@science-corporation/synapse 2.0.0 → 2.2.3

package/synapse-api/api/time.proto

@@ -0,0 +1,53 @@
+syntax = "proto3";
+
+package synapse;
+
+/**
+ * Used for precise time synchronization over UDP between clients and a server
+ * In most cases, the server is the Synapse device.enum
+ * 
+ * How it works:
+ *  1. Client generates a random client_id on first connection
+ *  2. Client increments the sequence number on each packet (to detect drops)
+ *  3. Client records the send time and sends the packet to the server over udp.
+ *    - The server port will be available through the Status message
+ *    - Try to timestamp the packet as close as possible to the send to minimize
+ *      the calculated offset error. Future improvements could support hardware timestamps
+ *  4. Server records the receive time
+ *  5. Server immediately echos it back to the client, recording the send time
+ *  6. Client records the receive time when the packet returns
+ * 
+ * With these times, the client can calculate
+ *  - Round Trip Time: (client_receive_time_ns - client_send_time_ns)
+ *  - Network Latency (assumes symmetric paths): rtt / 2
+ *  - Clock offset: https://en.wikipedia.org/wiki/Network_Time_Protocol#Clock_synchronization_algorithm
+ * 
+ * Implementation notes:
+ *  - All timestamps are monotonic nanoseconds since Unix epoch
+ *  - The server acts as a passive reflector
+ *  - Multiple sync packets (8 or so) should be sent with a short period (200 ms) between
+*/
+message TimeSyncPacket {
+    fixed32 client_id = 1;
+    fixed32 sequence = 2;
+
+    fixed64 client_send_time_ns = 3;
+    fixed64 server_receive_time_ns = 4;
+    fixed64 server_send_time_ns = 5;
+    fixed64 client_receive_time_ns = 6;
+}
+
+// Defines the time synchronization method for device timestamps
+enum TimeSource {
+    TIME_SOURCE_UNKNOWN = 0;
+        
+    // Use std::chrono::steady_clock (monotonic, immune to system time changes)
+    // Note: The epoch is implementation-defined (often system boot time)
+    TIME_SOURCE_STEADY_CLOCK = 1;
+  
+    // Calculate timestamps based on sample counter and sampling rate
+    // counter_diff = (counter - first_counter)
+    // timestamp_ns = (counter_diff * 1e9 / sample_rate) + initial_steady_clock_value
+    // Where initial_steady_clock_value = get_steady_clock_now() at start
+    TIME_SOURCE_SAMPLE_COUNTER = 2;
+}

package/dist/demo.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=demo.d.ts.map

package/dist/demo.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"demo.d.ts","sourceRoot":"","sources":["../src/demo.ts"],"names":[],"mappings":""}

package/dist/demo.js

@@ -1,285 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const fs_1 = __importDefault(require("fs"));
-const yargs_1 = __importDefault(require("yargs"));
-const helpers_1 = require("yargs/helpers");
-const api_1 = require("./api/api");
-const config_1 = __importDefault(require("./config"));
-const device_1 = __importDefault(require("./device"));
-const broadband_source_1 = __importDefault(require("./nodes/broadband_source"));
-const optical_stimulation_1 = __importDefault(require("./nodes/optical_stimulation"));
-const stream_in_1 = __importDefault(require("./nodes/stream_in"));
-const stream_out_1 = __importDefault(require("./nodes/stream_out"));
-const discover_1 = require("./utils/discover");
-const enum_1 = require("./utils/enum");
-const ip_1 = require("./utils/ip");
-const cli = (0, yargs_1.default)((0, helpers_1.hideBin)(process.argv))
-    .help()
-    .command("discover", "Discover synapse devices")
-    .command("read", "Read from StreamOut node", {
-    "udp-port": {
-        alias: "p",
-        type: "string",
-        description: "UDP port",
-        default: "50038",
-    },
-    output: {
-        alias: "o",
-        type: "string",
-        description: "Output file",
-    },
-    uri: {
-        alias: "u",
-        type: "string",
-        demandOption: true,
-    },
-})
-    .command("write", "Write to StreamIn node", {
-    input: {
-        alias: "i",
-        type: "string",
-        description: "Input file",
-    },
-    uri: {
-        alias: "u",
-        type: "string",
-        demandOption: true,
-    },
-});
-const info = (device) => __awaiter(void 0, void 0, void 0, function* () {
-    var _a, _b;
-    console.log("Info()");
-    const { status: s, response } = yield device.info();
-    if (!s.ok()) {
-        console.error(s.message);
-        return false;
-    }
-    const { serial, name, status, synapseVersion, firmwareVersion, peripherals, configuration } = response;
-    console.log(` - serial:                         ${serial}`);
-    console.log(` - name:                           ${name}`);
-    console.log(` - synapse version:                ${synapseVersion || "<unknown>"}`);
-    console.log(` - firmware version:               ${firmwareVersion || "<unknown>"}`);
-    console.log(` - status:                         ${status.code} (${(0, enum_1.getName)(api_1.synapse.StatusCode, status.code)})${status.message ? `: "${status.message}"` : ""}`);
-    console.log(`   - state:                          ${(0, enum_1.getName)(api_1.synapse.DeviceState, status.state)}`);
-    console.log(`   - sockets:                        ${((_a = status.sockets) === null || _a === void 0 ? void 0 : _a.length) || 0}`);
-    (_b = status.sockets) === null || _b === void 0 ? void 0 : _b.forEach(({ nodeId, bind }) => {
-        console.log(`     - node [${nodeId}] ${bind}`);
-    });
-    console.log(` - peripherals:                    ${(peripherals === null || peripherals === void 0 ? void 0 : peripherals.length) || 0}`);
-    peripherals === null || peripherals === void 0 ? void 0 : peripherals.forEach(({ name, peripheralId: id, vendor }) => {
-        console.log(`   - [${id}] ${name} (${vendor})`);
-    });
-    if (configuration) {
-        const { nodes } = configuration;
-        console.log(` - configuration:`);
-        console.log(`   - nodes:                        ${(nodes === null || nodes === void 0 ? void 0 : nodes.length) || 0}`);
-        nodes === null || nodes === void 0 ? void 0 : nodes.forEach(({ id, type }) => {
-            console.log(`     - [${id}] (${(0, enum_1.getName)(api_1.synapse.NodeType, type)})`);
-        });
-    }
-    return true;
-});
-const read = (device, argv) => __awaiter(void 0, void 0, void 0, function* () {
-    console.log("Reading from device's StreamOut node...");
-    const { udpPort, output } = argv;
-    let status = null;
-    let stream = null;
-    if (output) {
-        console.log(`Writing to file: ${output}`);
-        stream = fs_1.default.createWriteStream(output);
-    }
-    const onMessage = (msg) => {
-        const value = msg.readUInt32BE();
-        console.log(`StreamOut | recv: ${value}`);
-        if (stream) {
-            stream.write(msg);
-        }
-    };
-    const config = new config_1.default();
-    const nodeEphys = new broadband_source_1.default({
-        peripheralId: 100,
-        signal: {
-            electrode: {
-                channels: [{ id: 0, referenceId: 0, electrodeId: 1 }],
-            },
-        },
-        bitWidth: 12,
-        sampleRateHz: 16000,
-    });
-    const nodeStreamOut = new stream_out_1.default({
-        udpUnicast: {
-            destinationPort: udpPort,
-            destinationAddress: yield (0, ip_1.getClientIp)(),
-        },
-    }, { onMessage });
-    status = config.add([nodeEphys, nodeStreamOut]);
-    status = config.connect(nodeEphys, nodeStreamOut);
-    if (!status.ok()) {
-        console.error("failed to connect nodes: ", status.message);
-        return;
-    }
-    console.log("Configuring device...");
-    status = yield device.configure(config);
-    if (!status.ok()) {
-        console.error("failed to configure device: ", status.message);
-        return;
-    }
-    console.log("Starting device...");
-    status = yield device.start();
-    if (!status.ok()) {
-        console.error("failed to start device: ", status.message);
-        return;
-    }
-    status = yield nodeStreamOut.start();
-    if (!status.ok()) {
-        console.error("failed to start stream out node: ", status.message);
-        return;
-    }
-    let running = true;
-    process.on("SIGINT", function () {
-        if (!running) {
-            return;
-        }
-        running = false;
-        nodeStreamOut.stop();
-        device.stop();
-        process.exit();
-    });
-});
-const write = (device, argv) => __awaiter(void 0, void 0, void 0, function* () {
-    const { input } = argv;
-    if (input && !fs_1.default.existsSync(input)) {
-        console.error(`File not found: ${input}`);
-        return;
-    }
-    console.log("Writing to device's StreamOut node...");
-    let status = null;
-    const config = new config_1.default();
-    const nodeStreamIn = new stream_in_1.default({
-        dataType: api_1.synapse.DataType.kBroadband,
-    });
-    const nodeOptical = new optical_stimulation_1.default();
-    status = config.add([nodeStreamIn, nodeOptical]);
-    if (!status.ok()) {
-        console.error("Failed to add nodes: ", status.message);
-        return;
-    }
-    status = config.connect(nodeStreamIn, nodeOptical);
-    if (!status.ok()) {
-        console.error("Failed to connect nodes: ", status.message);
-        return;
-    }
-    console.log("Configuring device...");
-    status = yield device.configure(config);
-    if (!status.ok()) {
-        console.error("Failed to configure device: ", status.message);
-        return;
-    }
-    console.log("Starting device...");
-    status = yield device.start();
-    if (!status.ok()) {
-        console.error("Failed to start device: ", status.message);
-        return;
-    }
-    let running = true;
-    process.on("SIGINT", function () {
-        console.log("SIGINT", running);
-        if (!running)
-            return;
-        console.log("stopping...");
-        running = false;
-        device.stop();
-        process.exit();
-    });
-    if (input) {
-        console.log(`Reading from file: ${input}`);
-        fs_1.default.open(input, "r", (err, fd) => {
-            console.log("Opened file");
-            const kBufSize = 4;
-            const buffer = Buffer.alloc(kBufSize);
-            if (err) {
-                console.error(err);
-                return;
-            }
-            const read = () => {
-                if (!running) {
-                    fs_1.default.close(fd, () => { });
-                    return;
-                }
-                fs_1.default.read(fd, buffer, 0, kBufSize, null, (err, n) => {
-                    if (err) {
-                        console.error(err);
-                        return;
-                    }
-                    if (n === 0) {
-                        return;
-                    }
-                    console.log(`StreamIn | send: ${buffer.readUInt32BE()}`);
-                    nodeStreamIn.write(buffer.slice(0, n));
-                    read();
-                });
-            };
-            read();
-        });
-        return;
-    }
-    let i = 0;
-    const kInterval = 1;
-    const buffer = Buffer.alloc(4);
-    const write = () => {
-        if (!running) {
-            device.stop();
-            return;
-        }
-        buffer.writeUInt32BE(i++);
-        nodeStreamIn.write(buffer);
-        setTimeout(write, kInterval);
-    };
-    setTimeout(write, kInterval);
-});
-const main = () => __awaiter(void 0, void 0, void 0, function* () {
-    const argv = cli.parseSync();
-    if (argv._.includes("discover")) {
-        const devices = yield (0, discover_1.discover)();
-        for (const device of devices) {
-            const addr = `${device.host}:${device.port}`;
-            const serial = `[${device.serial}]`;
-            console.log(`${addr.padEnd(21)} ${device.capability.padStart(16)} ${serial.padStart(34)} "${device.name}"`);
-        }
-        return;
-    }
-    const { uri } = argv;
-    if (!uri) {
-        console.error("Missing URI");
-        return;
-    }
-    console.log(`Connecting to device @ ${uri}`);
-    const device = new device_1.default(uri);
-    try {
-        yield info(device);
-    }
-    catch (err) {
-        console.error(`Failed to get device info (${err.code}): ${err.message}`);
-        return;
-    }
-    if (argv._.includes("read")) {
-        return read(device, argv);
-    }
-    if (argv._.includes("write")) {
-        return write(device, argv);
-    }
-});
-main();
-//# sourceMappingURL=demo.js.map

package/dist/demo.js.map

@@ -1 +0,0 @@
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package/dist/nodes/stream_in.d.ts

@@ -1,15 +0,0 @@
-import dgram from "dgram";
-import { synapse } from "../api/api";
-import Node from "../node";
-declare class StreamIn extends Node {
-    type: synapse.NodeType;
-    config: synapse.IStreamInConfig;
-    _socket: dgram.Socket;
-    constructor(config?: synapse.IStreamInConfig);
-    write(data: string | Buffer): boolean;
-    toProto(): synapse.NodeConfig;
-    _getAddr: () => string | null;
-    static fromProto(proto: synapse.INodeConfig): StreamIn;
-}
-export default StreamIn;
-//# sourceMappingURL=stream_in.d.ts.map

package/dist/nodes/stream_in.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"stream_in.d.ts","sourceRoot":"","sources":["../../src/nodes/stream_in.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAE1B,OAAO,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AACrC,OAAO,IAAI,MAAM,SAAS,CAAC;AAE3B,cAAM,QAAS,SAAQ,IAAI;IACzB,IAAI,mBAA8B;IAClC,MAAM,EAAE,OAAO,CAAC,eAAe,CAAC;IAChC,OAAO,EAAE,KAAK,CAAC,MAAM,CAAC;gBAEV,MAAM,GAAE,OAAO,CAAC,eAAoB;IAKhD,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO;IAsCrC,OAAO,IAAI,OAAO,CAAC,UAAU;IAM7B,QAAQ,QAAO,MAAM,GAAG,IAAI,CAM1B;IAEF,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,OAAO,CAAC,WAAW,GAAG,QAAQ;CAQvD;AAED,eAAe,QAAQ,CAAC"}

package/dist/nodes/stream_in.js

@@ -1,66 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const dgram_1 = __importDefault(require("dgram"));
-const api_1 = require("../api/api");
-const node_1 = __importDefault(require("../node"));
-class StreamIn extends node_1.default {
-    constructor(config = {}) {
-        super();
-        this.type = api_1.synapse.NodeType.kStreamIn;
-        this._getAddr = () => {
-            if (this.device === null) {
-                return null;
-            }
-            return this.device.uri.split(":")[0];
-        };
-        this.config = config;
-    }
-    write(data) {
-        if (this.device === null) {
-            return false;
-        }
-        const socket = this.device.sockets.find((s) => s.nodeId === this.id);
-        if (!socket) {
-            return false;
-        }
-        const split = socket.bind.split(":");
-        if (split.length !== 2) {
-            return false;
-        }
-        const port = parseInt(split[1]);
-        if (isNaN(port)) {
-            return false;
-        }
-        const host = split[0];
-        if (!host || !port) {
-            return false;
-        }
-        if (!this._socket) {
-            this._socket = dgram_1.default.createSocket("udp4");
-        }
-        try {
-            this._socket.send(data, port, host);
-        }
-        catch (_a) {
-            return false;
-        }
-        return true;
-    }
-    toProto() {
-        return super.toProto({
-            streamIn: this.config,
-        });
-    }
-    static fromProto(proto) {
-        const { streamIn } = proto;
-        if (!streamIn) {
-            throw new Error("Invalid config, missing streamIn");
-        }
-        return new StreamIn(streamIn);
-    }
-}
-exports.default = StreamIn;
-//# sourceMappingURL=stream_in.js.map

package/dist/nodes/stream_in.js.map

@@ -1 +0,0 @@
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package/dist/nodes/stream_out.d.ts

@@ -1,23 +0,0 @@
-import dgram from "dgram";
-import { synapse } from "../api/api";
-import Node from "../node";
-import { Status } from "../utils/status";
-declare class StreamOut extends Node {
-    type: synapse.NodeType;
-    _destinationAddress: string;
-    _destinationPort: number;
-    _label: string;
-    _socket: dgram.Socket | null;
-    _onMessage: ((msg: Buffer) => void) | null;
-    _onError: ((error: Error) => void) | null;
-    constructor(config: synapse.IStreamOutConfig, callbacks?: {
-        onMessage?: (msg: Buffer) => void;
-        onError?: (error: Error) => void;
-    });
-    start(): Promise<Status>;
-    stop(): Promise<Status>;
-    toProto(): synapse.NodeConfig;
-    static fromProto(proto: synapse.INodeConfig): StreamOut;
-}
-export default StreamOut;
-//# sourceMappingURL=stream_out.d.ts.map

package/dist/nodes/stream_out.d.ts.map

@@ -1 +0,0 @@
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package/dist/nodes/stream_out.js

@@ -1,105 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const dgram_1 = __importDefault(require("dgram"));
-const api_1 = require("../api/api");
-const node_1 = __importDefault(require("../node"));
-const status_1 = require("../utils/status");
-const ip_1 = require("../utils/ip");
-const kDefaultStreamOutPort = 50038;
-const kSocketBufferSize = 5 * 1024 * 1024; // 5MB
-class StreamOut extends node_1.default {
-    constructor(config, callbacks) {
-        super();
-        this.type = api_1.synapse.NodeType.kStreamOut;
-        const { udpUnicast } = config || {};
-        this._destinationAddress = udpUnicast === null || udpUnicast === void 0 ? void 0 : udpUnicast.destinationAddress;
-        this._destinationPort = (udpUnicast === null || udpUnicast === void 0 ? void 0 : udpUnicast.destinationPort) || kDefaultStreamOutPort;
-        this._label = config.label;
-        this._onMessage = callbacks === null || callbacks === void 0 ? void 0 : callbacks.onMessage;
-        this._onError = callbacks === null || callbacks === void 0 ? void 0 : callbacks.onError;
-    }
-    start() {
-        return __awaiter(this, void 0, void 0, function* () {
-            try {
-                this._socket = dgram_1.default.createSocket("udp4");
-                if (!this._destinationAddress) {
-                    try {
-                        const ip = yield (0, ip_1.getClientIp)();
-                        if (!ip) {
-                            return new status_1.Status(status_1.StatusCode.INTERNAL, "failed to get client ip");
-                        }
-                        this._destinationAddress = ip;
-                    }
-                    catch (e) {
-                        console.error(e);
-                        return new status_1.Status(status_1.StatusCode.INTERNAL, `failed to get client ip: ${e}`);
-                    }
-                }
-                if (!this._destinationPort) {
-                    this._destinationPort = kDefaultStreamOutPort;
-                }
-                this._socket.on("message", (msg) => {
-                    var _a;
-                    (_a = this._onMessage) === null || _a === void 0 ? void 0 : _a.call(this, msg);
-                });
-                this._socket.on("error", (error) => {
-                    var _a;
-                    (_a = this._onError) === null || _a === void 0 ? void 0 : _a.call(this, error);
-                });
-                yield new Promise((resolve, reject) => {
-                    if (!this._socket)
-                        return reject(new Error("Socket is null"));
-                    this._socket.bind(this._destinationPort, this._destinationAddress, () => {
-                        this._socket.setRecvBufferSize(kSocketBufferSize);
-                        resolve();
-                    });
-                });
-                return new status_1.Status();
-            }
-            catch (e) {
-                return new status_1.Status(status_1.StatusCode.INTERNAL, `failed to start stream out node: ${e}`);
-            }
-        });
-    }
-    stop() {
-        return __awaiter(this, void 0, void 0, function* () {
-            if (this._socket) {
-                this._socket.close();
-            }
-            return new status_1.Status();
-        });
-    }
-    toProto() {
-        const config = {
-            label: this._label,
-            udpUnicast: {
-                destinationAddress: this._destinationAddress,
-                destinationPort: this._destinationPort,
-            },
-        };
-        return super.toProto({
-            streamOut: config,
-        });
-    }
-    static fromProto(proto) {
-        const { streamOut } = proto;
-        if (!streamOut) {
-            throw new Error("Invalid config, missing streamOut");
-        }
-        return new StreamOut(streamOut, undefined);
-    }
-}
-exports.default = StreamOut;
-//# sourceMappingURL=stream_out.js.map

package/dist/nodes/stream_out.js.map

@@ -1 +0,0 @@
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