@s_s/harmonia 1.1.1 → 1.3.0

package/build/core/steps.d.ts

@@ -1,18 +1,19 @@
 /**
- * Step state management — manages <data_dir>/<project_name>/steps.json
+ * Step state management — manages <context_dir>/steps.json
  *
  * Tracks which sequential steps have been completed for each document,
  * supporting the P3 Sequential mode feature.
+ * All public functions accept an optional contextDir parameter.
  */
 import type { DocStepState } from './types.js';
 /**
- * Read the steps state for a project.
+ * Read the steps state for a project context.
  */
-export declare function readSteps(projectName: string): Promise<Record<string, DocStepState>>;
+export declare function readSteps(projectName: string, iteration: number, contextDir?: string): Promise<Record<string, DocStepState>>;
 /**
  * Get the step state for a specific document.
  */
-export declare function getDocStepState(projectName: string, docId: string): Promise<DocStepState | null>;
+export declare function getDocStepState(projectName: string, iteration: number, docId: string, contextDir?: string): Promise<DocStepState | null>;
 /**
  * Get the set of completed step IDs for a document.
  */
@@ -23,12 +24,12 @@ export declare function getCompletedStepIds(state: DocStepState | null): Set<str
  *
  * @returns The updated DocStepState
  */
-export declare function recordStepCompletion(projectName: string, docId: string, stepId: string, artifactPath: string, allStepIds: string[]): Promise<DocStepState>;
+export declare function recordStepCompletion(projectName: string, iteration: number, docId: string, stepId: string, artifactPath: string, allStepIds: string[], contextDir?: string): Promise<DocStepState>;
 /**
  * Mark a document as finalized (all steps completed + final doc written).
  */
-export declare function markFinalized(projectName: string, docId: string): Promise<DocStepState>;
+export declare function markFinalized(projectName: string, iteration: number, docId: string, contextDir?: string): Promise<DocStepState>;
 /**
  * Check if a document's sequential process is finalized.
  */
-export declare function isDocFinalized(projectName: string, docId: string): Promise<boolean>;
+export declare function isDocFinalized(projectName: string, iteration: number, docId: string, contextDir?: string): Promise<boolean>;

package/build/core/steps.js

@@ -1,22 +1,24 @@
 /**
- * Step state management — manages <data_dir>/<project_name>/steps.json
+ * Step state management — manages <context_dir>/steps.json
  *
  * Tracks which sequential steps have been completed for each document,
  * supporting the P3 Sequential mode feature.
+ * All public functions accept an optional contextDir parameter.
  */
 import { readFile, writeFile, mkdir } from 'node:fs/promises';
 import { join, dirname } from 'node:path';
-import { getProjectDataDir } from './registry.js';
+import { getIterationDir } from './registry.js';
 const STEPS_FILE = 'steps.json';
-function stepsPath(projectName) {
-    return join(getProjectDataDir(projectName), STEPS_FILE);
+function stepsPath(projectName, iteration, contextDir) {
+    const base = contextDir ?? getIterationDir(projectName, iteration);
+    return join(base, STEPS_FILE);
 }
 /**
- * Read the steps state for a project.
+ * Read the steps state for a project context.
  */
-export async function readSteps(projectName) {
+export async function readSteps(projectName, iteration, contextDir) {
     try {
-        const content = await readFile(stepsPath(projectName), 'utf-8');
+        const content = await readFile(stepsPath(projectName, iteration, contextDir), 'utf-8');
         const data = JSON.parse(content);
         return data.docs ?? {};
     }
@@ -27,8 +29,8 @@ export async function readSteps(projectName) {
 /**
  * Write steps state to disk.
  */
-async function writeSteps(projectName, docs) {
-    const filePath = stepsPath(projectName);
+async function writeSteps(projectName, iteration, docs, contextDir) {
+    const filePath = stepsPath(projectName, iteration, contextDir);
     await mkdir(dirname(filePath), { recursive: true });
     const data = { docs };
     await writeFile(filePath, JSON.stringify(data, null, 2) + '\n', 'utf-8');
@@ -36,8 +38,8 @@ async function writeSteps(projectName, docs) {
 /**
  * Get the step state for a specific document.
  */
-export async function getDocStepState(projectName, docId) {
-    const docs = await readSteps(projectName);
+export async function getDocStepState(projectName, iteration, docId, contextDir) {
+    const docs = await readSteps(projectName, iteration, contextDir);
     return docs[docId] ?? null;
 }
 /**
@@ -54,8 +56,8 @@ export function getCompletedStepIds(state) {
  *
  * @returns The updated DocStepState
  */
-export async function recordStepCompletion(projectName, docId, stepId, artifactPath, allStepIds) {
-    const docs = await readSteps(projectName);
+export async function recordStepCompletion(projectName, iteration, docId, stepId, artifactPath, allStepIds, contextDir) {
+    const docs = await readSteps(projectName, iteration, contextDir);
     let state = docs[docId];
     if (!state) {
         state = {
@@ -86,28 +88,28 @@ export async function recordStepCompletion(projectName, docId, stepId, artifactP
     };
     state.completedSteps.push(record);
     docs[docId] = state;
-    await writeSteps(projectName, docs);
+    await writeSteps(projectName, iteration, docs, contextDir);
     return state;
 }
 /**
  * Mark a document as finalized (all steps completed + final doc written).
  */
-export async function markFinalized(projectName, docId) {
-    const docs = await readSteps(projectName);
+export async function markFinalized(projectName, iteration, docId, contextDir) {
+    const docs = await readSteps(projectName, iteration, contextDir);
     const state = docs[docId];
     if (!state) {
         throw new Error(`No step state found for document "${docId}"`);
     }
     state.finalized = true;
     state.finalizedAt = new Date().toISOString();
-    await writeSteps(projectName, docs);
+    await writeSteps(projectName, iteration, docs, contextDir);
     return state;
 }
 /**
  * Check if a document's sequential process is finalized.
  */
-export async function isDocFinalized(projectName, docId) {
-    const state = await getDocStepState(projectName, docId);
+export async function isDocFinalized(projectName, iteration, docId, contextDir) {
+    const state = await getDocStepState(projectName, iteration, docId, contextDir);
     return state?.finalized ?? false;
 }
 //# sourceMappingURL=steps.js.map

package/build/core/steps.js.map

@@ -1 +1 @@
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package/build/core/types.d.ts

@@ -116,8 +116,9 @@ export interface LoadedWorkflow {
     definition: WorkflowDefinition;
     roles: Record<string, RoleDefinition>;
 }
-export type PhaseStatus = 'pending' | 'in_progress' | 'completed' | 'blocked' | 'review';
+export type PhaseStatus = 'pending' | 'in_progress' | 'completed' | 'blocked' | 'review' | 'skipped';
 export type ProjectScale = 'small' | 'medium' | 'large';
+export type ContextType = 'iteration' | 'patch';
 export interface PhaseState {
     id: string;
     status: PhaseStatus;
@@ -132,6 +133,10 @@ export interface ProjectState {
     projectDir: string;
     /** Workflow name, e.g. "dev" */
     workflow: string;
+    /** Context type: "iteration" for full iterations, "patch" for lightweight patches */
+    type: ContextType;
+    /** Iteration or patch number this state belongs to */
+    iteration: number;
     /** Project scale determined by PM (null until set via project_set_scale) */
     scale: ProjectScale | null;
     /** Current phase id */
@@ -256,3 +261,29 @@ export interface DocStepState {
     /** Finalized at timestamp */
     finalizedAt?: string;
 }
+export type IssueStatus = 'open' | 'closed';
+export type IssueSource = 'test' | 'user-feedback';
+export interface IssueResolvedBy {
+    type: ContextType;
+    number: number;
+}
+export interface Issue {
+    /** Auto-generated ID, e.g. "issue-1" */
+    id: string;
+    /** Short title */
+    title: string;
+    /** Detailed description */
+    description: string;
+    /** Where this issue was discovered */
+    source: IssueSource;
+    /** Which iteration this issue relates to */
+    iteration: number;
+    /** How this issue was resolved (set when closing) */
+    resolvedBy?: IssueResolvedBy;
+    /** Current status */
+    status: IssueStatus;
+    /** When this issue was created */
+    createdAt: string;
+    /** When this issue was closed */
+    closedAt?: string;
+}

package/build/index.js

@@ -28,14 +28,39 @@ if (subcommand === 'setup') {
         process.exit(1);
     }
 }
+else if (subcommand === 'unregister') {
+    // CLI mode — unregister a project from the registry
+    const args = process.argv.slice(3);
+    const keepData = args.includes('--keep-data');
+    const projectName = args.find((a) => !a.startsWith('--'));
+    if (!projectName) {
+        console.error('Usage: harmonia unregister <project_name> [--keep-data]');
+        process.exit(1);
+    }
+    const { getProject, unregisterProject } = await import('./core/registry.js');
+    const entry = await getProject(projectName);
+    if (!entry) {
+        console.error(`Project "${projectName}" not found in registry.`);
+        process.exit(1);
+    }
+    await unregisterProject(projectName, keepData);
+    if (keepData) {
+        console.log(`Project "${projectName}" unregistered. Data files were kept.`);
+    }
+    else {
+        console.log(`Project "${projectName}" unregistered. Data directory has been deleted.`);
+    }
+}
 else if (subcommand === '--help' || subcommand === '-h') {
     console.log(`
 Harmonia — Multi-agent orchestration MCP server
 
 Usage:
-  harmonia                Start MCP stdio server
-  harmonia setup          Inject PM prompt + install hooks in current directory
-  harmonia --help         Show this help message
+  harmonia                    Start MCP stdio server
+  harmonia setup              Inject PM prompt + install hooks in current directory
+  harmonia unregister <name>  Remove project from registry and delete data (default)
+  harmonia unregister <name> --keep-data  Remove from registry but keep data files
+  harmonia --help             Show this help message
 
 Setup options:
   --agent <type>           opencode | claude-code | codex | openclaw (default: auto-detect)
@@ -62,6 +87,7 @@ else {
     const { StdioServerTransport } = await import('@modelcontextprotocol/sdk/server/stdio.js');
     const { getGlobalDir } = await import('./core/registry.js');
     const { registerProjectInit } = await import('./tools/project-init.js');
+    const { registerIterationStart } = await import('./tools/iteration-start.js');
     const { registerSetScale } = await import('./tools/set-scale.js');
     const { registerGetRolePrompt } = await import('./tools/get-role-prompt.js');
     const { registerUpdatePhase } = await import('./tools/update-phase.js');
@@ -71,6 +97,8 @@ else {
     const { registerOverrideTools } = await import('./tools/override-tools.js');
     const { registerDispatchRole } = await import('./tools/dispatch-role.js');
     const { registerReportDispatch } = await import('./tools/report-dispatch.js');
+    const { registerPatchStart } = await import('./tools/patch-start.js');
+    const { registerIssueTools } = await import('./tools/issue-tools.js');
     // Custom workflows directory: <data_dir>/.workflows
     const CUSTOM_WORKFLOWS_DIR = join(getGlobalDir(), '.workflows');
     const server = new McpServer({
@@ -79,6 +107,7 @@ else {
     });
     // Register all tools
     registerProjectInit(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
+    registerIterationStart(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
     registerSetScale(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
     registerGetRolePrompt(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
     registerUpdatePhase(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
@@ -88,6 +117,8 @@ else {
     registerOverrideTools(server);
     registerDispatchRole(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
     registerReportDispatch(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
+    registerPatchStart(server, BUILTIN_WORKFLOWS_DIR, CUSTOM_WORKFLOWS_DIR);
+    registerIssueTools(server);
     // Connect via stdio
     const transport = new StdioServerTransport();
     await server.connect(transport);

package/build/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAEA;;;;;;;;;GASG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEnD,MAAM,UAAU,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAClD,MAAM,SAAS,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;AAEtC,iEAAiE;AACjE,MAAM,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC,CAAC;AAE1E,MAAM,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAEnC,IAAI,UAAU,KAAK,OAAO,EAAE,CAAC;IACzB,wCAAwC;IACxC,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;IACpE,IAAI,CAAC;QACD,MAAM,IAAI,GAAG,cAAc,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QACnD,MAAM,QAAQ,CAAC,IAAI,CAAC,CAAC;IACzB,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACX,OAAO,CAAC,KAAK,CAAC,UAAU,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QAC5E,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;AACL,CAAC;KAAM,IAAI,UAAU,KAAK,QAAQ,IAAI,UAAU,KAAK,IAAI,EAAE,CAAC;IACxD,OAAO,CAAC,GAAG,CAAC;;;;;;;;;;CAUf,CAAC,CAAC;AACH,CAAC;KAAM,IAAI,UAAU,IAAI,UAAU,KAAK,WAAW,IAAI,UAAU,KAAK,IAAI,EAAE,CAAC;IACzE,OAAO,CAAC,KAAK,CAAC,oBAAoB,UAAU,oCAAoC,CAAC,CAAC;IAClF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AACpB,CAAC;KAAM,IAAI,UAAU,KAAK,WAAW,IAAI,UAAU,KAAK,IAAI,EAAE,CAAC;IAC3D,iCAAiC;IACjC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,kBAAkB,CAAC,CAAC;IACtD,IAAI,CAAC;QACD,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,QAAQ,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,cAAc,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC;QACvF,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IAC7B,CAAC;IAAC,MAAM,CAAC;QACL,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;IAC3B,CAAC;AACL,CAAC;KAAM,CAAC;IACJ,iCAAiC;IACjC,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,MAAM,CAAC,yCAAyC,CAAC,CAAC;IAC9E,MAAM,EAAE,oBAAoB,EAAE,GAAG,MAAM,MAAM,CAAC,2CAA2C,CAAC,CAAC;IAC3F,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CAAC,oBAAoB,CAAC,CAAC;IAE5D,MAAM,EAAE,mBAAmB,EAAE,GAAG,MAAM,MAAM,CAAC,yBAAyB,CAAC,CAAC;IACxE,MAAM,EAAE,gBAAgB,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAClE,MAAM,EAAE,qBAAqB,EAAE,GAAG,MAAM,MAAM,CAAC,4BAA4B,CAAC,CAAC;IAC7E,MAAM,EAAE,mBAAmB,EAAE,GAAG,MAAM,MAAM,CAAC,yBAAyB,CAAC,CAAC;IACxE,MAAM,EAAE,gBAAgB,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAClE,MAAM,EAAE,wBAAwB,EAAE,GAAG,MAAM,MAAM,CAAC,+BAA+B,CAAC,CAAC;IACnF,MAAM,EAAE,kBAAkB,EAAE,GAAG,MAAM,MAAM,CAAC,wBAAwB,CAAC,CAAC;IACtE,MAAM,EAAE,qBAAqB,EAAE,GAAG,MAAM,MAAM,CAAC,2BAA2B,CAAC,CAAC;IAC5E,MAAM,EAAE,oBAAoB,EAAE,GAAG,MAAM,MAAM,CAAC,0BAA0B,CAAC,CAAC;IAC1E,MAAM,EAAE,sBAAsB,EAAE,GAAG,MAAM,MAAM,CAAC,4BAA4B,CAAC,CAAC;IAE9E,oDAAoD;IACpD,MAAM,oBAAoB,GAAG,IAAI,CAAC,YAAY,EAAE,EAAE,YAAY,CAAC,CAAC;IAEhE,MAAM,MAAM,GAAG,IAAI,SAAS,CAAC;QACzB,IAAI,EAAE,UAAU;QAChB,OAAO,EAAE,OAAO;KACnB,CAAC,CAAC;IAEH,qBAAqB;IACrB,mBAAmB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACzE,gBAAgB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACtE,qBAAqB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC3E,mBAAmB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACzE,gBAAgB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACtE,wBAAwB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC9E,kBAAkB,CAAC,MAAM,CAAC,CAAC;IAC3B,qBAAqB,CAAC,MAAM,CAAC,CAAC;IAC9B,oBAAoB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC1E,sBAAsB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAE5E,oBAAoB;IACpB,MAAM,SAAS,GAAG,IAAI,oBAAoB,EAAE,CAAC;IAC7C,MAAM,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;AACpC,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAEA;;;;;;;;;GASG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEnD,MAAM,UAAU,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAClD,MAAM,SAAS,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;AAEtC,iEAAiE;AACjE,MAAM,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC,CAAC;AAE1E,MAAM,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAEnC,IAAI,UAAU,KAAK,OAAO,EAAE,CAAC;IACzB,wCAAwC;IACxC,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;IACpE,IAAI,CAAC;QACD,MAAM,IAAI,GAAG,cAAc,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QACnD,MAAM,QAAQ,CAAC,IAAI,CAAC,CAAC;IACzB,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACX,OAAO,CAAC,KAAK,CAAC,UAAU,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QAC5E,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;AACL,CAAC;KAAM,IAAI,UAAU,KAAK,YAAY,EAAE,CAAC;IACrC,oDAAoD;IACpD,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IACnC,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;IAC9C,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC;IAC1D,IAAI,CAAC,WAAW,EAAE,CAAC;QACf,OAAO,CAAC,KAAK,CAAC,yDAAyD,CAAC,CAAC;QACzE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;IACD,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,GAAG,MAAM,MAAM,CAAC,oBAAoB,CAAC,CAAC;IAC7E,MAAM,KAAK,GAAG,MAAM,UAAU,CAAC,WAAW,CAAC,CAAC;IAC5C,IAAI,CAAC,KAAK,EAAE,CAAC;QACT,OAAO,CAAC,KAAK,CAAC,YAAY,WAAW,0BAA0B,CAAC,CAAC;QACjE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;IACD,MAAM,iBAAiB,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC;IAC/C,IAAI,QAAQ,EAAE,CAAC;QACX,OAAO,CAAC,GAAG,CAAC,YAAY,WAAW,uCAAuC,CAAC,CAAC;IAChF,CAAC;SAAM,CAAC;QACJ,OAAO,CAAC,GAAG,CAAC,YAAY,WAAW,kDAAkD,CAAC,CAAC;IAC3F,CAAC;AACL,CAAC;KAAM,IAAI,UAAU,KAAK,QAAQ,IAAI,UAAU,KAAK,IAAI,EAAE,CAAC;IACxD,OAAO,CAAC,GAAG,CAAC;;;;;;;;;;;;CAYf,CAAC,CAAC;AACH,CAAC;KAAM,IAAI,UAAU,IAAI,UAAU,KAAK,WAAW,IAAI,UAAU,KAAK,IAAI,EAAE,CAAC;IACzE,OAAO,CAAC,KAAK,CAAC,oBAAoB,UAAU,oCAAoC,CAAC,CAAC;IAClF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AACpB,CAAC;KAAM,IAAI,UAAU,KAAK,WAAW,IAAI,UAAU,KAAK,IAAI,EAAE,CAAC;IAC3D,iCAAiC;IACjC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,kBAAkB,CAAC,CAAC;IACtD,IAAI,CAAC;QACD,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,QAAQ,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,cAAc,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC;QACvF,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IAC7B,CAAC;IAAC,MAAM,CAAC;QACL,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;IAC3B,CAAC;AACL,CAAC;KAAM,CAAC;IACJ,iCAAiC;IACjC,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,MAAM,CAAC,yCAAyC,CAAC,CAAC;IAC9E,MAAM,EAAE,oBAAoB,EAAE,GAAG,MAAM,MAAM,CAAC,2CAA2C,CAAC,CAAC;IAC3F,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CAAC,oBAAoB,CAAC,CAAC;IAE5D,MAAM,EAAE,mBAAmB,EAAE,GAAG,MAAM,MAAM,CAAC,yBAAyB,CAAC,CAAC;IACxE,MAAM,EAAE,sBAAsB,EAAE,GAAG,MAAM,MAAM,CAAC,4BAA4B,CAAC,CAAC;IAC9E,MAAM,EAAE,gBAAgB,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAClE,MAAM,EAAE,qBAAqB,EAAE,GAAG,MAAM,MAAM,CAAC,4BAA4B,CAAC,CAAC;IAC7E,MAAM,EAAE,mBAAmB,EAAE,GAAG,MAAM,MAAM,CAAC,yBAAyB,CAAC,CAAC;IACxE,MAAM,EAAE,gBAAgB,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAClE,MAAM,EAAE,wBAAwB,EAAE,GAAG,MAAM,MAAM,CAAC,+BAA+B,CAAC,CAAC;IACnF,MAAM,EAAE,kBAAkB,EAAE,GAAG,MAAM,MAAM,CAAC,wBAAwB,CAAC,CAAC;IACtE,MAAM,EAAE,qBAAqB,EAAE,GAAG,MAAM,MAAM,CAAC,2BAA2B,CAAC,CAAC;IAC5E,MAAM,EAAE,oBAAoB,EAAE,GAAG,MAAM,MAAM,CAAC,0BAA0B,CAAC,CAAC;IAC1E,MAAM,EAAE,sBAAsB,EAAE,GAAG,MAAM,MAAM,CAAC,4BAA4B,CAAC,CAAC;IAC9E,MAAM,EAAE,kBAAkB,EAAE,GAAG,MAAM,MAAM,CAAC,wBAAwB,CAAC,CAAC;IACtE,MAAM,EAAE,kBAAkB,EAAE,GAAG,MAAM,MAAM,CAAC,wBAAwB,CAAC,CAAC;IAEtE,oDAAoD;IACpD,MAAM,oBAAoB,GAAG,IAAI,CAAC,YAAY,EAAE,EAAE,YAAY,CAAC,CAAC;IAEhE,MAAM,MAAM,GAAG,IAAI,SAAS,CAAC;QACzB,IAAI,EAAE,UAAU;QAChB,OAAO,EAAE,OAAO;KACnB,CAAC,CAAC;IAEH,qBAAqB;IACrB,mBAAmB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACzE,sBAAsB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC5E,gBAAgB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACtE,qBAAqB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC3E,mBAAmB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACzE,gBAAgB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACtE,wBAAwB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC9E,kBAAkB,CAAC,MAAM,CAAC,CAAC;IAC3B,qBAAqB,CAAC,MAAM,CAAC,CAAC;IAC9B,oBAAoB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC1E,sBAAsB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IAC5E,kBAAkB,CAAC,MAAM,EAAE,qBAAqB,EAAE,oBAAoB,CAAC,CAAC;IACxE,kBAAkB,CAAC,MAAM,CAAC,CAAC;IAE3B,oBAAoB;IACpB,MAAM,SAAS,GAAG,IAAI,oBAAoB,EAAE,CAAC;IAC7C,MAAM,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;AACpC,CAAC"}

package/build/setup/templates.js

@@ -24,8 +24,15 @@ Harmonia is managing the project workflow. You are the central coordinator — t
 
 1. **Check for existing projects**: Call \`project_status()\` (no params) to list registered projects
 2. **If resuming**: Call \`project_status(project_name)\` to see current state and next steps
-3. **If new project**: Talk to user, then call \`project_init(project_name, project_dir)\` to register
-4. **After PRD approved**: Call \`project_set_scale(project_name, scale)\` to set project scale
+3. **If new project**: Talk to user, then call \`project_init(project_name, project_dir)\` to register, followed by \`iteration_start(project_name)\` to begin the first iteration
+4. **If starting a new iteration on an existing project**: Call \`iteration_start(project_name)\` — this creates a fresh iteration with clean phases and documents
+5. **After PRD approved**: Call \`project_set_scale(project_name, scale)\` to set project scale
+
+### Project Init vs Iteration Start
+
+- **\`project_init\`** — One-time registration. Creates the project entry in the registry. Does NOT create any iteration data.
+- **\`iteration_start\`** — Creates a new iteration (iter-1, iter-2, ...) with fresh state, phases, and docs directory. Must be called after \`project_init\` before any other tools will work.
+- For existing projects that have completed all phases, \`project_status\` will suggest calling \`iteration_start\` to begin the next iteration.
 
 ### Your Responsibilities
 
@@ -155,6 +162,75 @@ When \`doc_write\` returns "REVIEW REQUIRED":
 1. **Always check status first** — start each session with \`project_status()\` to understand where you are
 2. **Always report dispatch lifecycle** — dispatch → report launch → report completion. Never skip dispatch_report.
 3. **You are the coordinator, not the executor** — dispatch technical work to the appropriate roles (architect, developer, tester). Harmonia enforces this via hooks and guards.
-4. **Always check scale** — use \`project_status(project_name)\` to check scale before deciding which documents to produce`;
+4. **Always check scale** — use \`project_status(project_name)\` to check scale before deciding which documents to produce
+
+### Patch Workflow
+
+Patches are lightweight fix cycles for bug fixes and small improvements. Unlike full iterations, patches skip the clarify and design phases, and scale is fixed to small.
+
+#### When to Use Patches
+
+- Bug fixes found during testing or user feedback
+- Small improvements that don't need full requirements/design
+- Issues tracked via \`issue_create\`
+
+#### Starting a Patch
+
+\`\`\`
+patch_start(project_name, description="fix login timeout", issue_id="issue-1")
+\`\`\`
+
+This:
+- Creates a \`patch-N/\` directory
+- Skips clarify and design phases
+- Sets scale to small
+- Switches the active context to the patch
+
+#### Patch Phases
+
+Patches start directly at the develop phase:
+1. **develop** — Fix the issue, write code
+2. **test** — Verify the fix
+3. **deliver** — Close out the patch
+
+#### After Patch Completion
+
+- Close the related issue: \`issue_update(project_name, issue_id, status="closed", resolved_by_type="patch", resolved_by_number=N)\`
+- Start another patch or switch back to iteration with \`iteration_start\`
+
+### Issue Management
+
+Issues track problems discovered during testing or from user feedback. They exist at the project level (not per-iteration).
+
+#### Creating Issues
+
+\`\`\`
+issue_create(project_name, title="Login timeout on slow networks", description="...", source="test", iteration=1)
+\`\`\`
+
+Sources: \`test\` (found during testing) or \`user-feedback\` (reported by users).
+
+#### Tracking Issues
+
+- \`issue_list(project_name)\` — View all issues
+- \`issue_list(project_name, status="open")\` — View open issues only
+- \`issue_update(project_name, issue_id, status="closed", resolved_by_type="patch", resolved_by_number=1)\` — Close with resolution
+
+#### Workflow Integration
+
+- \`project_status\` shows open issue count and suggests \`patch_start\` when there are unresolved issues
+- When testing reveals bugs, use \`issue_create\` to track them
+- Use \`patch_start\` with \`issue_id\` to link patches to issues
+
+### Cross-Context Document Access
+
+Use the optional \`context\` parameter on \`doc_read\` and \`doc_list\` to access documents from any iteration or patch:
+
+\`\`\`
+doc_read(project_name, "prd", context="iter-1")    // Read PRD from iteration 1
+doc_list(project_name, context="patch-2")           // List docs from patch 2
+\`\`\`
+
+This is useful when working in a patch but needing to reference the original iteration's documents.`;
 }
 //# sourceMappingURL=templates.js.map

package/build/setup/templates.js.map

@@ -1 +1 @@
-{"version":3,"file":"templates.js","sourceRoot":"","sources":["../../src/setup/templates.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH;;;;;GAKG;AACH,MAAM,UAAU,gBAAgB;IAC5B,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;2HA4IgH,CAAC;AAC5H,CAAC"}
+{"version":3,"file":"templates.js","sourceRoot":"","sources":["../../src/setup/templates.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH;;;;;GAKG;AACH,MAAM,UAAU,gBAAgB;IAC5B,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;oGAwNyF,CAAC;AACrG,CAAC"}

package/build/tools/approve-doc.js

@@ -4,6 +4,7 @@
  */
 import { z } from 'zod';
 import { resolveReview, getPendingReviews } from '../core/reviews.js';
+import { resolveActive, isError } from './utils.js';
 export function registerApproveDoc(server) {
     server.tool('doc_approve', 'Approve or reject a document pending review. Call this after the user has reviewed the document and confirmed (or requested changes).', {
         project_name: z.string().describe('Project name'),
@@ -12,8 +13,11 @@ export function registerApproveDoc(server) {
         comment: z.string().optional().describe('Optional comment — user feedback or reason for rejection'),
     }, async ({ project_name, doc_id, approved, comment }) => {
         try {
+            const ctx = await resolveActive(project_name);
+            if (isError(ctx))
+                return ctx;
             const status = approved ? 'approved' : 'rejected';
-            const review = await resolveReview(project_name, doc_id, status, comment);
+            const review = await resolveReview(project_name, ctx.number, doc_id, status, comment);
             if (approved) {
                 return {
                     content: [
@@ -54,7 +58,10 @@ export function registerApproveDoc(server) {
     server.tool('review_list', 'List all documents currently pending user review.', {
         project_name: z.string().describe('Project name'),
     }, async ({ project_name }) => {
-        const pending = await getPendingReviews(project_name);
+        const ctx = await resolveActive(project_name);
+        if (isError(ctx))
+            return ctx;
+        const pending = await getPendingReviews(project_name, ctx.number);
         if (pending.length === 0) {
             return {
                 content: [

package/build/tools/approve-doc.js.map

@@ -1 +1 @@
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+{"version":3,"file":"approve-doc.js","sourceRoot":"","sources":["../../src/tools/approve-doc.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,aAAa,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACtE,OAAO,EAAE,aAAa,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAEpD,MAAM,UAAU,kBAAkB,CAAC,MAAiB;IAChD,MAAM,CAAC,IAAI,CACP,aAAa,EACb,uIAAuI,EACvI;QACI,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,cAAc,CAAC;QACjD,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;QAC5D,QAAQ,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC,oDAAoD,CAAC;QACpF,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0DAA0D,CAAC;KACtG,EACD,KAAK,EAAE,EAAE,YAAY,EAAE,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,EAAE,EAAE;QAClD,IAAI,CAAC;YACD,MAAM,GAAG,GAAG,MAAM,aAAa,CAAC,YAAY,CAAC,CAAC;YAC9C,IAAI,OAAO,CAAC,GAAG,CAAC;gBAAE,OAAO,GAAG,CAAC;YAE7B,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC;YAClD,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC,YAAY,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;YAEtF,IAAI,QAAQ,EAAE,CAAC;gBACX,OAAO;oBACH,OAAO,EAAE;wBACL;4BACI,IAAI,EAAE,MAAe;4BACrB,IAAI,EAAE,aAAa,MAAM,gDAAgD;yBAC5E;qBACJ;iBACJ,CAAC;YACN,CAAC;iBAAM,CAAC;gBACJ,OAAO;oBACH,OAAO,EAAE;wBACL;4BACI,IAAI,EAAE,MAAe;4BACrB,IAAI,EAAE;gCACF,aAAa,MAAM,aAAa;gCAChC,OAAO,CAAC,CAAC,CAAC,kBAAkB,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE;gCAC1C,4EAA4E;6BAC/E,CAAC,IAAI,CAAC,IAAI,CAAC;yBACf;qBACJ;iBACJ,CAAC;YACN,CAAC;QACL,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACX,OAAO;gBACH,OAAO,EAAE;oBACL;wBACI,IAAI,EAAE,MAAe;wBACrB,IAAI,EAAE,UAAU,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE;qBACrE;iBACJ;gBACD,OAAO,EAAE,IAAI;aAChB,CAAC;QACN,CAAC;IACL,CAAC,CACJ,CAAC;IAEF,MAAM,CAAC,IAAI,CACP,aAAa,EACb,mDAAmD,EACnD;QACI,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,cAAc,CAAC;KACpD,EACD,KAAK,EAAE,EAAE,YAAY,EAAE,EAAE,EAAE;QACvB,MAAM,GAAG,GAAG,MAAM,aAAa,CAAC,YAAY,CAAC,CAAC;QAC9C,IAAI,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,GAAG,CAAC;QAE7B,MAAM,OAAO,GAAG,MAAM,iBAAiB,CAAC,YAAY,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;QAElE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO;gBACH,OAAO,EAAE;oBACL;wBACI,IAAI,EAAE,MAAe;wBACrB,IAAI,EAAE,8BAA8B;qBACvC;iBACJ;aACJ,CAAC;QACN,CAAC;QAED,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,KAAK,gBAAgB,CAAC,CAAC,WAAW,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAEzF,OAAO;YACH,OAAO,EAAE;gBACL;oBACI,IAAI,EAAE,MAAe;oBACrB,IAAI,EAAE,8BAA8B,IAAI,EAAE;iBAC7C;aACJ;SACJ,CAAC;IACN,CAAC,CACJ,CAAC;AACN,CAAC"}

package/build/tools/dispatch-role.js

@@ -18,6 +18,7 @@ import { readState } from '../core/state.js';
 import { readDoc } from '../core/docs.js';
 import { getMergedOverrides, resolveRoleConfig } from '../core/overrides.js';
 import { createDispatch, findIdleSession } from '../core/dispatch.js';
+import { resolveActive, isError } from './utils.js';
 /**
  * Build override instructions to inject into the role prompt.
  */
@@ -94,8 +95,11 @@ export function registerDispatchRole(server, builtinDir, customDir) {
             .describe("Document IDs to include as input for the team member. If not specified, automatically uses the current phase's input docs."),
     }, async ({ project_name, role, task_brief, input_doc_ids }) => {
         try {
+            const ctx = await resolveActive(project_name);
+            if (isError(ctx))
+                return ctx;
             // Load project state and workflow
-            const state = await readState(project_name);
+            const state = await readState(project_name, ctx.number, ctx.dir);
             const wf = await loadWorkflow(builtinDir, customDir, state.workflow);
             // Validate role exists
             const roleDef = wf.roles[role];
@@ -154,7 +158,7 @@ export function registerDispatchRole(server, builtinDir, customDir) {
                 if (docDef?.external)
                     continue; // external outputs not stored as docs
                 try {
-                    inputDocs[docId] = await readDoc(project_name, docId);
+                    inputDocs[docId] = await readDoc(project_name, ctx.number, docId, ctx.dir);
                 }
                 catch {
                     missingDocs.push(docId);
@@ -165,9 +169,9 @@ export function registerDispatchRole(server, builtinDir, customDir) {
             // Resolve expected outputs for this dispatch
             const expectedOutputs = resolveExpectedOutputs(currentPhase, wf.definition, state.scale);
             // Check for reusable idle session
-            const idleSession = await findIdleSession(project_name, role);
+            const idleSession = await findIdleSession(project_name, ctx.number, role, ctx.dir);
             // Create dispatch record
-            const dispatch = await createDispatch(project_name, role, task_brief, expectedOutputs, idleSession?.id);
+            const dispatch = await createDispatch(project_name, ctx.number, role, task_brief, expectedOutputs, idleSession?.id, ctx.dir);
             // Build session guidance
             const sessionGuidance = buildSessionGuidance(idleSession, roleDef.frontmatter.session, roleConfig.agent);
             // Build human-readable summary for the agent

package/build/tools/dispatch-role.js.map

@@ -1 +1 @@
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