@securecode-ai/mcp 0.4.0 → 0.4.2

package/dist/tools/agentMemoryTools.js

@@ -0,0 +1,107 @@
+"use strict";
+/**
+ * MCP tools for agent memory management — record false positives,
+ * view memory, and clear memory.
+ *
+ * These let the user (or the VS Code extension) dismiss findings as false
+ * positives so the agent learns not to repeat them in future scans.
+ *
+ * Storage: <workspaceRoot>/.securecode/agent-memory.json (per-workspace)
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.toolRecordFalsePositive = toolRecordFalsePositive;
+exports.toolGetAgentMemory = toolGetAgentMemory;
+exports.toolClearAgentMemory = toolClearAgentMemory;
+exports.toolAddKnownFact = toolAddKnownFact;
+const agentMemory_1 = require("../project-map/agentMemory");
+/** record_false_positive — dismiss a finding so the agent won't report it again. */
+async function toolRecordFalsePositive(ctx, args) {
+    const required = ['filePath', 'findingType', 'line', 'evidence', 'reason'];
+    for (const field of required) {
+        if (!args[field]) {
+            throw new Error(`Missing required parameter '${field}' for record_false_positive.`);
+        }
+    }
+    const entry = (0, agentMemory_1.recordFalsePositive)(ctx.workspaceRoot, {
+        filePath: args.filePath,
+        findingType: args.findingType,
+        line: args.line,
+        evidence: args.evidence,
+        reason: args.reason,
+        pattern: args.pattern,
+        codeSnippet: args.codeSnippet,
+    });
+    if (!entry) {
+        return { success: false, error: 'Invalid input — could not record false positive.' };
+    }
+    return {
+        success: true,
+        recorded: {
+            id: entry.id,
+            findingType: entry.findingType,
+            pattern: entry.pattern,
+            reason: entry.reason,
+            addedAt: entry.addedAt,
+        },
+        message: `False positive recorded. The agent will not report similar patterns in future scans of this workspace.`,
+    };
+}
+/** get_agent_memory — view all false positives and known facts. */
+async function toolGetAgentMemory(ctx, _args) {
+    const memory = (0, agentMemory_1.loadAgentMemory)(ctx.workspaceRoot);
+    return {
+        falsePositives: {
+            count: memory.falsePositives.length,
+            entries: memory.falsePositives.map(fp => ({
+                id: fp.id,
+                findingType: fp.findingType,
+                file: fp.file,
+                line: fp.line,
+                pattern: fp.pattern,
+                reason: fp.reason,
+                addedAt: fp.addedAt,
+            })),
+        },
+        knownFacts: {
+            count: memory.knownFacts.length,
+            entries: memory.knownFacts.map(kf => ({
+                id: kf.id,
+                fact: kf.fact,
+                source: kf.source,
+                addedAt: kf.addedAt,
+            })),
+        },
+        formatted: (0, agentMemory_1.formatMemoryForPrompt)(memory),
+    };
+}
+/** clear_agent_memory — remove all false positives and known facts. */
+async function toolClearAgentMemory(ctx, args) {
+    // If a specific false-positive ID is given, remove just that one
+    if (args.id) {
+        const removed = (0, agentMemory_1.removeFalsePositive)(ctx.workspaceRoot, args.id);
+        return { success: removed, message: removed ? `Removed false positive ${args.id}.` : `False positive ${args.id} not found.` };
+    }
+    const cleared = (0, agentMemory_1.clearAgentMemory)(ctx.workspaceRoot);
+    return {
+        success: cleared,
+        message: cleared
+            ? 'All agent memory cleared (false positives + known facts).'
+            : 'No agent memory file found — nothing to clear.',
+    };
+}
+/** add_known_fact — add a fact about the project the agent should know. */
+async function toolAddKnownFact(ctx, args) {
+    if (!args.fact || !args.source) {
+        throw new Error('Missing required parameters "fact" and "source" for add_known_fact.');
+    }
+    const entry = (0, agentMemory_1.addKnownFact)(ctx.workspaceRoot, args.fact, args.source);
+    if (!entry) {
+        return { success: false, message: 'Fact already exists (duplicate).' };
+    }
+    return {
+        success: true,
+        recorded: { id: entry.id, fact: entry.fact, source: entry.source, addedAt: entry.addedAt },
+        message: 'Known fact added. The agent will use this in future scans.',
+    };
+}
+//# sourceMappingURL=agentMemoryTools.js.map

package/dist/tools/agentMemoryTools.js.map

@@ -0,0 +1 @@
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package/dist/tools/agentScan.js

@@ -22,6 +22,8 @@ exports.toolAgentScan = toolAgentScan;
 const client_1 = require("../api/client");
 const files_1 = require("../utils/files");
 const mapContext_1 = require("../project-map/mapContext");
+const scanCache_1 = require("../project-map/scanCache");
+const agentMemory_1 = require("../project-map/agentMemory");
 const agentScanLoop_1 = require("../attack/agentScanLoop");
 function mapFindingsToCandidates(findings) {
     return findings.map(f => ({
@@ -32,9 +34,9 @@ function mapFindingsToCandidates(findings) {
         definitionContext: f.why,
     }));
 }
-/** Only prove high/critical findings — don't waste credits on low/medium. */
+/** Prove high/critical/medium findings — skip only low. */
 function shouldProve(finding) {
-    return finding.severity === 'critical' || finding.severity === 'high';
+    return finding.severity === 'critical' || finding.severity === 'high' || finding.severity === 'medium';
 }
 async function toolAgentScan(ctx, args) {
     const progress = args._progress;
@@ -55,6 +57,35 @@ async function toolAgentScan(ctx, args) {
     else {
         throw new Error('Either filePath or code must be provided.');
     }
+    // 1b. Validate the code — empty, binary, or too-large files cause confusing
+    // downstream errors (HTTP 400/413) that the user can't interpret.
+    // The API server has a 2MB body limit; we cap at 1.5MB to leave room for
+    // the JSON envelope and transcript.
+    const MAX_FILE_BYTES = 1_500_000;
+    if (code.trim().length === 0) {
+        return {
+            status: 'completed',
+            summary: 'File is empty — nothing to scan.',
+            agentFindings: [],
+            findings: [],
+            stepsUsed: 0,
+            costSpentUsd: 0,
+            transcript: [],
+            cached: false,
+            provenCount: 0,
+        };
+    }
+    // Binary file detection: if the first 1000 bytes contain a NUL byte, it's
+    // almost certainly binary (compiled, image, archive). Sending it to the LLM
+    // would produce garbage results.
+    const headBytes = Buffer.from(code.slice(0, 1000), 'utf8');
+    if (headBytes.includes(0)) {
+        throw new Error('Cannot scan binary file. SecureCode only scans text source files (.ts, .js, .py, etc.).');
+    }
+    if (Buffer.byteLength(code, 'utf8') > MAX_FILE_BYTES) {
+        const sizeMB = (Buffer.byteLength(code, 'utf8') / 1_000_000).toFixed(1);
+        throw new Error(`File too large (${sizeMB}MB). Maximum is 1.5MB. Split the file or scan a specific section using the API directly.`);
+    }
     // 2. Build endpoint context from the project map
     let endpointContext = [];
     if (filePath) {
@@ -65,14 +96,53 @@ async function toolAgentScan(ctx, args) {
             // best-effort — proceed without endpoint context
         }
     }
+    // 2b. Check scan cache — if the file hasn't changed, return cached results
+    const skipCacheRead = !!args._noCache;
+    const useCache = !!filePath;
+    if (useCache && !skipCacheRead) {
+        try {
+            const cached = (0, scanCache_1.getCachedScan)(ctx.workspaceRoot, filePath, code);
+            if (cached) {
+                if (progress)
+                    progress(1, 1, 'Cached result — file unchanged since last scan.');
+                return {
+                    status: cached.status,
+                    summary: cached.summary || 'Agent completed (cached).',
+                    agentFindings: cached.findings,
+                    findings: [],
+                    stepsUsed: cached.stepsUsed,
+                    costSpentUsd: 0,
+                    transcript: [],
+                    cached: true,
+                    provenCount: cached.findings.filter((f) => f.proven === 'PROVEN').length,
+                };
+            }
+        }
+        catch (err) {
+            // Cache read failure (corrupt file, permissions, etc) should NOT
+            // block the scan — just skip the cache and proceed.
+            console.warn(`[Agent Scan] Cache read skipped: ${err?.message || err}`);
+        }
+    }
     // 3. Run the agent loop
+    // Load workspace memory (false positives + known facts) to inject into target
+    let workspaceMemory;
+    try {
+        const memory = (0, agentMemory_1.loadAgentMemory)(ctx.workspaceRoot);
+        workspaceMemory = (0, agentMemory_1.formatMemoryForPrompt)(memory) || undefined;
+    }
+    catch {
+        // best-effort — proceed without memory
+    }
     const target = {
         filePath: filePath || 'inline-code',
         language,
         fileContent: code,
         endpointContext,
+        workspaceMemory,
     };
     const agentResult = await (0, agentScanLoop_1.runAgentScan)(ctx, target, {
+        signal: args._signal,
         onProgress: (steps, max, msg) => {
             if (progress)
                 progress(steps, max, msg);
@@ -91,42 +161,103 @@ async function toolAgentScan(ctx, args) {
     let proveIdx = 0;
     for (const finding of agentResult.findings) {
         if (!shouldProve(finding)) {
-            provenFindings.push({ ...finding, proven: 'SKIPPED', provenReason: 'Low/medium severity — not proven' });
+            provenFindings.push({ ...finding, proven: 'SKIPPED', provenReason: 'Low severity — not proven' });
             continue;
         }
-        try {
-            if (progress) {
-                proveIdx++;
-                progress(proveIdx, proveable.length, `Proving ${finding.type} at line ${finding.line}...`);
+        if (progress) {
+            proveIdx++;
+            progress(proveIdx, proveable.length, `Proving ${finding.type} at line ${finding.line}...`);
+        }
+        let proved = false;
+        for (let attempt = 1; attempt <= 2; attempt++) {
+            try {
+                const proveResp = await client.postJson('/sandbox/prove', {
+                    code,
+                    language,
+                    vulnerabilityType: finding.type,
+                    line: finding.line,
+                    lineEnd: finding.lineEnd,
+                    evidence: finding.evidence,
+                    why: finding.why,
+                });
+                provenFindings.push({
+                    ...finding,
+                    proven: proveResp.proven,
+                    provenReason: proveResp.rationale || proveResp.skipReason || proveResp.sandbox?.reason,
+                });
+                proved = true;
+                break;
+            }
+            catch (err) {
+                if (attempt === 1) {
+                    console.warn(`[Agent Scan] Prove attempt 1 failed: ${err.message}. Retrying...`);
+                    await new Promise(r => setTimeout(r, 2000));
+                }
+                else {
+                    provenFindings.push({
+                        ...finding,
+                        proven: 'INCONCLUSIVE',
+                        provenReason: `Sandbox prove failed after 2 attempts: ${err.message || err}`,
+                    });
+                }
             }
-            const proveResp = await client.postJson('/sandbox/prove', {
+        }
+    }
+    // 4b. Generate fixes for proven/suspected findings
+    const fixableFindings = provenFindings.filter(f => f.proven === 'PROVEN' || (f.proven !== 'UNPROVEN' && f.confidence >= 60));
+    if (fixableFindings.length > 0 && progress) {
+        progress(0, fixableFindings.length, `Generating fixes for ${fixableFindings.length} finding(s)...`);
+    }
+    let fixIdx = 0;
+    for (const finding of fixableFindings) {
+        if (progress) {
+            fixIdx++;
+            progress(fixIdx, fixableFindings.length, `Fixing ${finding.type} at line ${finding.line}...`);
+        }
+        try {
+            const fixResp = await client.postJson('/fix', {
                 code,
                 language,
-                vulnerabilityType: finding.type,
-                line: finding.line,
-                lineEnd: finding.lineEnd,
-                evidence: finding.evidence,
-                why: finding.why,
-            });
-            provenFindings.push({
-                ...finding,
-                proven: proveResp.proven,
-                provenReason: proveResp.rationale || proveResp.skipReason || proveResp.sandbox?.reason,
+                vulnerability: {
+                    type: finding.type,
+                    line_start: finding.line,
+                    line_end: finding.lineEnd || finding.line,
+                    evidence_snippet: finding.evidence,
+                },
             });
+            if (fixResp.fixed_code) {
+                finding.fix = {
+                    fixedCode: fixResp.fixed_code,
+                    replaceRange: { start_line: finding.line, end_line: finding.lineEnd || finding.line },
+                    fixSummary: fixResp.fix_summary || '',
+                    importsNeeded: fixResp.imports_needed,
+                    confidence: fixResp.confidence,
+                };
+            }
         }
         catch (err) {
-            // Insufficient credits or API error — skip proving, mark as INCONCLUSIVE
-            provenFindings.push({
-                ...finding,
-                proven: 'INCONCLUSIVE',
-                provenReason: `Sandbox prove failed: ${err.message || err}`,
-            });
+            // Best-effort — finding stays without fix
+            console.warn(`[Agent Scan] Fix generation failed for ${finding.type} at L${finding.line}: ${err.message}`);
         }
     }
     // 5. Map findings → CandidateContext[]
     const candidateContexts = mapFindingsToCandidates(provenFindings);
     // 6. If no findings, return early
     if (candidateContexts.length === 0) {
+        if (useCache) {
+            try {
+                (0, scanCache_1.writeCachedScan)(ctx.workspaceRoot, filePath, code, {
+                    findings: provenFindings,
+                    status: agentResult.status,
+                    summary: agentResult.summary,
+                    stepsUsed: agentResult.stepsUsed,
+                    costSpentUsd: agentResult.costSpentUsd,
+                });
+            }
+            catch (err) {
+                console.warn(`[Agent Scan] Cache write skipped: ${err?.message || err}`);
+            }
+        }
         return {
             status: agentResult.status,
             summary: agentResult.summary || 'Agent completed with no findings.',
@@ -140,15 +271,57 @@ async function toolAgentScan(ctx, args) {
     // 7. POST /scan with scanDepth: 'agent' + candidateContexts
     //    This skips Scout and sends the agent's candidates directly to Juror
     //    + Phase 3 for verification.
-    const scanResp = await client.postJson('/scan', {
-        code,
-        language,
-        ...(filePath ? { filePath } : {}),
-        scanDepth: 'agent',
-        candidateContexts,
-        ...(endpointContext.length > 0 ? { endpointContext } : {}),
-    });
-    // 8. Return merged result with proven stamps
+    //    If this call fails, return the agent findings without Juror
+    //    verification (degraded mode) instead of throwing everything away.
+    let scanResp = null;
+    try {
+        scanResp = await client.postJson('/scan', {
+            code,
+            language,
+            ...(filePath ? { filePath } : {}),
+            scanDepth: 'agent',
+            candidateContexts,
+            ...(endpointContext.length > 0 ? { endpointContext } : {}),
+        });
+    }
+    catch (err) {
+        // Juror verification failed — return agent findings as-is (degraded).
+        // This is better than throwing, which would lose all the agent's work.
+        console.warn(`[Agent Scan] Juror verification failed (${err?.message || err}). Returning agent findings without verification.`);
+    }
+    // 8. Write to cache before returning
+    if (useCache) {
+        try {
+            (0, scanCache_1.writeCachedScan)(ctx.workspaceRoot, filePath, code, {
+                findings: provenFindings,
+                status: agentResult.status,
+                summary: agentResult.summary,
+                stepsUsed: agentResult.stepsUsed,
+                costSpentUsd: agentResult.costSpentUsd,
+            });
+        }
+        catch (err) {
+            console.warn(`[Agent Scan] Cache write skipped: ${err?.message || err}`);
+        }
+    }
+    // 9. Return merged result with proven stamps
+    //    If Juror failed, scanResp is null — return agent findings as verified=false
+    if (!scanResp) {
+        return {
+            status: agentResult.status,
+            summary: (agentResult.summary || 'Agent completed') + ' (Juror verification skipped — degraded)',
+            agentFindings: provenFindings,
+            verifiedFindings: [],
+            allFindings: [],
+            degraded: true,
+            stepsUsed: agentResult.stepsUsed,
+            costSpentUsd: agentResult.costSpentUsd,
+            transcript: agentResult.transcript,
+            provenCount: provenFindings.filter(f => f.proven === 'PROVEN').length,
+            unprovenCount: provenFindings.filter(f => f.proven === 'UNPROVEN').length,
+            inconclusiveCount: provenFindings.filter(f => f.proven === 'INCONCLUSIVE').length,
+        };
+    }
     return {
         status: agentResult.status,
         summary: agentResult.summary,

package/dist/tools/agentScan.js.map

@@ -1 +1 @@
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package/dist/utils/files.js

@@ -47,11 +47,28 @@ const SUPPORTED_EXTENSIONS = {
     '.ts': 'typescript',
     '.tsx': 'typescriptreact',
     '.py': 'python',
-    '.php': 'php',
+    // Note: .php is intentionally omitted — the MCP parserLoader has no
+    // tree-sitter-php.wasm. PHP files will return 'Unsupported file type'
+    // with a clear message instead of silently producing zero findings.
+    '.json': 'json',
+    '.yaml': 'yaml',
+    '.yml': 'yaml',
+    '.toml': 'toml',
+    '.ini': 'ini',
+    '.env': 'env',
+    '.cfg': 'ini',
+    '.conf': 'ini',
+    '.config': 'ini',
 };
 function inferLanguage(filePath) {
     const ext = path.extname(filePath).toLowerCase();
-    return SUPPORTED_EXTENSIONS[ext];
+    if (SUPPORTED_EXTENSIONS[ext])
+        return SUPPORTED_EXTENSIONS[ext];
+    // Dotfiles like .env, .env.local, .env.production have no extension
+    const base = path.basename(filePath).toLowerCase();
+    if (base === '.env' || /^\.env\.[\w.-]+$/.test(base))
+        return 'env';
+    return undefined;
 }
 function isSupportedFile(filePath) {
     return inferLanguage(filePath) !== undefined;

package/dist/utils/files.js.map

@@ -1 +1 @@
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package/dist/utils/listFiles.d.ts

@@ -0,0 +1,17 @@
+/**
+ * File listing utility — walks a directory and returns source files,
+ * respecting .securecodeignore and skip directories.
+ */
+export interface ListFilesOptions {
+    /** Directory to list (relative to workspace root). Defaults to root. */
+    dir?: string;
+    /** Optional glob filter (e.g. "*.ts"). */
+    glob?: string;
+}
+export interface FileEntry {
+    path: string;
+    size: number;
+    lines: number;
+}
+export declare function listFiles(workspaceRoot: string, options?: ListFilesOptions): FileEntry[];
+export declare function formatFileList(files: FileEntry[]): string;

package/dist/utils/listFiles.js

@@ -0,0 +1,126 @@
+"use strict";
+/**
+ * File listing utility — walks a directory and returns source files,
+ * respecting .securecodeignore and skip directories.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.listFiles = listFiles;
+exports.formatFileList = formatFileList;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const ignore_1 = require("../utils/ignore");
+const SUPPORTED_EXTENSIONS = new Set([
+    '.js', '.jsx', '.mjs', '.cjs', '.ts', '.tsx', '.py',
+]);
+const MAX_FILES = 500;
+function matchGlob(filePath, glob) {
+    if (!glob)
+        return true;
+    // Simple glob: *.ts, *.py, etc — match the extension
+    if (glob.startsWith('*.')) {
+        const ext = glob.slice(1); // '.ts'
+        return filePath.endsWith(ext);
+    }
+    // Otherwise treat as substring match
+    return filePath.includes(glob);
+}
+function listFiles(workspaceRoot, options = {}) {
+    const ignorePatterns = (0, ignore_1.readSecurecodeIgnore)(workspaceRoot);
+    const searchDir = options.dir
+        ? path.resolve(workspaceRoot, options.dir)
+        : workspaceRoot;
+    const results = [];
+    const stack = [searchDir];
+    let count = 0;
+    while (stack.length > 0 && count < MAX_FILES) {
+        const dir = stack.pop();
+        let entries;
+        try {
+            entries = fs.readdirSync(dir, { withFileTypes: true });
+        }
+        catch {
+            continue;
+        }
+        for (const entry of entries) {
+            if (count >= MAX_FILES)
+                break;
+            const fullPath = path.join(dir, entry.name);
+            if (entry.isDirectory()) {
+                if (!ignore_1.SKIP_DIRS.has(entry.name) && !entry.name.startsWith('.')) {
+                    stack.push(fullPath);
+                }
+            }
+            else if (entry.isFile()) {
+                const ext = path.extname(entry.name).toLowerCase();
+                if (!SUPPORTED_EXTENSIONS.has(ext))
+                    continue;
+                if ((0, ignore_1.isSecretFileName)(fullPath))
+                    continue;
+                const relPath = path.relative(workspaceRoot, fullPath).replace(/\\/g, '/');
+                if ((0, ignore_1.isIgnored)(relPath, ignorePatterns))
+                    continue;
+                if (!matchGlob(relPath, options.glob))
+                    continue;
+                let size = 0;
+                let lines = 0;
+                try {
+                    const content = fs.readFileSync(fullPath, 'utf8');
+                    size = Buffer.byteLength(content);
+                    lines = content.split('\n').length;
+                }
+                catch { /* best effort */ }
+                results.push({ path: relPath, size, lines });
+                count++;
+            }
+        }
+    }
+    results.sort((a, b) => a.path.localeCompare(b.path));
+    return results;
+}
+function formatFileList(files) {
+    if (files.length === 0) {
+        return 'No source files found.';
+    }
+    const lines = [`Found ${files.length} source file(s):`];
+    for (const f of files) {
+        const sizeStr = f.size < 1024
+            ? `${f.size}B`
+            : `${(f.size / 1024).toFixed(1)}KB`;
+        lines.push(`  ${f.path} (${f.lines}L, ${sizeStr})`);
+    }
+    return lines.join('\n');
+}
+//# sourceMappingURL=listFiles.js.map

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