@semiont/core 0.4.18 → 0.4.20

package/README.md

@@ -193,22 +193,36 @@ import { fetchAPI, createFetchAPI } from '@semiont/core';
 const response = await fetchAPI(url, { method: 'POST', body: data });
 ```
 
-### Backend-Specific Annotation Utilities
+### Annotation body matcher
 
-Utilities that work with internal backend types:
+`findBodyItem` locates a body item in an annotation body by identity
+(type + source for `SpecificResource`, type + value for `TextualBody`).
+Used by the `mark:body-updated` event replay path to apply add / remove /
+replace operations.
 
 ```typescript
-import { bodyItemsMatch, findBodyItem } from '@semiont/core';
-
-// Find specific body item in annotation
-const item = findBodyItem(annotation.body, (item) => item.purpose === 'tagging');
-
-// Check if two body items match
-if (bodyItemsMatch(item1, item2)) {
-  // ...
-}
+import { findBodyItem, type BodyItemIdentity } from '@semiont/core';
+
+// Loose match: any body item with this source, regardless of purpose.
+// This is the common case for Semiont's bind/unbind flow.
+const index = findBodyItem(annotation.body, {
+  type: 'SpecificResource',
+  source: 'https://example.com/target',
+});
+
+// Strict match: disambiguate among same-source bodies under different
+// purposes. Needed when an annotation has multiple SpecificResource bodies
+// pointing at the same target under different W3C purposes.
+const linkingIdx = findBodyItem(annotation.body, {
+  type: 'SpecificResource',
+  source: 'https://example.com/target',
+  purpose: 'linking',
+});
 ```
 
+`purpose` is optional in the identity. Omit it to match on identity alone;
+provide it when the caller knows which purpose to target.
+
 ### Backend Internal Types
 
 Types not in the OpenAPI spec:

package/dist/config/node-config-loader.d.ts

@@ -14,6 +14,7 @@ import { E as EnvironmentConfig } from '../config.types-oPv3Ajk-.js';
  *   configDir      — $XDG_CONFIG_HOME/semiont/{name}/  (generated config for managed processes)
  *   dataHome       — $XDG_DATA_HOME/semiont/{name}/   (persistent user data, e.g. database files)
  *   stateDir        — $XDG_STATE_HOME/semiont/{name}/
+ *   embeddingsDir   — stateDir/embeddings/
  *   projectionsDir  — stateDir/projections/
  *   jobsDir         — stateDir/jobs/
  *   backendLogsDir      — stateDir/backend/
@@ -37,6 +38,7 @@ declare class SemiontProject {
     readonly configDir: string;
     readonly dataHome: string;
     readonly stateDir: string;
+    readonly embeddingsDir: string;
     readonly projectionsDir: string;
     readonly jobsDir: string;
     readonly backendLogsDir: string;

package/dist/config/node-config-loader.js

@@ -293,6 +293,7 @@ var SemiontProject = class _SemiontProject {
   dataHome;
   // Ephemeral — state
   stateDir;
+  embeddingsDir;
   projectionsDir;
   jobsDir;
   backendLogsDir;
@@ -322,6 +323,7 @@ name = "${name}"
     this.dataHome = path.join(xdgData, "semiont", this.name);
     const xdgState = process.env.XDG_STATE_HOME || path.join(os.homedir(), ".local", "state");
     this.stateDir = path.join(xdgState, "semiont", this.name);
+    this.embeddingsDir = path.join(this.stateDir, "embeddings");
     this.projectionsDir = path.join(this.stateDir, "projections");
     this.jobsDir = path.join(this.stateDir, "jobs");
     this.backendLogsDir = path.join(this.stateDir, "backend");

package/dist/config/node-config-loader.js.map

@@ -1 +1 @@
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Read .semiont/config  → projectName, site, environments.<env>.* (project base)\n *   2. Read ~/.semiontconfig → defaults, environments.<env>.* (user overrides)\n *   3. Deep-merge: project base ← user overrides (user wins on conflicts)\n *      Any environment name is valid (local, staging, production, custom, ...)\n *   4. Resolve ${VAR} references from process.env\n *   5. Apply inheritance: workers.<name> → workers.default → error\n *   6. Map to EnvironmentConfig shape\n */\n\nimport { parse as parseToml } from 'smol-toml';\nimport type { EnvironmentConfig, OllamaProviderConfig, AnthropicProviderConfig } from './config.types';\nimport type { PlatformType } from './config.types';\n\n/**\n * Deep merge two plain objects. Arrays and primitives in `override` replace those in `base`.\n * Nested objects are merged recursively. `override` takes precedence on conflicts.\n */\nfunction deepMerge<T extends Record<string, unknown>>(base: T, override: Partial<T>): T {\n  const result = { ...base } as Record<string, unknown>;\n  for (const key of Object.keys(override)) {\n    const b = base[key];\n    const o = override[key];\n    if (o !== undefined && o !== null && typeof o === 'object' && !Array.isArray(o) &&\n        b !== undefined && b !== null && typeof b === 'object' && !Array.isArray(b)) {\n      result[key] = deepMerge(b as Record<string, unknown>, o as Record<string, unknown>);\n    } else if (o !== undefined) {\n      result[key] = o;\n    }\n  }\n  return result as T;\n}\n\nfunction resolveEnvVars(obj: unknown, env: Record<string, string | undefined>): unknown {\n  if (typeof obj === 'string') {\n    return obj.replace(/\\$\\{([^}]+)\\}/g, (match, varName) => {\n      if (env[varName] === undefined) {\n        throw new Error(`Environment variable ${varName} is not set (referenced in config as ${match})`);\n      }\n      return env[varName] as string;\n    });\n  }\n  if (Array.isArray(obj)) {\n    return obj.map(item => resolveEnvVars(item, env));\n  }\n  if (obj !== null && typeof obj === 'object') {\n    const resolved: Record<string, unknown> = {};\n    for (const key in obj as Record<string, unknown>) {\n      resolved[key] = resolveEnvVars((obj as Record<string, unknown>)[key], env);\n    }\n    return resolved;\n  }\n  return obj;\n}\n\n// ── Inference config types (mirrored from packages/make-meaning/src/config.ts) ─\n// Kept here to avoid a circular dependency: core cannot import make-meaning.\n\nexport interface InferenceConfig {\n  type: 'anthropic' | 'ollama';\n  model: string;\n  maxTokens?: number;\n  apiKey?: string;\n  endpoint?: string;\n  baseURL?: string;\n}\n\nexport interface ActorInferenceConfig {\n  gatherer?: InferenceConfig;\n  matcher?: InferenceConfig;\n}\n\nexport interface WorkerInferenceConfig {\n  default?: InferenceConfig;\n  'reference-annotation'?: InferenceConfig;\n  'highlight-annotation'?: InferenceConfig;\n  'assessment-annotation'?: InferenceConfig;\n  'comment-annotation'?: InferenceConfig;\n  'tag-annotation'?: InferenceConfig;\n  'generation'?: InferenceConfig;\n}\n\n// ── Types for ~/.semiontconfig ────────────────────────────────────────────────\n\ninterface SemiontConfigFile {\n  user?: {\n    name?: string;\n    email?: string;\n  };\n  defaults?: {\n    environment?: string;\n    platform?: string;\n  };\n  environments?: Record<string, EnvironmentSection>;\n}\n\ninterface GraphSection {\n  platform?: string;\n  type?: string;\n  name?: string;\n  uri?: string;\n  username?: string;\n  password?: string;\n  database?: string;\n  [key: string]: unknown;\n}\n\ninterface InferenceFlatSection {\n  // Flat (single-provider) format: type = \"anthropic\"|\"ollama\" at this level\n  type?: 'anthropic' | 'ollama';\n  platform?: string;\n  model?: string;\n  maxTokens?: number;\n  apiKey?: string;\n  endpoint?: string;\n  baseURL?: string;\n  // Keyed (multi-provider) format: [inference.anthropic] / [inference.ollama]\n  anthropic?: { platform?: string; apiKey?: string; endpoint?: string };\n  ollama?: { platform?: string; baseURL?: string; port?: number };\n}\n\ninterface EnvironmentSection {\n  backend?: {\n    platform?: string;\n    port?: number;\n    publicURL?: string;\n    frontendURL?: string;\n    corsOrigin?: string;\n  };\n  frontend?: {\n    platform?: string;\n    port?: number;\n    publicURL?: string;\n  };\n  site?: {\n    domain?: string;\n    siteName?: string;\n    adminEmail?: string;\n    oauthAllowedDomains?: string[];\n    enableLocalAuth?: boolean;\n  };\n  database?: {\n    platform?: string;\n    image?: string;\n    host?: string;\n    port?: number;\n    name?: string;\n    user?: string;\n    password?: string;\n  };\n  graph?: GraphSection;\n  vectors?: {\n    type?: 'qdrant' | 'memory';\n    host?: string;\n    port?: number;\n    // Legacy: embedding nested under vectors (migrated to top-level)\n    embedding?: {\n      type?: 'voyage' | 'ollama';\n      model?: string;\n      apiKey?: string;\n      baseURL?: string;\n      endpoint?: string;\n    };\n    chunking?: {\n      chunkSize?: number;\n      overlap?: number;\n    };\n  };\n  embedding?: {\n    type?: 'voyage' | 'ollama';\n    model?: string;\n    apiKey?: string;\n    baseURL?: string;\n    endpoint?: string;\n    chunking?: {\n      chunkSize?: number;\n      overlap?: number;\n    };\n  };\n  inference?: InferenceFlatSection;\n  'make-meaning'?: {\n    graph?: Record<string, unknown>;\n    actors?: {\n      gatherer?: { inference?: InferenceConfig };\n      matcher?: { inference?: InferenceConfig };\n    };\n    default?: { inference?: InferenceConfig };\n  };\n  workers?: Record<string, { inference?: InferenceConfig }>;\n  actors?: Record<string, { inference?: InferenceConfig }>;\n  logLevel?: 'error' | 'warn' | 'info' | 'http' | 'debug';\n}\n\n// ── File reader abstraction (same pattern as createConfigLoader) ──────────────\n\nexport type TomlFileReader = {\n  readIfExists: (path: string) => string | null;\n};\n\nfunction requirePlatform(value: string | undefined, serviceName: string): PlatformType {\n  if (!value) {\n    throw new Error(`platform is required for service '${serviceName}' — add 'platform = \"posix\"|\"container\"|\"external\"' to its config section`);\n  }\n  return value as PlatformType;\n}\n\n// ── Main loader function ──────────────────────────────────────────────────────\n\n/**\n * Parse ~/.semiontconfig and .semiont/config and return EnvironmentConfig.\n *\n * @param projectRoot - Path to the project root (contains .semiont/config)\n * @param environment - Environment name (e.g. 'local', 'production')\n * @param globalConfigPath - Path to ~/.semiontconfig (caller resolves ~ expansion)\n * @param reader - File reader abstraction\n * @param env - Environment variables for ${VAR} resolution\n */\nexport function loadTomlConfig(\n  projectRoot: string | null,\n  environment: string,\n  globalConfigPath: string,\n  reader: TomlFileReader,\n  env: Record<string, string | undefined>\n): EnvironmentConfig {\n  // 1. Read project config from .semiont/config (skipped when no project root)\n  const projectConfigContent = projectRoot ? reader.readIfExists(`${projectRoot}/.semiont/config`) : null;\n  let projectName = 'semiont-project';\n  let projectVersion: string | undefined;\n  let projectSite: EnvironmentSection['site'] | undefined;\n  let projectEnvSection: EnvironmentSection = {};\n  if (projectConfigContent) {\n    const projectConfig = parseToml(projectConfigContent) as {\n      project?: { name?: string; version?: string };\n      site?: EnvironmentSection['site'];\n      environments?: Record<string, EnvironmentSection>;\n    };\n    projectName = projectConfig.project?.name ?? projectName;\n    projectVersion = projectConfig.project?.version;\n    projectSite = projectConfig.site;\n    projectEnvSection = projectConfig.environments?.[environment] ?? {};\n  }\n\n  // 2. Read global config (optional — missing config yields empty environments)\n  const globalContent = reader.readIfExists(globalConfigPath);\n  const raw = globalContent ? (parseToml(globalContent) as SemiontConfigFile) : ({} as SemiontConfigFile);\n\n  // 3. Deep-merge: project base + user overrides (user wins on conflicts)\n  const userEnvSection: EnvironmentSection = raw.environments?.[environment] ?? {};\n  const envSection: EnvironmentSection = deepMerge(\n    projectEnvSection as Record<string, unknown>,\n    userEnvSection as Record<string, unknown>\n  ) as EnvironmentSection;\n\n  // 4. Resolve ${VAR} references\n  const resolved = resolveEnvVars(envSection, env) as EnvironmentSection;\n\n  // 5. Build make-meaning actor/worker inference config with inheritance\n  // The flat [inference] section provides defaults (apiKey, maxTokens, endpoint/baseURL).\n  // Actor/worker sections only need to specify type and model; missing fields fall back\n  // to the flat inference section.\n  const flatInference = resolved.inference;\n  const makeMeaningSection = resolved['make-meaning'];\n  const workersSection = resolved.workers ?? {};\n  const actorsSection = resolved.actors ?? {};\n  const defaultWorkerInference = workersSection['default']?.inference;\n  const defaultMakeMeaningInference = makeMeaningSection?.default?.inference;\n\n  function mergeWithFlatInference(specific: InferenceConfig): InferenceConfig {\n    if (!flatInference) return specific;\n    // For keyed sub-sections, inherit credentials from the matching provider sub-section.\n    // For flat (legacy) format, flatInference.type is required to know which fields apply.\n    const providerDefaults: Partial<InferenceConfig> = {};\n    if (specific.type === 'anthropic') {\n      const a = flatInference.anthropic;\n      if (a) {\n        providerDefaults.apiKey = a.apiKey;\n        providerDefaults.endpoint = a.endpoint;\n      } else {\n        if (!flatInference.type) {\n          throw new Error(\n            `[environments.${environment}.inference] is missing 'type'. ` +\n            `Add type = \"anthropic\" or use [inference.anthropic] sub-section.`\n          );\n        }\n        providerDefaults.apiKey = flatInference.apiKey;\n        providerDefaults.endpoint = flatInference.endpoint;\n      }\n    } else if (specific.type === 'ollama') {\n      const o = flatInference.ollama;\n      if (o) {\n        providerDefaults.baseURL = o.baseURL;\n      } else {\n        if (!flatInference.type) {\n          throw new Error(\n            `[environments.${environment}.inference] is missing 'type'. ` +\n            `Add type = \"ollama\" or use [inference.ollama] sub-section.`\n          );\n        }\n        providerDefaults.baseURL = flatInference.baseURL;\n      }\n    }\n    return {\n      maxTokens: flatInference.maxTokens,\n      ...providerDefaults,\n      ...specific,\n    };\n  }\n\n  function resolveActorInference(fromMakeMeaning?: InferenceConfig, fromActors?: InferenceConfig): InferenceConfig | undefined {\n    const base = fromMakeMeaning ?? fromActors ?? defaultMakeMeaningInference;\n    if (!base) return undefined;\n    return mergeWithFlatInference(base);\n  }\n\n  const actors: ActorInferenceConfig = {};\n  const gathererInference = resolveActorInference(\n    makeMeaningSection?.actors?.gatherer?.inference,\n    actorsSection['gatherer']?.inference\n  );\n  if (gathererInference) actors.gatherer = gathererInference;\n\n  const matcherInference = resolveActorInference(\n    makeMeaningSection?.actors?.matcher?.inference,\n    actorsSection['matcher']?.inference\n  );\n  if (matcherInference) actors.matcher = matcherInference;\n\n  const workers: WorkerInferenceConfig = {};\n  const workerTypes = ['reference-annotation', 'highlight-annotation', 'assessment-annotation', 'comment-annotation', 'tag-annotation', 'generation'] as const;\n  if (defaultWorkerInference) {\n    workers.default = mergeWithFlatInference(defaultWorkerInference);\n  }\n  for (const wt of workerTypes) {\n    const specific = workersSection[wt]?.inference;\n    if (specific) {\n      (workers as Record<string, InferenceConfig>)[wt] = mergeWithFlatInference(specific);\n    }\n  }\n\n  // 6. Map to EnvironmentConfig\n  const backend = resolved.backend;\n  const site = resolved.site ?? projectSite;\n  const inferenceSection = resolved.inference;\n\n  // Build inference providers config.\n  // Supports two formats:\n  //   Flat:  [environments.local.inference] type = \"anthropic\"|\"ollama\"  (single provider)\n  //   Keyed: [environments.local.inference.anthropic] / [environments.local.inference.ollama] (multi-provider)\n  let inferenceProviders: EnvironmentConfig['inference'] | undefined;\n  if (inferenceSection) {\n    inferenceProviders = {};\n    // Keyed sub-sections take priority\n    if (inferenceSection.anthropic) {\n      const a = inferenceSection.anthropic;\n      inferenceProviders.anthropic = {\n        platform: requirePlatform(a.platform, 'inference.anthropic'),\n        endpoint: a.endpoint ?? 'https://api.anthropic.com',\n        apiKey: a.apiKey ?? '',\n      } as AnthropicProviderConfig;\n    } else if (inferenceSection.type === 'anthropic') {\n      inferenceProviders.anthropic = {\n        platform: requirePlatform(inferenceSection.platform, 'inference'),\n        endpoint: inferenceSection.endpoint ?? 'https://api.anthropic.com',\n        apiKey: inferenceSection.apiKey ?? '',\n      } as AnthropicProviderConfig;\n    }\n    if (inferenceSection.ollama) {\n      const o = inferenceSection.ollama;\n      inferenceProviders.ollama = {\n        platform: { type: requirePlatform(o.platform, 'inference.ollama') },\n        baseURL: o.baseURL,\n        port: o.baseURL ? undefined : (o.port ?? 11434),\n      } as OllamaProviderConfig;\n    } else if (inferenceSection.type === 'ollama') {\n      inferenceProviders.ollama = {\n        platform: { type: requirePlatform(inferenceSection.platform, 'inference') },\n        baseURL: inferenceSection.baseURL,\n        port: inferenceSection.baseURL ? undefined : 11434,\n      } as OllamaProviderConfig;\n    }\n  }\n\n  // Build top-level workers/actors maps for EnvironmentConfig\n  const topLevelWorkers: EnvironmentConfig['workers'] = {};\n  for (const [name, w] of Object.entries(workersSection)) {\n    if (w.inference) {\n      topLevelWorkers[name] = { inference: { type: w.inference.type, model: w.inference.model } };\n    }\n  }\n  const topLevelActors: EnvironmentConfig['actors'] = {};\n  for (const [name, a] of Object.entries(actorsSection)) {\n    if (a.inference) {\n      topLevelActors[name] = { inference: { type: a.inference.type, model: a.inference.model } };\n    }\n  }\n  // Also include make-meaning actors\n  if (makeMeaningSection?.actors?.gatherer?.inference) {\n    topLevelActors['gatherer'] = { inference: { type: makeMeaningSection.actors.gatherer.inference.type, model: makeMeaningSection.actors.gatherer.inference.model } };\n  }\n  if (makeMeaningSection?.actors?.matcher?.inference) {\n    topLevelActors['matcher'] = { inference: { type: makeMeaningSection.actors.matcher.inference.type, model: makeMeaningSection.actors.matcher.inference.model } };\n  }\n\n  const frontend = resolved.frontend;\n\n  const services: EnvironmentConfig['services'] = {};\n\n  if (backend) {\n    services.backend = {\n      platform: { type: requirePlatform(backend.platform, 'backend') },\n      port: backend.port ?? 4000,\n      publicURL: backend.publicURL ?? `http://localhost:${backend.port ?? 4000}`,\n      corsOrigin: backend.corsOrigin ?? backend.frontendURL ?? 'http://localhost:3000',\n    };\n  }\n\n  if (frontend) {\n    services.frontend = {\n      platform: { type: requirePlatform(frontend.platform, 'frontend') },\n      port: frontend.port ?? 3000,\n      siteName: site?.siteName ?? 'Semiont',\n      publicURL: frontend.publicURL,\n    };\n  }\n\n  if (resolved.graph) {\n    services.graph = {\n      ...resolved.graph,\n      platform: { type: requirePlatform(resolved.graph.platform as string | undefined, 'graph') },\n      type: (resolved.graph.type ?? 'neo4j') as import('./config.types').GraphDatabaseType,\n    } as EnvironmentConfig['services']['graph'];\n  } else if (makeMeaningSection?.graph) {\n    services.graph = makeMeaningSection.graph as EnvironmentConfig['services']['graph'];\n  }\n\n  if (resolved.database) {\n    services.database = {\n      platform: { type: requirePlatform(resolved.database.platform, 'database') },\n      type: 'postgres',\n      image: resolved.database.image,\n      host: resolved.database.host ?? 'localhost',\n      port: resolved.database.port ?? 5432,\n      name: resolved.database.name,\n      user: resolved.database.user,\n      password: resolved.database.password,\n    } as EnvironmentConfig['services']['database'];\n  }\n\n  if (resolved.vectors) {\n    services.vectors = {\n      platform: { type: 'external' as PlatformType },\n      type: (resolved.vectors.type ?? 'qdrant') as 'qdrant' | 'memory',\n      host: resolved.vectors.host,\n      port: resolved.vectors.port ?? 6333,\n    } as EnvironmentConfig['services']['vectors'];\n  }\n\n  // Embedding: top-level takes precedence, fall back to legacy vectors.embedding\n  const embeddingSource = resolved.embedding ?? resolved.vectors?.embedding;\n  if (embeddingSource) {\n    services.embedding = {\n      platform: { type: 'external' as PlatformType },\n      type: embeddingSource.type!,\n      model: embeddingSource.model!,\n      apiKey: embeddingSource.apiKey,\n      baseURL: embeddingSource.baseURL,\n      endpoint: embeddingSource.endpoint,\n      chunking: (resolved.embedding?.chunking ?? resolved.vectors?.chunking) ? {\n        chunkSize: (resolved.embedding?.chunking ?? resolved.vectors?.chunking)?.chunkSize ?? 512,\n        overlap: (resolved.embedding?.chunking ?? resolved.vectors?.chunking)?.overlap ?? 64,\n      } : undefined,\n    } as EnvironmentConfig['services']['embedding'];\n  }\n\n  const config: EnvironmentConfig = {\n    services,\n    ...(inferenceProviders ? { inference: inferenceProviders } : {}),\n    ...(Object.keys(topLevelWorkers).length > 0 ? { workers: topLevelWorkers } : {}),\n    ...(Object.keys(topLevelActors).length > 0 ? { actors: topLevelActors } : {}),\n    site: site ? {\n      domain: site.domain ?? 'localhost',\n      siteName: site.siteName,\n      adminEmail: site.adminEmail,\n      oauthAllowedDomains: site.oauthAllowedDomains as [string, ...string[]] | undefined,\n    } : undefined,\n    logLevel: resolved.logLevel,\n    _metadata: {\n      environment,\n      projectRoot,\n      projectName,\n      projectVersion,\n      ...(Object.keys(actors).length > 0 ? { actors } : {}),\n      ...(Object.keys(workers).length > 0 ? { workers } : {}),\n    },\n  };\n\n  return config;\n}\n\n/**\n * Create a TOML config loader backed by a file reader.\n * Drop-in replacement for createConfigLoader that reads TOML instead of JSON.\n * The caller must resolve globalConfigPath (e.g. expand '~' using process.env.HOME).\n */\nexport function createTomlConfigLoader(\n  reader: TomlFileReader,\n  globalConfigPath: string,\n  env: Record<string, string | undefined>\n) {\n  return (projectRoot: string | null, environment: string): EnvironmentConfig => {\n    return loadTomlConfig(projectRoot, environment, globalConfigPath, reader, env);\n  };\n}\n","import * as fs from 'fs';\nimport * as os from 'os';\nimport * as path from 'path';\nimport { execFileSync } from 'child_process';\n\n/**\n * Represents a Semiont project rooted at a given directory.\n *\n * Computes all paths — durable and ephemeral — once at construction time.\n * XDG environment variables are read here and nowhere else.\n *\n * Durable paths (inside the project root, committed or repo-local):\n *   eventsDir          — .semiont/events/      (system of record, committed)\n *   representationsDir — representations/      (content store, committed)\n *\n * Ephemeral paths (outside the project root, never committed):\n *   configDir      — $XDG_CONFIG_HOME/semiont/{name}/  (generated config for managed processes)\n *   dataHome       — $XDG_DATA_HOME/semiont/{name}/   (persistent user data, e.g. database files)\n *   stateDir        — $XDG_STATE_HOME/semiont/{name}/\n *   projectionsDir  — stateDir/projections/\n *   jobsDir         — stateDir/jobs/\n *   backendLogsDir      — stateDir/backend/\n *   backendAppLogFile   — backendLogsDir/app.log\n *   backendErrorLogFile — backendLogsDir/error.log\n *   runtimeDir      — $XDG_RUNTIME_DIR/semiont/{name}/  (or $TMPDIR fallback)\n *   backendPidFile  — runtimeDir/backend.pid\n *\n * Note: frontend paths are NOT project-scoped. The frontend service is bundled\n * with the CLI and uses fixed XDG paths keyed by \"frontend\", not project name.\n * See apps/cli/src/platforms/posix/handlers/frontend-paths.ts.\n */\nexport class SemiontProject {\n  readonly root: string;\n  readonly name: string;\n\n  /** True if [git] sync = true in .semiont/config. When true, semiont stages\n   *  working-tree and event-log changes in the git index automatically. */\n  readonly gitSync: boolean;\n\n  // Durable\n  readonly eventsDir: string;\n  readonly representationsDir: string;\n\n  // Ephemeral — config (generated config files for managed processes)\n  readonly configDir: string;\n\n  // Ephemeral — data (persistent user data managed by semiont)\n  readonly dataHome: string;\n\n  // Ephemeral — state\n  readonly stateDir: string;\n  readonly projectionsDir: string;\n  readonly jobsDir: string;\n  readonly backendLogsDir: string;\n  readonly backendAppLogFile: string;\n  readonly backendErrorLogFile: string;\n\n  // Ephemeral — runtime\n  readonly runtimeDir: string;\n  readonly backendPidFile: string;\n\n  constructor(projectRoot: string, name?: string) {\n    this.root = projectRoot;\n    if (name !== undefined) {\n      const configPath = path.join(projectRoot, '.semiont', 'config');\n      if (!fs.existsSync(configPath)) {\n        fs.mkdirSync(path.join(projectRoot, '.semiont'), { recursive: true });\n        fs.writeFileSync(configPath, `[project]\\nname = \"${name}\"\\n`);\n      }\n    }\n    this.name = SemiontProject.readName(projectRoot);\n    this.gitSync = SemiontProject.readGitSync(projectRoot);\n\n    this.eventsDir = path.join(projectRoot, '.semiont', 'events');\n    this.representationsDir = path.join(projectRoot, 'representations');\n\n    const xdgConfig = process.env.XDG_CONFIG_HOME || path.join(os.homedir(), '.config');\n    this.configDir = path.join(xdgConfig, 'semiont', this.name);\n\n    const xdgData = process.env.XDG_DATA_HOME || path.join(os.homedir(), '.local', 'share');\n    this.dataHome = path.join(xdgData, 'semiont', this.name);\n\n    const xdgState = process.env.XDG_STATE_HOME || path.join(os.homedir(), '.local', 'state');\n    this.stateDir = path.join(xdgState, 'semiont', this.name);\n    this.projectionsDir = path.join(this.stateDir, 'projections');\n    this.jobsDir = path.join(this.stateDir, 'jobs');\n    this.backendLogsDir = path.join(this.stateDir, 'backend');\n    this.backendAppLogFile = path.join(this.backendLogsDir, 'app.log');\n    this.backendErrorLogFile = path.join(this.backendLogsDir, 'error.log');\n\n    const xdgRuntime = process.env.XDG_RUNTIME_DIR;\n    const runtimeBase = xdgRuntime ?? process.env.TMPDIR ?? '/tmp';\n    this.runtimeDir = path.join(runtimeBase, 'semiont', this.name);\n    this.backendPidFile = path.join(this.runtimeDir, 'backend.pid');\n  }\n\n  /**\n   * Read the current git branch for the project root.\n   * Returns null if the project is not a git repo or git is not available.\n   */\n  gitBranch(): string | null {\n    try {\n      return execFileSync('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {\n        cwd: this.root,\n        encoding: 'utf-8',\n        stdio: ['ignore', 'pipe', 'ignore'],\n      }).trim() || null;\n    } catch {\n      return null;\n    }\n  }\n\n  /**\n   * Delete all ephemeral state for this project (stateDir + runtimeDir).\n   * Does not touch eventsDir or dataDir.\n   */\n  async destroy(): Promise<void> {\n    await Promise.all([\n      fs.promises.rm(this.configDir, { recursive: true, force: true }),\n      fs.promises.rm(this.stateDir, { recursive: true, force: true }),\n      fs.promises.rm(this.runtimeDir, { recursive: true, force: true }),\n    ]);\n  }\n\n  /**\n   * Read [git] sync from .semiont/config.\n   * Defaults to false if the section or key is absent.\n   */\n  private static readGitSync(projectRoot: string): boolean {\n    const configPath = path.join(projectRoot, '.semiont', 'config');\n    if (!fs.existsSync(configPath)) return false;\n    const content = fs.readFileSync(configPath, 'utf-8');\n    let inGitSection = false;\n    for (const line of content.split('\\n')) {\n      const trimmed = line.trim();\n      if (trimmed === '[git]') { inGitSection = true; continue; }\n      if (trimmed.startsWith('[')) { inGitSection = false; continue; }\n      if (inGitSection && trimmed.startsWith('sync') && trimmed.includes('=')) {\n        const value = trimmed.split('=')[1]?.trim();\n        return value === 'true';\n      }\n    }\n    return false;\n  }\n\n  /**\n   * Read the project name from .semiont/config [project] name = \"...\"\n   * Falls back to the directory basename if the config is absent or has no name.\n   */\n  private static readName(projectRoot: string): string {\n    const configPath = path.join(projectRoot, '.semiont', 'config');\n    if (fs.existsSync(configPath)) {\n      const content = fs.readFileSync(configPath, 'utf-8');\n      for (const line of content.split('\\n')) {\n        const trimmed = line.trim();\n        if (trimmed.startsWith('name') && trimmed.includes('=')) {\n          const [, ...rest] = trimmed.split('=');\n          return rest.join('=').trim().replace(/^\"(.*)\"$/, '$1');\n        }\n      }\n    }\n    return path.basename(projectRoot);\n  }\n}\n","import * as fs from 'fs';\nimport * as os from 'os';\nimport * as path from 'path';\nimport { createTomlConfigLoader } from './toml-loader.js';\nimport type { EnvironmentConfig } from './config.types.js';\n\nexport { SemiontProject } from '../project.js';\n\nconst nodeTomlFileReader = {\n  readIfExists: (filePath: string): string | null =>\n    fs.existsSync(filePath) ? fs.readFileSync(filePath, 'utf-8') : null,\n};\n\n/**\n * Load semiont environment config for a Node.js process.\n *\n * Reads ~/.semiontconfig (global) merged with .semiont/config (project-local),\n * then selects the given environment overlay.\n *\n * This is the canonical config loader for any Node.js process. SEMIONT_ENV\n * should be read once at the process entry point and passed as `environment`.\n */\nexport function loadEnvironmentConfig(\n  projectRoot: string,\n  environment: string\n): EnvironmentConfig {\n  const globalConfigPath = path.join(os.homedir(), '.semiontconfig');\n  return createTomlConfigLoader(\n    nodeTomlFileReader,\n    globalConfigPath,\n    process.env\n  )(projectRoot, environment);\n}\n"]}
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Read .semiont/config  → projectName, site, environments.<env>.* (project base)\n *   2. Read ~/.semiontconfig → defaults, environments.<env>.* (user overrides)\n *   3. Deep-merge: project base ← user overrides (user wins on conflicts)\n *      Any environment name is valid (local, staging, production, custom, ...)\n *   4. Resolve ${VAR} references from process.env\n *   5. Apply inheritance: workers.<name> → workers.default → error\n *   6. Map to EnvironmentConfig shape\n */\n\nimport { parse as parseToml } from 'smol-toml';\nimport type { EnvironmentConfig, OllamaProviderConfig, AnthropicProviderConfig } from './config.types';\nimport type { PlatformType } from './config.types';\n\n/**\n * Deep merge two plain objects. Arrays and primitives in `override` replace those in `base`.\n * Nested objects are merged recursively. `override` takes precedence on conflicts.\n */\nfunction deepMerge<T extends Record<string, unknown>>(base: T, override: Partial<T>): T {\n  const result = { ...base } as Record<string, unknown>;\n  for (const key of Object.keys(override)) {\n    const b = base[key];\n    const o = override[key];\n    if (o !== undefined && o !== null && typeof o === 'object' && !Array.isArray(o) &&\n        b !== undefined && b !== null && typeof b === 'object' && !Array.isArray(b)) {\n      result[key] = deepMerge(b as Record<string, unknown>, o as Record<string, unknown>);\n    } else if (o !== undefined) {\n      result[key] = o;\n    }\n  }\n  return result as T;\n}\n\nfunction resolveEnvVars(obj: unknown, env: Record<string, string | undefined>): unknown {\n  if (typeof obj === 'string') {\n    return obj.replace(/\\$\\{([^}]+)\\}/g, (match, varName) => {\n      if (env[varName] === undefined) {\n        throw new Error(`Environment variable ${varName} is not set (referenced in config as ${match})`);\n      }\n      return env[varName] as string;\n    });\n  }\n  if (Array.isArray(obj)) {\n    return obj.map(item => resolveEnvVars(item, env));\n  }\n  if (obj !== null && typeof obj === 'object') {\n    const resolved: Record<string, unknown> = {};\n    for (const key in obj as Record<string, unknown>) {\n      resolved[key] = resolveEnvVars((obj as Record<string, unknown>)[key], env);\n    }\n    return resolved;\n  }\n  return obj;\n}\n\n// ── Inference config types (mirrored from packages/make-meaning/src/config.ts) ─\n// Kept here to avoid a circular dependency: core cannot import make-meaning.\n\nexport interface InferenceConfig {\n  type: 'anthropic' | 'ollama';\n  model: string;\n  maxTokens?: number;\n  apiKey?: string;\n  endpoint?: string;\n  baseURL?: string;\n}\n\nexport interface ActorInferenceConfig {\n  gatherer?: InferenceConfig;\n  matcher?: InferenceConfig;\n}\n\nexport interface WorkerInferenceConfig {\n  default?: InferenceConfig;\n  'reference-annotation'?: InferenceConfig;\n  'highlight-annotation'?: InferenceConfig;\n  'assessment-annotation'?: InferenceConfig;\n  'comment-annotation'?: InferenceConfig;\n  'tag-annotation'?: InferenceConfig;\n  'generation'?: InferenceConfig;\n}\n\n// ── Types for ~/.semiontconfig ────────────────────────────────────────────────\n\ninterface SemiontConfigFile {\n  user?: {\n    name?: string;\n    email?: string;\n  };\n  defaults?: {\n    environment?: string;\n    platform?: string;\n  };\n  environments?: Record<string, EnvironmentSection>;\n}\n\ninterface GraphSection {\n  platform?: string;\n  type?: string;\n  name?: string;\n  uri?: string;\n  username?: string;\n  password?: string;\n  database?: string;\n  [key: string]: unknown;\n}\n\ninterface InferenceFlatSection {\n  // Flat (single-provider) format: type = \"anthropic\"|\"ollama\" at this level\n  type?: 'anthropic' | 'ollama';\n  platform?: string;\n  model?: string;\n  maxTokens?: number;\n  apiKey?: string;\n  endpoint?: string;\n  baseURL?: string;\n  // Keyed (multi-provider) format: [inference.anthropic] / [inference.ollama]\n  anthropic?: { platform?: string; apiKey?: string; endpoint?: string };\n  ollama?: { platform?: string; baseURL?: string; port?: number };\n}\n\ninterface EnvironmentSection {\n  backend?: {\n    platform?: string;\n    port?: number;\n    publicURL?: string;\n    frontendURL?: string;\n    corsOrigin?: string;\n  };\n  frontend?: {\n    platform?: string;\n    port?: number;\n    publicURL?: string;\n  };\n  site?: {\n    domain?: string;\n    siteName?: string;\n    adminEmail?: string;\n    oauthAllowedDomains?: string[];\n    enableLocalAuth?: boolean;\n  };\n  database?: {\n    platform?: string;\n    image?: string;\n    host?: string;\n    port?: number;\n    name?: string;\n    user?: string;\n    password?: string;\n  };\n  graph?: GraphSection;\n  vectors?: {\n    type?: 'qdrant' | 'memory';\n    host?: string;\n    port?: number;\n    // Legacy: embedding nested under vectors (migrated to top-level)\n    embedding?: {\n      type?: 'voyage' | 'ollama';\n      model?: string;\n      apiKey?: string;\n      baseURL?: string;\n      endpoint?: string;\n    };\n    chunking?: {\n      chunkSize?: number;\n      overlap?: number;\n    };\n  };\n  embedding?: {\n    type?: 'voyage' | 'ollama';\n    model?: string;\n    apiKey?: string;\n    baseURL?: string;\n    endpoint?: string;\n    chunking?: {\n      chunkSize?: number;\n      overlap?: number;\n    };\n  };\n  inference?: InferenceFlatSection;\n  'make-meaning'?: {\n    graph?: Record<string, unknown>;\n    actors?: {\n      gatherer?: { inference?: InferenceConfig };\n      matcher?: { inference?: InferenceConfig };\n    };\n    default?: { inference?: InferenceConfig };\n  };\n  workers?: Record<string, { inference?: InferenceConfig }>;\n  actors?: Record<string, { inference?: InferenceConfig }>;\n  logLevel?: 'error' | 'warn' | 'info' | 'http' | 'debug';\n}\n\n// ── File reader abstraction (same pattern as createConfigLoader) ──────────────\n\nexport type TomlFileReader = {\n  readIfExists: (path: string) => string | null;\n};\n\nfunction requirePlatform(value: string | undefined, serviceName: string): PlatformType {\n  if (!value) {\n    throw new Error(`platform is required for service '${serviceName}' — add 'platform = \"posix\"|\"container\"|\"external\"' to its config section`);\n  }\n  return value as PlatformType;\n}\n\n// ── Main loader function ──────────────────────────────────────────────────────\n\n/**\n * Parse ~/.semiontconfig and .semiont/config and return EnvironmentConfig.\n *\n * @param projectRoot - Path to the project root (contains .semiont/config)\n * @param environment - Environment name (e.g. 'local', 'production')\n * @param globalConfigPath - Path to ~/.semiontconfig (caller resolves ~ expansion)\n * @param reader - File reader abstraction\n * @param env - Environment variables for ${VAR} resolution\n */\nexport function loadTomlConfig(\n  projectRoot: string | null,\n  environment: string,\n  globalConfigPath: string,\n  reader: TomlFileReader,\n  env: Record<string, string | undefined>\n): EnvironmentConfig {\n  // 1. Read project config from .semiont/config (skipped when no project root)\n  const projectConfigContent = projectRoot ? reader.readIfExists(`${projectRoot}/.semiont/config`) : null;\n  let projectName = 'semiont-project';\n  let projectVersion: string | undefined;\n  let projectSite: EnvironmentSection['site'] | undefined;\n  let projectEnvSection: EnvironmentSection = {};\n  if (projectConfigContent) {\n    const projectConfig = parseToml(projectConfigContent) as {\n      project?: { name?: string; version?: string };\n      site?: EnvironmentSection['site'];\n      environments?: Record<string, EnvironmentSection>;\n    };\n    projectName = projectConfig.project?.name ?? projectName;\n    projectVersion = projectConfig.project?.version;\n    projectSite = projectConfig.site;\n    projectEnvSection = projectConfig.environments?.[environment] ?? {};\n  }\n\n  // 2. Read global config (optional — missing config yields empty environments)\n  const globalContent = reader.readIfExists(globalConfigPath);\n  const raw = globalContent ? (parseToml(globalContent) as SemiontConfigFile) : ({} as SemiontConfigFile);\n\n  // 3. Deep-merge: project base + user overrides (user wins on conflicts)\n  const userEnvSection: EnvironmentSection = raw.environments?.[environment] ?? {};\n  const envSection: EnvironmentSection = deepMerge(\n    projectEnvSection as Record<string, unknown>,\n    userEnvSection as Record<string, unknown>\n  ) as EnvironmentSection;\n\n  // 4. Resolve ${VAR} references\n  const resolved = resolveEnvVars(envSection, env) as EnvironmentSection;\n\n  // 5. Build make-meaning actor/worker inference config with inheritance\n  // The flat [inference] section provides defaults (apiKey, maxTokens, endpoint/baseURL).\n  // Actor/worker sections only need to specify type and model; missing fields fall back\n  // to the flat inference section.\n  const flatInference = resolved.inference;\n  const makeMeaningSection = resolved['make-meaning'];\n  const workersSection = resolved.workers ?? {};\n  const actorsSection = resolved.actors ?? {};\n  const defaultWorkerInference = workersSection['default']?.inference;\n  const defaultMakeMeaningInference = makeMeaningSection?.default?.inference;\n\n  function mergeWithFlatInference(specific: InferenceConfig): InferenceConfig {\n    if (!flatInference) return specific;\n    // For keyed sub-sections, inherit credentials from the matching provider sub-section.\n    // For flat (legacy) format, flatInference.type is required to know which fields apply.\n    const providerDefaults: Partial<InferenceConfig> = {};\n    if (specific.type === 'anthropic') {\n      const a = flatInference.anthropic;\n      if (a) {\n        providerDefaults.apiKey = a.apiKey;\n        providerDefaults.endpoint = a.endpoint;\n      } else {\n        if (!flatInference.type) {\n          throw new Error(\n            `[environments.${environment}.inference] is missing 'type'. ` +\n            `Add type = \"anthropic\" or use [inference.anthropic] sub-section.`\n          );\n        }\n        providerDefaults.apiKey = flatInference.apiKey;\n        providerDefaults.endpoint = flatInference.endpoint;\n      }\n    } else if (specific.type === 'ollama') {\n      const o = flatInference.ollama;\n      if (o) {\n        providerDefaults.baseURL = o.baseURL;\n      } else {\n        if (!flatInference.type) {\n          throw new Error(\n            `[environments.${environment}.inference] is missing 'type'. ` +\n            `Add type = \"ollama\" or use [inference.ollama] sub-section.`\n          );\n        }\n        providerDefaults.baseURL = flatInference.baseURL;\n      }\n    }\n    return {\n      maxTokens: flatInference.maxTokens,\n      ...providerDefaults,\n      ...specific,\n    };\n  }\n\n  function resolveActorInference(fromMakeMeaning?: InferenceConfig, fromActors?: InferenceConfig): InferenceConfig | undefined {\n    const base = fromMakeMeaning ?? fromActors ?? defaultMakeMeaningInference;\n    if (!base) return undefined;\n    return mergeWithFlatInference(base);\n  }\n\n  const actors: ActorInferenceConfig = {};\n  const gathererInference = resolveActorInference(\n    makeMeaningSection?.actors?.gatherer?.inference,\n    actorsSection['gatherer']?.inference\n  );\n  if (gathererInference) actors.gatherer = gathererInference;\n\n  const matcherInference = resolveActorInference(\n    makeMeaningSection?.actors?.matcher?.inference,\n    actorsSection['matcher']?.inference\n  );\n  if (matcherInference) actors.matcher = matcherInference;\n\n  const workers: WorkerInferenceConfig = {};\n  const workerTypes = ['reference-annotation', 'highlight-annotation', 'assessment-annotation', 'comment-annotation', 'tag-annotation', 'generation'] as const;\n  if (defaultWorkerInference) {\n    workers.default = mergeWithFlatInference(defaultWorkerInference);\n  }\n  for (const wt of workerTypes) {\n    const specific = workersSection[wt]?.inference;\n    if (specific) {\n      (workers as Record<string, InferenceConfig>)[wt] = mergeWithFlatInference(specific);\n    }\n  }\n\n  // 6. Map to EnvironmentConfig\n  const backend = resolved.backend;\n  const site = resolved.site ?? projectSite;\n  const inferenceSection = resolved.inference;\n\n  // Build inference providers config.\n  // Supports two formats:\n  //   Flat:  [environments.local.inference] type = \"anthropic\"|\"ollama\"  (single provider)\n  //   Keyed: [environments.local.inference.anthropic] / [environments.local.inference.ollama] (multi-provider)\n  let inferenceProviders: EnvironmentConfig['inference'] | undefined;\n  if (inferenceSection) {\n    inferenceProviders = {};\n    // Keyed sub-sections take priority\n    if (inferenceSection.anthropic) {\n      const a = inferenceSection.anthropic;\n      inferenceProviders.anthropic = {\n        platform: requirePlatform(a.platform, 'inference.anthropic'),\n        endpoint: a.endpoint ?? 'https://api.anthropic.com',\n        apiKey: a.apiKey ?? '',\n      } as AnthropicProviderConfig;\n    } else if (inferenceSection.type === 'anthropic') {\n      inferenceProviders.anthropic = {\n        platform: requirePlatform(inferenceSection.platform, 'inference'),\n        endpoint: inferenceSection.endpoint ?? 'https://api.anthropic.com',\n        apiKey: inferenceSection.apiKey ?? '',\n      } as AnthropicProviderConfig;\n    }\n    if (inferenceSection.ollama) {\n      const o = inferenceSection.ollama;\n      inferenceProviders.ollama = {\n        platform: { type: requirePlatform(o.platform, 'inference.ollama') },\n        baseURL: o.baseURL,\n        port: o.baseURL ? undefined : (o.port ?? 11434),\n      } as OllamaProviderConfig;\n    } else if (inferenceSection.type === 'ollama') {\n      inferenceProviders.ollama = {\n        platform: { type: requirePlatform(inferenceSection.platform, 'inference') },\n        baseURL: inferenceSection.baseURL,\n        port: inferenceSection.baseURL ? undefined : 11434,\n      } as OllamaProviderConfig;\n    }\n  }\n\n  // Build top-level workers/actors maps for EnvironmentConfig\n  const topLevelWorkers: EnvironmentConfig['workers'] = {};\n  for (const [name, w] of Object.entries(workersSection)) {\n    if (w.inference) {\n      topLevelWorkers[name] = { inference: { type: w.inference.type, model: w.inference.model } };\n    }\n  }\n  const topLevelActors: EnvironmentConfig['actors'] = {};\n  for (const [name, a] of Object.entries(actorsSection)) {\n    if (a.inference) {\n      topLevelActors[name] = { inference: { type: a.inference.type, model: a.inference.model } };\n    }\n  }\n  // Also include make-meaning actors\n  if (makeMeaningSection?.actors?.gatherer?.inference) {\n    topLevelActors['gatherer'] = { inference: { type: makeMeaningSection.actors.gatherer.inference.type, model: makeMeaningSection.actors.gatherer.inference.model } };\n  }\n  if (makeMeaningSection?.actors?.matcher?.inference) {\n    topLevelActors['matcher'] = { inference: { type: makeMeaningSection.actors.matcher.inference.type, model: makeMeaningSection.actors.matcher.inference.model } };\n  }\n\n  const frontend = resolved.frontend;\n\n  const services: EnvironmentConfig['services'] = {};\n\n  if (backend) {\n    services.backend = {\n      platform: { type: requirePlatform(backend.platform, 'backend') },\n      port: backend.port ?? 4000,\n      publicURL: backend.publicURL ?? `http://localhost:${backend.port ?? 4000}`,\n      corsOrigin: backend.corsOrigin ?? backend.frontendURL ?? 'http://localhost:3000',\n    };\n  }\n\n  if (frontend) {\n    services.frontend = {\n      platform: { type: requirePlatform(frontend.platform, 'frontend') },\n      port: frontend.port ?? 3000,\n      siteName: site?.siteName ?? 'Semiont',\n      publicURL: frontend.publicURL,\n    };\n  }\n\n  if (resolved.graph) {\n    services.graph = {\n      ...resolved.graph,\n      platform: { type: requirePlatform(resolved.graph.platform as string | undefined, 'graph') },\n      type: (resolved.graph.type ?? 'neo4j') as import('./config.types').GraphDatabaseType,\n    } as EnvironmentConfig['services']['graph'];\n  } else if (makeMeaningSection?.graph) {\n    services.graph = makeMeaningSection.graph as EnvironmentConfig['services']['graph'];\n  }\n\n  if (resolved.database) {\n    services.database = {\n      platform: { type: requirePlatform(resolved.database.platform, 'database') },\n      type: 'postgres',\n      image: resolved.database.image,\n      host: resolved.database.host ?? 'localhost',\n      port: resolved.database.port ?? 5432,\n      name: resolved.database.name,\n      user: resolved.database.user,\n      password: resolved.database.password,\n    } as EnvironmentConfig['services']['database'];\n  }\n\n  if (resolved.vectors) {\n    services.vectors = {\n      platform: { type: 'external' as PlatformType },\n      type: (resolved.vectors.type ?? 'qdrant') as 'qdrant' | 'memory',\n      host: resolved.vectors.host,\n      port: resolved.vectors.port ?? 6333,\n    } as EnvironmentConfig['services']['vectors'];\n  }\n\n  // Embedding: top-level takes precedence, fall back to legacy vectors.embedding\n  const embeddingSource = resolved.embedding ?? resolved.vectors?.embedding;\n  if (embeddingSource) {\n    services.embedding = {\n      platform: { type: 'external' as PlatformType },\n      type: embeddingSource.type!,\n      model: embeddingSource.model!,\n      apiKey: embeddingSource.apiKey,\n      baseURL: embeddingSource.baseURL,\n      endpoint: embeddingSource.endpoint,\n      chunking: (resolved.embedding?.chunking ?? resolved.vectors?.chunking) ? {\n        chunkSize: (resolved.embedding?.chunking ?? resolved.vectors?.chunking)?.chunkSize ?? 512,\n        overlap: (resolved.embedding?.chunking ?? resolved.vectors?.chunking)?.overlap ?? 64,\n      } : undefined,\n    } as EnvironmentConfig['services']['embedding'];\n  }\n\n  const config: EnvironmentConfig = {\n    services,\n    ...(inferenceProviders ? { inference: inferenceProviders } : {}),\n    ...(Object.keys(topLevelWorkers).length > 0 ? { workers: topLevelWorkers } : {}),\n    ...(Object.keys(topLevelActors).length > 0 ? { actors: topLevelActors } : {}),\n    site: site ? {\n      domain: site.domain ?? 'localhost',\n      siteName: site.siteName,\n      adminEmail: site.adminEmail,\n      oauthAllowedDomains: site.oauthAllowedDomains as [string, ...string[]] | undefined,\n    } : undefined,\n    logLevel: resolved.logLevel,\n    _metadata: {\n      environment,\n      projectRoot,\n      projectName,\n      projectVersion,\n      ...(Object.keys(actors).length > 0 ? { actors } : {}),\n      ...(Object.keys(workers).length > 0 ? { workers } : {}),\n    },\n  };\n\n  return config;\n}\n\n/**\n * Create a TOML config loader backed by a file reader.\n * Drop-in replacement for createConfigLoader that reads TOML instead of JSON.\n * The caller must resolve globalConfigPath (e.g. expand '~' using process.env.HOME).\n */\nexport function createTomlConfigLoader(\n  reader: TomlFileReader,\n  globalConfigPath: string,\n  env: Record<string, string | undefined>\n) {\n  return (projectRoot: string | null, environment: string): EnvironmentConfig => {\n    return loadTomlConfig(projectRoot, environment, globalConfigPath, reader, env);\n  };\n}\n","import * as fs from 'fs';\nimport * as os from 'os';\nimport * as path from 'path';\nimport { execFileSync } from 'child_process';\n\n/**\n * Represents a Semiont project rooted at a given directory.\n *\n * Computes all paths — durable and ephemeral — once at construction time.\n * XDG environment variables are read here and nowhere else.\n *\n * Durable paths (inside the project root, committed or repo-local):\n *   eventsDir          — .semiont/events/      (system of record, committed)\n *   representationsDir — representations/      (content store, committed)\n *\n * Ephemeral paths (outside the project root, never committed):\n *   configDir      — $XDG_CONFIG_HOME/semiont/{name}/  (generated config for managed processes)\n *   dataHome       — $XDG_DATA_HOME/semiont/{name}/   (persistent user data, e.g. database files)\n *   stateDir        — $XDG_STATE_HOME/semiont/{name}/\n *   embeddingsDir   — stateDir/embeddings/\n *   projectionsDir  — stateDir/projections/\n *   jobsDir         — stateDir/jobs/\n *   backendLogsDir      — stateDir/backend/\n *   backendAppLogFile   — backendLogsDir/app.log\n *   backendErrorLogFile — backendLogsDir/error.log\n *   runtimeDir      — $XDG_RUNTIME_DIR/semiont/{name}/  (or $TMPDIR fallback)\n *   backendPidFile  — runtimeDir/backend.pid\n *\n * Note: frontend paths are NOT project-scoped. The frontend service is bundled\n * with the CLI and uses fixed XDG paths keyed by \"frontend\", not project name.\n * See apps/cli/src/platforms/posix/handlers/frontend-paths.ts.\n */\nexport class SemiontProject {\n  readonly root: string;\n  readonly name: string;\n\n  /** True if [git] sync = true in .semiont/config. When true, semiont stages\n   *  working-tree and event-log changes in the git index automatically. */\n  readonly gitSync: boolean;\n\n  // Durable\n  readonly eventsDir: string;\n  readonly representationsDir: string;\n\n  // Ephemeral — config (generated config files for managed processes)\n  readonly configDir: string;\n\n  // Ephemeral — data (persistent user data managed by semiont)\n  readonly dataHome: string;\n\n  // Ephemeral — state\n  readonly stateDir: string;\n  readonly embeddingsDir: string;\n  readonly projectionsDir: string;\n  readonly jobsDir: string;\n  readonly backendLogsDir: string;\n  readonly backendAppLogFile: string;\n  readonly backendErrorLogFile: string;\n\n  // Ephemeral — runtime\n  readonly runtimeDir: string;\n  readonly backendPidFile: string;\n\n  constructor(projectRoot: string, name?: string) {\n    this.root = projectRoot;\n    if (name !== undefined) {\n      const configPath = path.join(projectRoot, '.semiont', 'config');\n      if (!fs.existsSync(configPath)) {\n        fs.mkdirSync(path.join(projectRoot, '.semiont'), { recursive: true });\n        fs.writeFileSync(configPath, `[project]\\nname = \"${name}\"\\n`);\n      }\n    }\n    this.name = SemiontProject.readName(projectRoot);\n    this.gitSync = SemiontProject.readGitSync(projectRoot);\n\n    this.eventsDir = path.join(projectRoot, '.semiont', 'events');\n    this.representationsDir = path.join(projectRoot, 'representations');\n\n    const xdgConfig = process.env.XDG_CONFIG_HOME || path.join(os.homedir(), '.config');\n    this.configDir = path.join(xdgConfig, 'semiont', this.name);\n\n    const xdgData = process.env.XDG_DATA_HOME || path.join(os.homedir(), '.local', 'share');\n    this.dataHome = path.join(xdgData, 'semiont', this.name);\n\n    const xdgState = process.env.XDG_STATE_HOME || path.join(os.homedir(), '.local', 'state');\n    this.stateDir = path.join(xdgState, 'semiont', this.name);\n    this.embeddingsDir = path.join(this.stateDir, 'embeddings');\n    this.projectionsDir = path.join(this.stateDir, 'projections');\n    this.jobsDir = path.join(this.stateDir, 'jobs');\n    this.backendLogsDir = path.join(this.stateDir, 'backend');\n    this.backendAppLogFile = path.join(this.backendLogsDir, 'app.log');\n    this.backendErrorLogFile = path.join(this.backendLogsDir, 'error.log');\n\n    const xdgRuntime = process.env.XDG_RUNTIME_DIR;\n    const runtimeBase = xdgRuntime ?? process.env.TMPDIR ?? '/tmp';\n    this.runtimeDir = path.join(runtimeBase, 'semiont', this.name);\n    this.backendPidFile = path.join(this.runtimeDir, 'backend.pid');\n  }\n\n  /**\n   * Read the current git branch for the project root.\n   * Returns null if the project is not a git repo or git is not available.\n   */\n  gitBranch(): string | null {\n    try {\n      return execFileSync('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {\n        cwd: this.root,\n        encoding: 'utf-8',\n        stdio: ['ignore', 'pipe', 'ignore'],\n      }).trim() || null;\n    } catch {\n      return null;\n    }\n  }\n\n  /**\n   * Delete all ephemeral state for this project (stateDir + runtimeDir).\n   * Does not touch eventsDir or dataDir.\n   */\n  async destroy(): Promise<void> {\n    await Promise.all([\n      fs.promises.rm(this.configDir, { recursive: true, force: true }),\n      fs.promises.rm(this.stateDir, { recursive: true, force: true }),\n      fs.promises.rm(this.runtimeDir, { recursive: true, force: true }),\n    ]);\n  }\n\n  /**\n   * Read [git] sync from .semiont/config.\n   * Defaults to false if the section or key is absent.\n   */\n  private static readGitSync(projectRoot: string): boolean {\n    const configPath = path.join(projectRoot, '.semiont', 'config');\n    if (!fs.existsSync(configPath)) return false;\n    const content = fs.readFileSync(configPath, 'utf-8');\n    let inGitSection = false;\n    for (const line of content.split('\\n')) {\n      const trimmed = line.trim();\n      if (trimmed === '[git]') { inGitSection = true; continue; }\n      if (trimmed.startsWith('[')) { inGitSection = false; continue; }\n      if (inGitSection && trimmed.startsWith('sync') && trimmed.includes('=')) {\n        const value = trimmed.split('=')[1]?.trim();\n        return value === 'true';\n      }\n    }\n    return false;\n  }\n\n  /**\n   * Read the project name from .semiont/config [project] name = \"...\"\n   * Falls back to the directory basename if the config is absent or has no name.\n   */\n  private static readName(projectRoot: string): string {\n    const configPath = path.join(projectRoot, '.semiont', 'config');\n    if (fs.existsSync(configPath)) {\n      const content = fs.readFileSync(configPath, 'utf-8');\n      for (const line of content.split('\\n')) {\n        const trimmed = line.trim();\n        if (trimmed.startsWith('name') && trimmed.includes('=')) {\n          const [, ...rest] = trimmed.split('=');\n          return rest.join('=').trim().replace(/^\"(.*)\"$/, '$1');\n        }\n      }\n    }\n    return path.basename(projectRoot);\n  }\n}\n","import * as fs from 'fs';\nimport * as os from 'os';\nimport * as path from 'path';\nimport { createTomlConfigLoader } from './toml-loader.js';\nimport type { EnvironmentConfig } from './config.types.js';\n\nexport { SemiontProject } from '../project.js';\n\nconst nodeTomlFileReader = {\n  readIfExists: (filePath: string): string | null =>\n    fs.existsSync(filePath) ? fs.readFileSync(filePath, 'utf-8') : null,\n};\n\n/**\n * Load semiont environment config for a Node.js process.\n *\n * Reads ~/.semiontconfig (global) merged with .semiont/config (project-local),\n * then selects the given environment overlay.\n *\n * This is the canonical config loader for any Node.js process. SEMIONT_ENV\n * should be read once at the process entry point and passed as `environment`.\n */\nexport function loadEnvironmentConfig(\n  projectRoot: string,\n  environment: string\n): EnvironmentConfig {\n  const globalConfigPath = path.join(os.homedir(), '.semiontconfig');\n  return createTomlConfigLoader(\n    nodeTomlFileReader,\n    globalConfigPath,\n    process.env\n  )(projectRoot, environment);\n}\n"]}

package/dist/index.d.ts

@@ -3411,16 +3411,12 @@ interface components {
             percentage?: number;
             message?: string;
         };
-        /** @description Metadata added at persistence time. Part of every StoredEvent. */
+        /** @description Metadata added at persistence time. Part of every StoredEvent. Integrity is provided by git at the commit level (when gitSync is enabled), not by in-event metadata fields. */
         EventMetadata: {
             /** @description Monotonic position in the event log (ordering authority) */
             sequenceNumber: number;
             /** @description Byte offset in the JSONL file */
             streamPosition: number;
-            /** @description SHA-256 of the previous event (hash chain) */
-            prevEventHash?: string;
-            /** @description SHA-256 of this event (integrity verification) */
-            checksum?: string;
             /** @description Optional correlation id propagated from a command. Lets clients match command-result events back to the POST that initiated them. Set by EventStore.appendEvent's options when a route handler passes one through. */
             correlationId?: string;
         };
@@ -3607,19 +3603,6 @@ interface components {
             error: string;
             details?: string;
         };
-        /** @description Payload for embedding:computed domain event */
-        EmbeddingComputedPayload: {
-            annotationId?: string;
-            chunkIndex: number;
-            chunkText: string;
-            embedding: number[];
-            model: string;
-            dimensions: number;
-        };
-        /** @description Payload for embedding:deleted domain event */
-        EmbeddingDeletedPayload: {
-            annotationId?: string;
-        };
         AnnotateHighlightsStreamRequest: {
             /** @description Optional instructions to guide AI highlight annotation */
             instructions?: string;
@@ -4312,21 +4295,6 @@ interface components {
             path: string;
             reason?: string;
         };
-        /** @description Command to store a computed embedding for a resource chunk */
-        EmbeddingComputeCommand: {
-            resourceId: string;
-            annotationId?: string;
-            chunkIndex: number;
-            chunkText: string;
-            embedding: number[];
-            model: string;
-            dimensions: number;
-        };
-        /** @description Command to delete embeddings for a resource or annotation */
-        EmbeddingDeleteCommand: {
-            resourceId: string;
-            annotationId?: string;
-        };
         /** @description W3C Web Annotation FragmentSelector for media fragment identifiers (RFC 3778 for PDFs) */
         FragmentSelector: {
             /** @enum {string} */
@@ -4963,7 +4931,7 @@ interface EntityTypeStats {
 /**
  * Persisted Events
  *
- * The 20 event types that get appended to the JSONL event log.
+ * The 18 event types that get appended to the JSONL event log.
  * Each maps a type string to its OpenAPI payload schema.
  * The PersistedEvent union derives from this catalog.
  */
@@ -4991,8 +4959,6 @@ type PersistedEventCatalog = {
     'job:progress': components['schemas']['JobProgressPayload'];
     'job:completed': components['schemas']['JobCompletedPayload'];
     'job:failed': components['schemas']['JobFailedPayload'];
-    'embedding:computed': components['schemas']['EmbeddingComputedPayload'];
-    'embedding:deleted': components['schemas']['EmbeddingDeletedPayload'];
 };
 /** System event types — persisted events that have no resourceId. */
 type SystemEventType = 'mark:entity-type-added';
@@ -5020,7 +4986,7 @@ type PersistedEventType = PersistedEvent['type'];
  * also adding it here: forgetting fails to typecheck rather than silently
  * dropping the event from the events-stream.
  */
-declare const PERSISTED_EVENT_TYPES: readonly ["yield:created", "yield:cloned", "yield:updated", "yield:moved", "yield:representation-added", "yield:representation-removed", "mark:added", "mark:removed", "mark:body-updated", "mark:archived", "mark:unarchived", "mark:entity-tag-added", "mark:entity-tag-removed", "mark:entity-type-added", "job:started", "job:progress", "job:completed", "job:failed", "embedding:computed", "embedding:deleted"];
+declare const PERSISTED_EVENT_TYPES: readonly ["yield:created", "yield:cloned", "yield:updated", "yield:moved", "yield:representation-added", "yield:representation-removed", "mark:added", "mark:removed", "mark:body-updated", "mark:archived", "mark:unarchived", "mark:entity-tag-added", "mark:entity-tag-removed", "mark:entity-type-added", "job:started", "job:progress", "job:completed", "job:failed"];
 /** Input type for appendEvent — PersistedEvent without id/timestamp (assigned at persistence time). */
 type EventInput = Omit<PersistedEvent, 'id' | 'timestamp'>;
 
@@ -5306,8 +5272,6 @@ type EventMap = {
     'job:status-failed': {
         correlationId: string;
     } & components['schemas']['CommandError'];
-    'embedding:compute': components['schemas']['EmbeddingComputeCommand'];
-    'embedding:delete': components['schemas']['EmbeddingDeleteCommand'];
     'settings:theme-changed': components['schemas']['SettingsThemeChangedEvent'];
     'settings:line-numbers-toggled': void;
     'settings:locale-changed': components['schemas']['SettingsLocaleChangedEvent'];
@@ -5363,8 +5327,6 @@ interface StoredEventLike {
     payload?: unknown;
     metadata: {
         sequenceNumber: number;
-        prevEventHash?: string;
-        checksum?: string;
     };
 }
 /**
@@ -5583,6 +5545,57 @@ interface BurstBufferOptions {
  */
 declare function burstBuffer<T>(options: BurstBufferOptions): OperatorFunction<T, T | T[]>;
 
+/**
+ * serializePerKey — run async work serialized per key, parallel across keys.
+ *
+ * Invariant: two calls with the same `key` run strictly in sequence (the
+ * second `work` does not start until the first has settled). Calls with
+ * different keys overlap freely.
+ *
+ * Error isolation: a rejected work function does not poison subsequent
+ * tasks for the same key. The next task starts fresh from whatever state
+ * the failed task left behind. The rejection still propagates to *this*
+ * caller.
+ *
+ * Registry cleanup: the entry for a key is removed as soon as its chain
+ * empties, so the Map stays bounded by the number of keys with work
+ * currently in flight, not by the total number of keys ever seen.
+ *
+ * ## Usage
+ *
+ * ```ts
+ * const chains = new Map<string, Promise<void>>();
+ *
+ * async function write(resourceId: string, event: Event) {
+ *   return serializePerKey(resourceId, chains, async () => {
+ *     // Read-modify-write on a view file. Any two concurrent calls with
+ *     // the same resourceId will be serialized; different resourceIds
+ *     // will proceed in parallel.
+ *     const view = await viewStorage.get(resourceId);
+ *     applyEvent(view, event);
+ *     await viewStorage.save(resourceId, view);
+ *   });
+ * }
+ * ```
+ *
+ * ## When to use this vs RxJS `groupBy + concatMap`
+ *
+ * Use `serializePerKey` when the work arrives as **direct method calls**
+ * that need to block the caller until completion. This is the RPC shape
+ * — think `EventStore.appendEvent` calling `await views.materializeResource(...)`
+ * and needing the view written before any subscriber sees the published
+ * event.
+ *
+ * Use RxJS `groupBy(keyFn) + concatMap(...)` when the work arrives as an
+ * **event stream** that a component subscribes to once at startup. This
+ * is how `Smelter`, `GraphDBConsumer`, and `Gatherer` serialize their own
+ * per-resource work — see their implementations in `packages/make-meaning`.
+ *
+ * Both patterns solve the same logical problem ("serialize work per key").
+ * The choice is dictated by whether the caller is awaiting the result.
+ */
+declare function serializePerKey<K, T>(key: K, chains: Map<K, Promise<void>>, work: () => Promise<T>): Promise<T>;
+
 /**
  * Logger interface for observability
  *
@@ -5608,17 +5621,78 @@ interface Logger {
     error(message: string, meta?: any): void;
     child(meta: Record<string, any>): Logger;
 }
+/**
+ * Serialize an error value into a form that JSON.stringify can handle
+ * meaningfully.
+ *
+ * Winston's default JSON formatter serializes `Error` instances as `{}`
+ * because `message`, `stack`, and `name` are non-enumerable properties on
+ * the Error prototype. That means `logger.error('x', { error })` with a
+ * raw Error argument produces useless log lines like
+ * `{"error":{},"message":"x",...}`, throwing away the information you
+ * actually need to diagnose the failure.
+ *
+ * This helper extracts the parts you want to see in a log — name,
+ * message, stack, and cause — and leaves non-Error values alone (so
+ * strings, numbers, and plain objects pass through unchanged).
+ *
+ * ## Usage
+ *
+ * ```ts
+ * try {
+ *   await doSomething();
+ * } catch (error) {
+ *   logger.error('Something failed', { error: errField(error) });
+ * }
+ * ```
+ *
+ * Use this at every `logger.error` call site that includes an `error`
+ * field derived from a catch block. Raw `{ error }` without this helper
+ * is almost always a bug.
+ */
+declare function errField(error: unknown): unknown;
 
 /**
- * Backend-specific annotation utility functions
+ * Annotation body utilities
+ *
+ * These are the matcher primitives used by the `mark:body-updated` event
+ * replay path (ViewMaterializer and GraphDBConsumer) to apply add/remove/
+ * replace operations against an annotation body.
  */
 
 type Annotation$2 = components['schemas']['Annotation'];
+type BodyPurpose = components['schemas']['BodyPurpose'];
 /**
- * Find a body item in an array
- * Returns the index of the first matching item, or -1 if not found
+ * Identity of a body item for matching purposes.
+ *
+ * Identity is `type + source` for SpecificResource and `type + value` for
+ * TextualBody. `purpose` is OPTIONAL: if the caller provides it, it's
+ * included in the match (used to disambiguate same-source bodies under
+ * different purposes, per the W3C Web Annotation model). If the caller
+ * omits it, the matcher ignores purpose and matches on identity alone.
+ *
+ * Callers SHOULD provide `purpose` when they know it (e.g., the bind flow
+ * always unlinks a `purpose: 'linking'` body) so that future multi-purpose
+ * annotations continue to disambiguate correctly. Leaving `purpose`
+ * unspecified matches whichever purpose comes first in the body — which is
+ * fine today because Semiont annotations currently have at most one body
+ * item per (type, source/value) pair.
+ */
+type BodyItemIdentity = {
+    type: 'SpecificResource';
+    source: string;
+    purpose?: BodyPurpose;
+} | {
+    type: 'TextualBody';
+    value: string;
+    purpose?: BodyPurpose;
+};
+/**
+ * Find a body item by identity. Returns the index of the first match, or -1.
+ *
+ * See `BodyItemIdentity` for matching semantics.
  */
-declare function findBodyItem(body: Annotation$2['body'], targetItem: BodyItem): number;
+declare function findBodyItem(body: Annotation$2['body'], identity: BodyItemIdentity): number;
 
 /**
  * Annotation Assembly
@@ -5997,4 +6071,4 @@ declare function getAllPlatformTypes(): PlatformType[];
 declare const CORE_TYPES_VERSION = "0.1.0";
 declare const SDK_VERSION = "0.1.0";
 
-export { APIError, type AccessToken, type AnnotationCategory, type AnnotationId, type AnnotationUri, type AssembledAnnotation, type AuthCode, type BaseUrl, type BodyItem, type BodyOperation, type Brand, type BurstBufferOptions, CORE_TYPES_VERSION, CREATION_METHODS, type CloneToken, ConfigurationError, ConflictError, type ContentFormat, type CreateAnnotationInternal, type CreationMethod, type Email, type EntityType, type EntityTypeStats, type Environment, EnvironmentConfig, type EventBase, EventBus, type EventInput, type EventMap, type EventMetadata, type EventName, type EventOfType, type EventQuery, type EventSignature, type GatheredContext, type GoogleAuthRequest, type GoogleCredential, type GraphConnection, type GraphPath, type JobId, type Logger, type MCPToken, type MarkProgress, type Motivation, NotFoundError, PERSISTED_EVENT_TYPES, type PersistedEvent, type PersistedEventType, type PlatformType, type RefreshToken, type ResourceAnnotationUri, type ResourceAnnotations, type ResourceFilter, type ResourceId, type ResourceUri, SDK_VERSION, STREAM_COMMAND_RESULT_TYPES, ScopedEventBus, ScriptError, type SearchQuery, type SelectionData, type Selector, SemiontError, type StoredEvent, type StoredEventLike, type ActorInferenceConfig as TomlActorInferenceConfig, type TomlFileReader, type InferenceConfig as TomlInferenceConfig, type WorkerInferenceConfig as TomlWorkerInferenceConfig, UnauthorizedError, type UpdateResourceInput, type UserDID, type UserId, ValidationError, type YieldProgress, accessToken, annotationId, annotationUri, applyBodyOperations, assembleAnnotation, authCode, baseUrl, burstBuffer, cloneToken, type components, createTomlConfigLoader, didToAgent, email, entityType, findBodyItem, generateUuid, getAllPlatformTypes, getAnnotationUriFromEvent, getFragmentSelector, getSvgSelector, getTextPositionSelector, googleCredential, isAnnotationId, isArray, isBoolean, isDefined, isEventRelatedToAnnotation, isFunction, isNull, isNullish, isNumber, isObject, isResourceId, isStoredEvent, isString, isUndefined, isValidPlatformType, jobId, loadTomlConfig, mcpToken, type operations, parseEnvironment, type paths, refreshToken, resourceAnnotationUri, resourceId, resourceUri, searchQuery, userDID, userId, userToAgent, userToDid, validateEnvironment, validateSvgMarkup };
+export { APIError, type AccessToken, type AnnotationCategory, type AnnotationId, type AnnotationUri, type AssembledAnnotation, type AuthCode, type BaseUrl, type BodyItem, type BodyItemIdentity, type BodyOperation, type Brand, type BurstBufferOptions, CORE_TYPES_VERSION, CREATION_METHODS, type CloneToken, ConfigurationError, ConflictError, type ContentFormat, type CreateAnnotationInternal, type CreationMethod, type Email, type EntityType, type EntityTypeStats, type Environment, EnvironmentConfig, type EventBase, EventBus, type EventInput, type EventMap, type EventMetadata, type EventName, type EventOfType, type EventQuery, type EventSignature, type GatheredContext, type GoogleAuthRequest, type GoogleCredential, type GraphConnection, type GraphPath, type JobId, type Logger, type MCPToken, type MarkProgress, type Motivation, NotFoundError, PERSISTED_EVENT_TYPES, type PersistedEvent, type PersistedEventType, type PlatformType, type RefreshToken, type ResourceAnnotationUri, type ResourceAnnotations, type ResourceFilter, type ResourceId, type ResourceUri, SDK_VERSION, STREAM_COMMAND_RESULT_TYPES, ScopedEventBus, ScriptError, type SearchQuery, type SelectionData, type Selector, SemiontError, type StoredEvent, type StoredEventLike, type ActorInferenceConfig as TomlActorInferenceConfig, type TomlFileReader, type InferenceConfig as TomlInferenceConfig, type WorkerInferenceConfig as TomlWorkerInferenceConfig, UnauthorizedError, type UpdateResourceInput, type UserDID, type UserId, ValidationError, type YieldProgress, accessToken, annotationId, annotationUri, applyBodyOperations, assembleAnnotation, authCode, baseUrl, burstBuffer, cloneToken, type components, createTomlConfigLoader, didToAgent, email, entityType, errField, findBodyItem, generateUuid, getAllPlatformTypes, getAnnotationUriFromEvent, getFragmentSelector, getSvgSelector, getTextPositionSelector, googleCredential, isAnnotationId, isArray, isBoolean, isDefined, isEventRelatedToAnnotation, isFunction, isNull, isNullish, isNumber, isObject, isResourceId, isStoredEvent, isString, isUndefined, isValidPlatformType, jobId, loadTomlConfig, mcpToken, type operations, parseEnvironment, type paths, refreshToken, resourceAnnotationUri, resourceId, resourceUri, searchQuery, serializePerKey, userDID, userId, userToAgent, userToDid, validateEnvironment, validateSvgMarkup };