@semiont/cli 0.1.0

package/dist/mcp-server/handlers.js

@@ -0,0 +1,253 @@
+/**
+ * Tool execution handlers using @semiont/api-client
+ */
+import { getExactText, getBodySource, resourceUri, annotationUri } from '@semiont/api-client';
+export async function handleCreateResource(client, args) {
+    // Create File from content string for multipart/form-data upload
+    const format = args?.contentType || 'text/plain';
+    const content = args?.content || '';
+    const blob = new Blob([content], { type: format });
+    const file = new File([blob], args?.name + '.txt', { type: format });
+    const data = await client.createResource({
+        name: args?.name,
+        file: file,
+        format: format,
+        entityTypes: args?.entityTypes || [],
+    });
+    return {
+        content: [{
+                type: 'text',
+                text: `Resource created successfully:\nID: ${data.resource.id}\nName: ${data.resource.name}\nEntity Types: ${data.resource.entityTypes?.join(', ') || 'None'}`,
+            }],
+    };
+}
+export async function handleGetResource(client, id) {
+    const data = await client.getResource(resourceUri(id));
+    return {
+        content: [{
+                type: 'text',
+                text: JSON.stringify(data, null, 2),
+            }],
+    };
+}
+export async function handleListResources(client, args) {
+    const data = await client.listResources(args?.limit, args?.archived ?? false);
+    return {
+        content: [{
+                type: 'text',
+                text: `Found ${data.total} resources:\n${data.resources.map((d) => `- ${d.name} (${d.id}) - ${d.entityTypes?.join(', ') || 'No types'}`).join('\n')}`,
+            }],
+    };
+}
+export async function handleDetectAnnotations(client, args) {
+    const rUri = resourceUri(args?.resourceId);
+    const entityTypes = args?.entityTypes || [];
+    return new Promise((resolve) => {
+        const stream = client.sse.detectAnnotations(rUri, { entityTypes });
+        const progressMessages = [];
+        stream.onProgress((progress) => {
+            const msg = progress.status === 'scanning'
+                ? `Scanning for ${progress.currentEntityType}... (${progress.processedEntityTypes}/${progress.totalEntityTypes})`
+                : `Status: ${progress.status}`;
+            progressMessages.push(msg);
+            console.error(msg); // Send to stderr for MCP progress
+        });
+        stream.onComplete((result) => {
+            resolve({
+                content: [{
+                        type: 'text',
+                        text: `Entity detection complete!\nFound ${result.foundCount || 0} entities\n\nProgress:\n${progressMessages.join('\n')}`,
+                    }],
+            });
+        });
+        stream.onError((error) => {
+            resolve({
+                content: [{
+                        type: 'text',
+                        text: `Entity detection failed: ${error.message}`,
+                    }],
+                isError: true,
+            });
+        });
+    });
+}
+export async function handleCreateAnnotation(client, args) {
+    const selectionData = args?.selectionData || {};
+    const entityTypes = args?.entityTypes || [];
+    // Convert entityTypes to W3C TextualBody items
+    const body = entityTypes.map((value) => ({
+        type: 'TextualBody',
+        value,
+        purpose: 'tagging',
+    }));
+    const rUri = resourceUri(args?.resourceId);
+    const data = await client.createAnnotation(rUri, {
+        motivation: 'highlighting',
+        target: {
+            source: args?.resourceId,
+            selector: [
+                {
+                    type: 'TextPositionSelector',
+                    start: selectionData.offset || 0,
+                    end: (selectionData.offset || 0) + (selectionData.length || 0),
+                },
+                {
+                    type: 'TextQuoteSelector',
+                    exact: selectionData.text || '',
+                },
+            ],
+        },
+        body,
+    });
+    // Extract text using SDK utility
+    const targetSelector = typeof data.annotation.target === 'string'
+        ? undefined
+        : data.annotation.target.selector;
+    const exactText = getExactText(targetSelector);
+    return {
+        content: [{
+                type: 'text',
+                text: `Annotation created:\nID: ${data.annotation.id}\nMotivation: ${data.annotation.motivation}\nText: ${exactText}`,
+            }],
+    };
+}
+export async function handleSaveAnnotation(_client, _args) {
+    // NOTE: The /save endpoint was removed from the API
+    // This functionality may have been merged into the main annotation creation
+    return {
+        content: [{
+                type: 'text',
+                text: `Error: The save annotation endpoint is no longer available. Annotations are automatically persisted when created.`,
+            }],
+        isError: true,
+    };
+}
+export async function handleResolveAnnotation(client, args) {
+    const data = await client.updateAnnotationBody(args?.selectionId, {
+        resourceId: args?.sourceResourceId,
+        operations: [{
+                op: 'add',
+                item: {
+                    type: 'SpecificResource',
+                    source: args?.resourceId,
+                    purpose: 'linking',
+                },
+            }],
+    });
+    return {
+        content: [{
+                type: 'text',
+                text: `Annotation linked to resource:\nAnnotation ID: ${data.annotation.id}\nLinked to: ${args?.resourceId || 'null'}`,
+            }],
+    };
+}
+export async function handleGenerateResourceFromAnnotation(client, args) {
+    const rUri = resourceUri(args?.resourceId);
+    const aUri = annotationUri(args?.annotationId);
+    const request = {
+        title: args?.title,
+        prompt: args?.prompt,
+        language: args?.language,
+    };
+    return new Promise((resolve) => {
+        const stream = client.sse.generateResourceFromAnnotation(rUri, aUri, request);
+        const progressMessages = [];
+        stream.onProgress((progress) => {
+            const msg = `${progress.status}: ${progress.percentage}% - ${progress.message || ''}`;
+            progressMessages.push(msg);
+            console.error(msg); // Send to stderr for MCP progress
+        });
+        stream.onComplete((result) => {
+            resolve({
+                content: [{
+                        type: 'text',
+                        text: `Resource generation complete!\nResource ID: ${result.resourceId || 'unknown'}\nResource Name: ${result.resourceName || 'unknown'}\n\nProgress:\n${progressMessages.join('\n')}`,
+                    }],
+            });
+        });
+        stream.onError((error) => {
+            resolve({
+                content: [{
+                        type: 'text',
+                        text: `Resource generation failed: ${error.message}`,
+                    }],
+                isError: true,
+            });
+        });
+    });
+}
+export async function handleGetContextualSummary(_client, _args) {
+    // NOTE: /contextual-summary endpoint was removed or renamed
+    // Use /api/annotations/{id}/summary or /api/annotations/{id}/context instead
+    return {
+        content: [{
+                type: 'text',
+                text: `Error: The contextual-summary endpoint is no longer available. Use /summary or /context endpoints instead.`,
+            }],
+        isError: true,
+    };
+}
+export async function handleGetSchemaDescription(_client) {
+    // NOTE: /schema-description endpoint was removed
+    return {
+        content: [{
+                type: 'text',
+                text: `Error: The schema-description endpoint is no longer available.`,
+            }],
+        isError: true,
+    };
+}
+export async function handleGetLLMContext(_client, _args) {
+    // NOTE: Endpoint path may have changed - need to verify correct path
+    return {
+        content: [{
+                type: 'text',
+                text: `Error: The llm-context endpoint path needs to be updated.`,
+            }],
+        isError: true,
+    };
+}
+export async function handleGetResourceAnnotations(_client, _args) {
+    // NOTE: Use /api/resources/{id}/annotations instead
+    return {
+        content: [{
+                type: 'text',
+                text: `Error: This endpoint needs to be updated to use /api/resources/{id}/annotations.`,
+            }],
+        isError: true,
+    };
+}
+export async function handleGetResourceHighlights(client, args) {
+    const data = await client.getResourceAnnotations(resourceUri(args?.resourceId));
+    const highlights = data.annotations.filter(a => a.motivation === 'highlighting');
+    return {
+        content: [{
+                type: 'text',
+                text: `Found ${highlights.length} highlights in resource:\n${highlights.map(h => {
+                    // Safely get exact text from TextQuoteSelector
+                    const targetSelector = typeof h.target === 'string' ? undefined : h.target.selector;
+                    const selectors = Array.isArray(targetSelector) ? targetSelector : [targetSelector];
+                    const textQuoteSelector = selectors.find(s => s?.type === 'TextQuoteSelector');
+                    const text = textQuoteSelector && 'exact' in textQuoteSelector ? textQuoteSelector.exact : h.id;
+                    return `- ${text}${h.creator ? ` (creator: ${h.creator.name})` : ''}`;
+                }).join('\n')}`,
+            }],
+    };
+}
+export async function handleGetResourceReferences(client, args) {
+    const data = await client.getResourceAnnotations(resourceUri(args?.resourceId));
+    const references = data.annotations.filter(a => a.motivation === 'linking');
+    return {
+        content: [{
+                type: 'text',
+                text: `Found ${references.length} references in resource:\n${references.map(r => {
+                    // Use SDK utilities to extract text and source
+                    const targetSelector = typeof r.target === 'string' ? undefined : r.target.selector;
+                    const text = getExactText(targetSelector) || r.id;
+                    const source = getBodySource(r.body);
+                    return `- ${text} → ${source || 'stub (no link)'}`;
+                }).join('\n')}`,
+            }],
+    };
+}
+//# sourceMappingURL=handlers.js.map

package/dist/mcp-server/handlers.js.map

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package/dist/mcp-server/index.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=index.d.ts.map

package/dist/mcp-server/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":""}

package/dist/mcp-server/index.js

@@ -0,0 +1,365 @@
+#!/usr/bin/env node
+import { Server } from '@modelcontextprotocol/sdk/server/index.js';
+import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import { CallToolRequestSchema, ListToolsRequestSchema, ListResourcesRequestSchema, ListPromptsRequestSchema, } from '@modelcontextprotocol/sdk/types.js';
+import { SemiontApiClient, baseUrl, accessToken } from '@semiont/api-client';
+/**
+ * Semiont MCP Server
+ *
+ * This MCP server provides access to the Semiont API.
+ * It handles authentication and makes the API available to AI applications.
+ */
+import * as handlers from './handlers.js';
+// Configuration from environment variables
+if (!process.env.SEMIONT_ENV) {
+    throw new Error('SEMIONT_ENV environment variable is required');
+}
+if (!process.env.SEMIONT_API_URL) {
+    throw new Error('SEMIONT_API_URL environment variable is required');
+}
+if (!process.env.SEMIONT_ACCESS_TOKEN) {
+    throw new Error('SEMIONT_ACCESS_TOKEN environment variable is required');
+}
+const SEMIONT_ENV = process.env.SEMIONT_ENV;
+const SEMIONT_API_URL = process.env.SEMIONT_API_URL;
+const SEMIONT_ACCESS_TOKEN = process.env.SEMIONT_ACCESS_TOKEN;
+// Create the Semiont API client
+const apiClient = new SemiontApiClient({
+    baseUrl: baseUrl(SEMIONT_API_URL),
+    accessToken: accessToken(SEMIONT_ACCESS_TOKEN),
+});
+// Create the MCP server
+const server = new Server({
+    name: 'semiont-mcp',
+    version: '0.1.0',
+}, {
+    capabilities: {
+        tools: {},
+        resources: {},
+        prompts: {},
+    },
+});
+// Define all available tools
+server.setRequestHandler(ListToolsRequestSchema, async () => {
+    return {
+        tools: [
+            // Resource Management
+            {
+                name: 'semiont_create_resource',
+                description: 'Create a new resource in the knowledge graph',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        name: { type: 'string', description: 'Resource name' },
+                        content: { type: 'string', description: 'Resource content' },
+                        entityTypes: {
+                            type: 'array',
+                            items: { type: 'string' },
+                            description: 'Entity types (e.g., Person, Topic, Concept)'
+                        },
+                        contentType: { type: 'string', description: 'Content MIME type (default: text/plain)' },
+                        metadata: { type: 'object', description: 'Additional metadata' },
+                    },
+                    required: ['name', 'content'],
+                },
+            },
+            {
+                name: 'semiont_get_resource',
+                description: 'Get a resource by ID with its selections',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        id: { type: 'string', description: 'Resource ID' },
+                    },
+                    required: ['id'],
+                },
+            },
+            {
+                name: 'semiont_list_resources',
+                description: 'List and search resources',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        entityTypes: { type: 'string', description: 'Comma-separated entity types to filter' },
+                        search: { type: 'string', description: 'Search query' },
+                        archived: { type: 'boolean', description: 'Filter by archived status (default: false - shows only non-archived resources)' },
+                        limit: { type: 'number', description: 'Maximum results (default: 20)' },
+                        offset: { type: 'number', description: 'Offset for pagination (default: 0)' },
+                    },
+                },
+            },
+            {
+                name: 'semiont_detect_selections',
+                description: 'Detect selections (entities, references) in a resource',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        resourceId: { type: 'string', description: 'Resource ID' },
+                        types: {
+                            type: 'array',
+                            items: { type: 'string' },
+                            description: 'Types to detect (default: entities, concepts)'
+                        },
+                        confidence: { type: 'number', description: 'Minimum confidence (0-1, default: 0.7)' },
+                    },
+                    required: ['resourceId'],
+                },
+            },
+            // Selection Management
+            {
+                name: 'semiont_create_selection',
+                description: 'Create a new selection in a resource',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        resourceId: { type: 'string', description: 'Resource ID' },
+                        selectionType: { type: 'string', description: 'Selection type (e.g., text_span)' },
+                        selectionData: {
+                            type: 'object',
+                            description: 'Selection data (offset, length, text, etc.)',
+                            properties: {
+                                type: { type: 'string' },
+                                offset: { type: 'number' },
+                                length: { type: 'number' },
+                                text: { type: 'string' },
+                            },
+                        },
+                        entityTypes: {
+                            type: 'array',
+                            items: { type: 'string' },
+                            description: 'Entity types for this selection'
+                        },
+                        provisional: { type: 'boolean', description: 'Is this provisional?' },
+                    },
+                    required: ['resourceId', 'selectionType', 'selectionData'],
+                },
+            },
+            {
+                name: 'semiont_save_selection',
+                description: 'Save a selection as a highlight',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        selectionId: { type: 'string', description: 'Selection ID' },
+                        metadata: { type: 'object', description: 'Additional metadata' },
+                    },
+                    required: ['selectionId'],
+                },
+            },
+            {
+                name: 'semiont_resolve_selection',
+                description: 'Link a selection to a resource (adds SpecificResource to annotation body)',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        selectionId: { type: 'string', description: 'Selection ID' },
+                        resourceId: { type: 'string', description: 'Target resource ID to link to' },
+                    },
+                    required: ['selectionId', 'resourceId'],
+                },
+            },
+            // Resource Generation from Selections
+            {
+                name: 'semiont_generate_resource_from_selection',
+                description: 'Generate a resource with AI-generated content from a selection',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        selectionId: { type: 'string', description: 'Selection ID' },
+                        name: { type: 'string', description: 'Resource name (optional)' },
+                        entityTypes: {
+                            type: 'array',
+                            items: { type: 'string' },
+                            description: 'Entity types for the new resource'
+                        },
+                        prompt: { type: 'string', description: 'AI generation prompt' },
+                    },
+                    required: ['selectionId'],
+                },
+            },
+            // Context and Analysis
+            {
+                name: 'semiont_get_contextual_summary',
+                description: 'Get a contextual summary for a selection',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        selectionId: { type: 'string', description: 'Selection ID' },
+                        includeRelated: { type: 'boolean', description: 'Include related resources' },
+                        maxRelated: { type: 'number', description: 'Max related resources' },
+                    },
+                    required: ['selectionId'],
+                },
+            },
+            {
+                name: 'semiont_get_schema_description',
+                description: 'Get a natural language description of the graph schema',
+                inputSchema: {
+                    type: 'object',
+                    properties: {},
+                },
+            },
+            {
+                name: 'semiont_get_llm_context',
+                description: 'Get LLM-suitable context for a resource and optional selection',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        resourceId: { type: 'string', description: 'Resource ID' },
+                        selectionId: { type: 'string', description: 'Optional selection ID' },
+                        includeReferences: { type: 'boolean', description: 'Include references (default: true)' },
+                        includeSelections: { type: 'boolean', description: 'Include selections (default: true)' },
+                        maxReferencedResources: { type: 'number', description: 'Max referenced docs (default: 5)' },
+                        contextWindow: { type: 'number', description: 'Context window size (default: 1000)' },
+                    },
+                    required: ['resourceId'],
+                },
+            },
+            // Relationship Queries
+            {
+                name: 'semiont_get_resource_selections',
+                description: 'Get all selections in a resource',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        resourceId: { type: 'string', description: 'Resource ID' },
+                    },
+                    required: ['resourceId'],
+                },
+            },
+            {
+                name: 'semiont_get_resource_highlights',
+                description: 'Get saved highlights in a resource',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        resourceId: { type: 'string', description: 'Resource ID' },
+                    },
+                    required: ['resourceId'],
+                },
+            },
+            {
+                name: 'semiont_get_resource_references',
+                description: 'Get linked references in a resource',
+                inputSchema: {
+                    type: 'object',
+                    properties: {
+                        resourceId: { type: 'string', description: 'Resource ID' },
+                    },
+                    required: ['resourceId'],
+                },
+            },
+        ],
+    };
+});
+// Handle resources list (empty - we don't provide resources)
+server.setRequestHandler(ListResourcesRequestSchema, async () => {
+    return {
+        resources: [],
+    };
+});
+// Handle prompts list (empty - we don't provide prompts)
+server.setRequestHandler(ListPromptsRequestSchema, async () => {
+    return {
+        prompts: [],
+    };
+});
+// Handle tool execution
+server.setRequestHandler(CallToolRequestSchema, async (request) => {
+    const { name, arguments: args } = request.params;
+    try {
+        switch (name) {
+            case 'semiont_create_resource':
+                return await handlers.handleCreateResource(apiClient, args);
+            case 'semiont_get_resource':
+                return await handlers.handleGetResource(apiClient, args?.id);
+            case 'semiont_list_resources':
+                return await handlers.handleListResources(apiClient, args);
+            case 'semiont_detect_selections':
+                return await handlers.handleDetectAnnotations(apiClient, args);
+            case 'semiont_create_selection':
+                return await handlers.handleCreateAnnotation(apiClient, args);
+            case 'semiont_save_selection':
+                return await handlers.handleSaveAnnotation(apiClient, args);
+            case 'semiont_resolve_selection':
+                return await handlers.handleResolveAnnotation(apiClient, args);
+            case 'semiont_generate_resource_from_selection':
+                return await handlers.handleGenerateResourceFromAnnotation(apiClient, args);
+            case 'semiont_get_contextual_summary':
+                return await handlers.handleGetContextualSummary(apiClient, args);
+            case 'semiont_get_schema_description':
+                return await handlers.handleGetSchemaDescription(apiClient);
+            case 'semiont_get_llm_context':
+                return await handlers.handleGetLLMContext(apiClient, args);
+            case 'semiont_get_resource_selections':
+                return await handlers.handleGetResourceAnnotations(apiClient, args);
+            case 'semiont_get_resource_highlights':
+                return await handlers.handleGetResourceHighlights(apiClient, args || {});
+            case 'semiont_get_resource_references':
+                return await handlers.handleGetResourceReferences(apiClient, args || {});
+            default:
+                throw new Error(`Unknown tool: ${name}`);
+        }
+    }
+    catch (error) {
+        return {
+            content: [{
+                    type: 'text',
+                    text: `Error calling Semiont API: ${error instanceof Error ? error.message : 'Unknown error'}`,
+                }],
+            isError: true,
+        };
+    }
+});
+// Start the server
+async function main() {
+    console.error('[MCP Server] Starting up...');
+    console.error('[MCP Server] Environment:', {
+        SEMIONT_ENV,
+        SEMIONT_API_URL,
+        NODE_ENV: process.env.NODE_ENV,
+        cwd: process.cwd()
+    });
+    const transport = new StdioServerTransport();
+    console.error('[MCP Server] Connecting to transport...');
+    await server.connect(transport);
+    console.error('[MCP Server] Connected successfully');
+    // Keep the server alive until it receives a termination signal
+    process.on('SIGINT', async () => {
+        console.error('[MCP Server] Received SIGINT, shutting down...');
+        await server.close();
+        process.exit(0);
+    });
+    process.on('SIGTERM', async () => {
+        console.error('[MCP Server] Received SIGTERM, shutting down...');
+        await server.close();
+        process.exit(0);
+    });
+    // Add handler for unexpected exits
+    process.on('exit', (code) => {
+        console.error(`[MCP Server] Process exiting with code ${code}`);
+    });
+    process.on('uncaughtException', (error) => {
+        console.error('[MCP Server] Uncaught exception:', error);
+        process.exit(1);
+    });
+    process.on('unhandledRejection', (reason, promise) => {
+        console.error('[MCP Server] Unhandled rejection at:', promise, 'reason:', reason);
+        process.exit(1);
+    });
+    console.error('[MCP Server] Setting up keep-alive...');
+    // Keep the process alive
+    // The server will handle incoming messages via the transport
+    await new Promise(() => {
+        console.error('[MCP Server] Keep-alive promise created, server should stay running...');
+        // Log periodic heartbeat to show we're still alive
+        setInterval(() => {
+            console.error(`[MCP Server] Still alive at ${new Date().toISOString()}`);
+        }, 30000); // Every 30 seconds
+    });
+}
+main().catch((error) => {
+    console.error('[MCP Server] Fatal error in main:', error);
+    process.exit(1);
+});
+//# sourceMappingURL=index.js.map

package/dist/mcp-server/index.js.map

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