of event.payload.operations) {\n console.log(`[GraphDBConsumer] Applying operation:`, JSON.stringify(op));\n if (op.op === 'add') {\n // Add item (idempotent - don't add if already exists)\n const exists = findBodyItem(bodyArray, op.item) !== -1;\n if (!exists) {\n bodyArray.push(op.item);\n console.log(`[GraphDBConsumer] Added item to body`);\n } else {\n console.log(`[GraphDBConsumer] Item already exists, skipping`);\n }\n } else if (op.op === 'remove') {\n // Remove item\n const index = findBodyItem(bodyArray, op.item);\n if (index !== -1) {\n bodyArray.splice(index, 1);\n console.log(`[GraphDBConsumer] Removed item from body`);\n }\n } else if (op.op === 'replace') {\n // Replace item\n const index = findBodyItem(bodyArray, op.oldItem);\n if (index !== -1) {\n bodyArray[index] = op.newItem;\n console.log(`[GraphDBConsumer] Replaced item in body`);\n }\n }\n }\n\n console.log(`[GraphDBConsumer] New body array:`, JSON.stringify(bodyArray));\n console.log(`[GraphDBConsumer] Calling updateAnnotation...`);\n\n // Update annotation with new body\n await graphDb.updateAnnotation(annotationUri, {\n body: bodyArray,\n } as Partial<Annotation>);\n\n console.log(`[GraphDBConsumer] ✅ updateAnnotation completed successfully`);\n } else {\n console.log(`[GraphDBConsumer] ⚠️ Annotation not found in graph, skipping update`);\n }\n } catch (error) {\n // If annotation doesn't exist in graph (e.g., created before consumer started),\n // log warning but don't fail - event store is source of truth\n console.error(`[GraphDBConsumer] ❌ ERROR in annotation.body.updated handler`);\n console.error(`[GraphDBConsumer] Annotation ID: ${event.payload.annotationId}`);\n console.error(`[GraphDBConsumer] Error:`, error);\n console.error(`[GraphDBConsumer] Error stack:`, error instanceof Error ? error.stack : 'N/A');\n }\n break;\n\n case 'entitytag.added':\n if (!event.resourceId) throw new Error('entitytag.added requires resourceId');\n const doc = await graphDb.getResource(toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId));\n if (doc) {\n await graphDb.updateResource(toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId), {\n entityTypes: [...(doc.entityTypes || []), event.payload.entityType],\n });\n }\n break;\n\n case 'entitytag.removed':\n if (!event.resourceId) throw new Error('entitytag.removed requires resourceId');\n const doc2 = await graphDb.getResource(toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId));\n if (doc2) {\n await graphDb.updateResource(toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, event.resourceId), {\n entityTypes: (doc2.entityTypes || []).filter(t => t !== event.payload.entityType),\n });\n }\n break;\n\n case 'entitytype.added':\n // ⚠️ BRITTLE: Event routing depends on absence of resourceId\n // This handler is called for system-level events (global entity type collection)\n // TODO: Design cleaner event routing with explicit projection targets\n await graphDb.addEntityType(event.payload.entityType);\n break;\n\n default:\n console.warn(`[GraphDBConsumer] Unknown event type: ${(event as ResourceEvent).type}`);\n }\n }\n\n /**\n * Rebuild entire resource from events\n * Useful for recovery or initial sync\n */\n async rebuildResource(resourceId: ResourceId): Promise<void> {\n const graphDb = this.ensureInitialized();\n console.log(`[GraphDBConsumer] Rebuilding resource ${resourceId} from events`);\n\n // Delete existing data\n try {\n await graphDb.deleteResource(toResourceUri({ baseUrl: this.config.services.backend!.publicURL }, makeResourceId(resourceId)));\n } catch (error) {\n // Resource might not exist yet\n console.log(`[GraphDBConsumer] No existing resource to delete: ${resourceId}`);\n }\n\n // Replay all events\n const query = new EventQuery(this.eventStore.log.storage);\n const events = await query.getResourceEvents(resourceId);\n\n for (const storedEvent of events) {\n await this.applyEventToGraph(storedEvent);\n }\n\n console.log(`[GraphDBConsumer] Rebuilt ${resourceId} from ${events.length} events`);\n }\n\n /**\n * Rebuild entire GraphDB from all events\n * Uses two-pass approach to ensure all resources exist before creating REFERENCES edges\n */\n async rebuildAll(): Promise<void> {\n const graphDb = this.ensureInitialized();\n console.log('[GraphDBConsumer] Rebuilding entire GraphDB from events...');\n console.log('[GraphDBConsumer] Using two-pass approach: nodes first, then edges\\n');\n\n // Clear database\n await graphDb.clearDatabase();\n\n // Get all resource IDs by scanning event shards\n const query = new EventQuery(this.eventStore.log.storage);\n const allResourceIds = await this.eventStore.log.getAllResourceIds();\n\n console.log(`[GraphDBConsumer] Found ${allResourceIds.length} resources to rebuild`);\n\n // PASS 1: Create all nodes (resources and annotations)\n // Skip annotation.body.updated events to avoid creating REFERENCES edges\n console.log('\\n[GraphDBConsumer] === PASS 1: Creating all nodes (resources + annotations) ===');\n for (const resourceId of allResourceIds) {\n const events = await query.getResourceEvents(makeResourceId(resourceId as string));\n\n for (const storedEvent of events) {\n // Skip annotation.body.updated - we'll process these in pass 2\n if (storedEvent.event.type === 'annotation.body.updated') {\n continue;\n }\n await this.applyEventToGraph(storedEvent);\n }\n }\n console.log('[GraphDBConsumer] ✅ Pass 1 complete - all nodes created\\n');\n\n // PASS 2: Create all edges (REFERENCES relationships)\n // Process ONLY annotation.body.updated events\n console.log('[GraphDBConsumer] === PASS 2: Creating all REFERENCES edges ===');\n for (const resourceId of allResourceIds) {\n const events = await query.getResourceEvents(makeResourceId(resourceId as string));\n\n for (const storedEvent of events) {\n // Process ONLY annotation.body.updated events\n if (storedEvent.event.type === 'annotation.body.updated') {\n await this.applyEventToGraph(storedEvent);\n }\n }\n }\n console.log('[GraphDBConsumer] ✅ Pass 2 complete - all edges created\\n');\n\n console.log('[GraphDBConsumer] Rebuild complete');\n }\n\n /**\n * Get consumer health metrics\n */\n getHealthMetrics(): {\n subscriptions: number;\n lastProcessed: Record<string, number>;\n processing: string[];\n } {\n return {\n subscriptions: this.subscriptions.size,\n lastProcessed: Object.fromEntries(this.lastProcessed),\n processing: Array.from(this.processing.keys()),\n };\n }\n\n /**\n * Unsubscribe from resource\n */\n async unsubscribeFromResource(resourceId: ResourceId): Promise<void> {\n const subscription = this.subscriptions.get(resourceId);\n if (subscription) {\n subscription.unsubscribe();\n this.subscriptions.delete(resourceId);\n console.log(`[GraphDBConsumer] Unsubscribed from ${resourceId}`);\n }\n }\n\n /**\n * Unsubscribe from all resources\n */\n async unsubscribeAll(): Promise<void> {\n for (const [_resourceId, subscription] of this.subscriptions) {\n subscription.unsubscribe();\n }\n this.subscriptions.clear();\n console.log('[GraphDBConsumer] Unsubscribed from all resources');\n }\n\n /**\n * Shutdown consumer\n */\n async shutdown(): Promise<void> {\n await this.unsubscribeAll();\n\n // Unsubscribe from global events\n if (this._globalSubscription) {\n this._globalSubscription.unsubscribe();\n this._globalSubscription = null;\n console.log('[GraphDBConsumer] Unsubscribed from global events');\n }\n\n // GraphDB disconnect is handled by MakeMeaningService.stop()\n console.log('[GraphDBConsumer] Shut down');\n }\n}","/**\n * Resource Context\n *\n * Assembles resource context from view storage and content store\n * Does NOT touch the graph - graph queries go through GraphContext\n */\n\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport type { components } from '@semiont/api-client';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport interface ListResourcesFilters {\n search?: string;\n archived?: boolean;\n}\n\nexport class ResourceContext {\n /**\n * Get resource metadata from view storage\n */\n static async getResourceMetadata(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceDescriptor | null> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const view = await viewStorage.get(resourceId);\n if (!view) {\n return null;\n }\n\n return view.resource;\n }\n\n /**\n * List all resources by scanning view storage\n */\n static async listResources(filters: ListResourcesFilters | undefined, config: EnvironmentConfig): Promise<ResourceDescriptor[]> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const allViews = await viewStorage.getAll();\n const resources: ResourceDescriptor[] = [];\n\n for (const view of allViews) {\n const doc = view.resource;\n\n // Apply filters\n if (filters?.archived !== undefined && doc.archived !== filters.archived) {\n continue;\n }\n\n if (filters?.search) {\n const searchLower = filters.search.toLowerCase();\n if (!doc.name.toLowerCase().includes(searchLower)) {\n continue;\n }\n }\n\n resources.push(doc);\n }\n\n // Sort by creation date (newest first)\n resources.sort((a, b) => {\n const aTime = a.dateCreated ? new Date(a.dateCreated).getTime() : 0;\n const bTime = b.dateCreated ? new Date(b.dateCreated).getTime() : 0;\n return bTime - aTime;\n });\n\n return resources;\n }\n\n /**\n * Add content previews to resources (for search results)\n * Retrieves and decodes the first 200 characters of each resource's primary representation\n */\n static async addContentPreviews(\n resources: ResourceDescriptor[],\n config: EnvironmentConfig\n ): Promise<Array<ResourceDescriptor & { content: string }>> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n return await Promise.all(\n resources.map(async (doc) => {\n try {\n const primaryRep = getPrimaryRepresentation(doc);\n if (primaryRep?.checksum && primaryRep?.mediaType) {\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentPreview = decodeRepresentation(contentBuffer, primaryRep.mediaType).slice(0, 200);\n return { ...doc, content: contentPreview };\n }\n return { ...doc, content: '' };\n } catch {\n return { ...doc, content: '' };\n }\n })\n );\n }\n}\n","/**\n * Annotation Context\n *\n * Assembles annotation context from view storage and content store.\n * Provides methods for:\n * - Getting resource annotations\n * - Building LLM context for annotations\n * - Extracting annotation text context\n * - Generating AI summaries\n */\n\nimport { getInferenceClient } from '@semiont/inference';\nimport { generateResourceSummary } from './generation/resource-generation';\nimport {\n getBodySource,\n getTargetSource,\n getTargetSelector,\n getResourceEntityTypes,\n getTextPositionSelector,\n getPrimaryRepresentation,\n decodeRepresentation,\n} from '@semiont/api-client';\nimport type { components, AnnotationUri, GenerationContext } from '@semiont/api-client';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport type {\n EnvironmentConfig,\n ResourceId,\n ResourceAnnotations,\n AnnotationId,\n AnnotationCategory,\n} from '@semiont/core';\nimport { resourceId as createResourceId, uriToResourceId } from '@semiont/core';\nimport { getEntityTypes } from '@semiont/ontology';\nimport { ResourceContext } from './resource-context';\n\ntype AnnotationLLMContextResponse = components['schemas']['AnnotationLLMContextResponse'];\ntype TextPositionSelector = components['schemas']['TextPositionSelector'];\ntype TextQuoteSelector = components['schemas']['TextQuoteSelector'];\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\ntype AnnotationContextResponse = components['schemas']['AnnotationContextResponse'];\ntype ContextualSummaryResponse = components['schemas']['ContextualSummaryResponse'];\n\nexport interface BuildContextOptions {\n includeSourceContext?: boolean;\n includeTargetContext?: boolean;\n contextWindow?: number;\n}\n\ninterface AnnotationTextContext {\n before: string;\n selected: string;\n after: string;\n}\n\nexport class AnnotationContext {\n /**\n * Build LLM context for an annotation\n *\n * @param annotationUri - Full annotation URI (e.g., http://localhost:4000/annotations/abc123)\n * @param resourceId - Source resource ID\n * @param config - Application configuration\n * @param options - Context building options\n * @returns Rich context for LLM processing\n * @throws Error if annotation or resource not found\n */\n static async buildLLMContext(\n annotationUri: AnnotationUri,\n resourceId: ResourceId,\n config: EnvironmentConfig,\n options: BuildContextOptions = {}\n ): Promise<AnnotationLLMContextResponse> {\n const {\n includeSourceContext = true,\n includeTargetContext = true,\n contextWindow = 1000\n } = options;\n\n // Validate contextWindow range\n if (contextWindow < 100 || contextWindow > 5000) {\n throw new Error('contextWindow must be between 100 and 5000');\n }\n\n console.log(`[AnnotationContext] buildLLMContext called with annotationUri=${annotationUri}, resourceId=${resourceId}`);\n\n const basePath = config.services.filesystem!.path;\n console.log(`[AnnotationContext] basePath=${basePath}`);\n\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get source resource view\n console.log(`[AnnotationContext] Getting view for resourceId=${resourceId}`);\n let sourceView;\n try {\n sourceView = await viewStorage.get(resourceId);\n console.log(`[AnnotationContext] Got view:`, !!sourceView);\n\n if (!sourceView) {\n throw new Error('Source resource not found');\n }\n } catch (error) {\n console.error(`[AnnotationContext] Error getting view:`, error);\n throw error;\n }\n\n console.log(`[AnnotationContext] Looking for annotation ${annotationUri} in resource ${resourceId}`);\n console.log(`[AnnotationContext] View has ${sourceView.annotations.annotations.length} annotations`);\n console.log(`[AnnotationContext] First 5 annotation IDs:`, sourceView.annotations.annotations.slice(0, 5).map((a: Annotation) => a.id));\n\n // Find the annotation in the view (annotations have full URIs as their id)\n const annotation = sourceView.annotations.annotations.find((a: Annotation) => a.id === annotationUri);\n console.log(`[AnnotationContext] Found annotation:`, !!annotation);\n\n if (!annotation) {\n throw new Error('Annotation not found in view');\n }\n\n const targetSource = getTargetSource(annotation.target);\n // Extract resource ID from the target source URI (format: http://host/resources/{id})\n const targetResourceId = targetSource.split('/').pop();\n console.log(`[AnnotationContext] Target source: ${targetSource}, Expected resource ID: ${resourceId}, Extracted ID: ${targetResourceId}`);\n\n if (targetResourceId !== resourceId) {\n throw new Error(`Annotation target resource ID (${targetResourceId}) does not match expected resource ID (${resourceId})`);\n }\n\n const sourceDoc = sourceView.resource;\n\n // Get target resource if annotation is a reference (has resolved body source)\n const bodySource = getBodySource(annotation.body);\n\n // Extract target document from body source URI if present\n let targetDoc = null;\n if (bodySource) {\n // Inline extraction: \"http://localhost:4000/resources/abc123\" → \"abc123\"\n const parts = (bodySource as string).split('/');\n const lastPart = parts[parts.length - 1];\n if (!lastPart) {\n throw new Error(`Invalid body source URI: ${bodySource}`);\n }\n const targetResourceId = createResourceId(lastPart);\n const targetView = await viewStorage.get(targetResourceId);\n targetDoc = targetView?.resource || null;\n }\n\n // Build source context if requested\n let sourceContext;\n if (includeSourceContext) {\n const primaryRep = getPrimaryRepresentation(sourceDoc);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Source content not found');\n }\n const sourceContent = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentStr = decodeRepresentation(sourceContent, primaryRep.mediaType);\n\n const targetSelectorRaw = getTargetSelector(annotation.target);\n\n // Handle array of selectors - take the first one\n const targetSelector = Array.isArray(targetSelectorRaw) ? targetSelectorRaw[0] : targetSelectorRaw;\n\n console.log(`[AnnotationContext] Target selector type:`, targetSelector?.type);\n\n if (!targetSelector) {\n console.warn(`[AnnotationContext] No target selector found`);\n } else if (targetSelector.type === 'TextPositionSelector') {\n // TypeScript now knows this is TextPositionSelector with required start/end\n const selector = targetSelector as TextPositionSelector;\n const start = selector.start;\n const end = selector.end;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = contentStr.slice(start, end);\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextPositionSelector (${start}-${end})`);\n } else if (targetSelector.type === 'TextQuoteSelector') {\n // TypeScript now knows this is TextQuoteSelector with required exact\n const selector = targetSelector as TextQuoteSelector;\n const exact = selector.exact;\n const index = contentStr.indexOf(exact);\n\n if (index !== -1) {\n const start = index;\n const end = index + exact.length;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = exact;\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextQuoteSelector (found at ${index})`);\n } else {\n console.warn(`[AnnotationContext] TextQuoteSelector exact text not found in content: \"${exact.substring(0, 50)}...\"`);\n }\n } else {\n console.warn(`[AnnotationContext] Unknown selector type: ${(targetSelector as any).type}`);\n }\n }\n\n // Build target context if requested and available\n let targetContext;\n if (includeTargetContext && targetDoc) {\n const targetRep = getPrimaryRepresentation(targetDoc);\n if (targetRep?.checksum && targetRep?.mediaType) {\n const targetContent = await repStore.retrieve(targetRep.checksum, targetRep.mediaType);\n const contentStr = decodeRepresentation(targetContent, targetRep.mediaType);\n\n // Create inference client for this request (HTTP handler context)\n const client = await getInferenceClient(config);\n\n targetContext = {\n content: contentStr.slice(0, contextWindow * 2),\n summary: await generateResourceSummary(targetDoc.name, contentStr, getResourceEntityTypes(targetDoc), client),\n };\n }\n }\n\n // TODO: Generate suggested resolution using AI\n const suggestedResolution = undefined;\n\n // Build GenerationContext structure\n const generationContext: GenerationContext | undefined = sourceContext ? {\n sourceContext: {\n before: sourceContext.before || '',\n selected: sourceContext.selected,\n after: sourceContext.after || '',\n },\n metadata: {\n resourceType: 'document',\n language: sourceDoc.language as string | undefined,\n entityTypes: getEntityTypes(annotation),\n },\n } : undefined;\n\n const response: AnnotationLLMContextResponse = {\n annotation,\n sourceResource: sourceDoc,\n targetResource: targetDoc,\n ...(generationContext ? { context: generationContext } : {}),\n ...(sourceContext ? { sourceContext } : {}), // Keep for backward compatibility\n ...(targetContext ? { targetContext } : {}),\n ...(suggestedResolution ? { suggestedResolution } : {}),\n };\n\n return response;\n }\n\n /**\n * Get resource annotations from view storage (fast path)\n * Throws if view missing\n */\n static async getResourceAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceAnnotations> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const view = await viewStorage.get(resourceId);\n\n if (!view) {\n throw new Error(`Resource ${resourceId} not found in view storage`);\n }\n\n return view.annotations;\n }\n\n /**\n * Get all annotations\n * @returns Array of all annotation objects\n */\n static async getAllAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n\n // Enrich resolved references with document names\n // NOTE: Future optimization - make this optional via query param if performance becomes an issue\n return await this.enrichResolvedReferences(annotations.annotations, config);\n }\n\n /**\n * Enrich reference annotations with resolved document names\n * Adds _resolvedDocumentName property to annotations that link to documents\n * @private\n */\n private static async enrichResolvedReferences(annotations: Annotation[], config: EnvironmentConfig): Promise<Annotation[]> {\n if (!config.services?.filesystem?.path) {\n return annotations;\n }\n\n // Extract unique resolved document URIs from reference annotations\n const resolvedUris = new Set<string>();\n for (const ann of annotations) {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.type === 'SpecificResource' && item.purpose === 'linking' && item.source) {\n resolvedUris.add(item.source);\n }\n }\n }\n }\n\n if (resolvedUris.size === 0) {\n return annotations;\n }\n\n // Batch fetch all resolved documents in parallel\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const metadataPromises = Array.from(resolvedUris).map(async (uri) => {\n const docId = uri.split('/resources/')[1];\n if (!docId) return null;\n\n try {\n const view = await viewStorage.get(docId as ResourceId);\n if (view?.resource?.name) {\n return {\n uri,\n metadata: {\n name: view.resource.name,\n mediaType: view.resource.mediaType as string | undefined\n }\n };\n }\n } catch (e) {\n // Document might not exist, skip\n }\n return null;\n });\n\n const results = await Promise.all(metadataPromises);\n const uriToMetadata = new Map<string, { name: string; mediaType?: string }>();\n for (const result of results) {\n if (result) {\n uriToMetadata.set(result.uri, result.metadata);\n }\n }\n\n // Add _resolvedDocumentName and _resolvedDocumentMediaType to annotations\n return annotations.map(ann => {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.type === 'SpecificResource' && item.purpose === 'linking' && item.source) {\n const metadata = uriToMetadata.get(item.source);\n if (metadata) {\n return {\n ...ann,\n _resolvedDocumentName: metadata.name,\n _resolvedDocumentMediaType: metadata.mediaType\n } as Annotation;\n }\n }\n }\n }\n return ann;\n });\n }\n\n /**\n * Get resource stats (version info)\n * @returns Version and timestamp info for the annotations\n */\n static async getResourceStats(resourceId: ResourceId, config: EnvironmentConfig): Promise<{\n resourceId: ResourceId;\n version: number;\n updatedAt: string;\n }> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n return {\n resourceId: annotations.resourceId,\n version: annotations.version,\n updatedAt: annotations.updatedAt,\n };\n }\n\n /**\n * Check if resource exists in view storage\n */\n static async resourceExists(resourceId: ResourceId, config: EnvironmentConfig): Promise<boolean> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n return await viewStorage.exists(resourceId);\n }\n\n /**\n * Get a single annotation by ID\n * O(1) lookup using resource ID to access view storage\n */\n static async getAnnotation(annotationId: AnnotationId, resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation | null> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n // Extract short ID from annotation's full URI for comparison\n return annotations.annotations.find((a: Annotation) => {\n const shortId = a.id.split('/').pop();\n return shortId === annotationId;\n }) || null;\n }\n\n /**\n * List annotations with optional filtering\n * @param filters - Optional filters like resourceId and type\n * @throws Error if resourceId not provided (cross-resource queries not supported in view storage)\n */\n static async listAnnotations(filters: { resourceId?: ResourceId; type?: AnnotationCategory } | undefined, config: EnvironmentConfig): Promise<Annotation[]> {\n if (!filters?.resourceId) {\n throw new Error('resourceId is required for annotation listing - cross-resource queries not supported in view storage');\n }\n\n // Use view storage directly\n return await this.getAllAnnotations(filters.resourceId, config);\n }\n\n /**\n * Get annotation context (selected text with surrounding context)\n */\n static async getAnnotationContext(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n contextBefore: number,\n contextAfter: number,\n config: EnvironmentConfig\n ): Promise<AnnotationContextResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource metadata from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract context based on annotation position\n const context = this.extractAnnotationContext(annotation, contentStr, contextBefore, contextAfter);\n\n return {\n annotation: annotation,\n context,\n resource: {\n '@context': resource['@context'],\n '@id': resource['@id'],\n name: resource.name,\n entityTypes: resource.entityTypes,\n representations: resource.representations,\n archived: resource.archived,\n creationMethod: resource.creationMethod,\n wasAttributedTo: resource.wasAttributedTo,\n dateCreated: resource.dateCreated,\n },\n };\n }\n\n /**\n * Generate AI summary of annotation in context\n */\n static async generateAnnotationSummary(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<ContextualSummaryResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract annotation text with context (fixed 500 chars for summary)\n const contextSize = 500;\n const context = this.extractAnnotationContext(annotation, contentStr, contextSize, contextSize);\n\n // Extract entity types from annotation body\n const annotationEntityTypes = getEntityTypes(annotation);\n\n // Generate summary using LLM\n const summary = await this.generateSummary(resource, context, annotationEntityTypes, config);\n\n return {\n summary,\n relevantFields: {\n resourceId: resource.id,\n resourceName: resource.name,\n entityTypes: annotationEntityTypes,\n },\n context: {\n before: context.before.substring(Math.max(0, context.before.length - 200)), // Last 200 chars\n selected: context.selected,\n after: context.after.substring(0, 200), // First 200 chars\n },\n };\n }\n\n /**\n * Get resource content as string\n */\n private static async getResourceContent(\n resource: ResourceDescriptor,\n repStore: FilesystemRepresentationStore\n ): Promise<string> {\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Resource content not found');\n }\n const content = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(content, primaryRep.mediaType);\n }\n\n /**\n * Extract annotation context from resource content\n */\n private static extractAnnotationContext(\n annotation: Annotation,\n contentStr: string,\n contextBefore: number,\n contextAfter: number\n ): AnnotationTextContext {\n const targetSelector = getTargetSelector(annotation.target);\n const posSelector = targetSelector ? getTextPositionSelector(targetSelector) : null;\n if (!posSelector) {\n throw new Error('TextPositionSelector required for context');\n }\n\n const selStart = posSelector.start;\n const selEnd = posSelector.end;\n const start = Math.max(0, selStart - contextBefore);\n const end = Math.min(contentStr.length, selEnd + contextAfter);\n\n return {\n before: contentStr.substring(start, selStart),\n selected: contentStr.substring(selStart, selEnd),\n after: contentStr.substring(selEnd, end),\n };\n }\n\n /**\n * Generate LLM summary of annotation in context\n * Creates inference client per-request (HTTP handler context)\n */\n private static async generateSummary(\n resource: ResourceDescriptor,\n context: AnnotationTextContext,\n entityTypes: string[],\n config: EnvironmentConfig\n ): Promise<string> {\n const summaryPrompt = `Summarize this text in context:\n\nContext before: \"${context.before.substring(Math.max(0, context.before.length - 200))}\"\nSelected exact: \"${context.selected}\"\nContext after: \"${context.after.substring(0, 200)}\"\n\nResource: ${resource.name}\nEntity types: ${entityTypes.join(', ')}`;\n\n // Create client for this HTTP request\n const client = await getInferenceClient(config);\n return await client.generateText(summaryPrompt, 500, 0.5);\n }\n}\n","/**\n * Graph Context\n *\n * Provides graph database operations for resources and annotations.\n * All methods require graph traversal - must use graph database.\n */\n\nimport { getGraphDatabase } from '@semiont/graph';\nimport { resourceIdToURI } from '@semiont/core';\nimport type {\n ResourceId,\n EnvironmentConfig,\n GraphConnection,\n GraphPath,\n} from '@semiont/core';\nimport type { components } from '@semiont/api-client';\n\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport class GraphContext {\n /**\n * Get all resources referencing this resource (backlinks)\n * Requires graph traversal - must use graph database\n */\n static async getBacklinks(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const graphDb = await getGraphDatabase(config);\n const resourceUri = resourceIdToURI(resourceId, config.services.backend!.publicURL);\n return await graphDb.getResourceReferencedBy(resourceUri);\n }\n\n /**\n * Find shortest path between two resources\n * Requires graph traversal - must use graph database\n */\n static async findPath(\n fromResourceId: ResourceId,\n toResourceId: ResourceId,\n config: EnvironmentConfig,\n maxDepth?: number\n ): Promise<GraphPath[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.findPath(fromResourceId, toResourceId, maxDepth);\n }\n\n /**\n * Get resource connections (graph edges)\n * Requires graph traversal - must use graph database\n */\n static async getResourceConnections(resourceId: ResourceId, config: EnvironmentConfig): Promise<GraphConnection[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.getResourceConnections(resourceId);\n }\n\n /**\n * Search resources by name (cross-resource query)\n * Requires full-text search - must use graph database\n */\n static async searchResources(query: string, config: EnvironmentConfig, limit?: number): Promise<ResourceDescriptor[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.searchResources(query, limit);\n }\n}\n","/**\n * Annotation Detection\n *\n * Orchestrates the full annotation detection pipeline:\n * 1. Fetch resource metadata and content\n * 2. Build AI prompts using MotivationPrompts\n * 3. Call AI inference\n * 4. Parse and validate results using MotivationParsers\n *\n * This is the high-level API for AI-powered annotation detection.\n * Workers and other consumers should use these methods instead of\n * implementing detection logic directly.\n */\n\nimport { ResourceContext } from './resource-context';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport type { InferenceClient } from '@semiont/inference';\nimport { MotivationPrompts } from './detection/motivation-prompts';\nimport {\n MotivationParsers,\n type CommentMatch,\n type HighlightMatch,\n type AssessmentMatch,\n type TagMatch,\n} from './detection/motivation-parsers';\nimport { getTagSchema, getSchemaCategory } from '@semiont/ontology';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\nexport class AnnotationDetection {\n /**\n * Detect comments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param client - Inference client for AI operations\n * @param instructions - Optional user instructions for comment generation\n * @param tone - Optional tone guidance (e.g., \"academic\", \"conversational\")\n * @param density - Optional target number of comments per 2000 words\n * @returns Array of validated comment matches\n */\n static async detectComments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n client: InferenceClient,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<CommentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildCommentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await client.generateText(\n prompt,\n 3000, // maxTokens: Higher than highlights/assessments due to comment text\n 0.4 // temperature: Slightly higher to allow creative context\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseComments(response, content);\n }\n\n /**\n * Detect highlights in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param client - Inference client for AI operations\n * @param instructions - Optional user instructions for highlight selection\n * @param density - Optional target number of highlights per 2000 words\n * @returns Array of validated highlight matches\n */\n static async detectHighlights(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n client: InferenceClient,\n instructions?: string,\n density?: number\n ): Promise<HighlightMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildHighlightPrompt(content, instructions, density);\n\n // 4. Call AI inference\n const response = await client.generateText(\n prompt,\n 2000, // maxTokens: Lower than comments/assessments (no body text)\n 0.3 // temperature: Low for consistent importance judgments\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseHighlights(response, content);\n }\n\n /**\n * Detect assessments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param client - Inference client for AI operations\n * @param instructions - Optional user instructions for assessment generation\n * @param tone - Optional tone guidance (e.g., \"critical\", \"supportive\")\n * @param density - Optional target number of assessments per 2000 words\n * @returns Array of validated assessment matches\n */\n static async detectAssessments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n client: InferenceClient,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<AssessmentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildAssessmentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await client.generateText(\n prompt,\n 3000, // maxTokens: Higher for assessment text\n 0.3 // temperature: Lower for analytical consistency\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseAssessments(response, content);\n }\n\n /**\n * Detect tags in a resource for a specific category\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param client - Inference client for AI operations\n * @param schemaId - The tag schema identifier (e.g., \"irac\", \"imrad\")\n * @param category - The specific category to detect\n * @returns Array of validated tag matches\n */\n static async detectTags(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n client: InferenceClient,\n schemaId: string,\n category: string\n ): Promise<TagMatch[]> {\n // Validate schema and category\n const schema = getTagSchema(schemaId);\n if (!schema) {\n throw new Error(`Invalid tag schema: ${schemaId}`);\n }\n\n const categoryInfo = getSchemaCategory(schemaId, category);\n if (!categoryInfo) {\n throw new Error(`Invalid category \"${category}\" for schema ${schemaId}`);\n }\n\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store (FULL content for structural analysis)\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt with schema and category information\n const prompt = MotivationPrompts.buildTagPrompt(\n content,\n category,\n schema.name,\n schema.description,\n schema.domain,\n categoryInfo.description,\n categoryInfo.examples\n );\n\n // 4. Call AI inference\n const response = await client.generateText(\n prompt,\n 4000, // maxTokens: Higher for full document analysis\n 0.2 // temperature: Lower for structural consistency\n );\n\n // 5. Parse response (without validation)\n const parsedTags = MotivationParsers.parseTags(response);\n\n // 6. Validate offsets and add category\n return MotivationParsers.validateTagOffsets(parsedTags, content, category);\n }\n\n /**\n * Load resource content from representation store\n * Helper method used by all detection methods\n *\n * @param resourceId - The resource ID to load\n * @param config - Environment configuration\n * @returns Resource content as string, or null if not available\n */\n private static async loadResourceContent(\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<string | null> {\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) return null;\n\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep) return null;\n\n // Only process text content\n const baseMediaType = primaryRep.mediaType?.split(';')[0]?.trim() || '';\n if (baseMediaType !== 'text/plain' && baseMediaType !== 'text/markdown') {\n return null;\n }\n\n if (!primaryRep.checksum || !primaryRep.mediaType) return null;\n\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(contentBuffer, primaryRep.mediaType);\n }\n}\n","/**\n * Prompt builders for annotation detection motivations\n *\n * Provides static methods to build AI prompts for each Web Annotation motivation type.\n * Extracted from worker implementations to centralize prompt logic.\n */\n\nexport class MotivationPrompts {\n /**\n * Build a prompt for detecting comment-worthy passages\n *\n * @param content - The text content to analyze (will be truncated to 8000 chars)\n * @param instructions - Optional user-provided instructions\n * @param tone - Optional tone guidance (e.g., \"academic\", \"conversational\")\n * @param density - Optional target number of comments per 2000 words\n * @returns Formatted prompt string\n */\n static buildCommentPrompt(\n content: string,\n instructions?: string,\n tone?: string,\n density?: number\n ): string {\n let prompt: string;\n\n if (instructions) {\n // User provided specific instructions - minimal prompt, let instructions drive behavior\n const toneGuidance = tone ? ` Use a ${tone} tone.` : '';\n const densityGuidance = density\n ? `\\n\\nAim for approximately ${density} comments per 2000 words of text.`\n : ''; // Let user instructions determine density\n\n prompt = `Add comments to passages in this text following these instructions:\n\n${instructions}${toneGuidance}${densityGuidance}\n\nText to analyze:\n---\n${content.substring(0, 8000)}\n---\n\nReturn a JSON array of comments. Each comment must have:\n- \"exact\": the exact text passage being commented on (quoted verbatim from source)\n- \"start\": character offset where the passage starts\n- \"end\": character offset where the passage ends\n- \"prefix\": up to 32 characters of text immediately before the passage\n- \"suffix\": up to 32 characters of text immediately after the passage\n- \"comment\": your comment following the instructions above\n\nReturn ONLY a valid JSON array, no additional text or explanation.\n\nExample:\n[\n {\"exact\": \"the quarterly review meeting\", \"start\": 142, \"end\": 169, \"prefix\": \"We need to schedule \", \"suffix\": \" for next month.\", \"comment\": \"Who will lead this? Should we invite the external auditors?\"}\n]`;\n } else {\n // No specific instructions - fall back to explanatory/educational mode\n const toneGuidance = tone\n ? `\\n\\nTone: Use a ${tone} style in your comments.`\n : '';\n const densityGuidance = density\n ? `\\n- Aim for approximately ${density} comments per 2000 words`\n : `\\n- Aim for 3-8 comments per 2000 words (not too sparse or dense)`;\n\n prompt = `Identify passages in this text that would benefit from explanatory comments.\nFor each passage, provide contextual information, clarification, or background.${toneGuidance}\n\nGuidelines:\n- Select passages that reference technical terms, historical figures, complex concepts, or unclear references\n- Provide comments that ADD VALUE beyond restating the text\n- Focus on explanation, background, or connections to other ideas\n- Avoid obvious or trivial comments\n- Keep comments concise (1-3 sentences typically)${densityGuidance}\n\nText to analyze:\n---\n${content.substring(0, 8000)}\n---\n\nReturn a JSON array of comments. Each comment should have:\n- \"exact\": the exact text passage being commented on (quoted verbatim from source)\n- \"start\": character offset where the passage starts\n- \"end\": character offset where the passage ends\n- \"prefix\": up to 32 characters of text immediately before the passage\n- \"suffix\": up to 32 characters of text immediately after the passage\n- \"comment\": your explanatory comment (1-3 sentences, provide context/background/clarification)\n\nReturn ONLY a valid JSON array, no additional text or explanation.\n\nExample format:\n[\n {\"exact\": \"Ouranos\", \"start\": 52, \"end\": 59, \"prefix\": \"In the beginning, \", \"suffix\": \" ruled the universe\", \"comment\": \"Ouranos (also spelled Uranus) is the primordial Greek deity personifying the sky. In Hesiod's Theogony, he is the son and husband of Gaia (Earth) and father of the Titans.\"}\n]`;\n }\n\n return prompt;\n }\n\n /**\n * Build a prompt for detecting highlight-worthy passages\n *\n * @param content - The text content to analyze (will be truncated to 8000 chars)\n * @param instructions - Optional user-provided instructions\n * @param density - Optional target number of highlights per 2000 words\n * @returns Formatted prompt string\n */\n static buildHighlightPrompt(\n content: string,\n instructions?: string,\n density?: number\n ): string {\n let prompt: string;\n\n if (instructions) {\n // User provided specific instructions - minimal prompt, let instructions drive behavior\n const densityGuidance = density\n ? `\\n\\nAim for approximately ${density} highlights per 2000 words of text.`\n : ''; // Let user instructions determine density\n\n prompt = `Identify passages in this text to highlight following these instructions:\n\n${instructions}${densityGuidance}\n\nText to analyze:\n---\n${content.substring(0, 8000)}\n---\n\nReturn a JSON array of highlights. Each highlight must have:\n- \"exact\": the exact text passage to highlight (quoted verbatim from source)\n- \"start\": character offset where the passage starts\n- \"end\": character offset where the passage ends\n- \"prefix\": up to 32 characters of text immediately before the passage\n- \"suffix\": up to 32 characters of text immediately after the passage\n\nReturn ONLY a valid JSON array, no additional text or explanation.\n\nExample:\n[\n {\"exact\": \"revenue grew 45% year-over-year\", \"start\": 142, \"end\": 174, \"prefix\": \"In Q3 2024, \", \"suffix\": \", exceeding all forecasts.\"}\n]`;\n } else {\n // No specific instructions - fall back to importance/salience mode\n const densityGuidance = density\n ? `\\n- Aim for approximately ${density} highlights per 2000 words`\n : `\\n- Aim for 3-8 highlights per 2000 words (be selective)`;\n\n prompt = `Identify passages in this text that merit highlighting for their importance or salience.\nFocus on content that readers should notice and remember.\n\nGuidelines:\n- Highlight key claims, findings, or conclusions\n- Highlight important definitions, terminology, or concepts\n- Highlight notable quotes or particularly striking statements\n- Highlight critical decisions, action items, or turning points\n- Select passages that are SIGNIFICANT, not just interesting\n- Avoid trivial or obvious content${densityGuidance}\n\nText to analyze:\n---\n${content.substring(0, 8000)}\n---\n\nReturn a JSON array of highlights. Each highlight should have:\n- \"exact\": the exact text passage to highlight (quoted verbatim from source)\n- \"start\": character offset where the passage starts\n- \"end\": character offset where the passage ends\n- \"prefix\": up to 32 characters of text immediately before the passage\n- \"suffix\": up to 32 characters of text immediately after the passage\n\nReturn ONLY a valid JSON array, no additional text or explanation.\n\nExample format:\n[\n {\"exact\": \"we will discontinue support for legacy systems by March 2025\", \"start\": 52, \"end\": 113, \"prefix\": \"After careful consideration, \", \"suffix\": \". This decision affects\"}\n]`;\n }\n\n return prompt;\n }\n\n /**\n * Build a prompt for detecting assessment-worthy passages\n *\n * @param content - The text content to analyze (will be truncated to 8000 chars)\n * @param instructions - Optional user-provided instructions\n * @param tone - Optional tone guidance (e.g., \"critical\", \"supportive\")\n * @param density - Optional target number of assessments per 2000 words\n * @returns Formatted prompt string\n */\n static buildAssessmentPrompt(\n content: string,\n instructions?: string,\n tone?: string,\n density?: number\n ): string {\n let prompt: string;\n\n if (instructions) {\n // User provided specific instructions - minimal prompt, let instructions drive behavior\n const toneGuidance = tone ? ` Use a ${tone} tone.` : '';\n const densityGuidance = density\n ? `\\n\\nAim for approximately ${density} assessments per 2000 words of text.`\n : ''; // Let user instructions determine density\n\n prompt = `Assess passages in this text following these instructions:\n\n${instructions}${toneGuidance}${densityGuidance}\n\nText to analyze:\n---\n${content.substring(0, 8000)}\n---\n\nReturn a JSON array of assessments. Each assessment must have:\n- \"exact\": the exact text passage being assessed (quoted verbatim from source)\n- \"start\": character offset where the passage starts\n- \"end\": character offset where the passage ends\n- \"prefix\": up to 32 characters of text immediately before the passage\n- \"suffix\": up to 32 characters of text immediately after the passage\n- \"assessment\": your assessment following the instructions above\n\nReturn ONLY a valid JSON array, no additional text or explanation.\n\nExample:\n[\n {\"exact\": \"the quarterly revenue target\", \"start\": 142, \"end\": 169, \"prefix\": \"We established \", \"suffix\": \" for Q4 2024.\", \"assessment\": \"This target seems ambitious given market conditions. Consider revising based on recent trends.\"}\n]`;\n } else {\n // No specific instructions - fall back to analytical/evaluation mode\n const toneGuidance = tone\n ? `\\n\\nTone: Use a ${tone} style in your assessments.`\n : '';\n const densityGuidance = density\n ? `\\n- Aim for approximately ${density} assessments per 2000 words`\n : `\\n- Aim for 2-6 assessments per 2000 words (focus on key passages)`;\n\n prompt = `Identify passages in this text that merit critical assessment or evaluation.\nFor each passage, provide analysis of its validity, strength, or implications.${toneGuidance}\n\nGuidelines:\n- Select passages containing claims, arguments, conclusions, or assertions\n- Assess evidence quality, logical soundness, or practical implications\n- Provide assessments that ADD INSIGHT beyond restating the text\n- Focus on passages where evaluation would help readers form judgments\n- Keep assessments concise yet substantive (1-3 sentences typically)${densityGuidance}\n\nText to analyze:\n---\n${content.substring(0, 8000)}\n---\n\nReturn a JSON array of assessments. Each assessment should have:\n- \"exact\": the exact text passage being assessed (quoted verbatim from source)\n- \"start\": character offset where the passage starts\n- \"end\": character offset where the passage ends\n- \"prefix\": up to 32 characters of text immediately before the passage\n- \"suffix\": up to 32 characters of text immediately after the passage\n- \"assessment\": your analytical assessment (1-3 sentences, evaluate validity/strength/implications)\n\nReturn ONLY a valid JSON array, no additional text or explanation.\n\nExample format:\n[\n {\"exact\": \"AI will replace most jobs by 2030\", \"start\": 52, \"end\": 89, \"prefix\": \"Many experts predict that \", \"suffix\": \", fundamentally reshaping\", \"assessment\": \"This claim lacks nuance and supporting evidence. Employment patterns historically show job transformation rather than wholesale replacement. The timeline appears speculative without specific sector analysis.\"}\n]`;\n }\n\n return prompt;\n }\n\n /**\n * Build a prompt for detecting structural tags\n *\n * @param content - The full text content to analyze (NOT truncated for structural analysis)\n * @param category - The specific category to detect\n * @param schemaName - Human-readable schema name\n * @param schemaDescription - Schema description\n * @param schemaDomain - Schema domain\n * @param categoryDescription - Category description\n * @param categoryExamples - Example questions/guidance for this category\n * @returns Formatted prompt string\n */\n static buildTagPrompt(\n content: string,\n category: string,\n schemaName: string,\n schemaDescription: string,\n schemaDomain: string,\n categoryDescription: string,\n categoryExamples: string[]\n ): string {\n // Build prompt with schema context and category-specific guidance\n const prompt = `You are analyzing a text using the ${schemaName} framework.\n\nSchema: ${schemaDescription}\nDomain: ${schemaDomain}\n\nYour task: Identify passages that serve the structural role of \"${category}\".\n\nCategory: ${category}\nDescription: ${categoryDescription}\nKey questions:\n${categoryExamples.map(ex => `- ${ex}`).join('\\n')}\n\nGuidelines:\n- Focus on STRUCTURAL FUNCTION, not semantic content\n- A passage serves the \"${category}\" role if it performs this function in the document's structure\n- Look for passages that explicitly fulfill this role\n- Passages can be sentences, paragraphs, or sections\n- Aim for precision - only tag passages that clearly serve this structural role\n- Typical documents have 1-5 instances of each category (some may have 0)\n\nText to analyze:\n---\n${content}\n---\n\nReturn a JSON array of tags. Each tag should have:\n- \"exact\": the exact text passage (quoted verbatim from source)\n- \"start\": character offset where the passage starts\n- \"end\": character offset where the passage ends\n- \"prefix\": up to 32 characters of text immediately before the passage\n- \"suffix\": up to 32 characters of text immediately after the passage\n\nReturn ONLY a valid JSON array, no additional text or explanation.\n\nExample format:\n[\n {\"exact\": \"What duty did the defendant owe?\", \"start\": 142, \"end\": 175, \"prefix\": \"The central question is: \", \"suffix\": \" This question must be\"},\n {\"exact\": \"In tort law, a duty of care is established when...\", \"start\": 412, \"end\": 520, \"prefix\": \"Legal framework:\\\\n\", \"suffix\": \"\\\\n\\\\nApplying this standard\"}\n]`;\n\n return prompt;\n }\n}\n","/**\n * Response parsers for annotation detection motivations\n *\n * Provides static methods to parse and validate AI responses for each motivation type.\n * Includes offset validation and correction logic.\n * Extracted from worker implementations to centralize parsing logic.\n */\n\nimport { validateAndCorrectOffsets } from '@semiont/api-client';\n\n/**\n * Represents a detected comment with validated position\n */\nexport interface CommentMatch {\n exact: string;\n start: number;\n end: number;\n prefix?: string;\n suffix?: string;\n comment: string;\n}\n\n/**\n * Represents a detected highlight with validated position\n */\nexport interface HighlightMatch {\n exact: string;\n start: number;\n end: number;\n prefix?: string;\n suffix?: string;\n}\n\n/**\n * Represents a detected assessment with validated position\n */\nexport interface AssessmentMatch {\n exact: string;\n start: number;\n end: number;\n prefix?: string;\n suffix?: string;\n assessment: string;\n}\n\n/**\n * Represents a detected tag with validated position\n */\nexport interface TagMatch {\n exact: string;\n start: number;\n end: number;\n prefix?: string;\n suffix?: string;\n category: string;\n}\n\nexport class MotivationParsers {\n /**\n * Parse and validate AI response for comment detection\n *\n * @param response - Raw AI response string (may include markdown code fences)\n * @param content - Original content to validate offsets against\n * @returns Array of validated comment matches\n */\n static parseComments(response: string, content: string): CommentMatch[] {\n try {\n // Clean up markdown code fences if present\n let cleaned = response.trim();\n if (cleaned.startsWith('```')) {\n cleaned = cleaned.replace(/^```(?:json)?\\n?/, '').replace(/\\n?```$/, '');\n }\n\n const parsed = JSON.parse(cleaned);\n\n if (!Array.isArray(parsed)) {\n console.warn('[MotivationParsers] Comment response is not an array');\n return [];\n }\n\n // Validate and filter\n const valid = parsed.filter((c: any) =>\n c &&\n typeof c.exact === 'string' &&\n typeof c.start === 'number' &&\n typeof c.end === 'number' &&\n typeof c.comment === 'string' &&\n c.comment.trim().length > 0\n );\n\n console.log(`[MotivationParsers] Parsed ${valid.length} valid comments from ${parsed.length} total`);\n\n // Validate and correct AI's offsets, then extract proper context\n // AI sometimes returns offsets that don't match the actual text position\n const validatedComments: CommentMatch[] = [];\n\n for (const comment of valid) {\n try {\n const validated = validateAndCorrectOffsets(content, comment.start, comment.end, comment.exact);\n validatedComments.push({\n ...comment,\n start: validated.start,\n end: validated.end,\n prefix: validated.prefix,\n suffix: validated.suffix\n });\n } catch (error) {\n console.warn(`[MotivationParsers] Skipping invalid comment \"${comment.exact}\":`, error);\n // Skip this comment - AI hallucinated text that doesn't exist\n }\n }\n\n return validatedComments;\n } catch (error) {\n console.error('[MotivationParsers] Failed to parse AI comment response:', error);\n return [];\n }\n }\n\n /**\n * Parse and validate AI response for highlight detection\n *\n * @param response - Raw AI response string (may include markdown code fences)\n * @param content - Original content to validate offsets against\n * @returns Array of validated highlight matches\n */\n static parseHighlights(response: string, content: string): HighlightMatch[] {\n try {\n // Clean up response - remove markdown code fences if present\n let cleaned = response.trim();\n if (cleaned.startsWith('```json') || cleaned.startsWith('```')) {\n cleaned = cleaned.slice(cleaned.indexOf('\\n') + 1);\n const endIndex = cleaned.lastIndexOf('```');\n if (endIndex !== -1) {\n cleaned = cleaned.slice(0, endIndex);\n }\n }\n\n const parsed = JSON.parse(cleaned);\n if (!Array.isArray(parsed)) {\n console.warn('[MotivationParsers] Highlight response was not an array');\n return [];\n }\n\n // Validate and filter results\n const highlights = parsed.filter((h: any) =>\n h && typeof h.exact === 'string' &&\n typeof h.start === 'number' &&\n typeof h.end === 'number'\n );\n\n // Validate and correct AI's offsets, then extract proper context\n // AI sometimes returns offsets that don't match the actual text position\n const validatedHighlights: HighlightMatch[] = [];\n\n for (const highlight of highlights) {\n try {\n const validated = validateAndCorrectOffsets(content, highlight.start, highlight.end, highlight.exact);\n validatedHighlights.push({\n ...highlight,\n start: validated.start,\n end: validated.end,\n prefix: validated.prefix,\n suffix: validated.suffix\n });\n } catch (error) {\n console.warn(`[MotivationParsers] Skipping invalid highlight \"${highlight.exact}\":`, error);\n // Skip this highlight - AI hallucinated text that doesn't exist\n }\n }\n\n return validatedHighlights;\n } catch (error) {\n console.error('[MotivationParsers] Failed to parse AI highlight response:', error);\n console.error('Raw response:', response);\n return [];\n }\n }\n\n /**\n * Parse and validate AI response for assessment detection\n *\n * @param response - Raw AI response string (may include markdown code fences)\n * @param content - Original content to validate offsets against\n * @returns Array of validated assessment matches\n */\n static parseAssessments(response: string, content: string): AssessmentMatch[] {\n try {\n // Clean up response - remove markdown code fences if present\n let cleaned = response.trim();\n if (cleaned.startsWith('```json') || cleaned.startsWith('```')) {\n cleaned = cleaned.slice(cleaned.indexOf('\\n') + 1);\n const endIndex = cleaned.lastIndexOf('```');\n if (endIndex !== -1) {\n cleaned = cleaned.slice(0, endIndex);\n }\n }\n\n const parsed = JSON.parse(cleaned);\n if (!Array.isArray(parsed)) {\n console.warn('[MotivationParsers] Assessment response was not an array');\n return [];\n }\n\n // Validate and filter results\n const assessments = parsed.filter((a: any) =>\n a && typeof a.exact === 'string' &&\n typeof a.start === 'number' &&\n typeof a.end === 'number' &&\n typeof a.assessment === 'string'\n );\n\n // Validate and correct AI's offsets, then extract proper context\n // AI sometimes returns offsets that don't match the actual text position\n const validatedAssessments: AssessmentMatch[] = [];\n\n for (const assessment of assessments) {\n try {\n const validated = validateAndCorrectOffsets(content, assessment.start, assessment.end, assessment.exact);\n validatedAssessments.push({\n ...assessment,\n start: validated.start,\n end: validated.end,\n prefix: validated.prefix,\n suffix: validated.suffix\n });\n } catch (error) {\n console.warn(`[MotivationParsers] Skipping invalid assessment \"${assessment.exact}\":`, error);\n // Skip this assessment - AI hallucinated text that doesn't exist\n }\n }\n\n return validatedAssessments;\n } catch (error) {\n console.error('[MotivationParsers] Failed to parse AI assessment response:', error);\n console.error('Raw response:', response);\n return [];\n }\n }\n\n /**\n * Parse and validate AI response for tag detection\n * Note: Does NOT validate offsets - caller must do that with content\n *\n * @param response - Raw AI response string (may include markdown code fences)\n * @returns Array of tag matches (offsets not yet validated)\n */\n static parseTags(response: string): Omit<TagMatch, 'category'>[] {\n try {\n // Clean up markdown code fences if present\n let cleaned = response.trim();\n if (cleaned.startsWith('```')) {\n cleaned = cleaned.replace(/^```(?:json)?\\n?/, '').replace(/\\n?```$/, '');\n }\n\n const parsed = JSON.parse(cleaned);\n\n if (!Array.isArray(parsed)) {\n console.warn('[MotivationParsers] Tag response is not an array');\n return [];\n }\n\n // Validate and filter\n const valid = parsed.filter((t: any) =>\n t &&\n typeof t.exact === 'string' &&\n typeof t.start === 'number' &&\n typeof t.end === 'number' &&\n t.exact.trim().length > 0\n );\n\n console.log(`[MotivationParsers] Parsed ${valid.length} valid tags from ${parsed.length} total`);\n\n return valid;\n } catch (error) {\n console.error('[MotivationParsers] Failed to parse AI tag response:', error);\n return [];\n }\n }\n\n /**\n * Validate tag offsets against content and add category\n * Helper for tag detection after initial parsing\n *\n * @param tags - Parsed tags without validated offsets\n * @param content - Original content to validate against\n * @param category - Category to assign to validated tags\n * @returns Array of validated tag matches\n */\n static validateTagOffsets(\n tags: Omit<TagMatch, 'category'>[],\n content: string,\n category: string\n ): TagMatch[] {\n const validatedTags: TagMatch[] = [];\n\n for (const tag of tags) {\n try {\n const validated = validateAndCorrectOffsets(content, tag.start, tag.end, tag.exact);\n validatedTags.push({\n ...tag,\n category,\n start: validated.start,\n end: validated.end,\n prefix: validated.prefix,\n suffix: validated.suffix\n });\n } catch (error) {\n console.warn(`[MotivationParsers] Skipping invalid tag for category \"${category}\":`, error);\n // Skip this tag - AI hallucinated text that doesn't exist\n }\n }\n\n return validatedTags;\n }\n}\n","// @semiont/make-meaning - Making meaning from resources\n// Transforms raw resources into meaningful, interconnected knowledge\n\n// Service (primary export)\nexport { startMakeMeaning } from './service';\nexport type { MakeMeaningService } from './service';\n\n// Graph Consumer\nexport { GraphDBConsumer } from './graph/consumer';\n\n// Context assembly exports\nexport { ResourceContext } from './resource-context';\nexport type { ListResourcesFilters } from './resource-context';\nexport { AnnotationContext } from './annotation-context';\nexport type { BuildContextOptions } from './annotation-context';\nexport { GraphContext } from './graph-context';\n\n// Detection exports\nexport { AnnotationDetection } from './annotation-detection';\nexport { MotivationPrompts } from './detection/motivation-prompts';\nexport { MotivationParsers } from './detection/motivation-parsers';\nexport type {\n CommentMatch,\n HighlightMatch,\n AssessmentMatch,\n TagMatch,\n} from './detection/motivation-parsers';\nexport { extractEntities } from './detection/entity-extractor';\nexport type { ExtractedEntity } from './detection/entity-extractor';\n\n// Generation exports\nexport {\n generateResourceFromTopic,\n generateResourceSummary,\n generateReferenceSuggestions,\n} from './generation/resource-generation';\n\n// Job workers (exported for direct instantiation if needed)\nexport { CommentDetectionWorker } from './jobs/comment-detection-worker';\nexport { HighlightDetectionWorker } from './jobs/highlight-detection-worker';\nexport { AssessmentDetectionWorker } from './jobs/assessment-detection-worker';\nexport { TagDetectionWorker } from './jobs/tag-detection-worker';\nexport { ReferenceDetectionWorker } from './jobs/reference-detection-worker';\nexport { GenerationWorker } from './jobs/generation-worker';\n\n// Reasoning exports (future)\n// export { ResourceReasoning } from './resource-reasoning';\n\n// Placeholder for initial build\nexport const PACKAGE_NAME = '@semiont/make-meaning';\nexport const VERSION = 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