@semiont/make-meaning 0.2.30-build.60 → 0.2.30-build.62

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Files changed (5) hide show
  1. package/README.md +88 -583
  2. package/dist/index.d.ts +175 -7
  3. package/dist/index.js +1410 -54
  4. package/dist/index.js.map +1 -1
  5. package/package.json +3 -2
package/dist/index.js.map CHANGED
@@ -1 +1 @@
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- {"version":3,"sources":["../src/resource-context.ts","../src/annotation-context.ts","../src/graph-context.ts","../src/annotation-detection.ts","../src/index.ts"],"sourcesContent":["/**\n * Resource Context\n *\n * Assembles resource context from view storage and content store\n * Does NOT touch the graph - graph queries go through GraphContext\n */\n\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport type { components } from '@semiont/api-client';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport interface ListResourcesFilters {\n search?: string;\n archived?: boolean;\n}\n\nexport class ResourceContext {\n /**\n * Get resource metadata from view storage\n */\n static async getResourceMetadata(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceDescriptor | null> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const view = await viewStorage.get(resourceId);\n if (!view) {\n return null;\n }\n\n return view.resource;\n }\n\n /**\n * List all resources by scanning view storage\n */\n static async listResources(filters: ListResourcesFilters | undefined, config: EnvironmentConfig): Promise<ResourceDescriptor[]> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const allViews = await viewStorage.getAll();\n const resources: ResourceDescriptor[] = [];\n\n for (const view of allViews) {\n const doc = view.resource;\n\n // Apply filters\n if (filters?.archived !== undefined && doc.archived !== filters.archived) {\n continue;\n }\n\n if (filters?.search) {\n const searchLower = filters.search.toLowerCase();\n if (!doc.name.toLowerCase().includes(searchLower)) {\n continue;\n }\n }\n\n resources.push(doc);\n }\n\n // Sort by creation date (newest first)\n resources.sort((a, b) => {\n const aTime = a.dateCreated ? new Date(a.dateCreated).getTime() : 0;\n const bTime = b.dateCreated ? new Date(b.dateCreated).getTime() : 0;\n return bTime - aTime;\n });\n\n return resources;\n }\n\n /**\n * Add content previews to resources (for search results)\n * Retrieves and decodes the first 200 characters of each resource's primary representation\n */\n static async addContentPreviews(\n resources: ResourceDescriptor[],\n config: EnvironmentConfig\n ): Promise<Array<ResourceDescriptor & { content: string }>> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n return await Promise.all(\n resources.map(async (doc) => {\n try {\n const primaryRep = getPrimaryRepresentation(doc);\n if (primaryRep?.checksum && primaryRep?.mediaType) {\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentPreview = decodeRepresentation(contentBuffer, primaryRep.mediaType).slice(0, 200);\n return { ...doc, content: contentPreview };\n }\n return { ...doc, content: '' };\n } catch {\n return { ...doc, content: '' };\n }\n })\n );\n }\n}\n","/**\n * Annotation Context\n *\n * Assembles annotation context from view storage and content store.\n * Provides methods for:\n * - Getting resource annotations\n * - Building LLM context for annotations\n * - Extracting annotation text context\n * - Generating AI summaries\n */\n\nimport { generateResourceSummary, generateText } from '@semiont/inference';\nimport {\n getBodySource,\n getTargetSource,\n getTargetSelector,\n getResourceEntityTypes,\n getTextPositionSelector,\n getPrimaryRepresentation,\n decodeRepresentation,\n} from '@semiont/api-client';\nimport type { components, AnnotationUri, GenerationContext } from '@semiont/api-client';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport type {\n EnvironmentConfig,\n ResourceId,\n ResourceAnnotations,\n AnnotationId,\n AnnotationCategory,\n} from '@semiont/core';\nimport { resourceId as createResourceId, uriToResourceId } from '@semiont/core';\nimport { getEntityTypes } from '@semiont/ontology';\nimport { ResourceContext } from './resource-context';\n\ntype AnnotationLLMContextResponse = components['schemas']['AnnotationLLMContextResponse'];\ntype TextPositionSelector = components['schemas']['TextPositionSelector'];\ntype TextQuoteSelector = components['schemas']['TextQuoteSelector'];\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\ntype AnnotationContextResponse = components['schemas']['AnnotationContextResponse'];\ntype ContextualSummaryResponse = components['schemas']['ContextualSummaryResponse'];\n\nexport interface BuildContextOptions {\n includeSourceContext?: boolean;\n includeTargetContext?: boolean;\n contextWindow?: number;\n}\n\ninterface AnnotationTextContext {\n before: string;\n selected: string;\n after: string;\n}\n\nexport class AnnotationContext {\n /**\n * Build LLM context for an annotation\n *\n * @param annotationUri - Full annotation URI (e.g., http://localhost:4000/annotations/abc123)\n * @param resourceId - Source resource ID\n * @param config - Application configuration\n * @param options - Context building options\n * @returns Rich context for LLM processing\n * @throws Error if annotation or resource not found\n */\n static async buildLLMContext(\n annotationUri: AnnotationUri,\n resourceId: ResourceId,\n config: EnvironmentConfig,\n options: BuildContextOptions = {}\n ): Promise<AnnotationLLMContextResponse> {\n const {\n includeSourceContext = true,\n includeTargetContext = true,\n contextWindow = 1000\n } = options;\n\n // Validate contextWindow range\n if (contextWindow < 100 || contextWindow > 5000) {\n throw new Error('contextWindow must be between 100 and 5000');\n }\n\n console.log(`[AnnotationContext] buildLLMContext called with annotationUri=${annotationUri}, resourceId=${resourceId}`);\n\n const basePath = config.services.filesystem!.path;\n console.log(`[AnnotationContext] basePath=${basePath}`);\n\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get source resource view\n console.log(`[AnnotationContext] Getting view for resourceId=${resourceId}`);\n let sourceView;\n try {\n sourceView = await viewStorage.get(resourceId);\n console.log(`[AnnotationContext] Got view:`, !!sourceView);\n\n if (!sourceView) {\n throw new Error('Source resource not found');\n }\n } catch (error) {\n console.error(`[AnnotationContext] Error getting view:`, error);\n throw error;\n }\n\n console.log(`[AnnotationContext] Looking for annotation ${annotationUri} in resource ${resourceId}`);\n console.log(`[AnnotationContext] View has ${sourceView.annotations.annotations.length} annotations`);\n console.log(`[AnnotationContext] First 5 annotation IDs:`, sourceView.annotations.annotations.slice(0, 5).map((a: Annotation) => a.id));\n\n // Find the annotation in the view (annotations have full URIs as their id)\n const annotation = sourceView.annotations.annotations.find((a: Annotation) => a.id === annotationUri);\n console.log(`[AnnotationContext] Found annotation:`, !!annotation);\n\n if (!annotation) {\n throw new Error('Annotation not found in view');\n }\n\n const targetSource = getTargetSource(annotation.target);\n // Extract resource ID from the target source URI (format: http://host/resources/{id})\n const targetResourceId = targetSource.split('/').pop();\n console.log(`[AnnotationContext] Target source: ${targetSource}, Expected resource ID: ${resourceId}, Extracted ID: ${targetResourceId}`);\n\n if (targetResourceId !== resourceId) {\n throw new Error(`Annotation target resource ID (${targetResourceId}) does not match expected resource ID (${resourceId})`);\n }\n\n const sourceDoc = sourceView.resource;\n\n // Get target resource if annotation is a reference (has resolved body source)\n const bodySource = getBodySource(annotation.body);\n\n // Extract target document from body source URI if present\n let targetDoc = null;\n if (bodySource) {\n // Inline extraction: \"http://localhost:4000/resources/abc123\" → \"abc123\"\n const parts = (bodySource as string).split('/');\n const lastPart = parts[parts.length - 1];\n if (!lastPart) {\n throw new Error(`Invalid body source URI: ${bodySource}`);\n }\n const targetResourceId = createResourceId(lastPart);\n const targetView = await viewStorage.get(targetResourceId);\n targetDoc = targetView?.resource || null;\n }\n\n // Build source context if requested\n let sourceContext;\n if (includeSourceContext) {\n const primaryRep = getPrimaryRepresentation(sourceDoc);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Source content not found');\n }\n const sourceContent = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentStr = decodeRepresentation(sourceContent, primaryRep.mediaType);\n\n const targetSelectorRaw = getTargetSelector(annotation.target);\n\n // Handle array of selectors - take the first one\n const targetSelector = Array.isArray(targetSelectorRaw) ? targetSelectorRaw[0] : targetSelectorRaw;\n\n console.log(`[AnnotationContext] Target selector type:`, targetSelector?.type);\n\n if (!targetSelector) {\n console.warn(`[AnnotationContext] No target selector found`);\n } else if (targetSelector.type === 'TextPositionSelector') {\n // TypeScript now knows this is TextPositionSelector with required start/end\n const selector = targetSelector as TextPositionSelector;\n const start = selector.start;\n const end = selector.end;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = contentStr.slice(start, end);\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextPositionSelector (${start}-${end})`);\n } else if (targetSelector.type === 'TextQuoteSelector') {\n // TypeScript now knows this is TextQuoteSelector with required exact\n const selector = targetSelector as TextQuoteSelector;\n const exact = selector.exact;\n const index = contentStr.indexOf(exact);\n\n if (index !== -1) {\n const start = index;\n const end = index + exact.length;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = exact;\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextQuoteSelector (found at ${index})`);\n } else {\n console.warn(`[AnnotationContext] TextQuoteSelector exact text not found in content: \"${exact.substring(0, 50)}...\"`);\n }\n } else {\n console.warn(`[AnnotationContext] Unknown selector type: ${(targetSelector as any).type}`);\n }\n }\n\n // Build target context if requested and available\n let targetContext;\n if (includeTargetContext && targetDoc) {\n const targetRep = getPrimaryRepresentation(targetDoc);\n if (targetRep?.checksum && targetRep?.mediaType) {\n const targetContent = await repStore.retrieve(targetRep.checksum, targetRep.mediaType);\n const contentStr = decodeRepresentation(targetContent, targetRep.mediaType);\n\n targetContext = {\n content: contentStr.slice(0, contextWindow * 2),\n summary: await generateResourceSummary(targetDoc.name, contentStr, getResourceEntityTypes(targetDoc), config),\n };\n }\n }\n\n // TODO: Generate suggested resolution using AI\n const suggestedResolution = undefined;\n\n // Build GenerationContext structure\n const generationContext: GenerationContext | undefined = sourceContext ? {\n sourceContext: {\n before: sourceContext.before || '',\n selected: sourceContext.selected,\n after: sourceContext.after || '',\n },\n metadata: {\n resourceType: 'document',\n language: sourceDoc.language as string | undefined,\n entityTypes: getEntityTypes(annotation),\n },\n } : undefined;\n\n const response: AnnotationLLMContextResponse = {\n annotation,\n sourceResource: sourceDoc,\n targetResource: targetDoc,\n ...(generationContext ? { context: generationContext } : {}),\n ...(sourceContext ? { sourceContext } : {}), // Keep for backward compatibility\n ...(targetContext ? { targetContext } : {}),\n ...(suggestedResolution ? { suggestedResolution } : {}),\n };\n\n return response;\n }\n\n /**\n * Get resource annotations from view storage (fast path)\n * Throws if view missing\n */\n static async getResourceAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceAnnotations> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const view = await viewStorage.get(resourceId);\n\n if (!view) {\n throw new Error(`Resource ${resourceId} not found in view storage`);\n }\n\n return view.annotations;\n }\n\n /**\n * Get all annotations\n * @returns Array of all annotation objects\n */\n static async getAllAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n\n // Enrich resolved references with document names\n // NOTE: Future optimization - make this optional via query param if performance becomes an issue\n return await this.enrichResolvedReferences(annotations.annotations, config);\n }\n\n /**\n * Enrich reference annotations with resolved document names\n * Adds _resolvedDocumentName property to annotations that link to documents\n * @private\n */\n private static async enrichResolvedReferences(annotations: Annotation[], config: EnvironmentConfig): Promise<Annotation[]> {\n if (!config.services?.filesystem?.path) {\n return annotations;\n }\n\n // Extract unique resolved document URIs from reference annotations\n const resolvedUris = new Set<string>();\n for (const ann of annotations) {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.purpose === 'linking' && item.source) {\n resolvedUris.add(item.source);\n }\n }\n }\n }\n\n if (resolvedUris.size === 0) {\n return annotations;\n }\n\n // Batch fetch all resolved documents in parallel\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const metadataPromises = Array.from(resolvedUris).map(async (uri) => {\n const docId = uri.split('/resources/')[1];\n if (!docId) return null;\n\n try {\n const view = await viewStorage.get(docId as ResourceId);\n if (view?.resource?.name) {\n return {\n uri,\n metadata: {\n name: view.resource.name,\n mediaType: view.resource.mediaType as string | undefined\n }\n };\n }\n } catch (e) {\n // Document might not exist, skip\n }\n return null;\n });\n\n const results = await Promise.all(metadataPromises);\n const uriToMetadata = new Map<string, { name: string; mediaType?: string }>();\n for (const result of results) {\n if (result) {\n uriToMetadata.set(result.uri, result.metadata);\n }\n }\n\n // Add _resolvedDocumentName and _resolvedDocumentMediaType to annotations\n return annotations.map(ann => {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.purpose === 'linking' && item.source) {\n const metadata = uriToMetadata.get(item.source);\n if (metadata) {\n return {\n ...ann,\n _resolvedDocumentName: metadata.name,\n _resolvedDocumentMediaType: metadata.mediaType\n } as Annotation;\n }\n }\n }\n }\n return ann;\n });\n }\n\n /**\n * Get resource stats (version info)\n * @returns Version and timestamp info for the annotations\n */\n static async getResourceStats(resourceId: ResourceId, config: EnvironmentConfig): Promise<{\n resourceId: ResourceId;\n version: number;\n updatedAt: string;\n }> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n return {\n resourceId: annotations.resourceId,\n version: annotations.version,\n updatedAt: annotations.updatedAt,\n };\n }\n\n /**\n * Check if resource exists in view storage\n */\n static async resourceExists(resourceId: ResourceId, config: EnvironmentConfig): Promise<boolean> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n return await viewStorage.exists(resourceId);\n }\n\n /**\n * Get a single annotation by ID\n * O(1) lookup using resource ID to access view storage\n */\n static async getAnnotation(annotationId: AnnotationId, resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation | null> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n // Extract short ID from annotation's full URI for comparison\n return annotations.annotations.find((a: Annotation) => {\n const shortId = a.id.split('/').pop();\n return shortId === annotationId;\n }) || null;\n }\n\n /**\n * List annotations with optional filtering\n * @param filters - Optional filters like resourceId and type\n * @throws Error if resourceId not provided (cross-resource queries not supported in view storage)\n */\n static async listAnnotations(filters: { resourceId?: ResourceId; type?: AnnotationCategory } | undefined, config: EnvironmentConfig): Promise<Annotation[]> {\n if (!filters?.resourceId) {\n throw new Error('resourceId is required for annotation listing - cross-resource queries not supported in view storage');\n }\n\n // Use view storage directly\n return await this.getAllAnnotations(filters.resourceId, config);\n }\n\n /**\n * Get annotation context (selected text with surrounding context)\n */\n static async getAnnotationContext(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n contextBefore: number,\n contextAfter: number,\n config: EnvironmentConfig\n ): Promise<AnnotationContextResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource metadata from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract context based on annotation position\n const context = this.extractAnnotationContext(annotation, contentStr, contextBefore, contextAfter);\n\n return {\n annotation: annotation,\n context,\n resource: {\n '@context': resource['@context'],\n '@id': resource['@id'],\n name: resource.name,\n entityTypes: resource.entityTypes,\n representations: resource.representations,\n archived: resource.archived,\n creationMethod: resource.creationMethod,\n wasAttributedTo: resource.wasAttributedTo,\n dateCreated: resource.dateCreated,\n },\n };\n }\n\n /**\n * Generate AI summary of annotation in context\n */\n static async generateAnnotationSummary(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<ContextualSummaryResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract annotation text with context (fixed 500 chars for summary)\n const contextSize = 500;\n const context = this.extractAnnotationContext(annotation, contentStr, contextSize, contextSize);\n\n // Extract entity types from annotation body\n const annotationEntityTypes = getEntityTypes(annotation);\n\n // Generate summary using LLM\n const summary = await this.generateSummary(resource, context, annotationEntityTypes, config);\n\n return {\n summary,\n relevantFields: {\n resourceId: resource.id,\n resourceName: resource.name,\n entityTypes: annotationEntityTypes,\n },\n context: {\n before: context.before.substring(Math.max(0, context.before.length - 200)), // Last 200 chars\n selected: context.selected,\n after: context.after.substring(0, 200), // First 200 chars\n },\n };\n }\n\n /**\n * Get resource content as string\n */\n private static async getResourceContent(\n resource: ResourceDescriptor,\n repStore: FilesystemRepresentationStore\n ): Promise<string> {\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Resource content not found');\n }\n const content = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(content, primaryRep.mediaType);\n }\n\n /**\n * Extract annotation context from resource content\n */\n private static extractAnnotationContext(\n annotation: Annotation,\n contentStr: string,\n contextBefore: number,\n contextAfter: number\n ): AnnotationTextContext {\n const targetSelector = getTargetSelector(annotation.target);\n const posSelector = targetSelector ? getTextPositionSelector(targetSelector) : null;\n if (!posSelector) {\n throw new Error('TextPositionSelector required for context');\n }\n\n const selStart = posSelector.start;\n const selEnd = posSelector.end;\n const start = Math.max(0, selStart - contextBefore);\n const end = Math.min(contentStr.length, selEnd + contextAfter);\n\n return {\n before: contentStr.substring(start, selStart),\n selected: contentStr.substring(selStart, selEnd),\n after: contentStr.substring(selEnd, end),\n };\n }\n\n /**\n * Generate LLM summary of annotation in context\n */\n private static async generateSummary(\n resource: ResourceDescriptor,\n context: AnnotationTextContext,\n entityTypes: string[],\n config: EnvironmentConfig\n ): Promise<string> {\n const summaryPrompt = `Summarize this text in context:\n\nContext before: \"${context.before.substring(Math.max(0, context.before.length - 200))}\"\nSelected exact: \"${context.selected}\"\nContext after: \"${context.after.substring(0, 200)}\"\n\nResource: ${resource.name}\nEntity types: ${entityTypes.join(', ')}`;\n\n return await generateText(summaryPrompt, config, 500, 0.5);\n }\n}\n","/**\n * Graph Context\n *\n * Provides graph database operations for resources and annotations.\n * All methods require graph traversal - must use graph database.\n */\n\nimport { getGraphDatabase } from '@semiont/graph';\nimport { resourceIdToURI } from '@semiont/core';\nimport type {\n ResourceId,\n EnvironmentConfig,\n GraphConnection,\n GraphPath,\n} from '@semiont/core';\nimport type { components } from '@semiont/api-client';\n\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport class GraphContext {\n /**\n * Get all resources referencing this resource (backlinks)\n * Requires graph traversal - must use graph database\n */\n static async getBacklinks(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const graphDb = await getGraphDatabase(config);\n const resourceUri = resourceIdToURI(resourceId, config.services.backend!.publicURL);\n return await graphDb.getResourceReferencedBy(resourceUri);\n }\n\n /**\n * Find shortest path between two resources\n * Requires graph traversal - must use graph database\n */\n static async findPath(\n fromResourceId: ResourceId,\n toResourceId: ResourceId,\n config: EnvironmentConfig,\n maxDepth?: number\n ): Promise<GraphPath[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.findPath(fromResourceId, toResourceId, maxDepth);\n }\n\n /**\n * Get resource connections (graph edges)\n * Requires graph traversal - must use graph database\n */\n static async getResourceConnections(resourceId: ResourceId, config: EnvironmentConfig): Promise<GraphConnection[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.getResourceConnections(resourceId);\n }\n\n /**\n * Search resources by name (cross-resource query)\n * Requires full-text search - must use graph database\n */\n static async searchResources(query: string, config: EnvironmentConfig, limit?: number): Promise<ResourceDescriptor[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.searchResources(query, limit);\n }\n}\n","/**\n * Annotation Detection\n *\n * Orchestrates the full annotation detection pipeline:\n * 1. Fetch resource metadata and content\n * 2. Build AI prompts using MotivationPrompts\n * 3. Call AI inference\n * 4. Parse and validate results using MotivationParsers\n *\n * This is the high-level API for AI-powered annotation detection.\n * Workers and other consumers should use these methods instead of\n * implementing detection logic directly.\n */\n\nimport { ResourceContext } from './resource-context';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport {\n MotivationPrompts,\n MotivationParsers,\n generateText,\n type CommentMatch,\n type HighlightMatch,\n type AssessmentMatch,\n type TagMatch,\n} from '@semiont/inference';\nimport { getTagSchema, getSchemaCategory } from '@semiont/ontology';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\nexport class AnnotationDetection {\n /**\n * Detect comments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for comment generation\n * @param tone - Optional tone guidance (e.g., \"academic\", \"conversational\")\n * @param density - Optional target number of comments per 2000 words\n * @returns Array of validated comment matches\n */\n static async detectComments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<CommentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildCommentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 3000, // maxTokens: Higher than highlights/assessments due to comment text\n 0.4 // temperature: Slightly higher to allow creative context\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseComments(response, content);\n }\n\n /**\n * Detect highlights in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for highlight selection\n * @param density - Optional target number of highlights per 2000 words\n * @returns Array of validated highlight matches\n */\n static async detectHighlights(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n density?: number\n ): Promise<HighlightMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildHighlightPrompt(content, instructions, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 2000, // maxTokens: Lower than comments/assessments (no body text)\n 0.3 // temperature: Low for consistent importance judgments\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseHighlights(response, content);\n }\n\n /**\n * Detect assessments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for assessment generation\n * @param tone - Optional tone guidance (e.g., \"critical\", \"supportive\")\n * @param density - Optional target number of assessments per 2000 words\n * @returns Array of validated assessment matches\n */\n static async detectAssessments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<AssessmentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildAssessmentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 3000, // maxTokens: Higher for assessment text\n 0.3 // temperature: Lower for analytical consistency\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseAssessments(response, content);\n }\n\n /**\n * Detect tags in a resource for a specific category\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param schemaId - The tag schema identifier (e.g., \"irac\", \"imrad\")\n * @param category - The specific category to detect\n * @returns Array of validated tag matches\n */\n static async detectTags(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n schemaId: string,\n category: string\n ): Promise<TagMatch[]> {\n // Validate schema and category\n const schema = getTagSchema(schemaId);\n if (!schema) {\n throw new Error(`Invalid tag schema: ${schemaId}`);\n }\n\n const categoryInfo = getSchemaCategory(schemaId, category);\n if (!categoryInfo) {\n throw new Error(`Invalid category \"${category}\" for schema ${schemaId}`);\n }\n\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store (FULL content for structural analysis)\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt with schema and category information\n const prompt = MotivationPrompts.buildTagPrompt(\n content,\n category,\n schema.name,\n schema.description,\n schema.domain,\n categoryInfo.description,\n categoryInfo.examples\n );\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 4000, // maxTokens: Higher for full document analysis\n 0.2 // temperature: Lower for structural consistency\n );\n\n // 5. Parse response (without validation)\n const parsedTags = MotivationParsers.parseTags(response);\n\n // 6. Validate offsets and add category\n return MotivationParsers.validateTagOffsets(parsedTags, content, category);\n }\n\n /**\n * Load resource content from representation store\n * Helper method used by all detection methods\n *\n * @param resourceId - The resource ID to load\n * @param config - Environment configuration\n * @returns Resource content as string, or null if not available\n */\n private static async loadResourceContent(\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<string | null> {\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) return null;\n\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep) return null;\n\n // Only process text content\n const baseMediaType = primaryRep.mediaType?.split(';')[0]?.trim() || '';\n if (baseMediaType !== 'text/plain' && baseMediaType !== 'text/markdown') {\n return null;\n }\n\n if (!primaryRep.checksum || !primaryRep.mediaType) return null;\n\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(contentBuffer, primaryRep.mediaType);\n }\n}\n","// @semiont/make-meaning - Making meaning from resources\n// Transforms raw resources into meaningful, interconnected knowledge\n\n// Context assembly exports\nexport { ResourceContext } from './resource-context';\nexport type { ListResourcesFilters } from './resource-context';\nexport { AnnotationContext } from './annotation-context';\nexport type { BuildContextOptions } from './annotation-context';\nexport { GraphContext } from './graph-context';\n\n// Detection exports\nexport { AnnotationDetection } from './annotation-detection';\n\n// Re-export match types from @semiont/inference for convenience\nexport type {\n CommentMatch,\n HighlightMatch,\n AssessmentMatch,\n TagMatch,\n} from '@semiont/inference';\n\n// Reasoning exports (future)\n// export { ResourceReasoning } from './resource-reasoning';\n\n// Placeholder for initial build\nexport const PACKAGE_NAME = '@semiont/make-meaning';\nexport const VERSION = 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1
+ {"version":3,"sources":["../src/resource-context.ts","../src/annotation-context.ts","../src/graph-context.ts","../src/annotation-detection.ts","../src/jobs/workers/comment-detection-worker.ts","../src/jobs/workers/highlight-detection-worker.ts","../src/jobs/workers/assessment-detection-worker.ts","../src/jobs/workers/tag-detection-worker.ts","../src/jobs/workers/reference-detection-worker.ts","../src/jobs/workers/generation-worker.ts","../src/index.ts"],"sourcesContent":["/**\n * Resource Context\n *\n * Assembles resource context from view storage and content store\n * Does NOT touch the graph - graph queries go through GraphContext\n */\n\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport type { components } from '@semiont/api-client';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport interface ListResourcesFilters {\n search?: string;\n archived?: boolean;\n}\n\nexport class ResourceContext {\n /**\n * Get resource metadata from view storage\n */\n static async getResourceMetadata(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceDescriptor | null> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const view = await viewStorage.get(resourceId);\n if (!view) {\n return null;\n }\n\n return view.resource;\n }\n\n /**\n * List all resources by scanning view storage\n */\n static async listResources(filters: ListResourcesFilters | undefined, config: EnvironmentConfig): Promise<ResourceDescriptor[]> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const allViews = await viewStorage.getAll();\n const resources: ResourceDescriptor[] = [];\n\n for (const view of allViews) {\n const doc = view.resource;\n\n // Apply filters\n if (filters?.archived !== undefined && doc.archived !== filters.archived) {\n continue;\n }\n\n if (filters?.search) {\n const searchLower = filters.search.toLowerCase();\n if (!doc.name.toLowerCase().includes(searchLower)) {\n continue;\n }\n }\n\n resources.push(doc);\n }\n\n // Sort by creation date (newest first)\n resources.sort((a, b) => {\n const aTime = a.dateCreated ? new Date(a.dateCreated).getTime() : 0;\n const bTime = b.dateCreated ? new Date(b.dateCreated).getTime() : 0;\n return bTime - aTime;\n });\n\n return resources;\n }\n\n /**\n * Add content previews to resources (for search results)\n * Retrieves and decodes the first 200 characters of each resource's primary representation\n */\n static async addContentPreviews(\n resources: ResourceDescriptor[],\n config: EnvironmentConfig\n ): Promise<Array<ResourceDescriptor & { content: string }>> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n return await Promise.all(\n resources.map(async (doc) => {\n try {\n const primaryRep = getPrimaryRepresentation(doc);\n if (primaryRep?.checksum && primaryRep?.mediaType) {\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentPreview = decodeRepresentation(contentBuffer, primaryRep.mediaType).slice(0, 200);\n return { ...doc, content: contentPreview };\n }\n return { ...doc, content: '' };\n } catch {\n return { ...doc, content: '' };\n }\n })\n );\n }\n}\n","/**\n * Annotation Context\n *\n * Assembles annotation context from view storage and content store.\n * Provides methods for:\n * - Getting resource annotations\n * - Building LLM context for annotations\n * - Extracting annotation text context\n * - Generating AI summaries\n */\n\nimport { generateResourceSummary, generateText } from '@semiont/inference';\nimport {\n getBodySource,\n getTargetSource,\n getTargetSelector,\n getResourceEntityTypes,\n getTextPositionSelector,\n getPrimaryRepresentation,\n decodeRepresentation,\n} from '@semiont/api-client';\nimport type { components, AnnotationUri, GenerationContext } from '@semiont/api-client';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { FilesystemViewStorage } from '@semiont/event-sourcing';\nimport type {\n EnvironmentConfig,\n ResourceId,\n ResourceAnnotations,\n AnnotationId,\n AnnotationCategory,\n} from '@semiont/core';\nimport { resourceId as createResourceId, uriToResourceId } from '@semiont/core';\nimport { getEntityTypes } from '@semiont/ontology';\nimport { ResourceContext } from './resource-context';\n\ntype AnnotationLLMContextResponse = components['schemas']['AnnotationLLMContextResponse'];\ntype TextPositionSelector = components['schemas']['TextPositionSelector'];\ntype TextQuoteSelector = components['schemas']['TextQuoteSelector'];\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\ntype AnnotationContextResponse = components['schemas']['AnnotationContextResponse'];\ntype ContextualSummaryResponse = components['schemas']['ContextualSummaryResponse'];\n\nexport interface BuildContextOptions {\n includeSourceContext?: boolean;\n includeTargetContext?: boolean;\n contextWindow?: number;\n}\n\ninterface AnnotationTextContext {\n before: string;\n selected: string;\n after: string;\n}\n\nexport class AnnotationContext {\n /**\n * Build LLM context for an annotation\n *\n * @param annotationUri - Full annotation URI (e.g., http://localhost:4000/annotations/abc123)\n * @param resourceId - Source resource ID\n * @param config - Application configuration\n * @param options - Context building options\n * @returns Rich context for LLM processing\n * @throws Error if annotation or resource not found\n */\n static async buildLLMContext(\n annotationUri: AnnotationUri,\n resourceId: ResourceId,\n config: EnvironmentConfig,\n options: BuildContextOptions = {}\n ): Promise<AnnotationLLMContextResponse> {\n const {\n includeSourceContext = true,\n includeTargetContext = true,\n contextWindow = 1000\n } = options;\n\n // Validate contextWindow range\n if (contextWindow < 100 || contextWindow > 5000) {\n throw new Error('contextWindow must be between 100 and 5000');\n }\n\n console.log(`[AnnotationContext] buildLLMContext called with annotationUri=${annotationUri}, resourceId=${resourceId}`);\n\n const basePath = config.services.filesystem!.path;\n console.log(`[AnnotationContext] basePath=${basePath}`);\n\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get source resource view\n console.log(`[AnnotationContext] Getting view for resourceId=${resourceId}`);\n let sourceView;\n try {\n sourceView = await viewStorage.get(resourceId);\n console.log(`[AnnotationContext] Got view:`, !!sourceView);\n\n if (!sourceView) {\n throw new Error('Source resource not found');\n }\n } catch (error) {\n console.error(`[AnnotationContext] Error getting view:`, error);\n throw error;\n }\n\n console.log(`[AnnotationContext] Looking for annotation ${annotationUri} in resource ${resourceId}`);\n console.log(`[AnnotationContext] View has ${sourceView.annotations.annotations.length} annotations`);\n console.log(`[AnnotationContext] First 5 annotation IDs:`, sourceView.annotations.annotations.slice(0, 5).map((a: Annotation) => a.id));\n\n // Find the annotation in the view (annotations have full URIs as their id)\n const annotation = sourceView.annotations.annotations.find((a: Annotation) => a.id === annotationUri);\n console.log(`[AnnotationContext] Found annotation:`, !!annotation);\n\n if (!annotation) {\n throw new Error('Annotation not found in view');\n }\n\n const targetSource = getTargetSource(annotation.target);\n // Extract resource ID from the target source URI (format: http://host/resources/{id})\n const targetResourceId = targetSource.split('/').pop();\n console.log(`[AnnotationContext] Target source: ${targetSource}, Expected resource ID: ${resourceId}, Extracted ID: ${targetResourceId}`);\n\n if (targetResourceId !== resourceId) {\n throw new Error(`Annotation target resource ID (${targetResourceId}) does not match expected resource ID (${resourceId})`);\n }\n\n const sourceDoc = sourceView.resource;\n\n // Get target resource if annotation is a reference (has resolved body source)\n const bodySource = getBodySource(annotation.body);\n\n // Extract target document from body source URI if present\n let targetDoc = null;\n if (bodySource) {\n // Inline extraction: \"http://localhost:4000/resources/abc123\" → \"abc123\"\n const parts = (bodySource as string).split('/');\n const lastPart = parts[parts.length - 1];\n if (!lastPart) {\n throw new Error(`Invalid body source URI: ${bodySource}`);\n }\n const targetResourceId = createResourceId(lastPart);\n const targetView = await viewStorage.get(targetResourceId);\n targetDoc = targetView?.resource || null;\n }\n\n // Build source context if requested\n let sourceContext;\n if (includeSourceContext) {\n const primaryRep = getPrimaryRepresentation(sourceDoc);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Source content not found');\n }\n const sourceContent = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const contentStr = decodeRepresentation(sourceContent, primaryRep.mediaType);\n\n const targetSelectorRaw = getTargetSelector(annotation.target);\n\n // Handle array of selectors - take the first one\n const targetSelector = Array.isArray(targetSelectorRaw) ? targetSelectorRaw[0] : targetSelectorRaw;\n\n console.log(`[AnnotationContext] Target selector type:`, targetSelector?.type);\n\n if (!targetSelector) {\n console.warn(`[AnnotationContext] No target selector found`);\n } else if (targetSelector.type === 'TextPositionSelector') {\n // TypeScript now knows this is TextPositionSelector with required start/end\n const selector = targetSelector as TextPositionSelector;\n const start = selector.start;\n const end = selector.end;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = contentStr.slice(start, end);\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextPositionSelector (${start}-${end})`);\n } else if (targetSelector.type === 'TextQuoteSelector') {\n // TypeScript now knows this is TextQuoteSelector with required exact\n const selector = targetSelector as TextQuoteSelector;\n const exact = selector.exact;\n const index = contentStr.indexOf(exact);\n\n if (index !== -1) {\n const start = index;\n const end = index + exact.length;\n\n const before = contentStr.slice(Math.max(0, start - contextWindow), start);\n const selected = exact;\n const after = contentStr.slice(end, Math.min(contentStr.length, end + contextWindow));\n\n sourceContext = { before, selected, after };\n console.log(`[AnnotationContext] Built source context using TextQuoteSelector (found at ${index})`);\n } else {\n console.warn(`[AnnotationContext] TextQuoteSelector exact text not found in content: \"${exact.substring(0, 50)}...\"`);\n }\n } else {\n console.warn(`[AnnotationContext] Unknown selector type: ${(targetSelector as any).type}`);\n }\n }\n\n // Build target context if requested and available\n let targetContext;\n if (includeTargetContext && targetDoc) {\n const targetRep = getPrimaryRepresentation(targetDoc);\n if (targetRep?.checksum && targetRep?.mediaType) {\n const targetContent = await repStore.retrieve(targetRep.checksum, targetRep.mediaType);\n const contentStr = decodeRepresentation(targetContent, targetRep.mediaType);\n\n targetContext = {\n content: contentStr.slice(0, contextWindow * 2),\n summary: await generateResourceSummary(targetDoc.name, contentStr, getResourceEntityTypes(targetDoc), config),\n };\n }\n }\n\n // TODO: Generate suggested resolution using AI\n const suggestedResolution = undefined;\n\n // Build GenerationContext structure\n const generationContext: GenerationContext | undefined = sourceContext ? {\n sourceContext: {\n before: sourceContext.before || '',\n selected: sourceContext.selected,\n after: sourceContext.after || '',\n },\n metadata: {\n resourceType: 'document',\n language: sourceDoc.language as string | undefined,\n entityTypes: getEntityTypes(annotation),\n },\n } : undefined;\n\n const response: AnnotationLLMContextResponse = {\n annotation,\n sourceResource: sourceDoc,\n targetResource: targetDoc,\n ...(generationContext ? { context: generationContext } : {}),\n ...(sourceContext ? { sourceContext } : {}), // Keep for backward compatibility\n ...(targetContext ? { targetContext } : {}),\n ...(suggestedResolution ? { suggestedResolution } : {}),\n };\n\n return response;\n }\n\n /**\n * Get resource annotations from view storage (fast path)\n * Throws if view missing\n */\n static async getResourceAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<ResourceAnnotations> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const view = await viewStorage.get(resourceId);\n\n if (!view) {\n throw new Error(`Resource ${resourceId} not found in view storage`);\n }\n\n return view.annotations;\n }\n\n /**\n * Get all annotations\n * @returns Array of all annotation objects\n */\n static async getAllAnnotations(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n\n // Enrich resolved references with document names\n // NOTE: Future optimization - make this optional via query param if performance becomes an issue\n return await this.enrichResolvedReferences(annotations.annotations, config);\n }\n\n /**\n * Enrich reference annotations with resolved document names\n * Adds _resolvedDocumentName property to annotations that link to documents\n * @private\n */\n private static async enrichResolvedReferences(annotations: Annotation[], config: EnvironmentConfig): Promise<Annotation[]> {\n if (!config.services?.filesystem?.path) {\n return annotations;\n }\n\n // Extract unique resolved document URIs from reference annotations\n const resolvedUris = new Set<string>();\n for (const ann of annotations) {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.purpose === 'linking' && item.source) {\n resolvedUris.add(item.source);\n }\n }\n }\n }\n\n if (resolvedUris.size === 0) {\n return annotations;\n }\n\n // Batch fetch all resolved documents in parallel\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n\n const metadataPromises = Array.from(resolvedUris).map(async (uri) => {\n const docId = uri.split('/resources/')[1];\n if (!docId) return null;\n\n try {\n const view = await viewStorage.get(docId as ResourceId);\n if (view?.resource?.name) {\n return {\n uri,\n metadata: {\n name: view.resource.name,\n mediaType: view.resource.mediaType as string | undefined\n }\n };\n }\n } catch (e) {\n // Document might not exist, skip\n }\n return null;\n });\n\n const results = await Promise.all(metadataPromises);\n const uriToMetadata = new Map<string, { name: string; mediaType?: string }>();\n for (const result of results) {\n if (result) {\n uriToMetadata.set(result.uri, result.metadata);\n }\n }\n\n // Add _resolvedDocumentName and _resolvedDocumentMediaType to annotations\n return annotations.map(ann => {\n if (ann.motivation === 'linking' && ann.body) {\n const body = Array.isArray(ann.body) ? ann.body : [ann.body];\n for (const item of body) {\n if (item.purpose === 'linking' && item.source) {\n const metadata = uriToMetadata.get(item.source);\n if (metadata) {\n return {\n ...ann,\n _resolvedDocumentName: metadata.name,\n _resolvedDocumentMediaType: metadata.mediaType\n } as Annotation;\n }\n }\n }\n }\n return ann;\n });\n }\n\n /**\n * Get resource stats (version info)\n * @returns Version and timestamp info for the annotations\n */\n static async getResourceStats(resourceId: ResourceId, config: EnvironmentConfig): Promise<{\n resourceId: ResourceId;\n version: number;\n updatedAt: string;\n }> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n return {\n resourceId: annotations.resourceId,\n version: annotations.version,\n updatedAt: annotations.updatedAt,\n };\n }\n\n /**\n * Check if resource exists in view storage\n */\n static async resourceExists(resourceId: ResourceId, config: EnvironmentConfig): Promise<boolean> {\n if (!config.services?.filesystem?.path) {\n throw new Error('Filesystem path not found in configuration');\n }\n const basePath = config.services.filesystem.path;\n const projectRoot = config._metadata?.projectRoot;\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n return await viewStorage.exists(resourceId);\n }\n\n /**\n * Get a single annotation by ID\n * O(1) lookup using resource ID to access view storage\n */\n static async getAnnotation(annotationId: AnnotationId, resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation | null> {\n const annotations = await this.getResourceAnnotations(resourceId, config);\n // Extract short ID from annotation's full URI for comparison\n return annotations.annotations.find((a: Annotation) => {\n const shortId = a.id.split('/').pop();\n return shortId === annotationId;\n }) || null;\n }\n\n /**\n * List annotations with optional filtering\n * @param filters - Optional filters like resourceId and type\n * @throws Error if resourceId not provided (cross-resource queries not supported in view storage)\n */\n static async listAnnotations(filters: { resourceId?: ResourceId; type?: AnnotationCategory } | undefined, config: EnvironmentConfig): Promise<Annotation[]> {\n if (!filters?.resourceId) {\n throw new Error('resourceId is required for annotation listing - cross-resource queries not supported in view storage');\n }\n\n // Use view storage directly\n return await this.getAllAnnotations(filters.resourceId, config);\n }\n\n /**\n * Get annotation context (selected text with surrounding context)\n */\n static async getAnnotationContext(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n contextBefore: number,\n contextAfter: number,\n config: EnvironmentConfig\n ): Promise<AnnotationContextResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource metadata from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract context based on annotation position\n const context = this.extractAnnotationContext(annotation, contentStr, contextBefore, contextAfter);\n\n return {\n annotation: annotation,\n context,\n resource: {\n '@context': resource['@context'],\n '@id': resource['@id'],\n name: resource.name,\n entityTypes: resource.entityTypes,\n representations: resource.representations,\n archived: resource.archived,\n creationMethod: resource.creationMethod,\n wasAttributedTo: resource.wasAttributedTo,\n dateCreated: resource.dateCreated,\n },\n };\n }\n\n /**\n * Generate AI summary of annotation in context\n */\n static async generateAnnotationSummary(\n annotationId: AnnotationId,\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<ContextualSummaryResponse> {\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Get annotation from view storage\n const annotation = await this.getAnnotation(annotationId, resourceId, config);\n if (!annotation) {\n throw new Error('Annotation not found');\n }\n\n // Get resource from view storage\n const resource = await ResourceContext.getResourceMetadata(\n uriToResourceId(getTargetSource(annotation.target)),\n config\n );\n if (!resource) {\n throw new Error('Resource not found');\n }\n\n // Get content from representation store\n const contentStr = await this.getResourceContent(resource, repStore);\n\n // Extract annotation text with context (fixed 500 chars for summary)\n const contextSize = 500;\n const context = this.extractAnnotationContext(annotation, contentStr, contextSize, contextSize);\n\n // Extract entity types from annotation body\n const annotationEntityTypes = getEntityTypes(annotation);\n\n // Generate summary using LLM\n const summary = await this.generateSummary(resource, context, annotationEntityTypes, config);\n\n return {\n summary,\n relevantFields: {\n resourceId: resource.id,\n resourceName: resource.name,\n entityTypes: annotationEntityTypes,\n },\n context: {\n before: context.before.substring(Math.max(0, context.before.length - 200)), // Last 200 chars\n selected: context.selected,\n after: context.after.substring(0, 200), // First 200 chars\n },\n };\n }\n\n /**\n * Get resource content as string\n */\n private static async getResourceContent(\n resource: ResourceDescriptor,\n repStore: FilesystemRepresentationStore\n ): Promise<string> {\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep?.checksum || !primaryRep?.mediaType) {\n throw new Error('Resource content not found');\n }\n const content = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(content, primaryRep.mediaType);\n }\n\n /**\n * Extract annotation context from resource content\n */\n private static extractAnnotationContext(\n annotation: Annotation,\n contentStr: string,\n contextBefore: number,\n contextAfter: number\n ): AnnotationTextContext {\n const targetSelector = getTargetSelector(annotation.target);\n const posSelector = targetSelector ? getTextPositionSelector(targetSelector) : null;\n if (!posSelector) {\n throw new Error('TextPositionSelector required for context');\n }\n\n const selStart = posSelector.start;\n const selEnd = posSelector.end;\n const start = Math.max(0, selStart - contextBefore);\n const end = Math.min(contentStr.length, selEnd + contextAfter);\n\n return {\n before: contentStr.substring(start, selStart),\n selected: contentStr.substring(selStart, selEnd),\n after: contentStr.substring(selEnd, end),\n };\n }\n\n /**\n * Generate LLM summary of annotation in context\n */\n private static async generateSummary(\n resource: ResourceDescriptor,\n context: AnnotationTextContext,\n entityTypes: string[],\n config: EnvironmentConfig\n ): Promise<string> {\n const summaryPrompt = `Summarize this text in context:\n\nContext before: \"${context.before.substring(Math.max(0, context.before.length - 200))}\"\nSelected exact: \"${context.selected}\"\nContext after: \"${context.after.substring(0, 200)}\"\n\nResource: ${resource.name}\nEntity types: ${entityTypes.join(', ')}`;\n\n return await generateText(summaryPrompt, config, 500, 0.5);\n }\n}\n","/**\n * Graph Context\n *\n * Provides graph database operations for resources and annotations.\n * All methods require graph traversal - must use graph database.\n */\n\nimport { getGraphDatabase } from '@semiont/graph';\nimport { resourceIdToURI } from '@semiont/core';\nimport type {\n ResourceId,\n EnvironmentConfig,\n GraphConnection,\n GraphPath,\n} from '@semiont/core';\nimport type { components } from '@semiont/api-client';\n\ntype Annotation = components['schemas']['Annotation'];\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport class GraphContext {\n /**\n * Get all resources referencing this resource (backlinks)\n * Requires graph traversal - must use graph database\n */\n static async getBacklinks(resourceId: ResourceId, config: EnvironmentConfig): Promise<Annotation[]> {\n const graphDb = await getGraphDatabase(config);\n const resourceUri = resourceIdToURI(resourceId, config.services.backend!.publicURL);\n return await graphDb.getResourceReferencedBy(resourceUri);\n }\n\n /**\n * Find shortest path between two resources\n * Requires graph traversal - must use graph database\n */\n static async findPath(\n fromResourceId: ResourceId,\n toResourceId: ResourceId,\n config: EnvironmentConfig,\n maxDepth?: number\n ): Promise<GraphPath[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.findPath(fromResourceId, toResourceId, maxDepth);\n }\n\n /**\n * Get resource connections (graph edges)\n * Requires graph traversal - must use graph database\n */\n static async getResourceConnections(resourceId: ResourceId, config: EnvironmentConfig): Promise<GraphConnection[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.getResourceConnections(resourceId);\n }\n\n /**\n * Search resources by name (cross-resource query)\n * Requires full-text search - must use graph database\n */\n static async searchResources(query: string, config: EnvironmentConfig, limit?: number): Promise<ResourceDescriptor[]> {\n const graphDb = await getGraphDatabase(config);\n return await graphDb.searchResources(query, limit);\n }\n}\n","/**\n * Annotation Detection\n *\n * Orchestrates the full annotation detection pipeline:\n * 1. Fetch resource metadata and content\n * 2. Build AI prompts using MotivationPrompts\n * 3. Call AI inference\n * 4. Parse and validate results using MotivationParsers\n *\n * This is the high-level API for AI-powered annotation detection.\n * Workers and other consumers should use these methods instead of\n * implementing detection logic directly.\n */\n\nimport { ResourceContext } from './resource-context';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { getPrimaryRepresentation, decodeRepresentation } from '@semiont/api-client';\nimport {\n MotivationPrompts,\n MotivationParsers,\n generateText,\n type CommentMatch,\n type HighlightMatch,\n type AssessmentMatch,\n type TagMatch,\n} from '@semiont/inference';\nimport { getTagSchema, getSchemaCategory } from '@semiont/ontology';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\n\nexport class AnnotationDetection {\n /**\n * Detect comments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for comment generation\n * @param tone - Optional tone guidance (e.g., \"academic\", \"conversational\")\n * @param density - Optional target number of comments per 2000 words\n * @returns Array of validated comment matches\n */\n static async detectComments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<CommentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildCommentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 3000, // maxTokens: Higher than highlights/assessments due to comment text\n 0.4 // temperature: Slightly higher to allow creative context\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseComments(response, content);\n }\n\n /**\n * Detect highlights in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for highlight selection\n * @param density - Optional target number of highlights per 2000 words\n * @returns Array of validated highlight matches\n */\n static async detectHighlights(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n density?: number\n ): Promise<HighlightMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildHighlightPrompt(content, instructions, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 2000, // maxTokens: Lower than comments/assessments (no body text)\n 0.3 // temperature: Low for consistent importance judgments\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseHighlights(response, content);\n }\n\n /**\n * Detect assessments in a resource\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param instructions - Optional user instructions for assessment generation\n * @param tone - Optional tone guidance (e.g., \"critical\", \"supportive\")\n * @param density - Optional target number of assessments per 2000 words\n * @returns Array of validated assessment matches\n */\n static async detectAssessments(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n instructions?: string,\n tone?: string,\n density?: number\n ): Promise<AssessmentMatch[]> {\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt\n const prompt = MotivationPrompts.buildAssessmentPrompt(content, instructions, tone, density);\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 3000, // maxTokens: Higher for assessment text\n 0.3 // temperature: Lower for analytical consistency\n );\n\n // 5. Parse and validate response\n return MotivationParsers.parseAssessments(response, content);\n }\n\n /**\n * Detect tags in a resource for a specific category\n *\n * @param resourceId - The resource to analyze\n * @param config - Environment configuration\n * @param schemaId - The tag schema identifier (e.g., \"irac\", \"imrad\")\n * @param category - The specific category to detect\n * @returns Array of validated tag matches\n */\n static async detectTags(\n resourceId: ResourceId,\n config: EnvironmentConfig,\n schemaId: string,\n category: string\n ): Promise<TagMatch[]> {\n // Validate schema and category\n const schema = getTagSchema(schemaId);\n if (!schema) {\n throw new Error(`Invalid tag schema: ${schemaId}`);\n }\n\n const categoryInfo = getSchemaCategory(schemaId, category);\n if (!categoryInfo) {\n throw new Error(`Invalid category \"${category}\" for schema ${schemaId}`);\n }\n\n // 1. Fetch resource metadata\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) {\n throw new Error(`Resource ${resourceId} not found`);\n }\n\n // 2. Load content from representation store (FULL content for structural analysis)\n const content = await this.loadResourceContent(resourceId, config);\n if (!content) {\n throw new Error(`Could not load content for resource ${resourceId}`);\n }\n\n // 3. Build prompt with schema and category information\n const prompt = MotivationPrompts.buildTagPrompt(\n content,\n category,\n schema.name,\n schema.description,\n schema.domain,\n categoryInfo.description,\n categoryInfo.examples\n );\n\n // 4. Call AI inference\n const response = await generateText(\n prompt,\n config,\n 4000, // maxTokens: Higher for full document analysis\n 0.2 // temperature: Lower for structural consistency\n );\n\n // 5. Parse response (without validation)\n const parsedTags = MotivationParsers.parseTags(response);\n\n // 6. Validate offsets and add category\n return MotivationParsers.validateTagOffsets(parsedTags, content, category);\n }\n\n /**\n * Load resource content from representation store\n * Helper method used by all detection methods\n *\n * @param resourceId - The resource ID to load\n * @param config - Environment configuration\n * @returns Resource content as string, or null if not available\n */\n private static async loadResourceContent(\n resourceId: ResourceId,\n config: EnvironmentConfig\n ): Promise<string | null> {\n const resource = await ResourceContext.getResourceMetadata(resourceId, config);\n if (!resource) return null;\n\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep) return null;\n\n // Only process text content\n const baseMediaType = primaryRep.mediaType?.split(';')[0]?.trim() || '';\n if (baseMediaType !== 'text/plain' && baseMediaType !== 'text/markdown') {\n return null;\n }\n\n if (!primaryRep.checksum || !primaryRep.mediaType) return null;\n\n const basePath = config.services.filesystem!.path;\n const projectRoot = config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n return decodeRepresentation(contentBuffer, primaryRep.mediaType);\n }\n}\n","/**\n * Comment Detection Worker\n *\n * Processes comment-detection jobs: runs AI inference to identify passages\n * that would benefit from explanatory comments and creates comment annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, CommentDetectionJob, JobQueue, RunningJob, CommentDetectionParams, CommentDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { CommentMatch } from '@semiont/inference';\n\nexport class CommentDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'CommentDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'comment-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'comment-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processCommentDetectionJob(job as RunningJob<CommentDetectionParams, CommentDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'comment-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const cdJob = job as RunningJob<CommentDetectionParams, CommentDetectionProgress>;\n\n const baseEvent = {\n resourceId: cdJob.params.resourceId,\n userId: cdJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = cdJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n progress: cdJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'comment-detection') {\n const cdJob = job as CommentDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: cdJob.params.resourceId,\n userId: cdJob.metadata.userId,\n version: 1,\n payload: {\n jobId: cdJob.metadata.id,\n jobType: cdJob.metadata.type,\n error: 'Comment detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processCommentDetectionJob(job: RunningJob<CommentDetectionParams, CommentDetectionProgress>): Promise<void> {\n console.log(`[CommentDetectionWorker] Processing comment detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n let updatedJob: RunningJob<CommentDetectionParams, CommentDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text and generating comments...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Use AI to detect passages needing comments\n const comments = await AnnotationDetection.detectComments(\n job.params.resourceId,\n this.config,\n job.params.instructions,\n job.params.tone,\n job.params.density\n );\n\n console.log(`[CommentDetectionWorker] Found ${comments.length} comments to create`);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${comments.length} annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Create annotations for each comment\n let created = 0;\n for (const comment of comments) {\n try {\n await this.createCommentAnnotation(job.params.resourceId, job.metadata.userId, comment);\n created++;\n } catch (error) {\n console.error(`[CommentDetectionWorker] Failed to create comment:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} comments`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[CommentDetectionWorker] ✅ Created ${created}/${comments.length} comments`);\n }\n\n private async createCommentAnnotation(\n resourceId: ResourceId,\n userId_: string,\n comment: CommentMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n const annotationId = generateAnnotationId(backendUrl);\n\n // Create W3C-compliant annotation with motivation: \"commenting\"\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n type: 'Annotation' as const,\n id: annotationId,\n motivation: 'commenting' as const,\n target: {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: comment.start,\n end: comment.end\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: comment.exact,\n prefix: comment.prefix || '',\n suffix: comment.suffix || ''\n }\n ]\n },\n body: [\n {\n type: 'TextualBody' as const,\n value: comment.comment,\n purpose: 'commenting' as const,\n format: 'text/plain',\n language: 'en'\n }\n ]\n };\n\n // Append annotation.added event to Event Store\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(userId_),\n version: 1,\n payload: {\n annotation\n }\n });\n\n console.log(`[CommentDetectionWorker] Created comment annotation ${annotationId} for \"${comment.exact.substring(0, 50)}...\"`);\n }\n}\n","/**\n * Highlight Detection Worker\n *\n * Processes highlight-detection jobs: runs AI inference to find passages\n * that should be highlighted and creates highlight annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, HighlightDetectionJob, JobQueue, RunningJob, HighlightDetectionParams, HighlightDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { HighlightMatch } from '@semiont/inference';\n\nexport class HighlightDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'HighlightDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'highlight-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'highlight-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processHighlightDetectionJob(job as RunningJob<HighlightDetectionParams, HighlightDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'highlight-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const hlJob = job as RunningJob<HighlightDetectionParams, HighlightDetectionProgress>;\n\n const baseEvent = {\n resourceId: hlJob.params.resourceId,\n userId: hlJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = hlJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n progress: hlJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'highlight-detection') {\n const hlJob = job as HighlightDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: hlJob.params.resourceId,\n userId: hlJob.metadata.userId,\n version: 1,\n payload: {\n jobId: hlJob.metadata.id,\n jobType: hlJob.metadata.type,\n error: 'Highlight detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processHighlightDetectionJob(job: RunningJob<HighlightDetectionParams, HighlightDetectionProgress>): Promise<void> {\n console.log(`[HighlightDetectionWorker] Processing highlight detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n let updatedJob: RunningJob<HighlightDetectionParams, HighlightDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Use AI to detect highlights\n const highlights = await AnnotationDetection.detectHighlights(\n job.params.resourceId,\n this.config,\n job.params.instructions,\n job.params.density\n );\n\n console.log(`[HighlightDetectionWorker] Found ${highlights.length} highlights to create`);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${highlights.length} annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Create annotations for each highlight\n let created = 0;\n for (const highlight of highlights) {\n try {\n await this.createHighlightAnnotation(job.params.resourceId, job.metadata.userId, highlight);\n created++;\n } catch (error) {\n console.error(`[HighlightDetectionWorker] Failed to create highlight:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} highlights`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[HighlightDetectionWorker] ✅ Created ${created}/${highlights.length} highlights`);\n }\n\n private async createHighlightAnnotation(\n resourceId: ResourceId,\n creatorUserId: string,\n highlight: HighlightMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) throw new Error('Backend publicURL not configured');\n\n const annotationId = generateAnnotationId(backendUrl);\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n\n // Create W3C annotation with motivation: highlighting\n // Use both TextPositionSelector and TextQuoteSelector (with prefix/suffix for fuzzy anchoring)\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n 'id': annotationId,\n 'motivation': 'highlighting' as const,\n 'creator': userId(creatorUserId),\n 'created': new Date().toISOString(),\n 'target': {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: highlight.start,\n end: highlight.end,\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: highlight.exact,\n ...(highlight.prefix && { prefix: highlight.prefix }),\n ...(highlight.suffix && { suffix: highlight.suffix }),\n },\n ]\n },\n 'body': [] // Empty body for highlights\n };\n\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(creatorUserId),\n version: 1,\n payload: { annotation }\n });\n }\n}\n","/**\n * Assessment Detection Worker\n *\n * Processes assessment-detection jobs: runs AI inference to assess/evaluate\n * passages in the text and creates assessment annotations.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, AssessmentDetectionJob, JobQueue, RunningJob, AssessmentDetectionParams, AssessmentDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { AssessmentMatch } from '@semiont/inference';\n\nexport class AssessmentDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'AssessmentDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'assessment-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'assessment-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processAssessmentDetectionJob(job as RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'assessment-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const assJob = job as RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress>;\n\n const baseEvent = {\n resourceId: assJob.params.resourceId,\n userId: assJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = assJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: assJob.metadata.id,\n jobType: assJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: assJob.metadata.id,\n jobType: assJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: assJob.metadata.id,\n jobType: assJob.metadata.type,\n progress: assJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'assessment-detection') {\n const aJob = job as AssessmentDetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: aJob.params.resourceId,\n userId: aJob.metadata.userId,\n version: 1,\n payload: {\n jobId: aJob.metadata.id,\n jobType: aJob.metadata.type,\n error: 'Assessment detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processAssessmentDetectionJob(job: RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress>): Promise<void> {\n console.log(`[AssessmentDetectionWorker] Processing assessment detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started and start analyzing\n let updatedJob: RunningJob<AssessmentDetectionParams, AssessmentDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 30,\n message: 'Analyzing text...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Use AI to detect assessments\n const assessments = await AnnotationDetection.detectAssessments(\n job.params.resourceId,\n this.config,\n job.params.instructions,\n job.params.tone,\n job.params.density\n );\n\n console.log(`[AssessmentDetectionWorker] Found ${assessments.length} assessments to create`);\n\n // Update progress\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n message: `Creating ${assessments.length} annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Create annotations for each assessment\n let created = 0;\n for (const assessment of assessments) {\n try {\n await this.createAssessmentAnnotation(job.params.resourceId, job.metadata.userId, assessment);\n created++;\n } catch (error) {\n console.error(`[AssessmentDetectionWorker] Failed to create assessment:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n message: `Complete! Created ${created} assessments`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[AssessmentDetectionWorker] ✅ Created ${created}/${assessments.length} assessments`);\n }\n\n private async createAssessmentAnnotation(\n resourceId: ResourceId,\n creatorUserId: string,\n assessment: AssessmentMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) throw new Error('Backend publicURL not configured');\n\n const annotationId = generateAnnotationId(backendUrl);\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n\n // Create W3C annotation with motivation: assessing\n // Use both TextPositionSelector and TextQuoteSelector (with prefix/suffix for fuzzy anchoring)\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n 'id': annotationId,\n 'motivation': 'assessing' as const,\n 'creator': userId(creatorUserId),\n 'created': new Date().toISOString(),\n 'target': {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: assessment.start,\n end: assessment.end,\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: assessment.exact,\n ...(assessment.prefix && { prefix: assessment.prefix }),\n ...(assessment.suffix && { suffix: assessment.suffix }),\n },\n ]\n },\n 'body': {\n type: 'TextualBody' as const,\n value: assessment.assessment,\n format: 'text/plain'\n }\n };\n\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(creatorUserId),\n version: 1,\n payload: { annotation }\n });\n }\n}\n","/**\n * Tag Detection Worker\n *\n * Processes tag-detection jobs: runs AI inference to identify passages\n * serving specific structural roles (IRAC, IMRAD, Toulmin, etc.) and\n * creates tag annotations with dual-body structure.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, TagDetectionJob, JobQueue, RunningJob, TagDetectionParams, TagDetectionProgress } from '@semiont/jobs';\nimport { ResourceContext, AnnotationDetection } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport { getTagSchema } from '@semiont/ontology';\nimport type { EnvironmentConfig, ResourceId } from '@semiont/core';\nimport { userId } from '@semiont/core';\nimport type { TagMatch } from '@semiont/inference';\n\nexport class TagDetectionWorker extends JobWorker {\n private isFirstProgress = true;\n\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'TagDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'tag-detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'tag-detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n // Reset progress tracking\n this.isFirstProgress = true;\n await this.processTagDetectionJob(job as RunningJob<TagDetectionParams, TagDetectionProgress>);\n }\n\n /**\n * Override updateJobProgress to emit events to Event Store\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update filesystem\n await super.updateJobProgress(job);\n\n if (job.metadata.type !== 'tag-detection') return;\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const tdJob = job as RunningJob<TagDetectionParams, TagDetectionProgress>;\n\n const baseEvent = {\n resourceId: tdJob.params.resourceId,\n userId: tdJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is completion (100% and has result)\n const isComplete = tdJob.progress.percentage === 100;\n\n if (this.isFirstProgress) {\n // First progress update - emit job.started\n this.isFirstProgress = false;\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n },\n });\n } else if (isComplete) {\n // Final update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n // Note: result would come from job.result, but that's handled by base class\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n progress: tdJob.progress,\n },\n });\n }\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'tag-detection') {\n const tdJob = job as TagDetectionJob;\n\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: tdJob.params.resourceId,\n userId: tdJob.metadata.userId,\n version: 1,\n payload: {\n jobId: tdJob.metadata.id,\n jobType: tdJob.metadata.type,\n error: 'Tag detection failed. Please try again later.',\n },\n });\n }\n }\n\n private async processTagDetectionJob(job: RunningJob<TagDetectionParams, TagDetectionProgress>): Promise<void> {\n console.log(`[TagDetectionWorker] Processing tag detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n\n // Validate schema\n const schema = getTagSchema(job.params.schemaId);\n if (!schema) {\n throw new Error(`Invalid tag schema: ${job.params.schemaId}`);\n }\n\n // Validate categories\n for (const category of job.params.categories) {\n if (!schema.tags.some(t => t.name === category)) {\n throw new Error(`Invalid category \"${category}\" for schema ${job.params.schemaId}`);\n }\n }\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n // Emit job.started\n let updatedJob: RunningJob<TagDetectionParams, TagDetectionProgress> = {\n ...job,\n progress: {\n stage: 'analyzing',\n percentage: 10,\n processedCategories: 0,\n totalCategories: job.params.categories.length,\n message: 'Loading resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Process each category separately\n const allTags: TagMatch[] = [];\n const byCategory: Record<string, number> = {};\n\n for (let i = 0; i < job.params.categories.length; i++) {\n const category = job.params.categories[i]!; // Safe: i < length check guarantees element exists\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'analyzing',\n percentage: 10 + Math.floor((i / job.params.categories.length) * 50),\n currentCategory: category,\n processedCategories: i + 1,\n totalCategories: job.params.categories.length,\n message: `Analyzing ${category}...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Detect tags for this category\n const tags = await AnnotationDetection.detectTags(\n job.params.resourceId,\n this.config,\n job.params.schemaId,\n category\n );\n console.log(`[TagDetectionWorker] Found ${tags.length} tags for category \"${category}\"`);\n\n allTags.push(...tags);\n byCategory[category] = tags.length;\n }\n\n // Create annotations\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 60,\n processedCategories: job.params.categories.length,\n totalCategories: job.params.categories.length,\n message: `Creating ${allTags.length} tag annotations...`\n }\n };\n await this.updateJobProgress(updatedJob);\n\n let created = 0;\n for (const tag of allTags) {\n try {\n await this.createTagAnnotation(job.params.resourceId, job.metadata.userId, job.params.schemaId, tag);\n created++;\n } catch (error) {\n console.error(`[TagDetectionWorker] Failed to create tag:`, error);\n }\n }\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 100,\n processedCategories: job.params.categories.length,\n totalCategories: job.params.categories.length,\n message: `Complete! Created ${created} tags`\n }\n };\n\n await this.updateJobProgress(updatedJob);\n console.log(`[TagDetectionWorker] ✅ Created ${created}/${allTags.length} tags across ${job.params.categories.length} categories`);\n }\n\n private async createTagAnnotation(\n resourceId: ResourceId,\n userId_: string,\n schemaId: string,\n tag: TagMatch\n ): Promise<void> {\n const backendUrl = this.config.services.backend?.publicURL;\n\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n\n const resourceUri = resourceIdToURI(resourceId, backendUrl);\n const annotationId = generateAnnotationId(backendUrl);\n\n // Create W3C-compliant annotation with dual-body structure:\n // 1. purpose: \"tagging\" with category value\n // 2. purpose: \"classifying\" with schema ID\n const annotation = {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n type: 'Annotation' as const,\n id: annotationId,\n motivation: 'tagging' as const,\n target: {\n type: 'SpecificResource' as const,\n source: resourceUri,\n selector: [\n {\n type: 'TextPositionSelector' as const,\n start: tag.start,\n end: tag.end\n },\n {\n type: 'TextQuoteSelector' as const,\n exact: tag.exact,\n prefix: tag.prefix || '',\n suffix: tag.suffix || ''\n }\n ]\n },\n body: [\n {\n type: 'TextualBody' as const,\n value: tag.category,\n purpose: 'tagging' as const,\n format: 'text/plain',\n language: 'en'\n },\n {\n type: 'TextualBody' as const,\n value: schemaId,\n purpose: 'classifying' as const,\n format: 'text/plain'\n }\n ]\n };\n\n // Append annotation.added event to Event Store\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId,\n userId: userId(userId_),\n version: 1,\n payload: {\n annotation\n }\n });\n\n console.log(`[TagDetectionWorker] Created tag annotation ${annotationId} for \"${tag.category}\": \"${tag.exact.substring(0, 50)}...\"`);\n }\n}\n","/**\n * Reference Detection Worker\n *\n * Processes detection jobs: runs AI inference to find entities in resources\n * and emits reference.created events for each detected entity.\n *\n * This worker is INDEPENDENT of HTTP clients - it just processes jobs and emits events.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, DetectionJob, JobQueue, RunningJob, DetectionParams, DetectionProgress } from '@semiont/jobs';\nimport { ResourceContext } from '../..';\nimport { EventStore, generateAnnotationId } from '@semiont/event-sourcing';\nimport { resourceIdToURI } from '@semiont/core';\nimport type { EnvironmentConfig } from '@semiont/core';\nimport {\n type components,\n getPrimaryRepresentation,\n decodeRepresentation,\n validateAndCorrectOffsets,\n} from '@semiont/api-client';\nimport { extractEntities } from '@semiont/inference';\nimport { FilesystemRepresentationStore } from '@semiont/content';\n\ntype ResourceDescriptor = components['schemas']['ResourceDescriptor'];\n\nexport interface DetectedAnnotation {\n annotation: {\n selector: {\n start: number;\n end: number;\n exact: string;\n prefix?: string;\n suffix?: string;\n };\n entityTypes: string[];\n };\n}\n\nexport class ReferenceDetectionWorker extends JobWorker {\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'ReferenceDetectionWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'detection';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'detection') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n await this.processDetectionJob(job as RunningJob<DetectionParams, DetectionProgress>);\n }\n\n /**\n * Detect entity references in resource using AI\n * Self-contained implementation for reference detection\n *\n * Public for testing charset handling - see entity-detection-charset.test.ts\n */\n public async detectReferences(\n resource: ResourceDescriptor,\n entityTypes: string[],\n includeDescriptiveReferences: boolean = false\n ): Promise<DetectedAnnotation[]> {\n console.log(`Detecting entities of types: ${entityTypes.join(', ')}${includeDescriptiveReferences ? ' (including descriptive references)' : ''}`);\n\n const detectedAnnotations: DetectedAnnotation[] = [];\n\n // Get primary representation\n const primaryRep = getPrimaryRepresentation(resource);\n if (!primaryRep) return detectedAnnotations;\n\n // Only process text content (check base media type, ignoring charset parameters)\n const mediaType = primaryRep.mediaType;\n const baseMediaType = mediaType?.split(';')[0]?.trim() || '';\n if (baseMediaType === 'text/plain' || baseMediaType === 'text/markdown') {\n // Load content from representation store using content-addressed lookup\n if (!primaryRep.checksum || !primaryRep.mediaType) return detectedAnnotations;\n\n const basePath = this.config.services.filesystem!.path;\n const projectRoot = this.config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n const contentBuffer = await repStore.retrieve(primaryRep.checksum, primaryRep.mediaType);\n const content = decodeRepresentation(contentBuffer, primaryRep.mediaType);\n\n // Use AI to extract entities (with optional anaphoric/cataphoric references)\n const extractedEntities = await extractEntities(content, entityTypes, this.config, includeDescriptiveReferences);\n\n // Validate and correct AI's offsets, then extract proper context\n // AI sometimes returns offsets that don't match the actual text position\n for (const entity of extractedEntities) {\n try {\n const validated = validateAndCorrectOffsets(\n content,\n entity.startOffset,\n entity.endOffset,\n entity.exact\n );\n\n const annotation: DetectedAnnotation = {\n annotation: {\n selector: {\n start: validated.start,\n end: validated.end,\n exact: validated.exact,\n prefix: validated.prefix,\n suffix: validated.suffix,\n },\n entityTypes: [entity.entityType],\n },\n };\n detectedAnnotations.push(annotation);\n } catch (error) {\n console.warn(`[ReferenceDetectionWorker] Skipping invalid entity \"${entity.exact}\":`, error);\n // Skip this entity - AI hallucinated text that doesn't exist\n }\n }\n }\n\n return detectedAnnotations;\n }\n\n private async processDetectionJob(job: RunningJob<DetectionParams, DetectionProgress>): Promise<void> {\n console.log(`[ReferenceDetectionWorker] Processing detection for resource ${job.params.resourceId} (job: ${job.metadata.id})`);\n console.log(`[ReferenceDetectionWorker] 🔍 Entity types: ${job.params.entityTypes.join(', ')}`);\n\n // Fetch resource content\n const resource = await ResourceContext.getResourceMetadata(job.params.resourceId, this.config);\n\n if (!resource) {\n throw new Error(`Resource ${job.params.resourceId} not found`);\n }\n\n let totalFound = 0;\n let totalEmitted = 0;\n let totalErrors = 0;\n\n // Create updated job with initial progress\n let updatedJob: RunningJob<DetectionParams, DetectionProgress> = {\n ...job,\n progress: {\n totalEntityTypes: job.params.entityTypes.length,\n processedEntityTypes: 0,\n entitiesFound: 0,\n entitiesEmitted: 0\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Process each entity type\n for (let i = 0; i < job.params.entityTypes.length; i++) {\n const entityType = job.params.entityTypes[i];\n\n if (!entityType) continue;\n\n console.log(`[ReferenceDetectionWorker] 🤖 [${i + 1}/${job.params.entityTypes.length}] Detecting ${entityType}...`);\n\n // Detect entities using AI (loads content from filesystem internally)\n const detectedAnnotations = await this.detectReferences(resource, [entityType], job.params.includeDescriptiveReferences);\n\n totalFound += detectedAnnotations.length;\n console.log(`[ReferenceDetectionWorker] ✅ Found ${detectedAnnotations.length} ${entityType} entities`);\n\n // Emit events for each detected entity\n // This happens INDEPENDENT of any HTTP client!\n for (let idx = 0; idx < detectedAnnotations.length; idx++) {\n const detected = detectedAnnotations[idx];\n\n if (!detected) {\n console.warn(`[ReferenceDetectionWorker] Skipping undefined entity at index ${idx}`);\n continue;\n }\n\n let referenceId: string;\n try {\n const backendUrl = this.config.services.backend?.publicURL;\n if (!backendUrl) {\n throw new Error('Backend publicURL not configured');\n }\n referenceId = generateAnnotationId(backendUrl);\n } catch (error) {\n console.error(`[ReferenceDetectionWorker] Failed to generate annotation ID:`, error);\n throw new Error('Configuration error: Backend publicURL not set');\n }\n\n try {\n await this.eventStore.appendEvent({\n type: 'annotation.added',\n resourceId: job.params.resourceId,\n userId: job.metadata.userId,\n version: 1,\n payload: {\n annotation: {\n '@context': 'http://www.w3.org/ns/anno.jsonld' as const,\n 'type': 'Annotation' as const,\n id: referenceId,\n motivation: 'linking' as const,\n target: {\n source: resourceIdToURI(job.params.resourceId, this.config.services.backend!.publicURL), // Convert to full URI\n selector: [\n {\n type: 'TextPositionSelector',\n start: detected.annotation.selector.start,\n end: detected.annotation.selector.end,\n },\n {\n type: 'TextQuoteSelector',\n exact: detected.annotation.selector.exact,\n ...(detected.annotation.selector.prefix && { prefix: detected.annotation.selector.prefix }),\n ...(detected.annotation.selector.suffix && { suffix: detected.annotation.selector.suffix }),\n },\n ],\n },\n body: (detected.annotation.entityTypes || []).map(et => ({\n type: 'TextualBody' as const,\n value: et,\n purpose: 'tagging' as const,\n })),\n modified: new Date().toISOString(),\n },\n },\n });\n\n totalEmitted++;\n\n if ((idx + 1) % 10 === 0 || idx === detectedAnnotations.length - 1) {\n console.log(`[ReferenceDetectionWorker] 📤 Emitted ${idx + 1}/${detectedAnnotations.length} events for ${entityType}`);\n }\n\n } catch (error) {\n totalErrors++;\n console.error(`[ReferenceDetectionWorker] ❌ Failed to emit event for ${referenceId}:`, error);\n // Continue processing other entities even if one fails\n }\n }\n\n console.log(`[ReferenceDetectionWorker] ✅ Completed ${entityType}: ${detectedAnnotations.length} found, ${detectedAnnotations.length - (totalErrors - (totalFound - totalEmitted))} emitted`);\n\n // Update progress after processing this entity type\n updatedJob = {\n ...updatedJob,\n progress: {\n totalEntityTypes: job.params.entityTypes.length,\n processedEntityTypes: i + 1,\n currentEntityType: entityType,\n entitiesFound: totalFound,\n entitiesEmitted: totalEmitted\n }\n };\n await this.updateJobProgress(updatedJob);\n }\n\n console.log(`[ReferenceDetectionWorker] ✅ Detection complete: ${totalFound} entities found, ${totalEmitted} events emitted, ${totalErrors} errors`);\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n }\n\n protected override async handleJobFailure(job: AnyJob, error: any): Promise<void> {\n // Call parent to handle the failure logic\n await super.handleJobFailure(job, error);\n\n // If job permanently failed, emit job.failed event\n if (job.status === 'failed' && job.metadata.type === 'detection') {\n // Type narrowing: job is FailedJob<DetectionParams>\n const detJob = job as DetectionJob;\n\n // Log the full error details to backend logs (already logged by parent)\n // Send generic error message to frontend\n await this.eventStore.appendEvent({\n type: 'job.failed',\n resourceId: detJob.params.resourceId,\n userId: detJob.metadata.userId,\n version: 1,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n error: 'Entity detection failed. Please try again later.',\n },\n });\n }\n }\n\n /**\n * Update job progress and emit events to Event Store\n * Overrides base class to also emit job progress events\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update job queue\n await super.updateJobProgress(job);\n\n // Emit events for detection jobs\n if (job.metadata.type !== 'detection') {\n return;\n }\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const detJob = job as RunningJob<DetectionParams, DetectionProgress>;\n\n const baseEvent = {\n resourceId: detJob.params.resourceId,\n userId: detJob.metadata.userId,\n version: 1,\n };\n\n // Determine if this is the first progress update (job.started)\n const isFirstUpdate = detJob.progress.processedEntityTypes === 0;\n\n // Determine if this is the final update (job.completed)\n const isFinalUpdate =\n detJob.progress.processedEntityTypes === detJob.progress.totalEntityTypes &&\n detJob.progress.totalEntityTypes > 0;\n\n if (isFirstUpdate) {\n // First progress update - emit job.started\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n totalSteps: detJob.params.entityTypes.length,\n },\n });\n } else if (isFinalUpdate) {\n // Final progress update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n foundCount: detJob.progress.entitiesFound,\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n const percentage = Math.round((detJob.progress.processedEntityTypes / detJob.progress.totalEntityTypes) * 100);\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: detJob.metadata.id,\n jobType: detJob.metadata.type,\n percentage,\n currentStep: detJob.progress.currentEntityType,\n processedSteps: detJob.progress.processedEntityTypes,\n totalSteps: detJob.progress.totalEntityTypes,\n foundCount: detJob.progress.entitiesFound,\n },\n });\n }\n }\n}\n","/**\n * Generation Worker\n *\n * Processes generation jobs: runs AI inference to generate new resources\n * and emits resource.created and annotation.body.updated events.\n *\n * This worker is INDEPENDENT of HTTP clients - it just processes jobs and emits events.\n */\n\nimport { JobWorker } from '@semiont/jobs';\nimport type { AnyJob, JobQueue, RunningJob, GenerationParams, GenerationProgress } from '@semiont/jobs';\nimport { FilesystemRepresentationStore } from '@semiont/content';\nimport { ResourceContext } from '../..';\nimport { generateResourceFromTopic } from '@semiont/inference';\nimport {\n getTargetSelector,\n getExactText,\n resourceUri,\n annotationUri,\n} from '@semiont/api-client';\nimport { getEntityTypes } from '@semiont/ontology';\nimport {\n CREATION_METHODS,\n generateUuid,\n type BodyOperation,\n resourceId,\n annotationId,\n} from '@semiont/core';\nimport { EventStore } from '@semiont/event-sourcing';\nimport type { EnvironmentConfig } from '@semiont/core';\n\nexport class GenerationWorker extends JobWorker {\n constructor(\n jobQueue: JobQueue,\n private config: EnvironmentConfig,\n private eventStore: EventStore\n ) {\n super(jobQueue);\n }\n\n protected getWorkerName(): string {\n return 'GenerationWorker';\n }\n\n protected canProcessJob(job: AnyJob): boolean {\n return job.metadata.type === 'generation';\n }\n\n protected async executeJob(job: AnyJob): Promise<void> {\n if (job.metadata.type !== 'generation') {\n throw new Error(`Invalid job type: ${job.metadata.type}`);\n }\n\n // Type guard: job must be running to execute\n if (job.status !== 'running') {\n throw new Error(`Job must be in running state to execute, got: ${job.status}`);\n }\n\n await this.processGenerationJob(job as RunningJob<GenerationParams, GenerationProgress>);\n }\n\n private async processGenerationJob(job: RunningJob<GenerationParams, GenerationProgress>): Promise<void> {\n console.log(`[GenerationWorker] Processing generation for reference ${job.params.referenceId} (job: ${job.metadata.id})`);\n\n const basePath = this.config.services.filesystem!.path;\n const projectRoot = this.config._metadata?.projectRoot;\n const repStore = new FilesystemRepresentationStore({ basePath }, projectRoot);\n\n // Update progress: fetching\n let updatedJob: RunningJob<GenerationParams, GenerationProgress> = {\n ...job,\n progress: {\n stage: 'fetching',\n percentage: 20,\n message: 'Fetching source resource...'\n }\n };\n console.log(`[GenerationWorker] 📥 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Fetch annotation from view storage\n // TODO: Once AnnotationContext is consolidated, use it here\n const { FilesystemViewStorage } = await import('@semiont/event-sourcing');\n const viewStorage = new FilesystemViewStorage(basePath, projectRoot);\n const view = await viewStorage.get(job.params.sourceResourceId);\n if (!view) {\n throw new Error(`Resource ${job.params.sourceResourceId} not found`);\n }\n const projection = view.annotations;\n\n // Construct full annotation URI for comparison\n const expectedAnnotationUri = `${this.config.services.backend!.publicURL}/annotations/${job.params.referenceId}`;\n const annotation = projection.annotations.find((a: any) =>\n a.id === expectedAnnotationUri && a.motivation === 'linking'\n );\n\n if (!annotation) {\n throw new Error(`Annotation ${job.params.referenceId} not found in resource ${job.params.sourceResourceId}`);\n }\n\n const sourceResource = await ResourceContext.getResourceMetadata(job.params.sourceResourceId, this.config);\n if (!sourceResource) {\n throw new Error(`Source resource ${job.params.sourceResourceId} not found`);\n }\n\n // Determine resource name\n const targetSelector = getTargetSelector(annotation.target);\n const resourceName = job.params.title || (targetSelector ? getExactText(targetSelector) : '') || 'New Resource';\n console.log(`[GenerationWorker] Generating resource: \"${resourceName}\"`);\n\n // Verify context is provided (required for generation)\n if (!job.params.context) {\n throw new Error('Generation context is required but was not provided in job');\n }\n console.log(`[GenerationWorker] Using pre-fetched context: ${job.params.context.sourceContext?.before?.length || 0} chars before, ${job.params.context.sourceContext?.selected?.length || 0} chars selected, ${job.params.context.sourceContext?.after?.length || 0} chars after`);\n\n // Update progress: generating (skip fetching context since it's already in job)\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'generating',\n percentage: 40,\n message: 'Creating content with AI...'\n }\n };\n console.log(`[GenerationWorker] 🤖 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Generate content using AI with context from job\n const prompt = job.params.prompt || `Create a comprehensive resource about \"${resourceName}\"`;\n // Extract entity types from annotation body\n const annotationEntityTypes = getEntityTypes({ body: annotation.body });\n\n const generatedContent = await generateResourceFromTopic(\n resourceName,\n job.params.entityTypes || annotationEntityTypes,\n this.config,\n prompt,\n job.params.language,\n job.params.context, // NEW - context from job (passed from modal)\n job.params.temperature, // NEW - from job\n job.params.maxTokens // NEW - from job\n );\n\n console.log(`[GenerationWorker] ✅ Generated ${generatedContent.content.length} bytes of content`);\n\n // Update progress: creating\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'generating',\n percentage: 70,\n message: 'Content ready, creating resource...'\n }\n };\n await this.updateJobProgress(updatedJob);\n\n // Generate resource ID\n const rId = resourceId(generateUuid());\n\n // Update progress: creating\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'creating',\n percentage: 85,\n message: 'Saving resource...'\n }\n };\n console.log(`[GenerationWorker] 💾 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Save content to RepresentationStore\n const storedRep = await repStore.store(Buffer.from(generatedContent.content), {\n mediaType: 'text/markdown',\n rel: 'original',\n });\n console.log(`[GenerationWorker] ✅ Saved resource representation to filesystem: ${rId}`);\n\n // Emit resource.created event\n await this.eventStore.appendEvent({\n type: 'resource.created',\n resourceId: rId,\n userId: job.metadata.userId,\n version: 1,\n payload: {\n name: resourceName,\n format: 'text/markdown',\n contentChecksum: storedRep.checksum,\n creationMethod: CREATION_METHODS.GENERATED,\n entityTypes: job.params.entityTypes || annotationEntityTypes,\n language: job.params.language,\n isDraft: true,\n generatedFrom: job.params.referenceId,\n generationPrompt: undefined, // Could be added if we track the prompt\n },\n });\n console.log(`[GenerationWorker] Emitted resource.created event for ${rId}`);\n\n // Update progress: linking\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'linking',\n percentage: 95,\n message: 'Linking reference...',\n resultResourceId: rId // Store for job.completed event\n }\n };\n console.log(`[GenerationWorker] 🔗 ${updatedJob.progress.message}`);\n await this.updateJobProgress(updatedJob);\n\n // Emit annotation.body.updated event to link the annotation to the new resource\n // Build full resource URI for the annotation body\n const newResourceUri = resourceUri(`${this.config.services.backend!.publicURL}/resources/${rId}`);\n\n const operations: BodyOperation[] = [{\n op: 'add',\n item: {\n type: 'SpecificResource',\n source: newResourceUri,\n purpose: 'linking',\n },\n }];\n\n // Extract annotation ID from full URI (format: http://host/annotations/{id})\n const annotationIdSegment = job.params.referenceId.split('/').pop()!;\n\n await this.eventStore.appendEvent({\n type: 'annotation.body.updated',\n resourceId: job.params.sourceResourceId,\n userId: job.metadata.userId,\n version: 1,\n payload: {\n annotationId: annotationId(annotationIdSegment),\n operations,\n },\n });\n console.log(`[GenerationWorker] ✅ Emitted annotation.body.updated event linking ${job.params.referenceId} → ${rId}`);\n\n // Note: JobWorker base class will create the CompleteJob with result\n // We don't set job.result here - that's handled by the base class\n\n updatedJob = {\n ...updatedJob,\n progress: {\n stage: 'linking',\n percentage: 100,\n message: 'Complete!',\n resultResourceId: rId // Store for job.completed event\n }\n };\n await this.updateJobProgress(updatedJob);\n\n console.log(`[GenerationWorker] ✅ Generation complete: created resource ${rId}`);\n }\n\n /**\n * Update job progress and emit events to Event Store\n * Overrides base class to also emit job progress events\n */\n protected override async updateJobProgress(job: AnyJob): Promise<void> {\n // Call parent to update job queue\n await super.updateJobProgress(job);\n\n // Emit events for generation jobs\n if (job.metadata.type !== 'generation') {\n return;\n }\n\n // Type guard: only running jobs have progress\n if (job.status !== 'running') {\n return;\n }\n\n const genJob = job as RunningJob<GenerationParams, GenerationProgress>;\n\n const baseEvent = {\n resourceId: genJob.params.sourceResourceId,\n userId: genJob.metadata.userId,\n version: 1,\n };\n\n // Emit appropriate event based on progress stage\n if (genJob.progress.stage === 'fetching' && genJob.progress.percentage === 20) {\n // First progress update - emit job.started\n await this.eventStore.appendEvent({\n type: 'job.started',\n ...baseEvent,\n payload: {\n jobId: genJob.metadata.id,\n jobType: genJob.metadata.type,\n totalSteps: 5, // fetching, generating, creating, linking, complete\n },\n });\n } else if (genJob.progress.stage === 'linking' && genJob.progress.percentage === 100) {\n // Final progress update - emit job.completed\n await this.eventStore.appendEvent({\n type: 'job.completed',\n ...baseEvent,\n payload: {\n jobId: genJob.metadata.id,\n jobType: genJob.metadata.type,\n resultResourceId: genJob.progress.resultResourceId,\n annotationUri: annotationUri(`${this.config.services.backend!.publicURL}/annotations/${genJob.params.referenceId}`),\n },\n });\n } else {\n // Intermediate progress - emit job.progress\n await this.eventStore.appendEvent({\n type: 'job.progress',\n ...baseEvent,\n payload: {\n jobId: genJob.metadata.id,\n jobType: genJob.metadata.type,\n currentStep: genJob.progress.stage,\n percentage: genJob.progress.percentage,\n message: genJob.progress.message,\n },\n });\n }\n }\n}\n","// @semiont/make-meaning - Making meaning from resources\n// Transforms raw resources into meaningful, interconnected knowledge\n\n// Context assembly exports\nexport { ResourceContext } from './resource-context';\nexport type { ListResourcesFilters } from './resource-context';\nexport { AnnotationContext } from './annotation-context';\nexport type { BuildContextOptions } from './annotation-context';\nexport { GraphContext } from './graph-context';\n\n// Detection exports\nexport { AnnotationDetection } from './annotation-detection';\n\n// Re-export match types from @semiont/inference for convenience\nexport type {\n CommentMatch,\n HighlightMatch,\n AssessmentMatch,\n TagMatch,\n} from '@semiont/inference';\n\n// Job workers\nexport { CommentDetectionWorker } from './jobs/workers/comment-detection-worker';\nexport { HighlightDetectionWorker } from './jobs/workers/highlight-detection-worker';\nexport { AssessmentDetectionWorker } from './jobs/workers/assessment-detection-worker';\nexport { TagDetectionWorker } from './jobs/workers/tag-detection-worker';\nexport { ReferenceDetectionWorker } from './jobs/workers/reference-detection-worker';\nexport { GenerationWorker } from './jobs/workers/generation-worker';\n\n// Reasoning exports (future)\n// export { ResourceReasoning } from './resource-reasoning';\n\n// Placeholder for initial build\nexport const PACKAGE_NAME = '@semiont/make-meaning';\nexport const VERSION = 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@semiont/make-meaning",
3
- "version": "0.2.30-build.60",
3
+ "version": "0.2.30-build.62",
4
4
  "type": "module",
5
5
  "description": "Making meaning from resources through context assembly, pattern detection, and relationship reasoning",
6
6
  "main": "./dist/index.js",
@@ -30,7 +30,8 @@
30
30
  "@semiont/content": "*",
31
31
  "@semiont/graph": "*",
32
32
  "@semiont/ontology": "*",
33
- "@semiont/inference": "*"
33
+ "@semiont/inference": "*",
34
+ "@semiont/jobs": "*"
34
35
  },
35
36
  "devDependencies": {
36
37
  "@vitest/coverage-v8": "^2.1.8",