@sashabogi/foundation 2.1.0 → 2.3.1

package/dist/tools/gaia/storage.js

@@ -83,10 +83,13 @@ export class MemoriaStorage {
         // Memory links table
         this.db.exec(`
       CREATE TABLE IF NOT EXISTS memory_links (
+        link_id TEXT NOT NULL UNIQUE,
         from_memory_id TEXT NOT NULL,
         to_memory_id TEXT NOT NULL,
         link_type TEXT NOT NULL CHECK(link_type IN ('depends_on', 'extends', 'reverts', 'related', 'contradicts')),
         created_at INTEGER NOT NULL,
+        valid_from INTEGER NOT NULL DEFAULT 0,
+        invalidated_at INTEGER,
         PRIMARY KEY (from_memory_id, to_memory_id, link_type),
         FOREIGN KEY (from_memory_id) REFERENCES memories(id) ON DELETE CASCADE,
         FOREIGN KEY (to_memory_id) REFERENCES memories(id) ON DELETE CASCADE
@@ -94,7 +97,11 @@ export class MemoriaStorage {
 
       CREATE INDEX IF NOT EXISTS idx_link_from ON memory_links(from_memory_id);
       CREATE INDEX IF NOT EXISTS idx_link_to ON memory_links(to_memory_id);
+      CREATE INDEX IF NOT EXISTS idx_links_valid_from ON memory_links(valid_from);
+      CREATE INDEX IF NOT EXISTS idx_links_invalidated_at ON memory_links(invalidated_at);
     `);
+        // Idempotent migration: add temporal columns + link_id to existing databases
+        this._migrateLinksSchema();
         // Metadata table
         this.db.exec(`
       CREATE TABLE IF NOT EXISTS metadata (
@@ -105,6 +112,39 @@ export class MemoriaStorage {
       INSERT OR IGNORE INTO metadata (key, value) VALUES ('schema_version', '1');
     `);
     }
+    /**
+     * Idempotent migration: ensures the memory_links table has link_id,
+     * valid_from, and invalidated_at columns. Safe to run on both fresh DBs
+     * (where the table was just created with all columns) and existing DBs
+     * (where these columns may be absent).
+     */
+    _migrateLinksSchema() {
+        const tableInfo = this.db.prepare(`PRAGMA table_info(memory_links)`).all();
+        const columnNames = new Set(tableInfo.map(col => col.name));
+        if (!columnNames.has('link_id')) {
+            this.db.exec(`ALTER TABLE memory_links ADD COLUMN link_id TEXT NOT NULL DEFAULT ''`);
+            // Backfill link_id for all existing rows
+            const rows = this.db.prepare(`SELECT from_memory_id, to_memory_id, link_type FROM memory_links WHERE link_id = ''`).all();
+            const updateStmt = this.db.prepare(`UPDATE memory_links SET link_id = ? WHERE from_memory_id = ? AND to_memory_id = ? AND link_type = ?`);
+            const backfill = this.db.transaction(() => {
+                for (const row of rows) {
+                    updateStmt.run(`lnk_${nanoid()}`, row.from_memory_id, row.to_memory_id, row.link_type);
+                }
+            });
+            backfill();
+            this.db.exec(`CREATE UNIQUE INDEX IF NOT EXISTS idx_link_id ON memory_links(link_id)`);
+        }
+        if (!columnNames.has('valid_from')) {
+            this.db.exec(`ALTER TABLE memory_links ADD COLUMN valid_from INTEGER NOT NULL DEFAULT 0`);
+            // Backfill: valid_from = created_at
+            this.db.exec(`UPDATE memory_links SET valid_from = created_at WHERE valid_from = 0`);
+            this.db.exec(`CREATE INDEX IF NOT EXISTS idx_links_valid_from ON memory_links(valid_from)`);
+        }
+        if (!columnNames.has('invalidated_at')) {
+            this.db.exec(`ALTER TABLE memory_links ADD COLUMN invalidated_at INTEGER`);
+            this.db.exec(`CREATE INDEX IF NOT EXISTS idx_links_invalidated_at ON memory_links(invalidated_at)`);
+        }
+    }
     // ---------------------------------------------------------------------------
     // Core Memory Operations
     // ---------------------------------------------------------------------------
@@ -249,26 +289,59 @@ export class MemoriaStorage {
     // Cross-Memory Links
     // ---------------------------------------------------------------------------
     createLink(link) {
+        const now = Date.now();
         const fullLink = {
-            ...link,
-            created_at: Date.now(),
+            link_id: `lnk_${nanoid()}`,
+            from_memory_id: link.from_memory_id,
+            to_memory_id: link.to_memory_id,
+            link_type: link.link_type,
+            created_at: now,
+            valid_from: link.validFrom ?? now,
+            invalidated_at: null,
         };
         const stmt = this.db.prepare(`
-      INSERT INTO memory_links (from_memory_id, to_memory_id, link_type, created_at)
-      VALUES (@from_memory_id, @to_memory_id, @link_type, @created_at)
+      INSERT INTO memory_links (link_id, from_memory_id, to_memory_id, link_type, created_at, valid_from, invalidated_at)
+      VALUES (@link_id, @from_memory_id, @to_memory_id, @link_type, @created_at, @valid_from, @invalidated_at)
       ON CONFLICT DO NOTHING
     `);
         stmt.run(fullLink);
         return fullLink;
     }
-    getLinks(memoryId) {
+    invalidateLink(linkId, at) {
+        const ts = at ?? Date.now();
+        const existingRow = this.db.prepare(`SELECT * FROM memory_links WHERE link_id = ?`).get(linkId);
+        if (!existingRow) {
+            return {
+                success: false,
+                link: { link_id: linkId, from_memory_id: '', to_memory_id: '', link_type: 'related', created_at: 0, valid_from: 0, invalidated_at: null },
+            };
+        }
+        const existing = this.rowToMemoryLink(existingRow);
+        if (existing.invalidated_at !== null) {
+            return {
+                success: true,
+                link: existing,
+                warning: `Link ${linkId} was already invalidated at ${new Date(existing.invalidated_at).toISOString()}. No change made.`,
+            };
+        }
+        this.db.prepare(`UPDATE memory_links SET invalidated_at = ? WHERE link_id = ?`).run(ts, linkId);
+        const updatedRow = this.db.prepare(`SELECT * FROM memory_links WHERE link_id = ?`).get(linkId);
+        return {
+            success: true,
+            link: this.rowToMemoryLink(updatedRow),
+        };
+    }
+    getLinks(memoryId, asOf) {
+        const cutoff = asOf ?? Date.now();
         const stmt = this.db.prepare(`
       SELECT m.*, ml.link_type
       FROM memory_links ml
       JOIN memories m ON m.id = ml.to_memory_id
       WHERE ml.from_memory_id = ?
+        AND ml.valid_from <= ?
+        AND (ml.invalidated_at IS NULL OR ml.invalidated_at > ?)
     `);
-        const rows = stmt.all(memoryId);
+        const rows = stmt.all(memoryId, cutoff, cutoff);
         const links = {
             depends_on: [],
             extends: [],
@@ -604,8 +677,30 @@ export class MemoriaStorage {
         }
     }
     // ---------------------------------------------------------------------------
+    // Bulk Read (for vault sync)
+    // ---------------------------------------------------------------------------
+    getAllMemories() {
+        const stmt = this.db.prepare(`SELECT * FROM memories ORDER BY created_at DESC`);
+        return stmt.all().map(row => this.rowToMemory(row));
+    }
+    getAllLinks() {
+        const stmt = this.db.prepare(`SELECT * FROM memory_links ORDER BY created_at DESC`);
+        return stmt.all().map(row => this.rowToMemoryLink(row));
+    }
+    // ---------------------------------------------------------------------------
     // Utility
     // ---------------------------------------------------------------------------
+    rowToMemoryLink(row) {
+        return {
+            link_id: row.link_id,
+            from_memory_id: row.from_memory_id,
+            to_memory_id: row.to_memory_id,
+            link_type: row.link_type,
+            created_at: row.created_at,
+            valid_from: row.valid_from,
+            invalidated_at: row.invalidated_at ?? null,
+        };
+    }
     rowToMemory(row, accessed_at, access_count) {
         return {
             id: row.id,
@@ -621,6 +716,15 @@ export class MemoriaStorage {
             metadata: row.metadata ? JSON.parse(row.metadata) : undefined,
         };
     }
+    /**
+     * Expose the underlying SQLite database handle.
+     * Used by TranscriptIngester to create its auxiliary tables
+     * (transcript_ingest_state, transcript_dedup) in the same database file
+     * without opening a second connection.
+     */
+    getInternalDb() {
+        return this.db;
+    }
     close() {
         this.db.close();
     }

package/dist/tools/gaia/storage.js.map

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package/dist/tools/gaia/transcript-ingester.d.ts

@@ -0,0 +1,81 @@
+/**
+ * Transcript Ingester
+ *
+ * Walks ~/.claude/projects/**‌/*.jsonl, parses Claude Code conversation
+ * transcripts, and indexes human + assistant prose into Gaia's FTS5 store.
+ *
+ * Design:
+ * - Streams JSONL line-by-line (never loads full file into memory)
+ * - Incremental: tracks last-ingested byte offset per file in SQLite
+ * - Dedupes on (file_path, message_index) to survive re-runs
+ * - Skips noise: tool_result, system messages, sidechain, pure tool_use-only turns
+ */
+import Database from 'better-sqlite3';
+import type { MemoriaStorage } from './storage.js';
+export interface IngestOptions {
+    /** Root directory to walk. Defaults to ~/.claude/projects */
+    rootDir?: string;
+    /** Substring to match against project slug (e.g. "foundation") */
+    projectFilter?: string;
+    /** Only ingest messages newer than this ISO timestamp */
+    since?: string;
+    /** Walk and report without writing to DB */
+    dryRun?: boolean;
+}
+export interface IngestStats {
+    filesFound: number;
+    filesSkipped: number;
+    messagesIngested: number;
+    messagesSkipped: number;
+    bytesProcessed: number;
+    projectSlugs: string[];
+    dateRange: {
+        earliest: string | null;
+        latest: string | null;
+    };
+    parseErrors: number;
+    parseErrorSamples: string[];
+    dryRun: boolean;
+}
+/** A single parsed message ready for indexing */
+export interface ParsedMessage {
+    sessionId: string;
+    messageIndex: number;
+    timestamp: number;
+    role: 'user' | 'assistant';
+    text: string;
+    projectSlug: string;
+    cwd: string | null;
+    filePath: string;
+    lineOffset: number;
+}
+export declare const INGEST_STATE_DDL = "\n  CREATE TABLE IF NOT EXISTS transcript_ingest_state (\n    file_path TEXT NOT NULL PRIMARY KEY,\n    last_byte_offset INTEGER NOT NULL DEFAULT 0,\n    last_ingested_at INTEGER NOT NULL,\n    messages_ingested INTEGER NOT NULL DEFAULT 0\n  );\n\n  CREATE TABLE IF NOT EXISTS transcript_dedup (\n    file_path TEXT NOT NULL,\n    message_index INTEGER NOT NULL,\n    memory_id TEXT NOT NULL,\n    PRIMARY KEY (file_path, message_index)\n  );\n\n  CREATE INDEX IF NOT EXISTS idx_dedup_file ON transcript_dedup(file_path);\n";
+export declare class TranscriptIngester {
+    private db;
+    private memoria;
+    constructor(memoriaDb: Database.Database, memoria: MemoriaStorage);
+    private ensureSchema;
+    ingest(options?: IngestOptions): Promise<IngestStats>;
+    private collectJsonlFiles;
+    private processFile;
+    private streamFile;
+    private updateIngestState;
+    private updateDateRange;
+    /** Returns ingest state rows for testing incremental behavior */
+    getIngestState(): Array<{
+        file_path: string;
+        last_byte_offset: number;
+        messages_ingested: number;
+    }>;
+    /** Returns dedup row count for a given file */
+    getDedupCount(filePath: string): number;
+    /** Nano-id helper (re-exported so tests can use it) */
+    static generateId(): string;
+}
+/**
+ * MemoriaStorage keeps its `db` private. We expose it through this module
+ * by accepting the db instance directly (tests pass an in-memory DB;
+ * the MCP tool passes the real db through getInternalDb).
+ */
+export declare function createIngester(db: Database.Database, memoria: MemoriaStorage): TranscriptIngester;
+//# sourceMappingURL=transcript-ingester.d.ts.map

package/dist/tools/gaia/transcript-ingester.d.ts.map

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