@selvakumaresra/specship 0.1.2 → 0.1.3

package/dist/bin/specship.js

@@ -1,2018 +0,0 @@
-#!/usr/bin/env node
-"use strict";
-/**
- * SpecShip CLI
- *
- * Command-line interface for SpecShip code intelligence.
- *
- * Usage:
- *   specship                    Run interactive installer (when no args)
- *   specship install            Run interactive installer
- *   specship uninstall          Remove SpecShip from your agents
- *   specship init [path]        Initialize SpecShip in a project
- *   specship uninit [path]      Remove SpecShip from a project
- *   specship index [path]       Index all files in the project
- *   specship sync [path]        Sync changes since last index
- *   specship status [path]      Show index status
- *   specship query <search>     Search for symbols
- *   specship files [options]    Show project file structure
- *   specship context <task>     Build context for a task
- *   specship callers <symbol>   Find what calls a function/method
- *   specship callees <symbol>   Find what a function/method calls
- *   specship impact <symbol>    Analyze what code is affected by changing a symbol
- *   specship affected [files]   Find test files affected by changes
- */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-const commander_1 = require("commander");
-const path = __importStar(require("path"));
-const fs = __importStar(require("fs"));
-const os = __importStar(require("os"));
-const directory_1 = require("../directory");
-const worktree_1 = require("../sync/worktree");
-const shimmer_progress_1 = require("../ui/shimmer-progress");
-const glyphs_1 = require("../ui/glyphs");
-const node_version_check_1 = require("./node-version-check");
-const wasm_runtime_flags_1 = require("../extraction/wasm-runtime-flags");
-// Lazy-load heavy modules (SpecShip, runInstaller) to keep CLI startup fast.
-async function loadSpecShip() {
-    try {
-        return await Promise.resolve().then(() => __importStar(require('../index')));
-    }
-    catch (err) {
-        const msg = err instanceof Error ? err.message : String(err);
-        console.error(`\x1b[31m${(0, glyphs_1.getGlyphs)().err}\x1b[0m Failed to load SpecShip modules.`);
-        console.error(`\n  Node: ${process.version}  Platform: ${process.platform} ${process.arch}`);
-        console.error(`\n  Error: ${msg}`);
-        console.error('\n  Try reinstalling with: npm install -g @selvakumaresra/specship\n');
-        process.exit(1);
-    }
-}
-async function loadServerPackage() {
-    // Resolution order:
-    //   1. Bundled mode — `dist/server/index.js` next to this CLI. This is
-    //      what every `npm i -g @selvakumaresra/specship` install hits, since
-    //      the publish pipeline copies the compiled server into the root's
-    //      `dist/`.
-    //   2. npm dep `@selvakumaresra/specship-server` if some downstream
-    //      consumer ever wires it as a separate package (kept for forward
-    //      compatibility — not the shipped path).
-    //   3. Dev/workspace sibling: `packages/server/dist/index.js` for
-    //      running from a checkout without a prior `npm run build`.
-    const candidates = [
-        path.resolve(__dirname, '..', 'server', 'index.js'),
-        '@selvakumaresra/specship-server',
-        path.resolve(__dirname, '..', '..', 'packages', 'server', 'dist', 'index.js'),
-        path.resolve(__dirname, '..', '..', '..', 'packages', 'server', 'dist', 'index.js'),
-    ];
-    let lastErr = null;
-    for (const c of candidates) {
-        try {
-            return (await Promise.resolve(`${c}`).then(s => __importStar(require(s))));
-        }
-        catch (e) {
-            lastErr = e;
-        }
-    }
-    console.error(`\x1b[31m${(0, glyphs_1.getGlyphs)().err}\x1b[0m Could not load the bundled HTTP server. Re-run \`npm run build\` (or the bundled npm install is corrupt).`);
-    if (lastErr)
-        console.error('  ' + (lastErr instanceof Error ? lastErr.message : String(lastErr)));
-    process.exit(1);
-}
-/**
- * The JSONL ingest watcher now ships inside `@selvakumaresra/specship-server`
- * itself — `createServer({ ingest: true })` starts it. No separate package.
- */
-/**
- * Auto-pick a default project for `specship serve --ui` when the user
- * didn't pass `-p` and the cwd isn't initialized either. Walks
- * `~/.claude/projects/*` (Claude Code's per-project transcript dirs),
- * decodes each slug back to a real path, and returns the most-recently-
- * touched one that's still on disk AND has been `specship init`'d.
- *
- * Returns null when nothing qualifies — the server boots projectless and
- * the desktop UI prompts the user to pick.
- */
-async function pickRecentInitializedProject() {
-    const claudeRoot = path.join(os.homedir(), '.claude', 'projects');
-    let entries;
-    try {
-        entries = fs.readdirSync(claudeRoot, { withFileTypes: true });
-    }
-    catch {
-        return null;
-    }
-    const candidates = [];
-    for (const ent of entries) {
-        if (!ent.isDirectory())
-            continue;
-        const slug = ent.name;
-        // Same encoding the server's decodeProjectSlug uses: '-' → '/'.
-        const decoded = slug.startsWith('-') ? '/' + slug.slice(1).replace(/-/g, '/') : slug;
-        try {
-            const st = fs.statSync(decoded);
-            if (!st.isDirectory())
-                continue;
-        }
-        catch {
-            continue;
-        }
-        if (!(0, directory_1.isInitialized)(decoded))
-            continue;
-        // Use the newest .jsonl mtime in the slug dir as the activity signal.
-        let lastTouched = 0;
-        try {
-            const files = fs.readdirSync(path.join(claudeRoot, slug), { withFileTypes: true });
-            for (const f of files) {
-                if (!f.isFile() || !f.name.toLowerCase().endsWith('.jsonl'))
-                    continue;
-                try {
-                    const st = fs.statSync(path.join(claudeRoot, slug, f.name));
-                    if (st.mtimeMs > lastTouched)
-                        lastTouched = st.mtimeMs;
-                }
-                catch { /* ignore */ }
-            }
-        }
-        catch { /* ignore */ }
-        candidates.push({ decoded, lastTouched });
-    }
-    candidates.sort((a, b) => b.lastTouched - a.lastTouched);
-    return candidates[0]?.decoded ?? null;
-}
-/**
- * Locate the built Angular UI for `specship serve --ui`. Mirrors the
- * lookup order in `packages/server/src/cli.ts:locateWebDir` so both entry
- * points behave identically. Returns null when nothing is found — the
- * server then runs API-only.
- */
-function locateWebDir(explicit) {
-    const envDir = process.env.SPECSHIP_WEB_DIR ?? process.env.SPECSHIP_WEB_DIR;
-    const candidates = [];
-    if (explicit)
-        candidates.push(path.resolve(explicit));
-    if (envDir)
-        candidates.push(path.resolve(envDir));
-    // 1. Bundled mode — `dist/web/` next to this CLI. This is what every
-    //    `npm i -g @selvakumaresra/specship` install hits.
-    candidates.push(path.resolve(__dirname, '..', 'web'));
-    // 2. Legacy / forward-compat: the old `@selvakumaresra/specship-server`
-    //    used to ship the SPA at <pkg>/public/web.
-    try {
-        const pkgJson = require.resolve('@selvakumaresra/specship-server/package.json');
-        candidates.push(path.resolve(path.dirname(pkgJson), 'public', 'web'));
-    }
-    catch { /* not installed as separate package — fall through */ }
-    // 3. Dev monorepo layouts (running from a checkout).
-    candidates.push(path.resolve(__dirname, '..', '..', 'packages', 'server', 'public', 'web'));
-    candidates.push(path.resolve(__dirname, '..', '..', '..', 'packages', 'server', 'public', 'web'));
-    candidates.push(path.resolve(__dirname, '..', '..', 'packages', 'web-ng', 'dist', 'web-ng', 'browser'));
-    candidates.push(path.resolve(__dirname, '..', '..', '..', 'packages', 'web-ng', 'dist', 'web-ng', 'browser'));
-    // 4. Walk up from cwd in case the bin is run inside a checkout.
-    let cur = process.cwd();
-    for (let depth = 0; depth < 6; depth++) {
-        candidates.push(path.join(cur, 'dist', 'web'));
-        candidates.push(path.join(cur, 'packages', 'server', 'public', 'web'));
-        candidates.push(path.join(cur, 'packages', 'web-ng', 'dist', 'web-ng', 'browser'));
-        const parent = path.dirname(cur);
-        if (parent === cur)
-            break;
-        cur = parent;
-    }
-    for (const c of candidates) {
-        try {
-            if (fs.existsSync(path.join(c, 'index.html')))
-                return c;
-        }
-        catch { /* ignore */ }
-    }
-    return null;
-}
-// Dynamic import helper — tsc compiles import() to require() in CJS mode,
-// which fails for ESM-only packages. This bypasses the transformation.
-// eslint-disable-next-line @typescript-eslint/no-implied-eval
-const importESM = new Function('specifier', 'return import(specifier)');
-// Block SpecShip on Node.js 25.x — V8's turboshaft WASM JIT has a Zone
-// allocator bug that reliably crashes when compiling tree-sitter
-// grammars (see #54, #81, #140). The previous behaviour was a soft
-// console.warn that scrolls off-screen before the OOM crash 30 seconds
-// later, leading to a steady stream of "what is this OOM" reports.
-// Hard-exit before any WASM work; allow override via env var for users
-// who patched V8 themselves or want to test a future fix.
-const nodeVersion = process.versions.node;
-const nodeMajor = parseInt(nodeVersion.split('.')[0] ?? '0', 10);
-if (nodeMajor >= 25) {
-    process.stderr.write((0, node_version_check_1.buildNode25BlockBanner)(nodeVersion) + '\n');
-    if (!process.env.SPECSHIP_ALLOW_UNSAFE_NODE) {
-        process.exit(1);
-    }
-    // Override active — banner shown for visibility, continuing.
-}
-// Enforce the supported Node floor. `engines` in package.json only *warns* on
-// install (unless engine-strict), so hard-block here to actually keep users off
-// unsupported versions. Mirrors the 25+ block above. See package.json `engines`.
-if (nodeMajor < node_version_check_1.MIN_NODE_MAJOR) {
-    process.stderr.write((0, node_version_check_1.buildNodeTooOldBanner)(nodeVersion) + '\n');
-    if (!process.env.SPECSHIP_ALLOW_UNSAFE_NODE) {
-        process.exit(1);
-    }
-    // Override active — banner shown for visibility, continuing.
-}
-// Re-exec with V8's `--liftoff-only` if it isn't already set, so tree-sitter's
-// large WASM grammars never hit the turboshaft Zone OOM (`Fatal process out of
-// memory: Zone`) on Node >= 22. No-op under the bundled launcher, which already
-// passes the flag. Must run before any grammar (in the parse worker, which
-// inherits this process's flags) is compiled. See ../extraction/wasm-runtime-flags.
-(0, wasm_runtime_flags_1.relaunchWithWasmRuntimeFlagsIfNeeded)(__filename);
-// Check if running with no arguments - run installer
-if (process.argv.length === 2) {
-    Promise.resolve().then(() => __importStar(require('../installer'))).then(({ runInstaller }) => runInstaller()).catch((err) => {
-        console.error('Installation failed:', err instanceof Error ? err.message : String(err));
-        process.exit(1);
-    });
-}
-else {
-    // Normal CLI flow
-    main();
-}
-process.on('uncaughtException', (error) => {
-    console.error('[SpecShip] Uncaught exception:', error);
-});
-process.on('unhandledRejection', (reason) => {
-    console.error('[SpecShip] Unhandled rejection:', reason);
-});
-function main() {
-    const program = new commander_1.Command();
-    // Version from package.json
-    const packageJson = JSON.parse(fs.readFileSync(path.join(__dirname, '..', '..', 'package.json'), 'utf-8'));
-    // =============================================================================
-    // ANSI Color Helpers (avoid chalk ESM issues)
-    // =============================================================================
-    const colors = {
-        reset: '\x1b[0m',
-        bold: '\x1b[1m',
-        dim: '\x1b[2m',
-        red: '\x1b[31m',
-        green: '\x1b[32m',
-        yellow: '\x1b[33m',
-        blue: '\x1b[34m',
-        cyan: '\x1b[36m',
-        white: '\x1b[37m',
-        gray: '\x1b[90m',
-    };
-    const chalk = {
-        bold: (s) => `${colors.bold}${s}${colors.reset}`,
-        dim: (s) => `${colors.dim}${s}${colors.reset}`,
-        red: (s) => `${colors.red}${s}${colors.reset}`,
-        green: (s) => `${colors.green}${s}${colors.reset}`,
-        yellow: (s) => `${colors.yellow}${s}${colors.reset}`,
-        blue: (s) => `${colors.blue}${s}${colors.reset}`,
-        cyan: (s) => `${colors.cyan}${s}${colors.reset}`,
-        white: (s) => `${colors.white}${s}${colors.reset}`,
-        gray: (s) => `${colors.gray}${s}${colors.reset}`,
-    };
-    program
-        .name('specship')
-        .description('Code intelligence and knowledge graph for any codebase')
-        .version(packageJson.version);
-    // =============================================================================
-    // Helper Functions
-    // =============================================================================
-    /**
-     * Resolve project path from argument or current directory
-     * Walks up parent directories to find nearest initialized SpecShip project
-     * (must have .specship/specship.db, not just .specship/lessons.db)
-     */
-    function resolveProjectPath(pathArg) {
-        const absolutePath = path.resolve(pathArg || process.cwd());
-        // If exact path is initialized (has specship.db), use it
-        if ((0, directory_1.isInitialized)(absolutePath)) {
-            return absolutePath;
-        }
-        // Walk up to find nearest parent with SpecShip initialized
-        // Note: findNearestSpecShipRoot finds any .specship folder, but we need one with specship.db
-        let current = absolutePath;
-        const root = path.parse(current).root;
-        while (current !== root) {
-            const parent = path.dirname(current);
-            if (parent === current)
-                break;
-            current = parent;
-            if ((0, directory_1.isInitialized)(current)) {
-                return current;
-            }
-        }
-        // Not found - return original path (will fail later with helpful error)
-        return absolutePath;
-    }
-    /**
-     * Format a number with commas
-     */
-    function formatNumber(n) {
-        return n.toLocaleString();
-    }
-    /**
-     * Format duration in milliseconds to human readable
-     */
-    function formatDuration(ms) {
-        if (ms < 1000) {
-            return `${ms}ms`;
-        }
-        const seconds = ms / 1000;
-        if (seconds < 60) {
-            return `${seconds.toFixed(1)}s`;
-        }
-        const minutes = Math.floor(seconds / 60);
-        const remainingSeconds = seconds % 60;
-        return `${minutes}m ${remainingSeconds.toFixed(0)}s`;
-    }
-    // Shimmer progress renderer (runs in a worker thread for smooth animation)
-    // Imported at top of file from '../ui/shimmer-progress'
-    /**
-     * Create a plain-text progress callback for --verbose mode.
-     * No animations, no ANSI tricks — just timestamped lines to stdout.
-     */
-    function createVerboseProgress() {
-        let lastPhase = '';
-        let lastPct = -1;
-        const startTime = Date.now();
-        return (progress) => {
-            const elapsed = ((Date.now() - startTime) / 1000).toFixed(1);
-            if (progress.phase !== lastPhase) {
-                lastPhase = progress.phase;
-                lastPct = -1;
-                console.log(`[${elapsed}s] Phase: ${progress.phase}`);
-            }
-            if (progress.total > 0) {
-                const pct = Math.floor((progress.current / progress.total) * 100);
-                // Log every 5% to keep output manageable
-                if (pct >= lastPct + 5 || progress.current === progress.total) {
-                    lastPct = pct;
-                    console.log(`[${elapsed}s]   ${progress.current}/${progress.total} (${pct}%)${progress.currentFile ? ` ${(0, glyphs_1.getGlyphs)().dash} ${progress.currentFile}` : ''}`);
-                }
-            }
-            else if (progress.current > 0) {
-                // Scanning phase (no total yet) — log periodically
-                if (progress.current % 1000 === 0 || progress.current === 1) {
-                    console.log(`[${elapsed}s]   ${formatNumber(progress.current)} files found`);
-                }
-            }
-        };
-    }
-    /**
-     * Print success message
-     */
-    function success(message) {
-        console.log(chalk.green((0, glyphs_1.getGlyphs)().ok) + ' ' + message);
-    }
-    /**
-     * Print error message
-     */
-    function error(message) {
-        console.error(chalk.red((0, glyphs_1.getGlyphs)().err) + ' ' + message);
-    }
-    /**
-     * Print info message
-     */
-    function info(message) {
-        console.log(chalk.blue((0, glyphs_1.getGlyphs)().info) + ' ' + message);
-    }
-    /**
-     * Print warning message
-     */
-    function warn(message) {
-        console.log(chalk.yellow((0, glyphs_1.getGlyphs)().warn) + ' ' + message);
-    }
-    /**
-     * Print indexing results using clack log methods
-     */
-    function printIndexResult(clack, result, projectPath) {
-        const hasErrors = result.filesErrored > 0;
-        // Surface non-file-level failures (e.g. lock-acquisition failure
-        // when another indexer is running) before the file-count branches.
-        // Without this the CLI falls through to "No files found to index",
-        // which is actively misleading — the index DID run, it just couldn't
-        // get the lock.
-        //
-        // If success is false but no severity:'error' entry exists in
-        // `result.errors` (degenerate case — shouldn't happen in practice
-        // but worth guarding because the result shape is plumbed through
-        // multiple call sites), fall back to a generic message rather than
-        // continuing to the misleading "No files found" branch or throwing.
-        if (!result.success && !hasErrors && result.filesIndexed === 0) {
-            const generic = result.errors.find((e) => e.severity === 'error');
-            clack.log.error(generic?.message ?? `Indexing failed ${(0, glyphs_1.getGlyphs)().dash} no further details available`);
-            return;
-        }
-        if (result.filesIndexed > 0) {
-            if (hasErrors) {
-                clack.log.success(`Indexed ${formatNumber(result.filesIndexed)} files (${formatNumber(result.filesErrored)} could not be parsed)`);
-            }
-            else {
-                clack.log.success(`Indexed ${formatNumber(result.filesIndexed)} files`);
-            }
-            clack.log.info(`${formatNumber(result.nodesCreated)} nodes, ${formatNumber(result.edgesCreated)} edges in ${formatDuration(result.durationMs)}`);
-        }
-        else if (hasErrors) {
-            clack.log.error(`Indexing failed ${(0, glyphs_1.getGlyphs)().dash} all ${formatNumber(result.filesErrored)} files had errors`);
-        }
-        else {
-            clack.log.warn('No files found to index');
-        }
-        if (hasErrors) {
-            const errorsByCode = new Map();
-            for (const err of result.errors) {
-                if (err.severity === 'error') {
-                    const code = err.code || 'unknown';
-                    errorsByCode.set(code, (errorsByCode.get(code) || 0) + 1);
-                }
-            }
-            const codeLabels = {
-                parse_error: 'files failed to parse',
-                read_error: 'files could not be read',
-                size_exceeded: 'files exceeded size limit',
-                path_traversal: 'blocked paths',
-                unsupported_language: 'unsupported language',
-                parser_error: 'parser initialization failures',
-            };
-            const breakdown = Array.from(errorsByCode)
-                .map(([code, count]) => `${formatNumber(count)} ${codeLabels[code] || code}`)
-                .join('\n');
-            clack.note(breakdown, 'Error breakdown');
-            if (projectPath) {
-                writeErrorLog(projectPath, result.errors);
-                clack.log.info('See .specship/errors.log for details');
-            }
-            if (result.filesIndexed > 0) {
-                clack.log.info(`The index is fully usable ${(0, glyphs_1.getGlyphs)().dash} only the failed files are missing.`);
-            }
-        }
-        else if (projectPath) {
-            const logPath = path.join(projectPath, '.specship', 'errors.log');
-            if (fs.existsSync(logPath)) {
-                fs.unlinkSync(logPath);
-            }
-        }
-    }
-    /**
-     * Write detailed error log to .specship/errors.log
-     */
-    function writeErrorLog(projectPath, errors) {
-        const cgDir = path.join(projectPath, '.specship');
-        if (!fs.existsSync(cgDir))
-            return;
-        const logPath = path.join(cgDir, 'errors.log');
-        // Group errors by file path
-        const errorsByFile = new Map();
-        const noFileErrors = [];
-        for (const err of errors) {
-            if (err.severity !== 'error')
-                continue;
-            if (err.filePath) {
-                let list = errorsByFile.get(err.filePath);
-                if (!list) {
-                    list = [];
-                    errorsByFile.set(err.filePath, list);
-                }
-                list.push({ message: err.message, code: err.code });
-            }
-            else {
-                noFileErrors.push({ message: err.message, code: err.code });
-            }
-        }
-        const lines = [
-            `SpecShip Error Log - ${new Date().toISOString()}`,
-            `${errorsByFile.size} files with errors`,
-            '',
-        ];
-        for (const [filePath, fileErrors] of errorsByFile) {
-            for (const err of fileErrors) {
-                lines.push(`${filePath}: ${err.message}`);
-            }
-        }
-        for (const err of noFileErrors) {
-            lines.push(err.message);
-        }
-        fs.writeFileSync(logPath, lines.join('\n') + '\n');
-    }
-    // =============================================================================
-    // Commands
-    // =============================================================================
-    /**
-     * specship init [path]
-     */
-    program
-        .command('init [path]')
-        .description('Initialize SpecShip in a project directory and build the initial index')
-        .option('-i, --index', 'Deprecated: indexing now runs by default; flag accepted for backward compatibility')
-        .option('-v, --verbose', 'Show detailed worker lifecycle and memory info')
-        .action(async (pathArg, options) => {
-        const projectPath = path.resolve(pathArg || process.cwd());
-        const clack = await importESM('@clack/prompts');
-        clack.intro('Initializing SpecShip');
-        try {
-            if ((0, directory_1.isInitialized)(projectPath)) {
-                clack.log.warn(`Already initialized in ${projectPath}`);
-                clack.log.info('Use "specship index" to re-index or "specship sync" to update');
-                try {
-                    const { offerWatchFallback } = await Promise.resolve().then(() => __importStar(require('../installer')));
-                    await offerWatchFallback(clack, projectPath);
-                }
-                catch { /* non-fatal */ }
-                clack.outro('');
-                return;
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.init(projectPath, { index: false });
-            clack.log.success(`Initialized in ${projectPath}`);
-            // Indexing runs by default now. The legacy -i/--index flag is still
-            // accepted (so existing muscle memory and scripts don't break) but is a
-            // no-op — initializing always builds the initial index.
-            let result;
-            if (options.verbose) {
-                result = await cg.indexAll({
-                    onProgress: createVerboseProgress(),
-                    verbose: true,
-                });
-            }
-            else {
-                process.stdout.write(`${colors.dim}${(0, glyphs_1.getGlyphs)().rail}${colors.reset}\n`);
-                const progress = (0, shimmer_progress_1.createShimmerProgress)();
-                result = await cg.indexAll({
-                    onProgress: progress.onProgress,
-                });
-                await progress.stop();
-            }
-            printIndexResult(clack, result, projectPath);
-            try {
-                const { offerWatchFallback } = await Promise.resolve().then(() => __importStar(require('../installer')));
-                await offerWatchFallback(clack, projectPath);
-            }
-            catch { /* non-fatal */ }
-            clack.outro('Done');
-            cg.destroy();
-        }
-        catch (err) {
-            clack.log.error(`Failed: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship uninit [path]
-     */
-    program
-        .command('uninit [path]')
-        .description('Remove SpecShip from a project (deletes .specship/ directory)')
-        .option('-f, --force', 'Skip confirmation prompt')
-        .action(async (pathArg, options) => {
-        const projectPath = resolveProjectPath(pathArg);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                warn(`SpecShip is not initialized in ${projectPath}`);
-                return;
-            }
-            if (!options.force) {
-                // Confirm with user
-                const readline = await Promise.resolve().then(() => __importStar(require('readline')));
-                const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
-                const answer = await new Promise((resolve) => {
-                    rl.question(chalk.yellow(`${(0, glyphs_1.getGlyphs)().warn} This will permanently delete all SpecShip data. Continue? (y/N) `), resolve);
-                });
-                rl.close();
-                if (answer.toLowerCase() !== 'y') {
-                    info('Cancelled');
-                    return;
-                }
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = SpecShip.openSync(projectPath);
-            cg.uninitialize();
-            // Clean up any git sync hooks we installed (no-op if none / not a repo).
-            try {
-                const { removeGitSyncHook } = await Promise.resolve().then(() => __importStar(require('../sync/git-hooks')));
-                const removed = removeGitSyncHook(projectPath);
-                if (removed.installed.length > 0) {
-                    info(`Removed git ${removed.installed.join(', ')} sync hook${removed.installed.length > 1 ? 's' : ''}`);
-                }
-            }
-            catch { /* non-fatal */ }
-            success(`Removed SpecShip from ${projectPath}`);
-        }
-        catch (err) {
-            error(`Failed to uninitialize: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship index [path]
-     */
-    program
-        .command('index [path]')
-        .description('Index all files in the project')
-        .option('-f, --force', 'Force full re-index even if already indexed')
-        .option('-q, --quiet', 'Suppress progress output')
-        .option('-v, --verbose', 'Show detailed worker lifecycle and memory info')
-        .action(async (pathArg, options) => {
-        const projectPath = resolveProjectPath(pathArg);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                info('Run "specship init" first');
-                process.exit(1);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            if (options.quiet) {
-                // Quiet mode: no UI, just run
-                if (options.force)
-                    cg.clear();
-                const result = await cg.indexAll();
-                if (!result.success)
-                    process.exit(1);
-                cg.destroy();
-                return;
-            }
-            const clack = await importESM('@clack/prompts');
-            clack.intro('Indexing project');
-            if (options.force) {
-                cg.clear();
-                clack.log.info('Cleared existing index');
-            }
-            let result;
-            if (options.verbose) {
-                result = await cg.indexAll({
-                    onProgress: createVerboseProgress(),
-                    verbose: true,
-                });
-            }
-            else {
-                process.stdout.write(`${colors.dim}${(0, glyphs_1.getGlyphs)().rail}${colors.reset}\n`);
-                const progress = (0, shimmer_progress_1.createShimmerProgress)();
-                result = await cg.indexAll({
-                    onProgress: progress.onProgress,
-                });
-                await progress.stop();
-            }
-            printIndexResult(clack, result, projectPath);
-            if (!result.success) {
-                process.exit(1);
-            }
-            clack.outro('Done');
-            cg.destroy();
-        }
-        catch (err) {
-            error(`Failed to index: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship sync [path]
-     */
-    program
-        .command('sync [path]')
-        .description('Sync changes since last index')
-        .option('-q, --quiet', 'Suppress output (for git hooks)')
-        .action(async (pathArg, options) => {
-        const projectPath = resolveProjectPath(pathArg);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                if (!options.quiet) {
-                    error(`SpecShip not initialized in ${projectPath}`);
-                }
-                process.exit(1);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            if (options.quiet) {
-                await cg.sync();
-                cg.destroy();
-                return;
-            }
-            const clack = await importESM('@clack/prompts');
-            clack.intro('Syncing SpecShip');
-            process.stdout.write(`${colors.dim}${(0, glyphs_1.getGlyphs)().rail}${colors.reset}\n`);
-            const progress = (0, shimmer_progress_1.createShimmerProgress)();
-            const result = await cg.sync({
-                onProgress: progress.onProgress,
-            });
-            await progress.stop();
-            const totalChanges = result.filesAdded + result.filesModified + result.filesRemoved;
-            if (totalChanges === 0) {
-                clack.log.info('Already up to date');
-            }
-            else {
-                clack.log.success(`Synced ${formatNumber(totalChanges)} changed files`);
-                const details = [];
-                if (result.filesAdded > 0)
-                    details.push(`Added: ${result.filesAdded}`);
-                if (result.filesModified > 0)
-                    details.push(`Modified: ${result.filesModified}`);
-                if (result.filesRemoved > 0)
-                    details.push(`Removed: ${result.filesRemoved}`);
-                clack.log.info(`${details.join(', ')} ${(0, glyphs_1.getGlyphs)().dash} ${formatNumber(result.nodesUpdated)} nodes in ${formatDuration(result.durationMs)}`);
-            }
-            clack.outro('Done');
-            cg.destroy();
-        }
-        catch (err) {
-            if (!options.quiet) {
-                error(`Failed to sync: ${err instanceof Error ? err.message : String(err)}`);
-            }
-            process.exit(1);
-        }
-    });
-    /**
-     * specship status [path]
-     */
-    program
-        .command('status [path]')
-        .description('Show index status and statistics')
-        .option('-j, --json', 'Output as JSON')
-        .action(async (pathArg, options) => {
-        const projectPath = resolveProjectPath(pathArg);
-        // The directory the user actually ran from, before walking up to the index
-        // root. Used to detect when the resolved index lives in a different git
-        // working tree (e.g. a nested worktree borrowing the main checkout's index).
-        const startPath = path.resolve(pathArg || process.cwd());
-        const worktreeMismatch = (0, worktree_1.detectWorktreeIndexMismatch)(startPath, projectPath);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                if (options.json) {
-                    console.log(JSON.stringify({
-                        initialized: false,
-                        version: packageJson.version,
-                        projectPath,
-                        indexPath: (0, directory_1.getSpecShipDir)(projectPath),
-                        lastIndexed: null,
-                    }));
-                    return;
-                }
-                console.log(chalk.bold('\nSpecShip Status\n'));
-                info(`Project: ${projectPath}`);
-                warn('Not initialized');
-                info('Run "specship init" to initialize');
-                return;
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            const stats = cg.getStats();
-            const changes = cg.getChangedFiles();
-            const backend = cg.getBackend();
-            const journalMode = cg.getJournalMode();
-            // JSON output mode
-            if (options.json) {
-                const lastIndexedMs = cg.getLastIndexedAt();
-                console.log(JSON.stringify({
-                    initialized: true,
-                    version: packageJson.version,
-                    projectPath,
-                    indexPath: (0, directory_1.getSpecShipDir)(projectPath),
-                    lastIndexed: lastIndexedMs != null ? new Date(lastIndexedMs).toISOString() : null,
-                    fileCount: stats.fileCount,
-                    nodeCount: stats.nodeCount,
-                    edgeCount: stats.edgeCount,
-                    dbSizeBytes: stats.dbSizeBytes,
-                    backend,
-                    journalMode,
-                    nodesByKind: stats.nodesByKind,
-                    languages: Object.entries(stats.filesByLanguage).filter(([, count]) => count > 0).map(([lang]) => lang),
-                    pendingChanges: {
-                        added: changes.added.length,
-                        modified: changes.modified.length,
-                        removed: changes.removed.length,
-                    },
-                    worktreeMismatch: worktreeMismatch
-                        ? { worktreeRoot: worktreeMismatch.worktreeRoot, indexRoot: worktreeMismatch.indexRoot }
-                        : null,
-                }));
-                cg.destroy();
-                return;
-            }
-            console.log(chalk.bold('\nSpecShip Status\n'));
-            // Project info
-            console.log(chalk.cyan('Project:'), projectPath);
-            if (worktreeMismatch) {
-                warn((0, worktree_1.worktreeMismatchWarning)(worktreeMismatch));
-            }
-            console.log();
-            // Index stats
-            console.log(chalk.bold('Index Statistics:'));
-            console.log(`  Files:     ${formatNumber(stats.fileCount)}`);
-            console.log(`  Nodes:     ${formatNumber(stats.nodeCount)}`);
-            console.log(`  Edges:     ${formatNumber(stats.edgeCount)}`);
-            console.log(`  DB Size:   ${(stats.dbSizeBytes / 1024 / 1024).toFixed(2)} MB`);
-            // Surface the active SQLite backend. Two paths:
-            //   - 'node-sqlite'    → Node's built-in module (production: bundled Node 24 has FTS5).
-            //   - 'better-sqlite3' → optional devDep that ships its own SQLite with FTS5.
-            const backendLabel = backend === 'better-sqlite3'
-                ? chalk.green(`better-sqlite3 ${(0, glyphs_1.getGlyphs)().dash} ships its own SQLite (FTS5)`)
-                : chalk.green(`node:sqlite ${(0, glyphs_1.getGlyphs)().dash} built-in (full WAL)`);
-            console.log(`  Backend:   ${backendLabel}`);
-            // Effective journal mode: 'wal' means concurrent reads never block on a
-            // writer; anything else means they can ("database is locked"). node:sqlite
-            // supports WAL everywhere, so a non-wal mode means the filesystem can't
-            // (network mounts, WSL2 /mnt). See issue #238.
-            const journalLabel = journalMode === 'wal'
-                ? chalk.green('wal')
-                : chalk.yellow(`${journalMode || 'unknown'} ${(0, glyphs_1.getGlyphs)().dash} WAL inactive; reads can block on writes`);
-            console.log(`  Journal:   ${journalLabel}`);
-            console.log();
-            // Node breakdown
-            console.log(chalk.bold('Nodes by Kind:'));
-            const nodesByKind = Object.entries(stats.nodesByKind)
-                .filter(([, count]) => count > 0)
-                .sort((a, b) => b[1] - a[1]);
-            for (const [kind, count] of nodesByKind) {
-                console.log(`  ${kind.padEnd(15)} ${formatNumber(count)}`);
-            }
-            console.log();
-            // Language breakdown
-            console.log(chalk.bold('Files by Language:'));
-            const filesByLang = Object.entries(stats.filesByLanguage)
-                .filter(([, count]) => count > 0)
-                .sort((a, b) => b[1] - a[1]);
-            for (const [lang, count] of filesByLang) {
-                console.log(`  ${lang.padEnd(15)} ${formatNumber(count)}`);
-            }
-            console.log();
-            // Pending changes
-            const totalChanges = changes.added.length + changes.modified.length + changes.removed.length;
-            if (totalChanges > 0) {
-                console.log(chalk.bold('Pending Changes:'));
-                if (changes.added.length > 0) {
-                    console.log(`  Added:     ${changes.added.length} files`);
-                }
-                if (changes.modified.length > 0) {
-                    console.log(`  Modified:  ${changes.modified.length} files`);
-                }
-                if (changes.removed.length > 0) {
-                    console.log(`  Removed:   ${changes.removed.length} files`);
-                }
-                info('Run "specship sync" to update the index');
-            }
-            else {
-                success('Index is up to date');
-            }
-            console.log();
-            cg.destroy();
-        }
-        catch (err) {
-            error(`Failed to get status: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship query <search>
-     */
-    program
-        .command('query <search>')
-        .description('Search for symbols in the codebase')
-        .option('-p, --path <path>', 'Project path')
-        .option('-l, --limit <number>', 'Maximum results', '10')
-        .option('-k, --kind <kind>', 'Filter by node kind (function, class, etc.)')
-        .option('-j, --json', 'Output as JSON')
-        .action(async (search, options) => {
-        const projectPath = resolveProjectPath(options.path);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                process.exit(1);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            const limit = parseInt(options.limit || '10', 10);
-            const rawResults = cg.searchNodes(search, {
-                limit,
-                kinds: options.kind ? [options.kind] : undefined,
-            });
-            // Mirror the MCP search down-rank so the CLI also surfaces the
-            // hand-written implementation before protobuf/gRPC scaffolding
-            // when both share a name. See extraction/generated-detection.ts.
-            const { isGeneratedFile } = await Promise.resolve().then(() => __importStar(require('../extraction/generated-detection')));
-            const results = [...rawResults].sort((a, b) => {
-                const aGen = isGeneratedFile(a.node.filePath) ? 1 : 0;
-                const bGen = isGeneratedFile(b.node.filePath) ? 1 : 0;
-                return aGen - bGen;
-            });
-            if (options.json) {
-                console.log(JSON.stringify(results, null, 2));
-            }
-            else {
-                if (results.length === 0) {
-                    info(`No results found for "${search}"`);
-                }
-                else {
-                    console.log(chalk.bold(`\nSearch Results for "${search}":\n`));
-                    for (const result of results) {
-                        const node = result.node;
-                        const location = `${node.filePath}:${node.startLine}`;
-                        const score = chalk.dim(`(${(result.score * 100).toFixed(0)}%)`);
-                        console.log(chalk.cyan(node.kind.padEnd(12)) +
-                            chalk.white(node.name) +
-                            ' ' + score);
-                        console.log(chalk.dim(`  ${location}`));
-                        if (node.signature) {
-                            console.log(chalk.dim(`  ${node.signature}`));
-                        }
-                        console.log();
-                    }
-                }
-            }
-            cg.destroy();
-        }
-        catch (err) {
-            error(`Search failed: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship files [path]
-     */
-    program
-        .command('files')
-        .description('Show project file structure from the index')
-        .option('-p, --path <path>', 'Project path')
-        .option('--filter <dir>', 'Filter to files under this directory')
-        .option('--pattern <glob>', 'Filter files matching this glob pattern')
-        .option('--format <format>', 'Output format (tree, flat, grouped)', 'tree')
-        .option('--max-depth <number>', 'Maximum directory depth for tree format')
-        .option('--no-metadata', 'Hide file metadata (language, symbol count)')
-        .option('-j, --json', 'Output as JSON')
-        .action(async (options) => {
-        const projectPath = resolveProjectPath(options.path);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                process.exit(1);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            let files = cg.getFiles();
-            if (files.length === 0) {
-                info('No files indexed. Run "specship index" first.');
-                cg.destroy();
-                return;
-            }
-            // Filter by path prefix
-            if (options.filter) {
-                const filter = options.filter;
-                files = files.filter(f => f.path.startsWith(filter) || f.path.startsWith('./' + filter));
-            }
-            // Filter by glob pattern
-            if (options.pattern) {
-                const regex = globToRegex(options.pattern);
-                files = files.filter(f => regex.test(f.path));
-            }
-            if (files.length === 0) {
-                info('No files found matching the criteria.');
-                cg.destroy();
-                return;
-            }
-            // JSON output
-            if (options.json) {
-                const output = files.map(f => ({
-                    path: f.path,
-                    language: f.language,
-                    nodeCount: f.nodeCount,
-                    size: f.size,
-                }));
-                console.log(JSON.stringify(output, null, 2));
-                cg.destroy();
-                return;
-            }
-            const includeMetadata = options.metadata !== false;
-            const format = options.format || 'tree';
-            const maxDepth = options.maxDepth ? parseInt(options.maxDepth, 10) : undefined;
-            // Format output
-            switch (format) {
-                case 'flat':
-                    console.log(chalk.bold(`\nFiles (${files.length}):\n`));
-                    for (const file of files.sort((a, b) => a.path.localeCompare(b.path))) {
-                        if (includeMetadata) {
-                            console.log(`  ${file.path} ${chalk.dim(`(${file.language}, ${file.nodeCount} symbols)`)}`);
-                        }
-                        else {
-                            console.log(`  ${file.path}`);
-                        }
-                    }
-                    break;
-                case 'grouped':
-                    console.log(chalk.bold(`\nFiles by Language (${files.length} total):\n`));
-                    const byLang = new Map();
-                    for (const file of files) {
-                        const existing = byLang.get(file.language) || [];
-                        existing.push(file);
-                        byLang.set(file.language, existing);
-                    }
-                    const sortedLangs = [...byLang.entries()].sort((a, b) => b[1].length - a[1].length);
-                    for (const [lang, langFiles] of sortedLangs) {
-                        console.log(chalk.cyan(`${lang} (${langFiles.length}):`));
-                        for (const file of langFiles.sort((a, b) => a.path.localeCompare(b.path))) {
-                            if (includeMetadata) {
-                                console.log(`  ${file.path} ${chalk.dim(`(${file.nodeCount} symbols)`)}`);
-                            }
-                            else {
-                                console.log(`  ${file.path}`);
-                            }
-                        }
-                        console.log();
-                    }
-                    break;
-                case 'tree':
-                default:
-                    console.log(chalk.bold(`\nProject Structure (${files.length} files):\n`));
-                    printFileTree(files, includeMetadata, maxDepth, chalk);
-                    break;
-            }
-            console.log();
-            cg.destroy();
-        }
-        catch (err) {
-            error(`Failed to list files: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * Convert glob pattern to regex
-     */
-    function globToRegex(pattern) {
-        const escaped = pattern
-            .replace(/[.+^${}()|[\]\\]/g, '\\$&')
-            .replace(/\*\*/g, '{{GLOBSTAR}}')
-            .replace(/\*/g, '[^/]*')
-            .replace(/\?/g, '[^/]')
-            .replace(/\{\{GLOBSTAR\}\}/g, '.*');
-        return new RegExp(escaped);
-    }
-    /**
-     * Print files as a tree
-     */
-    function printFileTree(files, includeMetadata, maxDepth, chalk) {
-        const root = { name: '', children: new Map() };
-        for (const file of files) {
-            const parts = file.path.split('/');
-            let current = root;
-            for (let i = 0; i < parts.length; i++) {
-                const part = parts[i];
-                if (!part)
-                    continue;
-                if (!current.children.has(part)) {
-                    current.children.set(part, { name: part, children: new Map() });
-                }
-                current = current.children.get(part);
-                if (i === parts.length - 1) {
-                    current.file = { language: file.language, nodeCount: file.nodeCount };
-                }
-            }
-        }
-        const renderNode = (node, prefix, isLast, depth) => {
-            if (maxDepth !== undefined && depth > maxDepth)
-                return;
-            const glyphs = (0, glyphs_1.getGlyphs)();
-            const connector = isLast ? glyphs.treeLast : glyphs.treeBranch;
-            const childPrefix = isLast ? '    ' : glyphs.treePipe;
-            if (node.name) {
-                let line = prefix + connector + node.name;
-                if (node.file && includeMetadata) {
-                    line += chalk.dim(` (${node.file.language}, ${node.file.nodeCount} symbols)`);
-                }
-                console.log(line);
-            }
-            const children = [...node.children.values()];
-            children.sort((a, b) => {
-                const aIsDir = a.children.size > 0 && !a.file;
-                const bIsDir = b.children.size > 0 && !b.file;
-                if (aIsDir !== bIsDir)
-                    return aIsDir ? -1 : 1;
-                return a.name.localeCompare(b.name);
-            });
-            for (let i = 0; i < children.length; i++) {
-                const child = children[i];
-                const nextPrefix = node.name ? prefix + childPrefix : prefix;
-                renderNode(child, nextPrefix, i === children.length - 1, depth + 1);
-            }
-        };
-        renderNode(root, '', true, 0);
-    }
-    /**
-     * specship serve
-     */
-    program
-        .command('serve')
-        .description('Start SpecShip as an MCP server for AI assistants, an HTTP API for the desktop UI, or both')
-        .option('-p, --path <path>', 'Project path (optional for MCP mode, uses rootUri from client)')
-        .option('--mcp', 'Run as MCP server (stdio transport)')
-        .option('--ui', 'Run as HTTP API server for the SpecShip Desktop UI (binds 127.0.0.1)')
-        .option('--port <n>', 'HTTP port when --ui is set (default 4242)')
-        .option('--host <h>', 'HTTP bind host when --ui is set (default 127.0.0.1)')
-        .option('--ingest', 'Enable Claude Code JSONL transcript watcher (only when --ui is set)')
-        .option('--web-dir <path>', 'Path to a built Angular UI (index.html lives here); auto-detected by default')
-        .option('--no-web', 'Run --ui headless (API only, no SPA)')
-        .option('--no-watch', 'Disable the file watcher (no auto-sync; useful on slow filesystems like WSL2 /mnt drives)')
-        .action(async (options) => {
-        const projectPath = options.path ? resolveProjectPath(options.path) : undefined;
-        // Commander sets watch=false when --no-watch is passed. Route it through
-        // the same env-var chokepoint the watcher and MCP server already honor.
-        if (options.watch === false) {
-            process.env.SPECSHIP_NO_WATCH = '1';
-        }
-        try {
-            if (options.ui) {
-                // HTTP API mode. Boots the specship server + optional JSONL
-                // ingest watcher. Optionally also starts MCP stdio in parallel.
-                //
-                // Project root resolution:
-                //   1. `-p <path>` if passed.
-                //   2. The current cwd if it has been `specship init`-ed.
-                //   3. Most-recently-touched initialized project under
-                //      ~/.claude/projects/ — so a user who runs `specship serve --ui`
-                //      from anywhere lands on the project they were last active in.
-                //   4. None — server boots projectless, the desktop picker prompts
-                //      the user to choose one (analytics endpoints return 409 until
-                //      a primary exists).
-                let root = null;
-                if (projectPath) {
-                    root = projectPath;
-                    if (!(0, directory_1.isInitialized)(root)) {
-                        error(`SpecShip not initialized in ${root}. Run \`specship init -i\` first.`);
-                        process.exit(1);
-                    }
-                }
-                else if ((0, directory_1.isInitialized)(process.cwd())) {
-                    root = process.cwd();
-                }
-                else {
-                    root = await pickRecentInitializedProject();
-                }
-                const port = options.port ? parseInt(options.port, 10) : 4242;
-                const host = options.host ?? '127.0.0.1';
-                // Lazy-load the server package via dist path. The npm bin is
-                // packaged with the server already built under
-                // node_modules/@selvakumaresra/specship-server, OR (dev) the
-                // sibling packages/server/dist directory.
-                const { createServer } = await loadServerPackage();
-                // Locate the built Angular UI so the same port serves the SPA at /.
-                // `--no-web` opts out (Commander sets web=false then). Otherwise we
-                // try the explicit --web-dir, then auto-detect.
-                const webDir = options.web === false ? null : locateWebDir(options.webDir ?? null);
-                // The JSONL ingest watcher now starts in-process inside createServer
-                // when `ingest: true`. The server owns its lifecycle; CLI just toggles.
-                const handle = await createServer({
-                    projectRoot: root ?? undefined,
-                    host,
-                    port,
-                    ingest: options.ingest !== false,
-                    webDir,
-                    verbose: false,
-                });
-                console.error(chalk.bold('\nSpecShip Desktop server\n'));
-                console.error(chalk.green((0, glyphs_1.getGlyphs)().ok) + ` HTTP API: ${handle.url}`);
-                if (root) {
-                    console.error(chalk.dim(`  project: ${root}`));
-                }
-                else {
-                    console.error(chalk.yellow((0, glyphs_1.getGlyphs)().warn) + ' no primary project — pick one in the desktop UI');
-                    console.error(chalk.dim('  analytics endpoints will return 409 until one is selected'));
-                }
-                if (webDir) {
-                    console.error(chalk.green((0, glyphs_1.getGlyphs)().ok) + ` SPA:      ${handle.url}/  (from ${webDir})`);
-                }
-                else if (options.web !== false) {
-                    console.error(chalk.yellow((0, glyphs_1.getGlyphs)().warn) + ' UI not found — running API-only.');
-                    console.error(chalk.dim('  Build it first: cd packages/server && npm run build:all'));
-                }
-                if (options.ingest !== false) {
-                    console.error(chalk.dim('  Claude Code transcript ingest watcher active'));
-                }
-                if (options.mcp) {
-                    if (!root) {
-                        console.error(chalk.yellow((0, glyphs_1.getGlyphs)().warn) + ' --mcp needs an initialized project — skipping MCP stdio');
-                    }
-                    else {
-                        // Also start MCP stdio in this process. The two are unrelated
-                        // surfaces hitting the same specship instance, both safe under WAL.
-                        const { MCPServer } = await Promise.resolve().then(() => __importStar(require('../mcp/index')));
-                        const mcp = new MCPServer(root);
-                        void mcp.start();
-                        console.error(chalk.green((0, glyphs_1.getGlyphs)().ok) + ' MCP stdio: running');
-                    }
-                }
-                const shutdown = async () => {
-                    console.error(chalk.dim('shutting down…'));
-                    await handle.stop();
-                    process.exit(0);
-                };
-                process.on('SIGINT', () => { void shutdown(); });
-                process.on('SIGTERM', () => { void shutdown(); });
-                // Server now runs until terminated.
-                return;
-            }
-            if (options.mcp) {
-                // Start MCP server - it handles initialization lazily based on rootUri from client
-                const { MCPServer } = await Promise.resolve().then(() => __importStar(require('../mcp/index')));
-                const server = new MCPServer(projectPath);
-                await server.start();
-                // Server will run until terminated
-            }
-            else {
-                // Default: show info about MCP mode.
-                // Use stderr so stdout stays clean for any piped/stdio usage.
-                console.error(chalk.bold('\nSpecShip MCP Server\n'));
-                console.error(chalk.blue((0, glyphs_1.getGlyphs)().info) + ' Use --mcp flag to start the MCP server');
-                console.error('\nTo use with Claude Code, add to your MCP configuration:');
-                console.error(chalk.dim(`
-{
-  "mcpServers": {
-    "specship": {
-      "command": "specship",
-      "args": ["serve", "--mcp"]
-    }
-  }
-}
-`));
-                console.error('Available tools:');
-                console.error(chalk.cyan('  specship_explore') + '   - Primary: source of the relevant symbols for any question');
-                console.error(chalk.cyan('  specship_search') + '    - Search for code symbols');
-                console.error(chalk.cyan('  specship_callers') + '   - Find callers of a symbol');
-                console.error(chalk.cyan('  specship_callees') + '   - Find what a symbol calls');
-                console.error(chalk.cyan('  specship_impact') + '    - Analyze impact of changes');
-                console.error(chalk.cyan('  specship_node') + '      - Get symbol details');
-                console.error(chalk.cyan('  specship_files') + '     - Get project file structure');
-                console.error(chalk.cyan('  specship_status') + '    - Get index status');
-            }
-        }
-        catch (err) {
-            error(`Failed to start server: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship unlock [path]
-     */
-    program
-        .command('unlock [path]')
-        .description('Remove a stale lock file that is blocking indexing')
-        .action(async (pathArg) => {
-        const projectPath = resolveProjectPath(pathArg);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                return;
-            }
-            const lockPath = path.join((0, directory_1.getSpecShipDir)(projectPath), 'specship.lock');
-            if (!fs.existsSync(lockPath)) {
-                info(`No lock file found ${(0, glyphs_1.getGlyphs)().dash} nothing to do`);
-                return;
-            }
-            fs.unlinkSync(lockPath);
-            success('Removed lock file. You can now run indexing again.');
-        }
-        catch (err) {
-            error(`Failed to remove lock: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship callers <symbol>
-     *
-     * CLI parity with the MCP graph tools (specship_callers/callees/impact) so the
-     * traversal queries work in scripts, CI, and git hooks without a running MCP
-     * server.
-     */
-    program
-        .command('callers <symbol>')
-        .description('Find all functions/methods that call a specific symbol')
-        .option('-p, --path <path>', 'Project path')
-        .option('-l, --limit <number>', 'Maximum results', '20')
-        .option('-j, --json', 'Output as JSON')
-        .action(async (symbol, options) => {
-        const projectPath = resolveProjectPath(options.path);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                process.exit(1);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            const limit = parseInt(options.limit || '20', 10);
-            const matches = cg.searchNodes(symbol, { limit: 50 });
-            if (matches.length === 0) {
-                info(`Symbol "${symbol}" not found`);
-                cg.destroy();
-                return;
-            }
-            const seen = new Set();
-            const allCallers = [];
-            for (const match of matches) {
-                const exactMatch = match.node.name === symbol || match.node.name.endsWith(`.${symbol}`) || match.node.name.endsWith(`::${symbol}`);
-                if (!exactMatch && matches.length > 1)
-                    continue;
-                for (const c of cg.getCallers(match.node.id)) {
-                    if (!seen.has(c.node.id)) {
-                        seen.add(c.node.id);
-                        allCallers.push({ name: c.node.name, kind: c.node.kind, filePath: c.node.filePath, startLine: c.node.startLine });
-                    }
-                }
-            }
-            // Fallback: if exact filter removed everything, use the top match
-            if (allCallers.length === 0 && matches[0]) {
-                for (const c of cg.getCallers(matches[0].node.id)) {
-                    if (!seen.has(c.node.id)) {
-                        seen.add(c.node.id);
-                        allCallers.push({ name: c.node.name, kind: c.node.kind, filePath: c.node.filePath, startLine: c.node.startLine });
-                    }
-                }
-            }
-            const limited = allCallers.slice(0, limit);
-            if (options.json) {
-                console.log(JSON.stringify({ symbol, callers: limited }, null, 2));
-            }
-            else if (limited.length === 0) {
-                info(`No callers found for "${symbol}"`);
-            }
-            else {
-                console.log(chalk.bold(`\nCallers of "${symbol}" (${limited.length}):\n`));
-                for (const node of limited) {
-                    const loc = node.startLine ? `:${node.startLine}` : '';
-                    console.log(chalk.cyan(node.kind.padEnd(12)) +
-                        chalk.white(node.name));
-                    console.log(chalk.dim(`  ${node.filePath}${loc}`));
-                    console.log();
-                }
-            }
-            cg.destroy();
-        }
-        catch (err) {
-            error(`callers failed: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship callees <symbol>
-     */
-    program
-        .command('callees <symbol>')
-        .description('Find all functions/methods that a specific symbol calls')
-        .option('-p, --path <path>', 'Project path')
-        .option('-l, --limit <number>', 'Maximum results', '20')
-        .option('-j, --json', 'Output as JSON')
-        .action(async (symbol, options) => {
-        const projectPath = resolveProjectPath(options.path);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                process.exit(1);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            const limit = parseInt(options.limit || '20', 10);
-            const matches = cg.searchNodes(symbol, { limit: 50 });
-            if (matches.length === 0) {
-                info(`Symbol "${symbol}" not found`);
-                cg.destroy();
-                return;
-            }
-            const seen = new Set();
-            const allCallees = [];
-            for (const match of matches) {
-                const exactMatch = match.node.name === symbol || match.node.name.endsWith(`.${symbol}`) || match.node.name.endsWith(`::${symbol}`);
-                if (!exactMatch && matches.length > 1)
-                    continue;
-                for (const c of cg.getCallees(match.node.id)) {
-                    if (!seen.has(c.node.id)) {
-                        seen.add(c.node.id);
-                        allCallees.push({ name: c.node.name, kind: c.node.kind, filePath: c.node.filePath, startLine: c.node.startLine });
-                    }
-                }
-            }
-            if (allCallees.length === 0 && matches[0]) {
-                for (const c of cg.getCallees(matches[0].node.id)) {
-                    if (!seen.has(c.node.id)) {
-                        seen.add(c.node.id);
-                        allCallees.push({ name: c.node.name, kind: c.node.kind, filePath: c.node.filePath, startLine: c.node.startLine });
-                    }
-                }
-            }
-            const limited = allCallees.slice(0, limit);
-            if (options.json) {
-                console.log(JSON.stringify({ symbol, callees: limited }, null, 2));
-            }
-            else if (limited.length === 0) {
-                info(`No callees found for "${symbol}"`);
-            }
-            else {
-                console.log(chalk.bold(`\nCallees of "${symbol}" (${limited.length}):\n`));
-                for (const node of limited) {
-                    const loc = node.startLine ? `:${node.startLine}` : '';
-                    console.log(chalk.cyan(node.kind.padEnd(12)) +
-                        chalk.white(node.name));
-                    console.log(chalk.dim(`  ${node.filePath}${loc}`));
-                    console.log();
-                }
-            }
-            cg.destroy();
-        }
-        catch (err) {
-            error(`callees failed: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship impact <symbol>
-     */
-    program
-        .command('impact <symbol>')
-        .description('Analyze what code is affected by changing a symbol')
-        .option('-p, --path <path>', 'Project path')
-        .option('-d, --depth <number>', 'Traversal depth', '2')
-        .option('-j, --json', 'Output as JSON')
-        .action(async (symbol, options) => {
-        const projectPath = resolveProjectPath(options.path);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                process.exit(1);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            const depth = Math.min(Math.max(parseInt(options.depth || '2', 10), 1), 10);
-            const matches = cg.searchNodes(symbol, { limit: 50 });
-            if (matches.length === 0) {
-                info(`Symbol "${symbol}" not found`);
-                cg.destroy();
-                return;
-            }
-            // Merge impact subgraphs across all exact-matching symbols
-            const mergedNodes = new Map();
-            const seenEdges = new Set();
-            let edgeCount = 0;
-            for (const match of matches) {
-                const exactMatch = match.node.name === symbol || match.node.name.endsWith(`.${symbol}`) || match.node.name.endsWith(`::${symbol}`);
-                if (!exactMatch && matches.length > 1)
-                    continue;
-                const impact = cg.getImpactRadius(match.node.id, depth);
-                for (const [id, n] of impact.nodes) {
-                    mergedNodes.set(id, { name: n.name, kind: n.kind, filePath: n.filePath, startLine: n.startLine });
-                }
-                for (const e of impact.edges) {
-                    const key = `${e.source}->${e.target}:${e.kind}`;
-                    if (!seenEdges.has(key)) {
-                        seenEdges.add(key);
-                        edgeCount++;
-                    }
-                }
-            }
-            // Fallback to top match if exact filter removed everything
-            if (mergedNodes.size === 0 && matches[0]) {
-                const impact = cg.getImpactRadius(matches[0].node.id, depth);
-                for (const [id, n] of impact.nodes) {
-                    mergedNodes.set(id, { name: n.name, kind: n.kind, filePath: n.filePath, startLine: n.startLine });
-                }
-                edgeCount = impact.edges.length;
-            }
-            if (options.json) {
-                console.log(JSON.stringify({
-                    symbol,
-                    depth,
-                    nodeCount: mergedNodes.size,
-                    edgeCount,
-                    affected: Array.from(mergedNodes.values()),
-                }, null, 2));
-            }
-            else if (mergedNodes.size === 0) {
-                info(`No affected symbols found for "${symbol}"`);
-            }
-            else {
-                console.log(chalk.bold(`\nImpact of changing "${symbol}" — ${mergedNodes.size} affected symbols:\n`));
-                // Group by file
-                const byFile = new Map();
-                for (const node of mergedNodes.values()) {
-                    const list = byFile.get(node.filePath) || [];
-                    list.push({ name: node.name, kind: node.kind, startLine: node.startLine });
-                    byFile.set(node.filePath, list);
-                }
-                for (const [file, nodes] of byFile) {
-                    console.log(chalk.cyan(file));
-                    for (const node of nodes) {
-                        const loc = node.startLine ? `:${node.startLine}` : '';
-                        console.log(`  ${chalk.dim(node.kind.padEnd(12))}${node.name}${chalk.dim(loc)}`);
-                    }
-                    console.log();
-                }
-            }
-            cg.destroy();
-        }
-        catch (err) {
-            error(`impact failed: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship affected [files...]
-     *
-     * Find test files affected by the given source files.
-     * Traces dependency edges transitively to find test files that depend on changed code.
-     *
-     * Usage:
-     *   git diff --name-only | specship affected --stdin
-     *   specship affected src/lib/components/Editor.svelte src/routes/+page.svelte
-     */
-    program
-        .command('affected [files...]')
-        .description('Find test files affected by changed source files')
-        .option('-p, --path <path>', 'Project path')
-        .option('--stdin', 'Read file list from stdin (one per line)')
-        .option('-d, --depth <number>', 'Max dependency traversal depth', '5')
-        .option('-f, --filter <glob>', 'Custom glob filter for test files (e.g. "e2e/*.spec.ts")')
-        .option('-j, --json', 'Output as JSON')
-        .option('-q, --quiet', 'Only output file paths, no decoration')
-        .action(async (fileArgs, options) => {
-        const projectPath = resolveProjectPath(options.path);
-        try {
-            if (!(0, directory_1.isInitialized)(projectPath)) {
-                error(`SpecShip not initialized in ${projectPath}`);
-                process.exit(1);
-            }
-            // Collect changed files from args or stdin
-            let changedFiles = [...(fileArgs || [])];
-            if (options.stdin) {
-                const stdinData = fs.readFileSync(0, 'utf-8');
-                const stdinFiles = stdinData.split('\n').map(f => f.trim()).filter(Boolean);
-                changedFiles.push(...stdinFiles);
-            }
-            if (changedFiles.length === 0) {
-                if (!options.quiet)
-                    info('No files provided. Use file arguments or --stdin.');
-                process.exit(0);
-            }
-            const { default: SpecShip } = await loadSpecShip();
-            const cg = await SpecShip.open(projectPath);
-            const maxDepth = parseInt(options.depth || '5', 10);
-            // Common test file patterns
-            const defaultTestPatterns = [
-                /\.spec\./,
-                /\.test\./,
-                /\/__tests__\//,
-                /\/tests?\//,
-                /\/e2e\//,
-                /\/spec\//,
-            ];
-            // Custom filter pattern
-            let customFilter = null;
-            if (options.filter) {
-                // Convert glob to regex: ** → .+, * → [^/]*, . → \.
-                const regex = options.filter
-                    .replace(/[+[\]{}()^$|\\]/g, '\\$&')
-                    .replace(/\./g, '\\.')
-                    .replace(/\*\*/g, '.+')
-                    .replace(/\*/g, '[^/]*');
-                customFilter = new RegExp(regex);
-            }
-            function isTestFile(filePath) {
-                if (customFilter)
-                    return customFilter.test(filePath);
-                return defaultTestPatterns.some(p => p.test(filePath));
-            }
-            // BFS to find all transitive dependents of changed files, filtered to test files
-            const affectedTests = new Set();
-            const allDependents = new Set();
-            for (const file of changedFiles) {
-                // If the changed file is itself a test file, include it
-                if (isTestFile(file)) {
-                    affectedTests.add(file);
-                    continue;
-                }
-                // BFS through dependents
-                const queue = [{ file, depth: 0 }];
-                const visited = new Set();
-                visited.add(file);
-                while (queue.length > 0) {
-                    const current = queue.shift();
-                    if (current.depth >= maxDepth)
-                        continue;
-                    const dependents = cg.getFileDependents(current.file);
-                    for (const dep of dependents) {
-                        if (visited.has(dep))
-                            continue;
-                        visited.add(dep);
-                        allDependents.add(dep);
-                        if (isTestFile(dep)) {
-                            affectedTests.add(dep);
-                        }
-                        else {
-                            queue.push({ file: dep, depth: current.depth + 1 });
-                        }
-                    }
-                }
-            }
-            const sortedTests = Array.from(affectedTests).sort();
-            // Output
-            if (options.json) {
-                console.log(JSON.stringify({
-                    changedFiles,
-                    affectedTests: sortedTests,
-                    totalDependentsTraversed: allDependents.size,
-                }, null, 2));
-            }
-            else if (options.quiet) {
-                for (const t of sortedTests)
-                    console.log(t);
-            }
-            else {
-                if (sortedTests.length === 0) {
-                    info('No test files affected by the changed files.');
-                }
-                else {
-                    console.log(chalk.bold(`\nAffected test files (${sortedTests.length}):\n`));
-                    for (const t of sortedTests) {
-                        console.log('  ' + chalk.cyan(t));
-                    }
-                    console.log();
-                }
-            }
-            cg.destroy();
-        }
-        catch (err) {
-            error(`Affected analysis failed: ${err instanceof Error ? err.message : String(err)}`);
-            process.exit(1);
-        }
-    });
-    /**
-     * specship install
-     */
-    program
-        .command('install')
-        .description('Install specship MCP server into Claude Code')
-        .option('-l, --location <where>', 'Install location: "global" or "local". Default: prompt')
-        .option('-y, --yes', 'Non-interactive: defaults to --location=global, auto-allow on')
-        .option('--no-permissions', 'Skip writing the auto-allow permissions list')
-        .option('--print-config', 'Print MCP config snippet for Claude Code and exit (no file writes)')
-        // -t/--target is vestigial — kept so existing `--target claude` / `--target auto`
-        // invocations (including our own offline-install scripts) keep working.
-        .option('-t, --target <ids>', '(vestigial) accepted: "claude" | "auto" | "all" | "none"')
-        .action(async (opts) => {
-        if (opts.printConfig) {
-            const { claudeTarget } = await Promise.resolve().then(() => __importStar(require('../installer/targets/claude')));
-            const loc = (opts.location === 'local' ? 'local' : 'global');
-            process.stdout.write(claudeTarget.printConfig(loc));
-            return;
-        }
-        const { runInstallerWithOptions } = await Promise.resolve().then(() => __importStar(require('../installer')));
-        if (opts.location && opts.location !== 'global' && opts.location !== 'local') {
-            error(`--location must be "global" or "local" (got "${opts.location}").`);
-            process.exit(1);
-        }
-        try {
-            // Commander's `--no-permissions` makes `opts.permissions === false`;
-            // omitting the flag leaves it `true` (the positive-form default).
-            // We MUST treat the default-true as "user did not override — let
-            // the orchestrator prompt" and only forward an explicit `false`
-            // (or `true` when --yes implies it). Otherwise the auto-allow
-            // prompt is silently skipped on every interactive run.
-            const explicitNoPermissions = opts.permissions === false;
-            const autoAllow = explicitNoPermissions
-                ? false
-                : opts.yes
-                    ? true
-                    : undefined;
-            await runInstallerWithOptions({
-                target: opts.target,
-                location: opts.location,
-                autoAllow,
-                yes: opts.yes,
-            });
-        }
-        catch (err) {
-            error(err instanceof Error ? err.message : String(err));
-            process.exit(1);
-        }
-    });
-    /**
-     * specship uninstall
-     *
-     * Inverse of `install`. Removes the specship MCP server entry and
-     * permissions from Claude Code. Prompts global-vs-local when not
-     * given. Does NOT delete the `.specship/` index — that's
-     * `specship uninit`.
-     */
-    program
-        .command('uninstall')
-        .description('Remove specship from Claude Code')
-        .option('-l, --location <where>', 'Uninstall location: "global" or "local". Default: prompt')
-        .option('-y, --yes', 'Non-interactive: defaults to --location=global')
-        // vestigial — kept so existing `--target claude` invocations keep working.
-        .option('-t, --target <ids>', '(vestigial) accepted: "claude" | "auto" | "all" | "none"')
-        .action(async (opts) => {
-        const { runUninstaller } = await Promise.resolve().then(() => __importStar(require('../installer')));
-        if (opts.location && opts.location !== 'global' && opts.location !== 'local') {
-            error(`--location must be "global" or "local" (got "${opts.location}").`);
-            process.exit(1);
-        }
-        try {
-            await runUninstaller({
-                target: opts.target,
-                location: opts.location,
-                yes: opts.yes,
-            });
-        }
-        catch (err) {
-            error(err instanceof Error ? err.message : String(err));
-            process.exit(1);
-        }
-    });
-    // =============================================================================
-    // Spec layer / Workflow engine commands (v5)
-    // =============================================================================
-    program
-        .command('drifted [path]')
-        .description('List spec links in concerning states (drifted, broken, orphaned).')
-        .option('-s, --state <list>', 'comma-separated states (default: drifted,broken,orphaned)')
-        .option('-l, --limit <n>', 'max links to print (default: 50)')
-        .option('--fail-on <list>', 'comma-separated states that cause non-zero exit (CI gate)')
-        .option('--json', 'emit JSON')
-        .action(async (pathArg, options) => {
-        const projectRoot = path.resolve(pathArg ?? process.cwd());
-        if (!(0, directory_1.isInitialized)(projectRoot)) {
-            error(`SpecShip not initialized in ${projectRoot}. Run \`specship init -i\` first.`);
-            process.exit(1);
-        }
-        const { SpecShip } = await loadSpecShip();
-        const cg = await SpecShip.open(projectRoot);
-        try {
-            const states = (options.state ?? 'drifted,broken,orphaned')
-                .split(',')
-                .map((s) => s.trim())
-                .filter(Boolean);
-            const limit = options.limit ? Math.max(1, parseInt(options.limit, 10) || 50) : 50;
-            const links = cg.getSpecQueries().getLinksByState(states).slice(0, limit);
-            if (options.json) {
-                // eslint-disable-next-line no-console
-                console.log(JSON.stringify({ count: links.length, links }, null, 2));
-            }
-            else if (links.length === 0) {
-                // eslint-disable-next-line no-console
-                console.log(`No links in states: ${states.join(', ')}. ✨ Drift queue is clean.`);
-            }
-            else {
-                for (const link of links) {
-                    const drift = link.driftAxis ? ` [drift=${link.driftAxis}]` : '';
-                    // eslint-disable-next-line no-console
-                    console.log(`#${link.id} [${link.state}${drift}] ${link.specId} → ${link.targetFilePath}:${link.targetQualifiedName} <${link.provenance}>`);
-                }
-            }
-            if (options.failOn) {
-                const failStates = options.failOn.split(',').map((s) => s.trim()).filter(Boolean);
-                const offending = links.filter((l) => failStates.includes(l.state));
-                if (offending.length > 0) {
-                    process.exit(1);
-                }
-            }
-        }
-        finally {
-            cg.close();
-        }
-    });
-    program
-        .command('workflow <action> [arg]')
-        .description('Workflow engine: list | run <name> | resume <runId> | cancel <runId> | approve <runId> | reject <runId> | runs')
-        .option('-i, --input <kv...>', 'workflow inputs as KEY=VALUE (repeatable)')
-        .option('--path <projectRoot>', 'project root (default: cwd)')
-        .option('--comment <text>', 'comment for approve/reject')
-        .option('--reason <text>', 'reason for cancel/reject')
-        .option('--json', 'emit JSON where applicable')
-        .action(async (action, arg, options) => {
-        const projectRoot = path.resolve(options.path ?? process.cwd());
-        if (!(0, directory_1.isInitialized)(projectRoot)) {
-            error(`SpecShip not initialized in ${projectRoot}. Run \`specship init -i\` first.`);
-            process.exit(1);
-        }
-        const { SpecShip } = await loadSpecShip();
-        const { discoverWorkflows, loadWorkflowByName } = await Promise.resolve().then(() => __importStar(require('../workflows/discovery')));
-        const { WorkflowExecutor } = await Promise.resolve().then(() => __importStar(require('../workflows/executor')));
-        const { WorktreeProvider } = await Promise.resolve().then(() => __importStar(require('../isolation/worktree')));
-        const cg = await SpecShip.open(projectRoot);
-        try {
-            const specQueries = cg.getSpecQueries();
-            const worktrees = new WorktreeProvider(specQueries);
-            const executor = new WorkflowExecutor(specQueries, worktrees);
-            switch (action) {
-                case 'list': {
-                    const result = discoverWorkflows(projectRoot);
-                    if (options.json) {
-                        // eslint-disable-next-line no-console
-                        console.log(JSON.stringify({
-                            workflows: result.workflows.map((w) => ({
-                                name: w.workflow.name,
-                                scope: w.scope,
-                                sourcePath: w.sourcePath,
-                                description: w.workflow.description,
-                                nodes: w.workflow.nodes.length,
-                                requires: w.workflow.requires,
-                            })),
-                            errors: result.errors,
-                        }, null, 2));
-                    }
-                    else {
-                        for (const w of result.workflows) {
-                            // eslint-disable-next-line no-console
-                            console.log(`  [${w.scope}] ${w.workflow.name} (${w.workflow.nodes.length} nodes) — ${w.workflow.description ?? ''}`);
-                        }
-                        if (result.errors.length > 0) {
-                            // eslint-disable-next-line no-console
-                            console.error(`\n${result.errors.length} workflow file(s) had errors:`);
-                            for (const e of result.errors) {
-                                // eslint-disable-next-line no-console
-                                console.error(`  ${e.sourcePath}:`);
-                                for (const er of e.errors) {
-                                    // eslint-disable-next-line no-console
-                                    console.error(`    ${er.path}: ${er.message}`);
-                                }
-                            }
-                        }
-                    }
-                    break;
-                }
-                case 'run': {
-                    if (!arg) {
-                        error('workflow run requires a workflow name');
-                        process.exit(1);
-                    }
-                    const loaded = loadWorkflowByName(projectRoot, arg);
-                    if (!loaded) {
-                        error(`Workflow "${arg}" not found. Use \`specship workflow list\` to see available workflows.`);
-                        process.exit(1);
-                    }
-                    const inputs = {};
-                    for (const kv of options.input ?? []) {
-                        const eqIdx = kv.indexOf('=');
-                        if (eqIdx <= 0) {
-                            error(`--input must be KEY=VALUE (got "${kv}")`);
-                            process.exit(1);
-                        }
-                        inputs[kv.slice(0, eqIdx)] = kv.slice(eqIdx + 1);
-                    }
-                    // Check required inputs.
-                    for (const inp of loaded.workflow.inputs ?? []) {
-                        if (inp.required && !(inp.name in inputs)) {
-                            error(`Required input missing: --input ${inp.name}=...`);
-                            process.exit(1);
-                        }
-                    }
-                    const result = await executor.start(loaded.workflow, {
-                        projectRoot,
-                        inputs,
-                        variables: {
-                            ARTIFACTS_DIR: path.join(projectRoot, '.specship', 'artifacts'),
-                            CONTEXT: projectRoot,
-                        },
-                    });
-                    if (options.json) {
-                        // eslint-disable-next-line no-console
-                        console.log(JSON.stringify({
-                            runId: result.run.id,
-                            status: result.run.status,
-                            isolationEnvId: result.run.isolationEnvId,
-                            nodeStates: Object.fromEntries(result.nodeStates),
-                        }, null, 2));
-                    }
-                    else {
-                        // eslint-disable-next-line no-console
-                        console.log(`Run ${result.run.id} → ${result.run.status}`);
-                        if (result.run.isolationEnvId) {
-                            // eslint-disable-next-line no-console
-                            console.log(`Worktree: ${result.run.isolationEnvId}`);
-                        }
-                        if (result.run.errorMessage) {
-                            // eslint-disable-next-line no-console
-                            console.log(`Error: ${result.run.errorMessage}`);
-                        }
-                    }
-                    if (result.run.status === 'failed')
-                        process.exit(1);
-                    break;
-                }
-                case 'resume': {
-                    if (!arg) {
-                        error('workflow resume requires a runId');
-                        process.exit(1);
-                    }
-                    const run = specQueries.getWorkflowRunById(arg);
-                    if (!run) {
-                        error(`Run ${arg} not found`);
-                        process.exit(1);
-                    }
-                    const loaded = loadWorkflowByName(projectRoot, run.workflowName);
-                    if (!loaded) {
-                        error(`Workflow "${run.workflowName}" no longer exists`);
-                        process.exit(1);
-                    }
-                    const result = await executor.resume(loaded.workflow, arg, {
-                        projectRoot,
-                        inputs: run.inputs,
-                        variables: {
-                            ARTIFACTS_DIR: path.join(projectRoot, '.specship', 'artifacts'),
-                            CONTEXT: projectRoot,
-                        },
-                    });
-                    // eslint-disable-next-line no-console
-                    console.log(`Run ${result.run.id} → ${result.run.status}`);
-                    if (result.run.status === 'failed')
-                        process.exit(1);
-                    break;
-                }
-                case 'cancel': {
-                    if (!arg) {
-                        error('workflow cancel requires a runId');
-                        process.exit(1);
-                    }
-                    executor.cancel(arg, options.reason ?? 'cancelled via CLI');
-                    // eslint-disable-next-line no-console
-                    console.log(`Run ${arg} cancelled`);
-                    break;
-                }
-                case 'approve': {
-                    if (!arg) {
-                        error('workflow approve requires a runId');
-                        process.exit(1);
-                    }
-                    executor.approve(arg, options.comment);
-                    // eslint-disable-next-line no-console
-                    console.log(`Run ${arg} approved. Call \`specship workflow resume ${arg}\` to continue.`);
-                    break;
-                }
-                case 'reject': {
-                    if (!arg) {
-                        error('workflow reject requires a runId');
-                        process.exit(1);
-                    }
-                    executor.reject(arg, options.reason);
-                    // eslint-disable-next-line no-console
-                    console.log(`Run ${arg} rejected`);
-                    break;
-                }
-                case 'runs': {
-                    const runs = specQueries.getAllWorkflowRuns(50);
-                    if (options.json) {
-                        // eslint-disable-next-line no-console
-                        console.log(JSON.stringify(runs, null, 2));
-                    }
-                    else if (runs.length === 0) {
-                        // eslint-disable-next-line no-console
-                        console.log('No runs yet.');
-                    }
-                    else {
-                        for (const r of runs) {
-                            const dur = r.completedAt
-                                ? `${Math.round((r.completedAt - (r.startedAt ?? r.createdAt)) / 1000)}s`
-                                : '—';
-                            // eslint-disable-next-line no-console
-                            console.log(`${r.id.substring(0, 8)} [${r.status}] ${r.workflowName} (${dur})`);
-                        }
-                    }
-                    break;
-                }
-                default:
-                    error(`Unknown workflow action "${action}". Use: list | run | resume | cancel | approve | reject | runs`);
-                    process.exit(1);
-            }
-        }
-        finally {
-            cg.close();
-        }
-    });
-    // Parse and run
-    program.parse();
-} // end main()
-//# sourceMappingURL=specship.js.map