@semiont/cli 0.1.0 → 0.2.0-build.3

package/dist/cli.mjs

@@ -16807,7 +16807,7 @@ var require_sse = __commonJS({
        * stream.close();
        * ```
        */
-      generateResourceFromAnnotation(resourceId, annotationId, request = {}) {
+      generateResourceFromAnnotation(resourceId, annotationId, request) {
         const resId = this.extractId(resourceId);
         const annId = this.extractId(annotationId);
         const url2 = `${this.baseUrl}/resources/${resId}/annotations/${annId}/generate-resource-stream`;
@@ -16960,6 +16960,54 @@ var require_sse = __commonJS({
           errorEvent: "comment-detection-error"
         });
       }
+      /**
+       * Detect tags in a resource (streaming)
+       *
+       * Streams tag detection progress via Server-Sent Events.
+       * Uses AI to identify passages serving specific structural roles
+       * (e.g., IRAC, IMRAD, Toulmin) and creates tag annotations with dual-body structure.
+       *
+       * @param resourceId - Resource URI or ID
+       * @param request - Detection configuration (schema and categories to detect)
+       * @returns SSE stream controller with progress/complete/error callbacks
+       *
+       * @example
+       * ```typescript
+       * const stream = sseClient.detectTags('http://localhost:4000/resources/doc-123', {
+       *   schemaId: 'legal-irac',
+       *   categories: ['Issue', 'Rule', 'Application', 'Conclusion']
+       * });
+       *
+       * stream.onProgress((progress) => {
+       *   console.log(`${progress.status}: ${progress.percentage}%`);
+       *   console.log(`Processing ${progress.currentCategory}...`);
+       * });
+       *
+       * stream.onComplete((result) => {
+       *   console.log(`Detection complete! Created ${result.tagsCreated} tags`);
+       * });
+       *
+       * stream.onError((error) => {
+       *   console.error('Detection failed:', error.message);
+       * });
+       *
+       * // Cleanup when done
+       * stream.close();
+       * ```
+       */
+      detectTags(resourceId, request) {
+        const id = this.extractId(resourceId);
+        const url2 = `${this.baseUrl}/resources/${id}/detect-tags-stream`;
+        return (0, stream_1.createSSEStream)(url2, {
+          method: "POST",
+          headers: this.getHeaders(),
+          body: JSON.stringify(request)
+        }, {
+          progressEvents: ["tag-detection-started", "tag-detection-progress"],
+          completeEvent: "tag-detection-complete",
+          errorEvent: "tag-detection-error"
+        });
+      }
       /**
        * Subscribe to resource events (long-lived stream)
        *
@@ -17292,6 +17340,13 @@ var require_client = __commonJS({
       async getResourceAnnotations(resourceUri) {
         return this.http.get(`${resourceUri}/annotations`).json();
       }
+      async getAnnotationLLMContext(resourceUri, annotationId, options) {
+        const searchParams = new URLSearchParams();
+        if (options?.contextWindow) {
+          searchParams.append("contextWindow", options.contextWindow.toString());
+        }
+        return this.http.get(`${resourceUri}/annotations/${annotationId}/llm-context`, { searchParams }).json();
+      }
       async getResourceReferencedBy(resourceUri) {
         return this.http.get(`${resourceUri}/referenced-by`).json();
       }
@@ -17409,16 +17464,6 @@ var require_client = __commonJS({
           searchParams.append("includeSummary", options.includeSummary.toString());
         return this.http.get(`${resourceUri}/llm-context`, { searchParams }).json();
       }
-      async getAnnotationLLMContext(annotationUri, options) {
-        const searchParams = new URLSearchParams();
-        if (options?.includeSourceContext !== void 0)
-          searchParams.append("includeSourceContext", options.includeSourceContext.toString());
-        if (options?.includeTargetContext !== void 0)
-          searchParams.append("includeTargetContext", options.includeTargetContext.toString());
-        if (options?.contextWindow !== void 0)
-          searchParams.append("contextWindow", options.contextWindow.toString());
-        return this.http.get(`${annotationUri}/llm-context`, { searchParams }).json();
-      }
       // ============================================================================
       // SYSTEM STATUS
       // ============================================================================
@@ -43065,14 +43110,37 @@ var require_arg = __commonJS({
 var require_package = __commonJS({
   "package.json"(exports, module) {
     module.exports = {
-      name: "semiont-cli",
-      version: "0.0.2",
+      name: "@semiont/cli",
+      version: "0.2.0",
       description: "Semiont CLI - Unified environment management tool",
       _comment: "AWS SDK dependencies (@aws-sdk/*) are only used by platforms/aws",
       type: "module",
       bin: {
         semiont: "./dist/cli.mjs"
       },
+      files: [
+        "dist",
+        "README.md",
+        "LICENSE"
+      ],
+      publishConfig: {
+        access: "public"
+      },
+      repository: {
+        type: "git",
+        url: "git+https://github.com/The-AI-Alliance/semiont.git",
+        directory: "apps/cli"
+      },
+      keywords: [
+        "semiont",
+        "cli",
+        "environment-management",
+        "devops",
+        "deployment",
+        "infrastructure"
+      ],
+      author: "Semiont Team",
+      license: "Apache-2.0",
       scripts: {
         build: "npm run typecheck && node build.mjs",
         "build:only": "node build.mjs",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@semiont/cli",
-  "version": "0.1.0",
+  "version": "0.2.0-build.3",
   "description": "Semiont CLI - Unified environment management tool",
   "_comment": "AWS SDK dependencies (@aws-sdk/*) are only used by platforms/aws",
   "type": "module",

package/dist/mcp-server/handlers-stubs.d.ts

@@ -1,40 +0,0 @@
-/**
- * Stub handlers for endpoints that were removed/renamed in the API
- * These return error messages indicating the endpoint is unavailable
- */
-export declare const handleDetectSelections: (_args: any) => {
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-};
-export declare const handleGetContextualSummary: (_args: any) => {
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-};
-export declare const handleGetSchemaDescription: (_args: any) => {
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-};
-export declare const handleGetLLMContext: (_args: any) => {
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-};
-export declare const handleGetResourceSelections: (_args: any) => {
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-};
-//# sourceMappingURL=handlers-stubs.d.ts.map

package/dist/mcp-server/handlers-stubs.d.ts.map

@@ -1 +0,0 @@
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package/dist/mcp-server/handlers-stubs.js

@@ -1,22 +0,0 @@
-/**
- * Stub handlers for endpoints that were removed/renamed in the API
- * These return error messages indicating the endpoint is unavailable
- */
-function createStubHandler(endpointName) {
-    return (_args) => {
-        return {
-            content: [{
-                    type: 'text',
-                    text: `Error: The ${endpointName} endpoint is no longer available in the current API version. This feature may have been removed or renamed.`,
-                }],
-            isError: true,
-        };
-    };
-}
-// Endpoints that don't exist in the current API
-export const handleDetectSelections = createStubHandler('detect-selections');
-export const handleGetContextualSummary = createStubHandler('contextual-summary');
-export const handleGetSchemaDescription = createStubHandler('schema-description');
-export const handleGetLLMContext = createStubHandler('llm-context');
-export const handleGetResourceSelections = createStubHandler('resource-selections');
-//# sourceMappingURL=handlers-stubs.js.map

package/dist/mcp-server/handlers-stubs.js.map

@@ -1 +0,0 @@
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package/dist/mcp-server/handlers.d.ts

@@ -1,96 +0,0 @@
-/**
- * Tool execution handlers using @semiont/api-client
- */
-import { SemiontApiClient } from '@semiont/api-client';
-export declare function handleCreateResource(client: SemiontApiClient, args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-}>;
-export declare function handleGetResource(client: SemiontApiClient, id: string): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-}>;
-export declare function handleListResources(client: SemiontApiClient, args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-}>;
-export declare function handleDetectAnnotations(client: SemiontApiClient, args: any): Promise<{
-    content: Array<{
-        type: "text";
-        text: string;
-    }>;
-    isError?: boolean;
-}>;
-export declare function handleCreateAnnotation(client: SemiontApiClient, args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-}>;
-export declare function handleSaveAnnotation(_client: SemiontApiClient, _args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-}>;
-export declare function handleResolveAnnotation(client: SemiontApiClient, args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-}>;
-export declare function handleGenerateResourceFromAnnotation(client: SemiontApiClient, args: any): Promise<{
-    content: Array<{
-        type: "text";
-        text: string;
-    }>;
-    isError?: boolean;
-}>;
-export declare function handleGetContextualSummary(_client: SemiontApiClient, _args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-}>;
-export declare function handleGetSchemaDescription(_client: SemiontApiClient): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-}>;
-export declare function handleGetLLMContext(_client: SemiontApiClient, _args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-}>;
-export declare function handleGetResourceAnnotations(_client: SemiontApiClient, _args: any): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-    isError: boolean;
-}>;
-export declare function handleGetResourceHighlights(client: SemiontApiClient, args: Record<string, unknown>): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-}>;
-export declare function handleGetResourceReferences(client: SemiontApiClient, args: Record<string, unknown>): Promise<{
-    content: {
-        type: "text";
-        text: string;
-    }[];
-}>;
-//# sourceMappingURL=handlers.d.ts.map

package/dist/mcp-server/handlers.d.ts.map

@@ -1 +0,0 @@
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package/dist/mcp-server/handlers.js

@@ -1,253 +0,0 @@
-/**
- * Tool execution handlers using @semiont/api-client
- */
-import { getExactText, getBodySource, resourceUri, annotationUri } from '@semiont/api-client';
-export async function handleCreateResource(client, args) {
-    // Create File from content string for multipart/form-data upload
-    const format = args?.contentType || 'text/plain';
-    const content = args?.content || '';
-    const blob = new Blob([content], { type: format });
-    const file = new File([blob], args?.name + '.txt', { type: format });
-    const data = await client.createResource({
-        name: args?.name,
-        file: file,
-        format: format,
-        entityTypes: args?.entityTypes || [],
-    });
-    return {
-        content: [{
-                type: 'text',
-                text: `Resource created successfully:\nID: ${data.resource.id}\nName: ${data.resource.name}\nEntity Types: ${data.resource.entityTypes?.join(', ') || 'None'}`,
-            }],
-    };
-}
-export async function handleGetResource(client, id) {
-    const data = await client.getResource(resourceUri(id));
-    return {
-        content: [{
-                type: 'text',
-                text: JSON.stringify(data, null, 2),
-            }],
-    };
-}
-export async function handleListResources(client, args) {
-    const data = await client.listResources(args?.limit, args?.archived ?? false);
-    return {
-        content: [{
-                type: 'text',
-                text: `Found ${data.total} resources:\n${data.resources.map((d) => `- ${d.name} (${d.id}) - ${d.entityTypes?.join(', ') || 'No types'}`).join('\n')}`,
-            }],
-    };
-}
-export async function handleDetectAnnotations(client, args) {
-    const rUri = resourceUri(args?.resourceId);
-    const entityTypes = args?.entityTypes || [];
-    return new Promise((resolve) => {
-        const stream = client.sse.detectAnnotations(rUri, { entityTypes });
-        const progressMessages = [];
-        stream.onProgress((progress) => {
-            const msg = progress.status === 'scanning'
-                ? `Scanning for ${progress.currentEntityType}... (${progress.processedEntityTypes}/${progress.totalEntityTypes})`
-                : `Status: ${progress.status}`;
-            progressMessages.push(msg);
-            console.error(msg); // Send to stderr for MCP progress
-        });
-        stream.onComplete((result) => {
-            resolve({
-                content: [{
-                        type: 'text',
-                        text: `Entity detection complete!\nFound ${result.foundCount || 0} entities\n\nProgress:\n${progressMessages.join('\n')}`,
-                    }],
-            });
-        });
-        stream.onError((error) => {
-            resolve({
-                content: [{
-                        type: 'text',
-                        text: `Entity detection failed: ${error.message}`,
-                    }],
-                isError: true,
-            });
-        });
-    });
-}
-export async function handleCreateAnnotation(client, args) {
-    const selectionData = args?.selectionData || {};
-    const entityTypes = args?.entityTypes || [];
-    // Convert entityTypes to W3C TextualBody items
-    const body = entityTypes.map((value) => ({
-        type: 'TextualBody',
-        value,
-        purpose: 'tagging',
-    }));
-    const rUri = resourceUri(args?.resourceId);
-    const data = await client.createAnnotation(rUri, {
-        motivation: 'highlighting',
-        target: {
-            source: args?.resourceId,
-            selector: [
-                {
-                    type: 'TextPositionSelector',
-                    start: selectionData.offset || 0,
-                    end: (selectionData.offset || 0) + (selectionData.length || 0),
-                },
-                {
-                    type: 'TextQuoteSelector',
-                    exact: selectionData.text || '',
-                },
-            ],
-        },
-        body,
-    });
-    // Extract text using SDK utility
-    const targetSelector = typeof data.annotation.target === 'string'
-        ? undefined
-        : data.annotation.target.selector;
-    const exactText = getExactText(targetSelector);
-    return {
-        content: [{
-                type: 'text',
-                text: `Annotation created:\nID: ${data.annotation.id}\nMotivation: ${data.annotation.motivation}\nText: ${exactText}`,
-            }],
-    };
-}
-export async function handleSaveAnnotation(_client, _args) {
-    // NOTE: The /save endpoint was removed from the API
-    // This functionality may have been merged into the main annotation creation
-    return {
-        content: [{
-                type: 'text',
-                text: `Error: The save annotation endpoint is no longer available. Annotations are automatically persisted when created.`,
-            }],
-        isError: true,
-    };
-}
-export async function handleResolveAnnotation(client, args) {
-    const data = await client.updateAnnotationBody(args?.selectionId, {
-        resourceId: args?.sourceResourceId,
-        operations: [{
-                op: 'add',
-                item: {
-                    type: 'SpecificResource',
-                    source: args?.resourceId,
-                    purpose: 'linking',
-                },
-            }],
-    });
-    return {
-        content: [{
-                type: 'text',
-                text: `Annotation linked to resource:\nAnnotation ID: ${data.annotation.id}\nLinked to: ${args?.resourceId || 'null'}`,
-            }],
-    };
-}
-export async function handleGenerateResourceFromAnnotation(client, args) {
-    const rUri = resourceUri(args?.resourceId);
-    const aUri = annotationUri(args?.annotationId);
-    const request = {
-        title: args?.title,
-        prompt: args?.prompt,
-        language: args?.language,
-    };
-    return new Promise((resolve) => {
-        const stream = client.sse.generateResourceFromAnnotation(rUri, aUri, request);
-        const progressMessages = [];
-        stream.onProgress((progress) => {
-            const msg = `${progress.status}: ${progress.percentage}% - ${progress.message || ''}`;
-            progressMessages.push(msg);
-            console.error(msg); // Send to stderr for MCP progress
-        });
-        stream.onComplete((result) => {
-            resolve({
-                content: [{
-                        type: 'text',
-                        text: `Resource generation complete!\nResource ID: ${result.resourceId || 'unknown'}\nResource Name: ${result.resourceName || 'unknown'}\n\nProgress:\n${progressMessages.join('\n')}`,
-                    }],
-            });
-        });
-        stream.onError((error) => {
-            resolve({
-                content: [{
-                        type: 'text',
-                        text: `Resource generation failed: ${error.message}`,
-                    }],
-                isError: true,
-            });
-        });
-    });
-}
-export async function handleGetContextualSummary(_client, _args) {
-    // NOTE: /contextual-summary endpoint was removed or renamed
-    // Use /api/annotations/{id}/summary or /api/annotations/{id}/context instead
-    return {
-        content: [{
-                type: 'text',
-                text: `Error: The contextual-summary endpoint is no longer available. Use /summary or /context endpoints instead.`,
-            }],
-        isError: true,
-    };
-}
-export async function handleGetSchemaDescription(_client) {
-    // NOTE: /schema-description endpoint was removed
-    return {
-        content: [{
-                type: 'text',
-                text: `Error: The schema-description endpoint is no longer available.`,
-            }],
-        isError: true,
-    };
-}
-export async function handleGetLLMContext(_client, _args) {
-    // NOTE: Endpoint path may have changed - need to verify correct path
-    return {
-        content: [{
-                type: 'text',
-                text: `Error: The llm-context endpoint path needs to be updated.`,
-            }],
-        isError: true,
-    };
-}
-export async function handleGetResourceAnnotations(_client, _args) {
-    // NOTE: Use /api/resources/{id}/annotations instead
-    return {
-        content: [{
-                type: 'text',
-                text: `Error: This endpoint needs to be updated to use /api/resources/{id}/annotations.`,
-            }],
-        isError: true,
-    };
-}
-export async function handleGetResourceHighlights(client, args) {
-    const data = await client.getResourceAnnotations(resourceUri(args?.resourceId));
-    const highlights = data.annotations.filter(a => a.motivation === 'highlighting');
-    return {
-        content: [{
-                type: 'text',
-                text: `Found ${highlights.length} highlights in resource:\n${highlights.map(h => {
-                    // Safely get exact text from TextQuoteSelector
-                    const targetSelector = typeof h.target === 'string' ? undefined : h.target.selector;
-                    const selectors = Array.isArray(targetSelector) ? targetSelector : [targetSelector];
-                    const textQuoteSelector = selectors.find(s => s?.type === 'TextQuoteSelector');
-                    const text = textQuoteSelector && 'exact' in textQuoteSelector ? textQuoteSelector.exact : h.id;
-                    return `- ${text}${h.creator ? ` (creator: ${h.creator.name})` : ''}`;
-                }).join('\n')}`,
-            }],
-    };
-}
-export async function handleGetResourceReferences(client, args) {
-    const data = await client.getResourceAnnotations(resourceUri(args?.resourceId));
-    const references = data.annotations.filter(a => a.motivation === 'linking');
-    return {
-        content: [{
-                type: 'text',
-                text: `Found ${references.length} references in resource:\n${references.map(r => {
-                    // Use SDK utilities to extract text and source
-                    const targetSelector = typeof r.target === 'string' ? undefined : r.target.selector;
-                    const text = getExactText(targetSelector) || r.id;
-                    const source = getBodySource(r.body);
-                    return `- ${text} → ${source || 'stub (no link)'}`;
-                }).join('\n')}`,
-            }],
-    };
-}
-//# sourceMappingURL=handlers.js.map

package/dist/mcp-server/handlers.js.map

@@ -1 +0,0 @@
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package/dist/mcp-server/index.d.ts

@@ -1,3 +0,0 @@
-#!/usr/bin/env node
-export {};
-//# sourceMappingURL=index.d.ts.map

package/dist/mcp-server/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":""}

package/dist/mcp-server/index.js

@@ -1,365 +0,0 @@
-#!/usr/bin/env node
-import { Server } from '@modelcontextprotocol/sdk/server/index.js';
-import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
-import { CallToolRequestSchema, ListToolsRequestSchema, ListResourcesRequestSchema, ListPromptsRequestSchema, } from '@modelcontextprotocol/sdk/types.js';
-import { SemiontApiClient, baseUrl, accessToken } from '@semiont/api-client';
-/**
- * Semiont MCP Server
- *
- * This MCP server provides access to the Semiont API.
- * It handles authentication and makes the API available to AI applications.
- */
-import * as handlers from './handlers.js';
-// Configuration from environment variables
-if (!process.env.SEMIONT_ENV) {
-    throw new Error('SEMIONT_ENV environment variable is required');
-}
-if (!process.env.SEMIONT_API_URL) {
-    throw new Error('SEMIONT_API_URL environment variable is required');
-}
-if (!process.env.SEMIONT_ACCESS_TOKEN) {
-    throw new Error('SEMIONT_ACCESS_TOKEN environment variable is required');
-}
-const SEMIONT_ENV = process.env.SEMIONT_ENV;
-const SEMIONT_API_URL = process.env.SEMIONT_API_URL;
-const SEMIONT_ACCESS_TOKEN = process.env.SEMIONT_ACCESS_TOKEN;
-// Create the Semiont API client
-const apiClient = new SemiontApiClient({
-    baseUrl: baseUrl(SEMIONT_API_URL),
-    accessToken: accessToken(SEMIONT_ACCESS_TOKEN),
-});
-// Create the MCP server
-const server = new Server({
-    name: 'semiont-mcp',
-    version: '0.1.0',
-}, {
-    capabilities: {
-        tools: {},
-        resources: {},
-        prompts: {},
-    },
-});
-// Define all available tools
-server.setRequestHandler(ListToolsRequestSchema, async () => {
-    return {
-        tools: [
-            // Resource Management
-            {
-                name: 'semiont_create_resource',
-                description: 'Create a new resource in the knowledge graph',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        name: { type: 'string', description: 'Resource name' },
-                        content: { type: 'string', description: 'Resource content' },
-                        entityTypes: {
-                            type: 'array',
-                            items: { type: 'string' },
-                            description: 'Entity types (e.g., Person, Topic, Concept)'
-                        },
-                        contentType: { type: 'string', description: 'Content MIME type (default: text/plain)' },
-                        metadata: { type: 'object', description: 'Additional metadata' },
-                    },
-                    required: ['name', 'content'],
-                },
-            },
-            {
-                name: 'semiont_get_resource',
-                description: 'Get a resource by ID with its selections',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        id: { type: 'string', description: 'Resource ID' },
-                    },
-                    required: ['id'],
-                },
-            },
-            {
-                name: 'semiont_list_resources',
-                description: 'List and search resources',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        entityTypes: { type: 'string', description: 'Comma-separated entity types to filter' },
-                        search: { type: 'string', description: 'Search query' },
-                        archived: { type: 'boolean', description: 'Filter by archived status (default: false - shows only non-archived resources)' },
-                        limit: { type: 'number', description: 'Maximum results (default: 20)' },
-                        offset: { type: 'number', description: 'Offset for pagination (default: 0)' },
-                    },
-                },
-            },
-            {
-                name: 'semiont_detect_selections',
-                description: 'Detect selections (entities, references) in a resource',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        resourceId: { type: 'string', description: 'Resource ID' },
-                        types: {
-                            type: 'array',
-                            items: { type: 'string' },
-                            description: 'Types to detect (default: entities, concepts)'
-                        },
-                        confidence: { type: 'number', description: 'Minimum confidence (0-1, default: 0.7)' },
-                    },
-                    required: ['resourceId'],
-                },
-            },
-            // Selection Management
-            {
-                name: 'semiont_create_selection',
-                description: 'Create a new selection in a resource',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        resourceId: { type: 'string', description: 'Resource ID' },
-                        selectionType: { type: 'string', description: 'Selection type (e.g., text_span)' },
-                        selectionData: {
-                            type: 'object',
-                            description: 'Selection data (offset, length, text, etc.)',
-                            properties: {
-                                type: { type: 'string' },
-                                offset: { type: 'number' },
-                                length: { type: 'number' },
-                                text: { type: 'string' },
-                            },
-                        },
-                        entityTypes: {
-                            type: 'array',
-                            items: { type: 'string' },
-                            description: 'Entity types for this selection'
-                        },
-                        provisional: { type: 'boolean', description: 'Is this provisional?' },
-                    },
-                    required: ['resourceId', 'selectionType', 'selectionData'],
-                },
-            },
-            {
-                name: 'semiont_save_selection',
-                description: 'Save a selection as a highlight',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        selectionId: { type: 'string', description: 'Selection ID' },
-                        metadata: { type: 'object', description: 'Additional metadata' },
-                    },
-                    required: ['selectionId'],
-                },
-            },
-            {
-                name: 'semiont_resolve_selection',
-                description: 'Link a selection to a resource (adds SpecificResource to annotation body)',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        selectionId: { type: 'string', description: 'Selection ID' },
-                        resourceId: { type: 'string', description: 'Target resource ID to link to' },
-                    },
-                    required: ['selectionId', 'resourceId'],
-                },
-            },
-            // Resource Generation from Selections
-            {
-                name: 'semiont_generate_resource_from_selection',
-                description: 'Generate a resource with AI-generated content from a selection',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        selectionId: { type: 'string', description: 'Selection ID' },
-                        name: { type: 'string', description: 'Resource name (optional)' },
-                        entityTypes: {
-                            type: 'array',
-                            items: { type: 'string' },
-                            description: 'Entity types for the new resource'
-                        },
-                        prompt: { type: 'string', description: 'AI generation prompt' },
-                    },
-                    required: ['selectionId'],
-                },
-            },
-            // Context and Analysis
-            {
-                name: 'semiont_get_contextual_summary',
-                description: 'Get a contextual summary for a selection',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        selectionId: { type: 'string', description: 'Selection ID' },
-                        includeRelated: { type: 'boolean', description: 'Include related resources' },
-                        maxRelated: { type: 'number', description: 'Max related resources' },
-                    },
-                    required: ['selectionId'],
-                },
-            },
-            {
-                name: 'semiont_get_schema_description',
-                description: 'Get a natural language description of the graph schema',
-                inputSchema: {
-                    type: 'object',
-                    properties: {},
-                },
-            },
-            {
-                name: 'semiont_get_llm_context',
-                description: 'Get LLM-suitable context for a resource and optional selection',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        resourceId: { type: 'string', description: 'Resource ID' },
-                        selectionId: { type: 'string', description: 'Optional selection ID' },
-                        includeReferences: { type: 'boolean', description: 'Include references (default: true)' },
-                        includeSelections: { type: 'boolean', description: 'Include selections (default: true)' },
-                        maxReferencedResources: { type: 'number', description: 'Max referenced docs (default: 5)' },
-                        contextWindow: { type: 'number', description: 'Context window size (default: 1000)' },
-                    },
-                    required: ['resourceId'],
-                },
-            },
-            // Relationship Queries
-            {
-                name: 'semiont_get_resource_selections',
-                description: 'Get all selections in a resource',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        resourceId: { type: 'string', description: 'Resource ID' },
-                    },
-                    required: ['resourceId'],
-                },
-            },
-            {
-                name: 'semiont_get_resource_highlights',
-                description: 'Get saved highlights in a resource',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        resourceId: { type: 'string', description: 'Resource ID' },
-                    },
-                    required: ['resourceId'],
-                },
-            },
-            {
-                name: 'semiont_get_resource_references',
-                description: 'Get linked references in a resource',
-                inputSchema: {
-                    type: 'object',
-                    properties: {
-                        resourceId: { type: 'string', description: 'Resource ID' },
-                    },
-                    required: ['resourceId'],
-                },
-            },
-        ],
-    };
-});
-// Handle resources list (empty - we don't provide resources)
-server.setRequestHandler(ListResourcesRequestSchema, async () => {
-    return {
-        resources: [],
-    };
-});
-// Handle prompts list (empty - we don't provide prompts)
-server.setRequestHandler(ListPromptsRequestSchema, async () => {
-    return {
-        prompts: [],
-    };
-});
-// Handle tool execution
-server.setRequestHandler(CallToolRequestSchema, async (request) => {
-    const { name, arguments: args } = request.params;
-    try {
-        switch (name) {
-            case 'semiont_create_resource':
-                return await handlers.handleCreateResource(apiClient, args);
-            case 'semiont_get_resource':
-                return await handlers.handleGetResource(apiClient, args?.id);
-            case 'semiont_list_resources':
-                return await handlers.handleListResources(apiClient, args);
-            case 'semiont_detect_selections':
-                return await handlers.handleDetectAnnotations(apiClient, args);
-            case 'semiont_create_selection':
-                return await handlers.handleCreateAnnotation(apiClient, args);
-            case 'semiont_save_selection':
-                return await handlers.handleSaveAnnotation(apiClient, args);
-            case 'semiont_resolve_selection':
-                return await handlers.handleResolveAnnotation(apiClient, args);
-            case 'semiont_generate_resource_from_selection':
-                return await handlers.handleGenerateResourceFromAnnotation(apiClient, args);
-            case 'semiont_get_contextual_summary':
-                return await handlers.handleGetContextualSummary(apiClient, args);
-            case 'semiont_get_schema_description':
-                return await handlers.handleGetSchemaDescription(apiClient);
-            case 'semiont_get_llm_context':
-                return await handlers.handleGetLLMContext(apiClient, args);
-            case 'semiont_get_resource_selections':
-                return await handlers.handleGetResourceAnnotations(apiClient, args);
-            case 'semiont_get_resource_highlights':
-                return await handlers.handleGetResourceHighlights(apiClient, args || {});
-            case 'semiont_get_resource_references':
-                return await handlers.handleGetResourceReferences(apiClient, args || {});
-            default:
-                throw new Error(`Unknown tool: ${name}`);
-        }
-    }
-    catch (error) {
-        return {
-            content: [{
-                    type: 'text',
-                    text: `Error calling Semiont API: ${error instanceof Error ? error.message : 'Unknown error'}`,
-                }],
-            isError: true,
-        };
-    }
-});
-// Start the server
-async function main() {
-    console.error('[MCP Server] Starting up...');
-    console.error('[MCP Server] Environment:', {
-        SEMIONT_ENV,
-        SEMIONT_API_URL,
-        NODE_ENV: process.env.NODE_ENV,
-        cwd: process.cwd()
-    });
-    const transport = new StdioServerTransport();
-    console.error('[MCP Server] Connecting to transport...');
-    await server.connect(transport);
-    console.error('[MCP Server] Connected successfully');
-    // Keep the server alive until it receives a termination signal
-    process.on('SIGINT', async () => {
-        console.error('[MCP Server] Received SIGINT, shutting down...');
-        await server.close();
-        process.exit(0);
-    });
-    process.on('SIGTERM', async () => {
-        console.error('[MCP Server] Received SIGTERM, shutting down...');
-        await server.close();
-        process.exit(0);
-    });
-    // Add handler for unexpected exits
-    process.on('exit', (code) => {
-        console.error(`[MCP Server] Process exiting with code ${code}`);
-    });
-    process.on('uncaughtException', (error) => {
-        console.error('[MCP Server] Uncaught exception:', error);
-        process.exit(1);
-    });
-    process.on('unhandledRejection', (reason, promise) => {
-        console.error('[MCP Server] Unhandled rejection at:', promise, 'reason:', reason);
-        process.exit(1);
-    });
-    console.error('[MCP Server] Setting up keep-alive...');
-    // Keep the process alive
-    // The server will handle incoming messages via the transport
-    await new Promise(() => {
-        console.error('[MCP Server] Keep-alive promise created, server should stay running...');
-        // Log periodic heartbeat to show we're still alive
-        setInterval(() => {
-            console.error(`[MCP Server] Still alive at ${new Date().toISOString()}`);
-        }, 30000); // Every 30 seconds
-    });
-}
-main().catch((error) => {
-    console.error('[MCP Server] Fatal error in main:', error);
-    process.exit(1);
-});
-//# sourceMappingURL=index.js.map

package/dist/mcp-server/index.js.map

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package/dist/mcp-server/index.test.d.ts

@@ -1,7 +0,0 @@
-/**
- * MCP Server Tests
- *
- * Tests for the Semiont MCP (Model Context Protocol) server
- */
-export {};
-//# sourceMappingURL=index.test.d.ts.map

package/dist/mcp-server/index.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.test.d.ts","sourceRoot":"","sources":["../src/index.test.ts"],"names":[],"mappings":"AAAA;;;;GAIG"}

package/dist/mcp-server/index.test.js

@@ -1,183 +0,0 @@
-/**
- * MCP Server Tests
- *
- * Tests for the Semiont MCP (Model Context Protocol) server
- */
-import { describe, it, expect, beforeEach, afterEach, vi } from 'vitest';
-// Mock environment variables
-beforeEach(() => {
-    process.env.SEMIONT_API_URL = 'http://test.api.semiont.com';
-    process.env.SEMIONT_API_TOKEN = 'test-token-123';
-});
-afterEach(() => {
-    delete process.env.SEMIONT_API_URL;
-    delete process.env.SEMIONT_API_TOKEN;
-    vi.clearAllMocks();
-});
-// Mock fetch globally
-global.fetch = vi.fn();
-describe('MCP Server', () => {
-    describe('Tool Registration', () => {
-        it('should register semiont_hello tool', async () => {
-            // Import the server module to trigger registration
-            await import('./index.js');
-            // The server should have registered the semiont_hello tool
-            // We can't directly test the Server instance, but we can verify
-            // the module loads without errors
-            expect(process.env.SEMIONT_API_URL).toBe('http://test.api.semiont.com');
-            expect(process.env.SEMIONT_API_TOKEN).toBe('test-token-123');
-        });
-    });
-    describe('Tool Execution', () => {
-        beforeEach(() => {
-            // Reset fetch mock
-            global.fetch.mockReset();
-        });
-        it('should call API with authentication for hello tool', async () => {
-            // Mock successful API response
-            global.fetch.mockResolvedValue({
-                ok: true,
-                json: async () => ({
-                    message: 'Hello, World!',
-                    platform: 'test',
-                    timestamp: new Date().toISOString(),
-                    user: 'test@example.com'
-                })
-            });
-            // Since we can't directly test the server handlers without
-            // the full MCP infrastructure, we test the API interaction pattern
-            const url = `${process.env.SEMIONT_API_URL}/api/hello`;
-            const response = await fetch(url, {
-                method: 'GET',
-                headers: {
-                    'Authorization': `Bearer ${process.env.SEMIONT_API_TOKEN}`,
-                    'Content-Type': 'application/json',
-                },
-            });
-            expect(global.fetch).toHaveBeenCalledWith('http://test.api.semiont.com/api/hello', expect.objectContaining({
-                method: 'GET',
-                headers: expect.objectContaining({
-                    'Authorization': 'Bearer test-token-123',
-                    'Content-Type': 'application/json',
-                })
-            }));
-            const data = await response.json();
-            expect(data).toMatchObject({
-                message: 'Hello, World!',
-                platform: 'test',
-                user: 'test@example.com'
-            });
-        });
-        it('should handle API authentication failure', async () => {
-            // Mock 401 response
-            global.fetch.mockResolvedValue({
-                ok: false,
-                status: 401,
-                statusText: 'Unauthorized'
-            });
-            const url = `${process.env.SEMIONT_API_URL}/api/hello`;
-            const response = await fetch(url, {
-                method: 'GET',
-                headers: {
-                    'Authorization': `Bearer ${process.env.SEMIONT_API_TOKEN}`,
-                    'Content-Type': 'application/json',
-                },
-            });
-            expect(response.ok).toBe(false);
-            expect(response.status).toBe(401);
-        });
-        it('should call API with name parameter when provided', async () => {
-            const testName = 'TestUser';
-            // Mock successful API response
-            global.fetch.mockResolvedValue({
-                ok: true,
-                json: async () => ({
-                    message: `Hello, ${testName}!`,
-                    platform: 'test',
-                    timestamp: new Date().toISOString(),
-                    user: 'test@example.com'
-                })
-            });
-            const url = `${process.env.SEMIONT_API_URL}/api/hello/${encodeURIComponent(testName)}`;
-            const response = await fetch(url, {
-                method: 'GET',
-                headers: {
-                    'Authorization': `Bearer ${process.env.SEMIONT_API_TOKEN}`,
-                    'Content-Type': 'application/json',
-                },
-            });
-            expect(global.fetch).toHaveBeenCalledWith(`http://test.api.semiont.com/api/hello/${testName}`, expect.anything());
-            const data = await response.json();
-            expect(data.message).toContain(testName);
-        });
-        it('should handle network errors gracefully', async () => {
-            // Mock network error
-            global.fetch.mockRejectedValue(new Error('Network error'));
-            const url = `${process.env.SEMIONT_API_URL}/api/hello`;
-            await expect(fetch(url, {
-                method: 'GET',
-                headers: {
-                    'Authorization': `Bearer ${process.env.SEMIONT_API_TOKEN}`,
-                    'Content-Type': 'application/json',
-                },
-            })).rejects.toThrow('Network error');
-        });
-    });
-    describe('Environment Configuration', () => {
-        it('should use default API URL when not specified', async () => {
-            delete process.env.SEMIONT_API_URL;
-            // Re-import to get default values
-            const module = await import('./index.js');
-            // The module should use the default URL
-            // Since we can't access the const directly, we verify it doesn't crash
-            expect(module).toBeDefined();
-        });
-        it('should handle missing API token', async () => {
-            delete process.env.SEMIONT_API_TOKEN;
-            // Mock API call without token
-            global.fetch.mockResolvedValue({
-                ok: false,
-                status: 401,
-                statusText: 'Unauthorized'
-            });
-            const url = 'http://localhost:4000/api/hello';
-            const response = await fetch(url, {
-                method: 'GET',
-                headers: {
-                    'Authorization': 'Bearer ',
-                    'Content-Type': 'application/json',
-                },
-            });
-            expect(response.status).toBe(401);
-        });
-    });
-    describe('Input Validation', () => {
-        it('should handle name parameter with special characters', () => {
-            const specialName = 'Test User & Co. <script>';
-            const encoded = encodeURIComponent(specialName);
-            expect(encoded).toBe('Test%20User%20%26%20Co.%20%3Cscript%3E');
-            // Verify the URL is properly constructed
-            const url = `http://test.api.semiont.com/api/hello/${encoded}`;
-            expect(url).toContain('Test%20User%20%26%20Co.%20%3Cscript%3E');
-        });
-        it('should handle very long name parameters', () => {
-            const longName = 'A'.repeat(150); // Exceeds typical 100 char limit
-            const encoded = encodeURIComponent(longName);
-            // The encoding should work regardless of length
-            expect(encoded).toBe(longName);
-            // Server should handle length validation
-            const url = `http://test.api.semiont.com/api/hello/${encoded}`;
-            expect(url.length).toBeGreaterThan(150);
-        });
-        it('should handle empty name parameter', () => {
-            const emptyName = '';
-            const encoded = encodeURIComponent(emptyName);
-            expect(encoded).toBe('');
-            // Should use the base URL without name
-            const baseUrl = 'http://test.api.semiont.com/api/hello';
-            const url = emptyName ? `${baseUrl}/${encoded}` : baseUrl;
-            expect(url).toBe(baseUrl);
-        });
-    });
-});
-//# sourceMappingURL=index.test.js.map

package/dist/mcp-server/index.test.js.map

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