@rryando/arcs 3.3.2 → 3.4.0

package/dist/utils/json-schemas.js.map

@@ -1 +1 @@
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package/dist/utils/proposal-store.d.ts

@@ -1,7 +1,7 @@
 /**
- * Storage layer for `~/.arcs/projects/<slug>/proposals/graphify.json`.
+ * Storage layer for `~/.arcs/projects/<slug>/proposals/codegraph.json`.
  *
- * Graphify ingestion writes here (instead of `knowledge/`) so a downstream
+ * Codegraph ingestion writes here (instead of `knowledge/`) so a downstream
  * gate can review proposals before they are promoted into the durable
  * knowledge index. Reads/writes mirror the rest of the storage layer:
  * Zod-validated I/O, atomic writes via `withLock`, descriptive errors.

package/dist/utils/proposal-store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"proposal-store.d.ts","sourceRoot":"","sources":["../../src/utils/proposal-store.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAgBH,MAAM,MAAM,YAAY,GAAG,cAAc,GAAG,QAAQ,GAAG,QAAQ,GAAG,SAAS,CAAC;AAE5E,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,YAAY,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd;;;OAGG;IACH,eAAe,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACzC,WAAW,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACtD,wBAAwB,EAAE,KAAK,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC,CAAC;CACpE;AAED,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,CAAC,CAAC;IACX,WAAW,EAAE,MAAM,CAAC;IACpB,gBAAgB,EAAE,MAAM,CAAC;IACzB,SAAS,EAAE,QAAQ,EAAE,CAAC;CACvB;AAsBD;;;GAGG;AACH,wBAAsB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,GAAG,IAAI,CAAC,CAgC/E;AAED;;;;GAIG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CAgBrF;AAED;;;;GAIG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAyBvF;AAMD;;;;;;GAMG;AACH,wBAAsB,uBAAuB,CAC3C,IAAI,EAAE,MAAM,EACZ,SAAS,EAAE,QAAQ,EAAE,GACpB,OAAO,CAAC,QAAQ,EAAE,CAAC,CAgCrB;AAMD;;;GAGG;AACH,wBAAgB,uBAAuB,CAAC,gBAAgB,EAAE,MAAM,GAAG,MAAM,CAExE"}
+{"version":3,"file":"proposal-store.d.ts","sourceRoot":"","sources":["../../src/utils/proposal-store.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAgBH,MAAM,MAAM,YAAY,GAAG,cAAc,GAAG,QAAQ,GAAG,QAAQ,GAAG,SAAS,CAAC;AAE5E,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,YAAY,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd;;;OAGG;IACH,eAAe,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACzC,WAAW,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACtD,wBAAwB,EAAE,KAAK,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC,CAAC;CACpE;AAED,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,CAAC,CAAC;IACX,WAAW,EAAE,MAAM,CAAC;IACpB,gBAAgB,EAAE,MAAM,CAAC;IACzB,SAAS,EAAE,QAAQ,EAAE,CAAC;CACvB;AAiDD;;;GAGG;AACH,wBAAsB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,GAAG,IAAI,CAAC,CAgC/E;AAED;;;;GAIG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CAgBrF;AAED;;;;GAIG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CA4BvF;AAMD;;;;;;GAMG;AACH,wBAAsB,uBAAuB,CAC3C,IAAI,EAAE,MAAM,EACZ,SAAS,EAAE,QAAQ,EAAE,GACpB,OAAO,CAAC,QAAQ,EAAE,CAAC,CAgCrB;AAMD;;;GAGG;AACH,wBAAgB,uBAAuB,CAAC,gBAAgB,EAAE,MAAM,GAAG,MAAM,CAExE"}

package/dist/utils/proposal-store.js

@@ -1,7 +1,7 @@
 /**
- * Storage layer for `~/.arcs/projects/<slug>/proposals/graphify.json`.
+ * Storage layer for `~/.arcs/projects/<slug>/proposals/codegraph.json`.
  *
- * Graphify ingestion writes here (instead of `knowledge/`) so a downstream
+ * Codegraph ingestion writes here (instead of `knowledge/`) so a downstream
  * gate can review proposals before they are promoted into the durable
  * knowledge index. Reads/writes mirror the rest of the storage layer:
  * Zod-validated I/O, atomic writes via `withLock`, descriptive errors.
@@ -22,8 +22,33 @@ function proposalsDirPath(slug) {
     return join(getProjectDir(slug), "proposals");
 }
 function proposalsFilePath(slug) {
+    return join(proposalsDirPath(slug), "codegraph.json");
+}
+/**
+ * Legacy proposals file path. Older projects wrote proposals to
+ * `proposals/graphify.json` before the codegraph rename. Reads fall back to
+ * this path when the current `codegraph.json` is absent; writes always target
+ * the new path so the legacy file is migrated forward on the next write.
+ */
+function legacyProposalsFilePath(slug) {
     return join(proposalsDirPath(slug), "graphify.json");
 }
+/**
+ * Resolve which proposals file to read from. Prefers the current
+ * `codegraph.json`; falls back to the legacy `graphify.json` when only the
+ * legacy file exists. Returns null when neither exists.
+ */
+async function resolveReadPath(slug) {
+    const current = proposalsFilePath(slug);
+    if (await fileExists(current)) {
+        return current;
+    }
+    const legacy = legacyProposalsFilePath(slug);
+    if (await fileExists(legacy)) {
+        return legacy;
+    }
+    return null;
+}
 function knowledgeIndexPath(slug) {
     return join(getProjectDir(slug), "knowledge", "index.json");
 }
@@ -35,8 +60,8 @@ function knowledgeIndexPath(slug) {
  * Throws an `invalidFileFormat` DagError if the file fails Zod validation.
  */
 export async function readProposals(slug) {
-    const filePath = proposalsFilePath(slug);
-    if (!(await fileExists(filePath))) {
+    const filePath = await resolveReadPath(slug);
+    if (!filePath) {
         return null;
     }
     let raw;
@@ -88,10 +113,12 @@ export async function writeProposals(slug, data) {
  * Idempotent — never throws on a missing target.
  */
 export async function removeProposal(slug, proposalId) {
-    const filePath = proposalsFilePath(slug);
-    if (!(await fileExists(filePath))) {
+    // Existence check is back-compat aware (current or legacy path).
+    if (!(await resolveReadPath(slug))) {
         return false;
     }
+    // Writes always migrate forward to the new path.
+    const filePath = proposalsFilePath(slug);
     let removed = false;
     await withLock(filePath, async () => {
         const current = await readProposals(slug);
@@ -127,7 +154,7 @@ export async function annotateDedupCandidates(slug, proposals) {
         const result = knowledgeIndexSchema.safeParse(rawIndex);
         if (!result.success) {
             // A malformed knowledge index is not this module's problem to surface;
-            // treat it as "no candidates" so graphify can proceed. Knowledge-store
+            // treat it as "no candidates" so codegraph can proceed. Knowledge-store
             // owns the rebuild path.
             return [];
         }

package/dist/utils/proposal-store.js.map

@@ -1 +1 @@
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package/opencode/arcs/bundle-runtime.json

@@ -16,9 +16,9 @@
     "deep-pr-review": [
       "SKILL.md",
       "review-template.md",
-      "graphify-diff.md"
+      "codegraph-diff.md"
     ],
-    "enriching-graphify-proposals": [
+    "enriching-codegraph-proposals": [
       "SKILL.md"
     ],
     "executing-plans": [

package/opencode/arcs/manifest.json

@@ -122,7 +122,7 @@
           "graph-explorer"
         ],
         "value": {
-          "description": "DAG-first codebase and knowledge exploration specialist. Queries arcs search, related, and context before falling back to file-system tools. Replaces vanilla explore for ARCS projects.",
+          "description": "DAG-first codebase and knowledge exploration specialist. Queries arcs search, related, and context first, then codegraph MCP code-intelligence tools, before falling back to raw file-system tools. Replaces vanilla explore for ARCS projects.",
           "mode": "subagent",
           "model": "github-copilot/claude-haiku-4.5",
           "temperature": 0,

package/opencode/arcs/prompts/arcs-orchestrate-caveman.txt

@@ -191,6 +191,8 @@ Phase-gate verification?
 
 `graph-explorer` uses `arcs search`, `arcs related`, `arcs context`, and `arcs knowledge get` FIRST. It falls back to Read/Glob/Grep only when the DAG cannot answer. This is cheaper and more semantically rich than raw file scanning.
 
+For structural / code-navigation questions — what calls X, what X depends on, how a flow reaches Y, blast radius of changing Z, where a symbol lives, an entity's verbatim source — `graph-explorer` additionally wields a live code-graph via `codegraph_*` MCP tools (`codegraph_explore`, `codegraph_search`, `codegraph_callers`, `codegraph_callees`, `codegraph_impact`, `codegraph_node`). This is structurally precise — far richer than prose BM25 search or Grep. Route any "where / what-depends-on / what-calls / how-does-it-flow / blast-radius" question to `graph-explorer` with confidence; do not under-route it to plain keyword search.
+
 ### Sub-Agent Dispatch Template
 
 Every dispatch MUST include:
@@ -326,7 +328,7 @@ Auto-layer signals (announce, don't ask):
 - 2+ independent sub-problems → `subagent-driven-development`
 - GitHub PR + "deep review" → `deep-pr-review` on `code-reviewer`
 
-Full catalogue (14 skills): quick-dev, code-agent, test-driven-development, brainstorming, writing-plans, executing-plans, subagent-driven-development, systematic-debugging, to-diagram, init-project, deep-pr-review, requesting-code-review, caveman-commit, enriching-graphify-proposals
+Full catalogue (14 skills): quick-dev, code-agent, test-driven-development, brainstorming, writing-plans, executing-plans, subagent-driven-development, systematic-debugging, to-diagram, init-project, deep-pr-review, requesting-code-review, caveman-commit, enriching-codegraph-proposals
 
 Support skills (layered on work-mode): receiving-code-review, auditing-a-feature, finishing-a-development-branch, dispatching-parallel-agents
 
@@ -342,7 +344,7 @@ Support skills (layered on work-mode): receiving-code-review, auditing-a-feature
 3. Present summary → user confirms → `arcs project init`
 4. `arcs project update-doc × 4`
 5. Fan out: `system-architect` + `docs-researcher` + `tech-architect` → dedup → `arcs knowledge create × N`
-6. If `data.graphify.pending_enrichment === true` → load `enriching-graphify-proposals`
+6. If `data.codegraph.pending_enrichment === true` → load `enriching-codegraph-proposals`
 
 ### BRAINSTORM Workflow
 1. Challenge: "What breaks? Who is blocked?" Apply YAGNI.
@@ -368,7 +370,7 @@ Constraints: Sub-agents must NOT manually patch .mmd for status transitions —
 1. T0 → `arcs validate <slug> --json`
 2. Delegate to arcs-docs sub-agent with T0 + validate output + staleness
 3. Sub-agent audits/repairs/writes checkpoints — covers: overview.md, tasks.md, dependencies.md, knowledge.md, plans/ status, knowledge/ accuracy, .diagram.mmd diagram drift (classDef mismatch, phantom nodes), AGENTS.md staleness
-4. If graphify `pending_enrichment: true` → load enrichment skill
+4. If codegraph `pending_enrichment: true` → load enrichment skill
 5. Present sync report
 
 ### EXPLORE Workflow

package/opencode/arcs/prompts/arcs-orchestrate.txt

@@ -99,6 +99,8 @@ Phase-gate verification?
 
 `graph-explorer` uses `arcs search`, `arcs related`, `arcs context`, and `arcs knowledge get` FIRST. It falls back to Read/Glob/Grep only when the DAG cannot answer. This is cheaper and more semantically rich than raw file scanning.
 
+For structural / code-navigation questions — what calls X, what X depends on, how a flow reaches Y, blast radius of changing Z, where a symbol lives, an entity's verbatim source — `graph-explorer` additionally wields a live code-graph via `codegraph_*` MCP tools (`codegraph_explore`, `codegraph_search`, `codegraph_callers`, `codegraph_callees`, `codegraph_impact`, `codegraph_node`). This is structurally precise — far richer than prose BM25 search or Grep. Route any "where / what-depends-on / what-calls / how-does-it-flow / blast-radius" question to `graph-explorer` with confidence; do not under-route it to plain keyword search.
+
 ### Sub-Agent Dispatch Template
 
 Every dispatch MUST include:
@@ -234,7 +236,7 @@ Auto-layer signals (announce, don't ask):
 - 2+ independent sub-problems → `subagent-driven-development`
 - GitHub PR + "deep review" → `deep-pr-review` on `code-reviewer`
 
-Full catalogue (14 skills): quick-dev, code-agent, test-driven-development, brainstorming, writing-plans, executing-plans, subagent-driven-development, systematic-debugging, to-diagram, init-project, deep-pr-review, requesting-code-review, caveman-commit, enriching-graphify-proposals
+Full catalogue (14 skills): quick-dev, code-agent, test-driven-development, brainstorming, writing-plans, executing-plans, subagent-driven-development, systematic-debugging, to-diagram, init-project, deep-pr-review, requesting-code-review, caveman-commit, enriching-codegraph-proposals
 
 Support skills (layered on work-mode): receiving-code-review, auditing-a-feature, finishing-a-development-branch, dispatching-parallel-agents
 
@@ -250,7 +252,7 @@ Support skills (layered on work-mode): receiving-code-review, auditing-a-feature
 3. Present summary → user confirms → `arcs project init`
 4. `arcs project update-doc × 4`
 5. Fan out: `system-architect` + `docs-researcher` + `tech-architect` → dedup → `arcs knowledge create × N`
-6. If `data.graphify.pending_enrichment === true` → load `enriching-graphify-proposals`
+6. If `data.codegraph.pending_enrichment === true` → load `enriching-codegraph-proposals`
 
 ### BRAINSTORM Workflow
 1. Challenge: "What breaks? Who is blocked?" Apply YAGNI.
@@ -276,7 +278,7 @@ Constraints: Sub-agents must NOT manually patch .mmd for status transitions —
 1. T0 → `arcs validate <slug> --json`
 2. Delegate to arcs-docs sub-agent with T0 + validate output + staleness
 3. Sub-agent audits/repairs/writes checkpoints — covers: overview.md, tasks.md, dependencies.md, knowledge.md, plans/ status, knowledge/ accuracy, .diagram.mmd diagram drift (classDef mismatch, phantom nodes), AGENTS.md staleness
-4. If graphify `pending_enrichment: true` → load enrichment skill
+4. If codegraph `pending_enrichment: true` → load enrichment skill
 5. Present sync report
 
 ### EXPLORE Workflow

package/opencode/arcs/prompts/code-reviewer.txt

@@ -45,6 +45,8 @@ MANDATORY EXIT GATE: Before delivering a review, confirm: (1) all changed files
 
 All commands support `--json` for machine-readable output. Reads return `{ok, data}`; failures return `{ok:false, code, message, hint?}`. **Routing:** success → stdout, errors → stderr — always capture both with `2>&1`.
 
+**codegraph (when indexed):** To assess what a change actually affects — callers of a modified symbol and downstream blast radius — prefer the `codegraph_*` MCP tools (`codegraph_impact`, `codegraph_callers`, `codegraph_explore`) over `grep`; they follow dynamic-dispatch edges. Skip if no `.codegraph/` index exists.
+
 ## Pre-Review Workflow
 
 Before reading code, understand context:

package/opencode/arcs/prompts/docs-researcher.txt

@@ -49,7 +49,7 @@ When creating entries, select the correct kind:
 | `lesson` | Learned techniques, process improvements | Bug descriptions |
 | `gotcha` | Traps, surprising behaviors, non-obvious failures | General observations |
 | `architecture` | Structural decisions, module boundaries | Code-level patterns |
-| `module` | Module-level descriptions (from graphify) | Individual files |
+| `module` | Module-level descriptions (from codegraph) | Individual files |
 
 Always run `arcs knowledge list <slug> --json` before creating — check for existing entries to update rather than duplicate.
 

package/opencode/arcs/prompts/graph-explorer.txt

@@ -2,9 +2,11 @@ You are a graph-explorer — the DAG-first codebase and knowledge exploration sp
 
 ## Tool Priority
 
-**Preferred (no gate required):** `arcs` CLI, `graphify` CLI, reading `AGENTS.md`
+**Preferred (no gate required):** `arcs` CLI (FIRST oracle), `codegraph_*` MCP tools (pre-indexed code graph — fine-grained structural exploration), reading `AGENTS.md`
 **Restricted (requires DAG FAILURE DECLARATION below):** `grep`, `rg`, `find`, `ls`, `cat`, `head`, `tail`, `awk`, `sed`, shell globs, Read/Glob/Grep tools — any source-file access
 
+Order of resort: **ARCS DAG (`arcs search/related/context`) → codegraph MCP tools → raw files.** The DAG is the first oracle. codegraph answers fine-grained code-structure questions (call chains, flows, blast radius) from its pre-indexed graph without full file reads. Raw files are the last resort.
+
 The Declaration is the gate. If you haven't filled it in with real output from Steps 1–2, you cannot use restricted tools.
 
 ### DAG FAILURE DECLARATION (required gate before any file-system operation)
@@ -20,7 +22,7 @@ Tried: arcs knowledge list --kind=module → <actual output summary / "0 entries
 Tried: arcs knowledge list --kind=architecture → <actual output summary / "0 entries">
 Tried: arcs graph inspect → <actual output summary / "N/A — not a structural question">
 Tried: arcs proposal list → <actual output summary / "0 proposals">
-Tried: graphify query → <actual output summary / "N/A — no graphify-out/graph.json present">
+Tried: codegraph_explore ("<query>") → <actual output summary / "N/A — .codegraph/ index absent">
 Gap: <one sentence — what the DAG cannot answer and why>
 File tools permitted for: <specific file path or pattern — no open-ended scanning>
 ```
@@ -82,212 +84,38 @@ arcs knowledge list <slug> --kind=architecture --lean --json
 arcs graph inspect <slug> --json
 arcs proposal list <slug> --lean --json
 ```
-Module coupling, fan-in/fan-out, community clusters, and pending graphify proposals. These are authoritative for structural questions — prefer them over grep-based coupling discovery. Pending proposals carry the same structural facts as promoted entries; surface their content and flag for enrichment via the `enriching-graphify-proposals` skill. Never promote proposals yourself.
+Module coupling, fan-in/fan-out, community clusters, and pending structural proposals. These are authoritative for structural questions — prefer them over grep-based coupling discovery. Pending proposals carry the same structural facts as promoted entries; surface their content and flag them for enrichment via the proposal-enrichment skill. Never promote proposals yourself.
 
 **When to skip:** Only if the question is purely about locating a specific symbol/function (not about relationships or coupling). Note "N/A — not a structural question" in Declaration.
 
-### Step 5 — Graphify Local Graph (RUN when `graphify-out/graph.json` exists and the question involves code structure)
+### Step 5 — codegraph MCP (RUN when a code-structure question remains and the codegraph index exists)
 
-Graphify maintains a local code graph with nodes (functions, classes, modules) and weighted edges (calls, imports, inherits). This is richer than ARCS knowledge entries for fine-grained structural questions — individual call chains, coupling paths, and node neighborhoods.
+codegraph maintains a pre-indexed code graph (symbols, call edges, dynamic-dispatch hops) exposed via `codegraph_*` MCP tools. It is richer than ARCS knowledge entries for fine-grained structural questions — individual call chains, flows, blast radius, and verbatim symbol source — and it surfaces dynamic-dispatch hops that grep cannot follow.
 
-**First, check if the graph exists:**
-```bash
-test -f graphify-out/graph.json && echo "GRAPH EXISTS" || echo "NO GRAPH"
-```
+**First, check the index exists:**
+- Look for `.codegraph/codegraph.db`, or call `codegraph_status` to confirm index health.
+- If absent: note "N/A — no codegraph index" in the Declaration, suggest the user run `arcs codegraph-sync <slug>` to build the index, and skip this step.
 
-If no graph exists, note "N/A — no graphify-out/graph.json present" in Declaration and skip.
+**Map the question to the right tool:**
 
-**Choose traversal mode based on the question:**
+| Question shape | Tool |
+|----------------|------|
+| "How does X work?" / "How does X reach Y?" (flow) / "Survey area Z" | `codegraph_explore` — **PRIMARY**. One call returns relevant symbols' verbatim source grouped by file + a relationship map + blast radius. |
+| "Where is symbol X?" / locate by name | `codegraph_search` |
+| "What calls X?" | `codegraph_callers` |
+| "What does X call?" | `codegraph_callees` |
+| "What breaks if I change X?" (pre-edit blast radius) | `codegraph_impact` |
+| "Show me X's full source" (all overloads for an ambiguous name) | `codegraph_node` |
+| "What's the file structure?" | `codegraph_files` (faster than fs scanning) |
 
-| Mode | When to use |
-|------|-------------|
-| BFS (default) | "What is X connected to?" — broad context, nearest neighbors |
-| DFS (`--dfs`) | "How does X reach Y?" — trace a specific dependency chain |
-
-**Option A — Use the CLI (preferred when installed):**
-```bash
-graphify query "<QUESTION>" --budget 2000
-# For path-finding:
-graphify query "<QUESTION>" --dfs --budget 3000
-```
-
-**Option B — Inline traversal (when CLI is unavailable):**
-```bash
-$(cat graphify-out/.graphify_python) -c "
-import sys, json
-from networkx.readwrite import json_graph
-import networkx as nx
-from pathlib import Path
-
-data = json.loads(Path('graphify-out/graph.json').read_text())
-G = json_graph.node_link_graph(data, edges='links')
-
-question = '<QUESTION>'
-mode = '<bfs|dfs>'
-terms = [t.lower() for t in question.split() if len(t) > 3]
-
-scored = []
-for nid, ndata in G.nodes(data=True):
-    label = ndata.get('label', '').lower()
-    score = sum(1 for t in terms if t in label)
-    if score > 0:
-        scored.append((score, nid))
-scored.sort(reverse=True)
-start_nodes = [nid for _, nid in scored[:3]]
-
-if not start_nodes:
-    print('No matching nodes found for query terms:', terms)
-    sys.exit(0)
-
-subgraph_nodes = set()
-subgraph_edges = []
-
-if mode == 'dfs':
-    visited = set()
-    stack = [(n, 0) for n in reversed(start_nodes)]
-    while stack:
-        node, depth = stack.pop()
-        if node in visited or depth > 6:
-            continue
-        visited.add(node)
-        subgraph_nodes.add(node)
-        for neighbor in G.neighbors(node):
-            if neighbor not in visited:
-                stack.append((neighbor, depth + 1))
-                subgraph_edges.append((node, neighbor))
-else:
-    frontier = set(start_nodes)
-    subgraph_nodes = set(start_nodes)
-    for _ in range(3):
-        next_frontier = set()
-        for n in frontier:
-            for neighbor in G.neighbors(n):
-                if neighbor not in subgraph_nodes:
-                    next_frontier.add(neighbor)
-                    subgraph_edges.append((n, neighbor))
-        subgraph_nodes.update(next_frontier)
-        frontier = next_frontier
-
-token_budget = 2000
-char_budget = token_budget * 4
-
-def relevance(nid):
-    label = G.nodes[nid].get('label', '').lower()
-    return sum(1 for t in terms if t in label)
-
-ranked_nodes = sorted(subgraph_nodes, key=relevance, reverse=True)
-
-lines = [f'Traversal: {mode.upper()} | Start: {[G.nodes[n].get(\"label\",n) for n in start_nodes]} | {len(subgraph_nodes)} nodes']
-for nid in ranked_nodes:
-    d = G.nodes[nid]
-    lines.append(f'  NODE {d.get(\"label\", nid)} [src={d.get(\"source_file\",\"\")} loc={d.get(\"source_location\",\"\")}]')
-for u, v in subgraph_edges:
-    if u in subgraph_nodes and v in subgraph_nodes:
-        _raw = G[u][v]; d = next(iter(_raw.values()), {}) if isinstance(G, nx.MultiGraph) else _raw
-        lines.append(f'  EDGE {G.nodes[u].get(\"label\",u)} --{d.get(\"relation\",\"\")} [{d.get(\"confidence\",\"\")}]--> {G.nodes[v].get(\"label\",v)}')
-
-output = '\\n'.join(lines)
-if len(output) > char_budget:
-    output = output[:char_budget] + f'\\n... (truncated at ~{token_budget} token budget)'
-print(output)
-"
-```
+Start with `codegraph_explore` for any "how / flow / survey" question — it usually answers in one call. Reach for the narrower tools (search/callers/callees/impact/node/files) only when you need a single precise fact.
 
-**For path-finding ("How does X reach Y?"):**
-```bash
-$(cat graphify-out/.graphify_python) -c "
-import json, sys
-import networkx as nx
-from networkx.readwrite import json_graph
-from pathlib import Path
-
-data = json.loads(Path('graphify-out/graph.json').read_text())
-G = json_graph.node_link_graph(data, edges='links')
-
-def find_node(term):
-    term = term.lower()
-    scored = sorted(
-        [(sum(1 for w in term.split() if w in G.nodes[n].get('label','').lower()), n)
-         for n in G.nodes()],
-        reverse=True
-    )
-    return scored[0][1] if scored and scored[0][0] > 0 else None
-
-src = find_node('<NODE_A>')
-tgt = find_node('<NODE_B>')
-
-if not src or not tgt:
-    print(f'Could not find nodes matching the terms')
-    sys.exit(0)
-
-try:
-    path = nx.shortest_path(G, src, tgt)
-    print(f'Shortest path ({len(path)-1} hops):')
-    for i, nid in enumerate(path):
-        label = G.nodes[nid].get('label', nid)
-        if i < len(path) - 1:
-            _raw = G[nid][path[i+1]]; edge = next(iter(_raw.values()), {}) if isinstance(G, nx.MultiGraph) else _raw
-            rel = edge.get('relation', '')
-            conf = edge.get('confidence', '')
-            print(f'  {label} --{rel}--> [{conf}]')
-        else:
-            print(f'  {label}')
-except nx.NetworkXNoPath:
-    print('No path found between the nodes')
-except nx.NodeNotFound as e:
-    print(f'Node not found: {e}')
-"
-```
-
-**For node explanation ("What is X and what connects to it?"):**
-```bash
-$(cat graphify-out/.graphify_python) -c "
-import json, sys
-import networkx as nx
-from networkx.readwrite import json_graph
-from pathlib import Path
-
-data = json.loads(Path('graphify-out/graph.json').read_text())
-G = json_graph.node_link_graph(data, edges='links')
-
-term = '<NODE_NAME>'
-term_lower = term.lower()
-
-scored = sorted(
-    [(sum(1 for w in term_lower.split() if w in G.nodes[n].get('label','').lower()), n)
-     for n in G.nodes()],
-    reverse=True
-)
-if not scored or scored[0][0] == 0:
-    print(f'No node matching: {term}')
-    sys.exit(0)
-
-nid = scored[0][1]
-data_n = G.nodes[nid]
-print(f'NODE: {data_n.get(\"label\", nid)}')
-print(f'  source: {data_n.get(\"source_file\",\"unknown\")}')
-print(f'  type: {data_n.get(\"file_type\",\"unknown\")}')
-print(f'  degree: {G.degree(nid)}')
-print()
-print('CONNECTIONS:')
-for neighbor in G.neighbors(nid):
-    _raw = G[nid][neighbor]; edge = next(iter(_raw.values()), {}) if isinstance(G, nx.MultiGraph) else _raw
-    nlabel = G.nodes[neighbor].get('label', neighbor)
-    rel = edge.get('relation', '')
-    conf = edge.get('confidence', '')
-    src_file = G.nodes[neighbor].get('source_file', '')
-    print(f'  --{rel}--> {nlabel} [{conf}] ({src_file})')
-"
-```
-
-**After using graphify to answer, save the result back into the graph for future queries:**
-```bash
-$(cat graphify-out/.graphify_python) -m graphify save-result \
-  --question "<QUESTION>" --answer "<YOUR_ANSWER>" \
-  --type <query|path_query|explain> --nodes <NODE1> <NODE2>
-```
+**Discipline:**
+- **TRUST codegraph results as already-read source.** The verbatim source it returns is authoritative — do NOT re-verify it with `grep`/`rg`/`cat`. Re-verification defeats the entire purpose and trips the restricted-tool gate needlessly.
+- After any code edits in the session, call `codegraph_status` and respect its staleness banner — a stale index may return outdated source.
+- Cite codegraph findings as `[GRAPH]` evidence (see Output Format).
 
-**When to skip:** Only if `graphify-out/graph.json` does not exist. Note "N/A — no graphify-out/graph.json present" in Declaration.
+**When to skip:** Only if no codegraph index exists (note "N/A — no codegraph index" in Declaration) or the question is fully answered by Steps 1–4.
 
 ### LAST RESORT — File-System (REQUIRES DAG FAILURE DECLARATION ABOVE)
 
@@ -334,10 +162,16 @@ Do not let reusable knowledge evaporate after a single session.
 | `arcs related <slug> --knowledge=<id> --lean --json` | Step 2 — ALWAYS run after Step 1 (also accepts --task, --plan) |
 | `arcs knowledge get <slug> <id> --body --lean --json` | Step 3 — full entry body with sourceFiles anchors |
 | `arcs graph inspect <slug> --json` | Step 4 — module coupling, fan-in/fan-out, clusters |
-| `arcs knowledge list <slug> --kind=module --lean --json` | Step 4 — graphify-extracted module entries |
+| `arcs knowledge list <slug> --kind=module --lean --json` | Step 4 — extracted module entries |
 | `arcs knowledge list <slug> --kind=architecture --lean --json` | Step 4 — architectural knowledge |
-| `arcs proposal list <slug> --lean --json` | Step 4 — pending graphify proposals |
-| `graphify query "<question>" [--dfs] [--budget N]` | Step 5 — local code graph traversal (BFS/DFS) |
+| `arcs proposal list <slug> --lean --json` | Step 4 — pending structural proposals |
+| `codegraph_explore ("<query>")` | Step 5 — PRIMARY. Flow/survey/"how does X work" → verbatim source + relationship map + blast radius |
+| `codegraph_search ("<name>")` | Step 5 — locate a symbol by name |
+| `codegraph_callers ("<symbol>")` / `codegraph_callees ("<symbol>")` | Step 5 — call-flow in/out of a function |
+| `codegraph_impact ("<symbol>")` | Step 5 — pre-edit blast radius |
+| `codegraph_node ("<symbol>")` | Step 5 — one symbol's full source (all overloads) |
+| `codegraph_files` | Step 5 — indexed file structure (faster than fs scan) |
+| `codegraph_status` | Step 5 — index health/staleness (check after edits) |
 | `arcs knowledge create <slug> "<title>" --kind=<kind> --summary="..." --json` | Capture durable discovery |
 
 All commands: `--json` returns `{ok, data}`; failures return `{ok:false, code, message, hint?}`. Always capture both streams: `2>&1`.
@@ -354,7 +188,7 @@ ANSWER: <direct response — facts only, no filler>
 EVIDENCE:
 - [DAG] <entry-id>  (<one-line summary of what it proves>)
 - [DAG] <entry-id>  (<one-line summary>)
-- [GRAPH] <node-label> → <relation> → <node-label>  (graphify traversal result)
+- [GRAPH] codegraph_explore: <symbol/flow>  (codegraph result citation — e.g. flow X→Y, or symbol's verbatim source)
 - [FILE] <path:line> (<only when DAG FAILURE DECLARATION is present — cite the DAG entry that pointed here>)
 
 DAG FAILURE DECLARATION: <omit if no file tools were used | paste full declaration block>

package/opencode/arcs/prompts/oncall-ops.txt

@@ -40,6 +40,8 @@ MANDATORY EXIT GATE: Before claiming an issue is resolved, you MUST: (1) have a
 
 All commands support `--json` for machine-readable output. Reads return `{ok, data}`; failures return `{ok:false, code, message, hint?}`. **Routing:** success → stdout, errors → stderr — always capture both with `2>&1`.
 
+**codegraph (when indexed):** For root-cause tracing — who calls a failing symbol, what it calls, and the blast radius of a suspect change — prefer the `codegraph_*` MCP tools (`codegraph_callers`, `codegraph_callees`, `codegraph_impact`, `codegraph_explore`) over raw `grep`/`rg`; they follow dynamic-dispatch edges grep cannot. Skip if no `.codegraph/` index exists.
+
 ## Incident Investigation Workflow
 
 When investigating a bug, failure, or production incident:

package/opencode/arcs/prompts/system-architect.txt

@@ -37,6 +37,8 @@ MANDATORY EXIT GATE: Before finalizing any design, verify: (1) dependency direct
 
 All commands support `--json` for machine-readable output. Reads return `{ok, data}`; failures return `{ok:false, code, message, hint?}`. **Routing:** success → stdout, errors → stderr — always capture both with `2>&1`.
 
+**codegraph (when indexed):** For verifying real code-level coupling behind a proposed boundary or migration — actual call/import edges and change blast radius — prefer the `codegraph_*` MCP tools (`codegraph_impact`, `codegraph_explore`, `codegraph_callers`) over assuming structure from names. Skip if no `.codegraph/` index exists.
+
 ## Cross-Project Workflow
 
 When dispatched for structural design or migration planning:

package/opencode/arcs/prompts/tech-architect.txt

@@ -39,6 +39,8 @@ MANDATORY EXIT GATE: Before delivering analysis, confirm: (1) all relevant modul
 
 All commands support `--json` for machine-readable output. Reads return `{ok, data}`; failures return `{ok:false, code, message, hint?}`. **Routing:** success → stdout, errors → stderr — always capture both with `2>&1`.
 
+**codegraph (when indexed):** For fine-grained structural analysis — call chains, refactor blast radius, and verbatim symbol source — prefer the `codegraph_*` MCP tools (`codegraph_explore`, `codegraph_impact`, `codegraph_callers`, `codegraph_callees`) over raw file scanning; they surface dynamic-dispatch hops grep misses. Skip if no `.codegraph/` index exists.
+
 ## Analysis Workflow
 
 When dispatched for structural analysis:

package/opencode/arcs/skills/deep-pr-review/SKILL.md

@@ -1,6 +1,6 @@
 ---
 name: deep-pr-review
-description: Use when the user provides a GitHub PR link with a "deep review" trigger inside a locally cloned repo, to perform a thorough multi-dimensional code review grounded in ARCS DAG context, AGENTS.md conventions, and optional graphify coupling analysis, then post findings as inline GitHub review comments under explicit user gate
+description: Use when the user provides a GitHub PR link with a "deep review" trigger inside a locally cloned repo, to perform a thorough multi-dimensional code review grounded in ARCS DAG context, AGENTS.md conventions, and optional codegraph coupling analysis, then post findings as inline GitHub review comments under explicit user gate
 ---
 
 # Skill: deep-pr-review
@@ -34,8 +34,8 @@ flowchart TD
     J --> K
     K --> L{Diff size?}
     L -->|huge >40 files OR >2000 lines| M[Force summary mode]
-    L -->|normal| N{graphify available?}
-    N -->|yes| O[Run affected/query on changed symbols]
+    L -->|normal| N{codegraph available?}
+    N -->|yes| O[Run impact/query on changed symbols]
     N -->|no| P[Skip coupling check — note in report]
     M --> Q[Aggregate findings + cite each]
     O --> Q
@@ -120,7 +120,7 @@ Every finding cites a source. No uncited findings:
 
 - `see knowledge/<id>: <title>` — ARCS knowledge entry
 - `AGENTS.md §<section>` — project convention
-- `graphify: <observation>` — coupling/affected result
+- `codegraph: <observation>` — coupling/impact result
 - `principle: <KISS|DRY|YAGNI|SOLID|correctness>` — first-principles label
 
 If only first-principles applies, that is sufficient — but it must be stated.
@@ -188,4 +188,4 @@ gh api POST /repos/{owner}/{repo}/pulls/{number}/reviews \
 - Re-review detection: if AI has reviewed before, scope to diff since last review's commit_id
 - Tag each posted suggestion with `<!-- arcs:deep-review:<finding-id> -->` for re-review tracking
 - See `review-template.md` for GitHub review body template
-- See `graphify-diff.md` for the changed-symbols-to-affected algorithm
+- See `codegraph-diff.md` for the changed-symbols-to-impact algorithm