@rotifer/playground 0.8.5 → 0.9.0

package/dist/commands/versions.js.map

@@ -1 +1 @@
-{"version":3,"file":"versions.js","sourceRoot":"","sources":["../../src/commands/versions.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,yCAAoC;AACpC,6DAA+C;AAC/C,oDAA8C;AAC9C,kDAAsD;AACtD,0EAAkE;AAErD,QAAA,eAAe,GAAG,IAAI,mBAAO,CAAC,UAAU,CAAC;KACnD,WAAW,CAAC,uCAAuC,CAAC;KACpD,QAAQ,CAAC,SAAS,EAAE,qBAAqB,CAAC;KAC1C,QAAQ,CAAC,aAAa,EAAE,WAAW,CAAC;KACpC,MAAM,CAAC,KAAK,EAAE,KAAa,EAAE,QAAgB,EAAE,EAAE;IAChD,IAAA,wCAAgB,EAAC,QAAQ,CAAC,CAAC;IAE3B,MAAM,CAAC,GAAG,OAAO,CAAC,OAAO,CAAC,6BAA6B,CAAC,CAAC;IACzD,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,IAAA,4BAAgB,EAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;QACzD,CAAC,CAAC,IAAI,EAAE,CAAC;QAET,OAAO,CAAC,YAAY,CAClB,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,EAAE,EAC7B,CAAC,IAAI,EAAE,EAAE;YACP,OAAO,CAAC,MAAM,CAAC,0BAA0B,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC;YAExE,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBAC/B,OAAO,CAAC,GAAG,EAAE,CAAC;gBACd,OAAO,CAAC,GAAG,CACT;oBACE,mCAAmC,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,QAAQ,GAAG;oBACjE,EAAE;oBACF,cAAC,CAAC,KAAK,CAAC,WAAW,CAAC;oBACpB,KAAK,cAAC,CAAC,MAAM,CAAC,kBAAkB,IAAI,CAAC,QAAQ,EAAE,CAAC,MAAM,cAAC,CAAC,KAAK,CAAC,sCAAsC,CAAC,EAAE;oBACvG,KAAK,cAAC,CAAC,MAAM,CAAC,wBAAwB,IAAI,CAAC,QAAQ,EAAE,CAAC,IAAI,cAAC,CAAC,KAAK,CAAC,yCAAyC,CAAC,EAAE;iBAC/G,EACD,EAAE,KAAK,EAAE,uBAAuB,EAAE,CACnC,CAAC;gBACF,OAAO;YACT,CAAC;YAED,OAAO,CAAC,GAAG,EAAE,CAAC;YACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC9C,MAAM,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gBAC3B,MAAM,QAAQ,GAAG,CAAC,KAAK,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;gBAChD,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,cAAC,CAAC,OAAO,CAAC,iBAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;gBAC/D,MAAM,YAAY,GAAG,QAAQ;oBAC3B,CAAC,CAAC,cAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC;oBAC3B,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC;gBAEd,OAAO,CAAC,GAAG,CAAC,KAAK,MAAM,IAAI,YAAY,KAAK,cAAC,CAAC,KAAK,CAAC,CAAC,CAAC,UAAU,CAAC,EAAE,CAAC,CAAC;gBAErE,IAAI,CAAC,CAAC,SAAS,EAAE,CAAC;oBAChB,OAAO,CAAC,GAAG,CAAC,KAAK,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;gBACpD,CAAC;gBAED,IAAI,CAAC,CAAC,mBAAmB,EAAE,CAAC;oBAC1B,OAAO,CAAC,GAAG,CAAC,KAAK,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,cAAC,CAAC,KAAK,CAAC,IAAI,GAAG,CAAC,CAAC,mBAAmB,CAAC,EAAE,CAAC,CAAC;gBAC9E,CAAC;gBAED,IAAI,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBACjC,OAAO,CAAC,GAAG,CAAC,KAAK,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;gBACnC,CAAC;YACH,CAAC;YAED,OAAO,CAAC,GAAG,EAAE,CAAC;YACd,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,oCAAoC,CAAC,CAAC;YAC1E,OAAO,CAAC,IAAI,CAAC,WAAW,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;QAC7E,CAAC,CACF,CAAC;IACJ,CAAC;IAAC,OAAO,GAAY,EAAE,CAAC;QACtB,CAAC,CAAC,IAAI,EAAE,CAAC;QACT,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,iCAAiC,CAAC;QACnF,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QACnB,OAAO,CAAC,IAAI,CAAC,uCAAuC,CAAC,CAAC;QACtD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;AACH,CAAC,CAAC,CAAC"}
+{"version":3,"file":"versions.js","sourceRoot":"","sources":["../../src/commands/versions.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,yCAAoC;AACpC,6DAA+C;AAC/C,oDAA8C;AAC9C,kDAAsD;AACtD,0EAAkE;AAClE,sDAAoD;AAEvC,QAAA,eAAe,GAAG,IAAI,mBAAO,CAAC,UAAU,CAAC;KACnD,WAAW,CAAC,uCAAuC,CAAC;KACpD,QAAQ,CAAC,gBAAgB,EAAE,2CAA2C,CAAC;KACvE,QAAQ,CAAC,aAAa,EAAE,iDAAiD,CAAC;KAC1E,MAAM,CAAC,KAAK,EAAE,UAAkB,EAAE,WAA+B,EAAE,EAAE;IACpE,qEAAqE;IACrE,kEAAkE;IAClE,iEAAiE;IACjE,gEAAgE;IAChE,gEAAgE;IAChE,kEAAkE;IAClE,IAAI,KAAa,CAAC;IAClB,IAAI,QAAgB,CAAC;IAErB,MAAM,GAAG,GAAG,IAAA,0BAAY,EAAC,UAAU,CAAC,CAAC;IACrC,IAAI,GAAG,CAAC,IAAI,KAAK,WAAW,EAAE,CAAC;QAC7B,IAAI,WAAW,EAAE,CAAC;YAChB,OAAO,CAAC,KAAK,CACX,sGAAsG,CACvG,CAAC;YACF,OAAO,CAAC,IAAI,CAAC,yBAAyB,GAAG,GAAG,CAAC,KAAK,GAAG,GAAG,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC;YACrE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAChB,OAAO;QACT,CAAC;QACD,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC;QAClB,QAAQ,GAAG,GAAG,CAAC,IAAI,CAAC;IACtB,CAAC;SAAM,IAAI,WAAW,EAAE,CAAC;QACvB,KAAK,GAAG,UAAU,CAAC;QACnB,QAAQ,GAAG,WAAW,CAAC;IACzB,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CACX,0FAA0F,CAC3F,CAAC;QACF,OAAO,CAAC,IAAI,CAAC,sCAAsC,CAAC,CAAC;QACrD,OAAO,CAAC,IAAI,CAAC,qCAAqC,CAAC,CAAC;QACpD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAChB,OAAO;IACT,CAAC;IAED,IAAA,wCAAgB,EAAC,QAAQ,CAAC,CAAC;IAE3B,MAAM,CAAC,GAAG,OAAO,CAAC,OAAO,CAAC,6BAA6B,CAAC,CAAC;IACzD,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,IAAA,4BAAgB,EAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;QACzD,CAAC,CAAC,IAAI,EAAE,CAAC;QAET,OAAO,CAAC,YAAY,CAClB,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,EAAE,EAC7B,CAAC,IAAI,EAAE,EAAE;YACP,OAAO,CAAC,MAAM,CAAC,0BAA0B,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC;YAExE,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBAC/B,OAAO,CAAC,GAAG,EAAE,CAAC;gBACd,OAAO,CAAC,GAAG,CACT;oBACE,mCAAmC,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,QAAQ,GAAG;oBACjE,EAAE;oBACF,cAAC,CAAC,KAAK,CAAC,WAAW,CAAC;oBACpB,KAAK,cAAC,CAAC,MAAM,CAAC,kBAAkB,IAAI,CAAC,QAAQ,EAAE,CAAC,MAAM,cAAC,CAAC,KAAK,CAAC,sCAAsC,CAAC,EAAE;oBACvG,KAAK,cAAC,CAAC,MAAM,CAAC,wBAAwB,IAAI,CAAC,QAAQ,EAAE,CAAC,IAAI,cAAC,CAAC,KAAK,CAAC,yCAAyC,CAAC,EAAE;iBAC/G,EACD,EAAE,KAAK,EAAE,uBAAuB,EAAE,CACnC,CAAC;gBACF,OAAO;YACT,CAAC;YAED,OAAO,CAAC,GAAG,EAAE,CAAC;YACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC9C,MAAM,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gBAC3B,MAAM,QAAQ,GAAG,CAAC,KAAK,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;gBAChD,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,cAAC,CAAC,OAAO,CAAC,iBAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;gBAC/D,MAAM,YAAY,GAAG,QAAQ;oBAC3B,CAAC,CAAC,cAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC;oBAC3B,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC;gBAEd,OAAO,CAAC,GAAG,CAAC,KAAK,MAAM,IAAI,YAAY,KAAK,cAAC,CAAC,KAAK,CAAC,CAAC,CAAC,UAAU,CAAC,EAAE,CAAC,CAAC;gBAErE,IAAI,CAAC,CAAC,SAAS,EAAE,CAAC;oBAChB,OAAO,CAAC,GAAG,CAAC,KAAK,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;gBACpD,CAAC;gBAED,IAAI,CAAC,CAAC,mBAAmB,EAAE,CAAC;oBAC1B,OAAO,CAAC,GAAG,CAAC,KAAK,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,cAAC,CAAC,KAAK,CAAC,IAAI,GAAG,CAAC,CAAC,mBAAmB,CAAC,EAAE,CAAC,CAAC;gBAC9E,CAAC;gBAED,IAAI,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBACjC,OAAO,CAAC,GAAG,CAAC,KAAK,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;gBACnC,CAAC;YACH,CAAC;YAED,OAAO,CAAC,GAAG,EAAE,CAAC;YACd,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,oCAAoC,CAAC,CAAC;YAC1E,OAAO,CAAC,IAAI,CAAC,WAAW,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;QAC7E,CAAC,CACF,CAAC;IACJ,CAAC;IAAC,OAAO,GAAY,EAAE,CAAC;QACtB,CAAC,CAAC,IAAI,EAAE,CAAC;QACT,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,iCAAiC,CAAC;QACnF,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QACnB,OAAO,CAAC,IAAI,CAAC,uCAAuC,CAAC,CAAC;QACtD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;AACH,CAAC,CAAC,CAAC"}

package/dist/commands/vg.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"vg.d.ts","sourceRoot":"","sources":["../../src/commands/vg.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAqEpC,eAAO,MAAM,SAAS,SA0ElB,CAAC"}
+{"version":3,"file":"vg.d.ts","sourceRoot":"","sources":["../../src/commands/vg.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAiDpC,eAAO,MAAM,SAAS,SA0ElB,CAAC"}

package/dist/commands/vg.js

@@ -39,7 +39,7 @@ const node_path_1 = require("node:path");
 const display = __importStar(require("../utils/display.js"));
 const palette_js_1 = require("../utils/palette.js");
 const index_js_1 = require("../scanner/index.js");
-const BADGE_WORKER_URL = "https://badge.rotifer.dev";
+const badge_js_1 = require("../cloud/badge.js");
 const GRADE_COLORS = {
     A: palette_js_1.c.success,
     B: palette_js_1.c.accentBright,
@@ -64,31 +64,13 @@ async function publishSafety(geneId, result, scannerVersion) {
         display.warn("ROTIFER_BADGE_TOKEN not set — skipping publish");
         return;
     }
-    const body = {
-        gene_id: geneId,
-        grade: result.grade,
-        scanner_version: scannerVersion,
-        findings_count: result.findings.length,
-    };
-    try {
-        const res = await fetch(`${BADGE_WORKER_URL}/safety/${geneId}`, {
-            method: "POST",
-            headers: {
-                "Content-Type": "application/json",
-                Authorization: `Bearer ${token}`,
-            },
-            body: JSON.stringify(body),
-        });
-        if (res.ok) {
-            display.success(`Safety grade ${result.grade} published to badge.rotifer.dev (self-reported)`);
-        }
-        else {
-            const err = await res.text();
-            display.warn(`Failed to publish safety grade: ${res.status} ${err}`);
-        }
+    const r = await (0, badge_js_1.uploadSafetyBadge)(geneId, result, scannerVersion, "self-reported", token);
+    if (r.ok) {
+        display.success(`Safety grade ${result.grade} published to badge.rotifer.dev (self-reported)`);
     }
-    catch (e) {
-        display.warn(`Failed to publish safety grade: ${e.message}`);
+    else {
+        const detail = r.status ? `${r.status} ${r.error ?? ""}` : (r.error ?? "");
+        display.warn(`Failed to publish safety grade: ${detail}`);
     }
 }
 exports.vgCommand = new commander_1.Command("vg")

package/dist/commands/vg.js.map

@@ -1 +1 @@
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package/dist/commands/whoami.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"whoami.d.ts","sourceRoot":"","sources":["../../src/commands/whoami.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAKpC,eAAO,MAAM,aAAa,SAgDtB,CAAC"}
+{"version":3,"file":"whoami.d.ts","sourceRoot":"","sources":["../../src/commands/whoami.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAKpC,eAAO,MAAM,aAAa,SAsDtB,CAAC"}

package/dist/commands/whoami.js

@@ -40,7 +40,13 @@ const palette_js_1 = require("../utils/palette.js");
 const auth_js_1 = require("../cloud/auth.js");
 exports.whoamiCommand = new commander_1.Command("whoami")
     .description("Show current authentication status")
-    .action(() => {
+    .action(async () => {
+    // Auto-refresh before reading so an expired access token doesn't make
+    // whoami report "Not logged in" when the refresh token is still valid.
+    // refreshTokenIfNeeded is silent on failure (the call below still sees
+    // null creds in the truly-logged-out case), so this is safe to await
+    // unconditionally — Issue #50 UX 4.
+    await (0, auth_js_1.refreshTokenIfNeeded)();
     const creds = (0, auth_js_1.loadCredentials)();
     if (!creds) {
         display.renderResult({ authenticated: false }, () => {

package/dist/commands/whoami.js.map

@@ -1 +1 @@
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+{"version":3,"file":"whoami.js","sourceRoot":"","sources":["../../src/commands/whoami.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,yCAAoC;AACpC,6DAA+C;AAC/C,oDAAwC;AACxC,8CAAyE;AAE5D,QAAA,aAAa,GAAG,IAAI,mBAAO,CAAC,QAAQ,CAAC;KAC/C,WAAW,CAAC,oCAAoC,CAAC;KACjD,MAAM,CAAC,KAAK,IAAI,EAAE;IACjB,sEAAsE;IACtE,uEAAuE;IACvE,uEAAuE;IACvE,qEAAqE;IACrE,oCAAoC;IACpC,MAAM,IAAA,8BAAoB,GAAE,CAAC;IAC7B,MAAM,KAAK,GAAG,IAAA,yBAAe,GAAE,CAAC;IAEhC,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,CAAC,YAAY,CAAC,EAAE,aAAa,EAAE,KAAK,EAAE,EAAE,GAAG,EAAE;YAClD,OAAO,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC;YAC9B,OAAO,CAAC,GAAG,EAAE,CAAC;YACd,OAAO,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC;YAC9B,OAAO,CAAC,IAAI,CAAC,uBAAuB,CAAC,CAAC;QACxC,CAAC,CAAC,CAAC;QACH,OAAO;IACT,CAAC;IAED,MAAM,WAAW,GAAG,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAClD,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,WAAW,GAAG,MAAM,CAAC,CAAC,CAAC;IACnE,MAAM,SAAS,GAAG,WAAW,IAAI,CAAC,CAAC;IAEnC,OAAO,CAAC,YAAY,CAClB;QACE,aAAa,EAAE,IAAI;QACnB,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,QAAQ;QAC7B,QAAQ,EAAE,KAAK,CAAC,QAAQ;QACxB,MAAM,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;QACrB,SAAS,EAAE,KAAK,CAAC,IAAI,CAAC,UAAU;QAChC,OAAO,EAAE,SAAS;QAClB,YAAY,EAAE,YAAY;KAC3B,EACD,CAAC,IAAI,EAAE,EAAE;QACP,OAAO,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC;QAC9B,OAAO,CAAC,GAAG,EAAE,CAAC;QACd,OAAO,CAAC,EAAE,CAAC,MAAM,EAAE,cAAC,CAAC,OAAO,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC;QACnD,OAAO,CAAC,EAAE,CAAC,UAAU,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;QACtC,OAAO,CAAC,EAAE,CAAC,SAAS,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;QAEnC,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;YACnB,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC;QACvC,CAAC;QAED,OAAO,CAAC,GAAG,EAAE,CAAC;QACd,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YACjB,OAAO,CAAC,IAAI,CAAC,oDAAoD,CAAC,CAAC;QACrE,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,EAAE,CAAC,kBAAkB,EAAE,GAAG,IAAI,CAAC,YAAY,MAAM,CAAC,CAAC;QAC7D,CAAC;IACH,CAAC,CACF,CAAC;AACJ,CAAC,CAAC,CAAC"}

package/dist/commands/wrap.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"wrap.d.ts","sourceRoot":"","sources":["../../src/commands/wrap.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA6KpC,eAAO,MAAM,WAAW,SAuSpB,CAAC"}
+{"version":3,"file":"wrap.d.ts","sourceRoot":"","sources":["../../src/commands/wrap.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA6KpC,eAAO,MAAM,WAAW,SA6TpB,CAAC"}

package/dist/commands/wrap.js

@@ -201,9 +201,32 @@ exports.wrapCommand = new commander_1.Command("wrap")
     .action(async (geneName, options) => {
     const root = (0, project_root_js_1.requireProjectRoot)();
     const config = (0, config_js_1.loadConfig)(root);
-    const domain = await resolveDomain(geneName, options.domain, config.default_domain || "general");
+    let domain;
+    try {
+        domain = await resolveDomain(geneName, options.domain, config.default_domain || "general");
+    }
+    catch (e) {
+        display.rustStyleError({
+            code: "E0004",
+            message: e instanceof Error ? e.message : "Invalid domain",
+            suggestion: "Pass a valid --domain, or check the configured default_domain.",
+            docsUrl: "https://rotifer.dev/docs/genes",
+        });
+        process.exit(1);
+    }
     display.header("Gene Wrapper");
-    (0, validate_gene_name_js_1.validateGeneName)(geneName);
+    try {
+        (0, validate_gene_name_js_1.validateGeneName)(geneName);
+    }
+    catch (e) {
+        display.rustStyleError({
+            code: "E0004",
+            message: e instanceof Error ? e.message : "Invalid gene name",
+            suggestion: "Use a short name without path separators or '..' (letters, digits, '-', '_').",
+            docsUrl: "https://rotifer.dev/docs/genes",
+        });
+        process.exit(1);
+    }
     const geneDir = (0, node_path_1.join)(root, config.genes_dir, geneName);
     if (options.fromClawhub) {
         const slug = options.fromClawhub;

package/dist/commands/wrap.js.map

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package/dist/index.js

@@ -9,6 +9,7 @@ const scan_js_1 = require("./commands/scan.js");
 const wrap_js_1 = require("./commands/wrap.js");
 const test_js_1 = require("./commands/test.js");
 const compile_js_1 = require("./commands/compile.js");
+const doctor_js_1 = require("./commands/doctor.js");
 const arena_submit_js_1 = require("./commands/arena-submit.js");
 const arena_list_js_1 = require("./commands/arena-list.js");
 const arena_watch_js_1 = require("./commands/arena-watch.js");
@@ -67,6 +68,7 @@ program.addCommand(scan_js_1.scanCommand);
 program.addCommand(wrap_js_1.wrapCommand);
 program.addCommand(test_js_1.testCommand);
 program.addCommand(compile_js_1.compileCommand);
+program.addCommand(doctor_js_1.doctorCommand);
 program.addCommand(login_js_1.loginCommand);
 program.addCommand(logout_js_1.logoutCommand);
 program.addCommand(publish_js_1.publishCommand);

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/types/phenotype.d.ts

@@ -0,0 +1,181 @@
+/**
+ * Phenotype type definitions — v0.9.1 §3.3 (ADR-253 D4.4 + ADR-277 D7 L3).
+ *
+ * Single source of truth for Phenotype field schemas in TypeScript. The
+ * runtime validator (`utils/phenotype-validator.ts`) imports the const
+ * arrays from here so the enum surface stays in sync between type-check
+ * time and runtime validation.
+ *
+ * Spec alignment: §4.2 RotiferGeneSpec. The `executionModel` field is
+ * pending L2 Spec Patch (Tier 2) — track via Plan §3.3.
+ */
+/**
+ * Declares how a Gene is consumed at runtime.
+ *
+ * - `CHAT`: Conversational Agent (chat URL surface applies — rotifer.ai
+ *   `/agents/[creator]/[name]` renders a chat interface).
+ * - `BATCH`: Synchronous function-call style invocation. Default for legacy
+ *   v0.8.x Genes that pre-date this enum.
+ * - `EVENT_DRIVEN`: Triggered by external events (cron, webhook, message).
+ *
+ * Absent field is treated as `BATCH` at runtime for backward compatibility
+ * with pre-§3.3 published Genes.
+ */
+export type ExecutionModel = "CHAT" | "BATCH" | "EVENT_DRIVEN";
+export declare const EXECUTION_MODELS: readonly ExecutionModel[];
+export type SynthesisMethod = "MANUAL" | "LLM_ASSISTED" | "LLM_AUTO" | "MUTATION" | "DE_NOVO";
+export declare const SYNTHESIS_METHODS: readonly SynthesisMethod[];
+export type Fidelity = "Wrapped" | "Hybrid" | "Native" | "Unknown";
+/**
+ * Gene source-code transparency (spec §4.2 `GeneTransparency`, §10.4). Mirrors
+ * the Rust IR `GeneTransparency`. Spec serialises UPPERCASE; legacy PascalCase
+ * literals are accepted with a deprecation warning until v0.9.2 (see
+ * `LEGACY_GENE_TRANSPARENCIES`).
+ */
+export type GeneTransparency = "OPEN" | "OPAQUE";
+export declare const GENE_TRANSPARENCIES: readonly GeneTransparency[];
+/** Pre-§3.3 PascalCase transparency literals → spec UPPERCASE. Removed v0.9.2. */
+export declare const LEGACY_GENE_TRANSPARENCIES: Readonly<Record<string, GeneTransparency>>;
+/**
+ * FIDELITY_DISCOUNT — protocol parameter (spec §5.1 v2.11).
+ *
+ * Multiplied into F(g) so that Native, Hybrid, and Wrapped genes can compete
+ * on a single Arena ranking without privileging external-API-shaped genes.
+ *
+ *   F(g) = base_fitness × FIDELITY_DISCOUNT[gene.fidelity]
+ *
+ * Keys are the lowercase canonical form (Q2=c 2026-05-28 — case
+ * normalization between spec enum (UPPER) and runtime keys (lower) is
+ * deferred to Phase 5 / v0.9.1; current binding implementations should
+ * normalize via lowercasing before lookup).
+ *
+ * PAP minor adjustment: Δ ≤ 0.05 per discount tier per cycle (spec §14.6).
+ */
+export declare const FIDELITY_DISCOUNT: Readonly<Record<string, number>>;
+/**
+ * Semantic-layer external API dependency declaration.
+ *
+ * Complements the protocol-layer NetworkConfig — `network` declares the
+ * sandbox's domain whitelist + timeouts, while `externalDependencies`
+ * declares the *semantic* contract (what kind of service, expected SLA,
+ * and degradation behavior).
+ *
+ * Spec §4.2 v2.11; v0.9 plan §3.11 (A2=b decision); ADR-220 §"D-04".
+ */
+export interface ExternalDependency {
+    /** Protocol family — "rest" | "graphql" | "grpc" | "websocket". */
+    apiType: string;
+    /** Semantic identifier (e.g. "cve-database", "llm-judge", "git-cli"). */
+    semanticTag: string;
+    /** Optional expected SLA. */
+    sla?: {
+        expectedLatency?: number;
+        expectedAvailability?: number;
+    };
+    /**
+     * How the gene behaves when this dependency is unreachable — the
+     * external-dependency axis (spec §4.2 `DegradationBehavior`), one of three
+     * orthogonal degradation axes (ADR-220 E2, ADR-297): external-dependency
+     * behavior ⊥ degradation mode (`DegradationSpec.mode`) ⊥ eventual failure
+     * semantics. Mirrors the Rust IR `ExternalDependencyBehavior`. The legacy
+     * PascalCase literals still validate with a deprecation warning through the
+     * v0.9.1 grace window (see `LEGACY_DEGRADATION_BEHAVIORS`; removed v0.9.2).
+     */
+    degradationBehavior: ExternalDependencyBehavior;
+}
+/** Spec §4.2 `DegradationBehavior` — external-dependency unreachable behavior. */
+export type ExternalDependencyBehavior = "FAIL" | "FALLBACK" | "CACHE" | "SKIP";
+export declare const DEGRADATION_BEHAVIORS: readonly ExternalDependencyBehavior[];
+/**
+ * Legacy `degradationBehavior` literals (the pre-§3.3 collapsed 5-variant set)
+ * mapped to their spec replacement. Accepted with a deprecation warning through
+ * the v0.9.1 grace window; removed in v0.9.2 (ADR-297 D3 phase 4). The two
+ * transaction-axis values (PartialRetry / AtomicRollback) were mis-merged into
+ * this dependency axis and map to the closest dependency behavior.
+ */
+export declare const LEGACY_DEGRADATION_BEHAVIORS: Readonly<Record<string, ExternalDependencyBehavior>>;
+/**
+ * Spec §45 `FailureSemantics` — the transaction (eventual-failure) axis,
+ * orthogonal to `degradationBehavior`. Mirrors the Rust IR
+ * `EventualFailureSemantics`; enforced on the IR side (no TS phenotype field
+ * consumes it yet) and declared here for cross-language parity.
+ */
+export type EventualFailureSemantics = "ATOMIC_ROLLBACK" | "PARTIAL_RETRY" | "SILENT_DEGRADE" | "FAIL_FAST";
+/**
+ * Dry-run protocol declaration (ADR-220 T1, "Tesla mind simulation" pattern).
+ *
+ * Spec §4.2 v2.11; v0.9 plan §3.11.
+ */
+export interface SimulationSpec {
+    supportsDryRun: boolean;
+    /** Inline expression that generates representative test input. */
+    syntheticInputGenerator?: string;
+    /** Inline expression that validates dry-run output. */
+    expectedOutputValidator?: string;
+    resourceEstimate: {
+        estimatedLatencyMs: number;
+        /** SHOULD for LLM-Native genes. */
+        estimatedTokens?: number;
+    };
+}
+/**
+ * Graceful degradation declaration (ADR-220 E2, "Euler post-blindness").
+ *
+ * Spec §4.2 v2.11; v0.9 plan §3.11.
+ */
+export interface DegradationSpec {
+    mode: "FAIL_FAST" | "PARTIAL_OUTPUT" | "FALLBACK_LOGIC";
+    /** SHOULD for PARTIAL_OUTPUT mode — schema of degraded output. */
+    fallbackOutputSchema?: unknown;
+    /** Set of `externalDependencies[].semanticTag` values whose absence is tolerable. */
+    minimumDependencies: string[];
+}
+export declare const DEGRADATION_MODES: readonly DegradationSpec["mode"][];
+export type TemplateFormat = "mustache" | "handlebars" | "jinja2" | "fstring" | "raw";
+export declare const TEMPLATE_FORMATS: readonly TemplateFormat[];
+export type GuardPosition = "input" | "output" | "both";
+export declare const GUARD_POSITIONS: readonly GuardPosition[];
+export interface LlmRequirements {
+    templateFormat?: TemplateFormat;
+    templateVariables?: string[];
+}
+export interface GuardConfig {
+    position?: GuardPosition;
+    categories?: string[];
+    riskThreshold?: number;
+}
+/**
+ * Phenotype is the metadata + behavioral declaration block of a Gene.
+ *
+ * v0.9.1 §3.3 adds `executionModel` (and forward-compat optional `systemPrompt`
+ * for CHAT mode) per ADR-253 D4.4 + ADR-256 D4.
+ *
+ * All fields are optional at the type level — runtime validation enforces
+ * which combinations are required (see `phenotype-validator.ts`).
+ */
+export interface Phenotype {
+    name?: string;
+    domain?: string;
+    version?: string;
+    fidelity?: Fidelity;
+    /** Source-code transparency (spec §4.2). Optional; legacy genes lack it. */
+    transparency?: GeneTransparency;
+    description?: string;
+    synthesisMethod?: SynthesisMethod;
+    inputSchema?: unknown;
+    outputSchema?: unknown;
+    executionModel?: ExecutionModel;
+    /**
+     * Optional system prompt for CHAT mode. Consumed by the rotifer.ai chat
+     * surface as the Agent's initial system message. Ignored for non-CHAT
+     * executionModel (validator emits W0101 if set).
+     */
+    systemPrompt?: string;
+    llmRequirements?: LlmRequirements;
+    guardConfig?: GuardConfig;
+    externalDependencies?: ExternalDependency[];
+    simulationSpec?: SimulationSpec;
+    degradationSpec?: DegradationSpec;
+    [key: string]: unknown;
+}
+//# sourceMappingURL=phenotype.d.ts.map

package/dist/types/phenotype.d.ts.map

@@ -0,0 +1 @@
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package/dist/types/phenotype.js

@@ -0,0 +1,87 @@
+"use strict";
+/**
+ * Phenotype type definitions — v0.9.1 §3.3 (ADR-253 D4.4 + ADR-277 D7 L3).
+ *
+ * Single source of truth for Phenotype field schemas in TypeScript. The
+ * runtime validator (`utils/phenotype-validator.ts`) imports the const
+ * arrays from here so the enum surface stays in sync between type-check
+ * time and runtime validation.
+ *
+ * Spec alignment: §4.2 RotiferGeneSpec. The `executionModel` field is
+ * pending L2 Spec Patch (Tier 2) — track via Plan §3.3.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.GUARD_POSITIONS = exports.TEMPLATE_FORMATS = exports.DEGRADATION_MODES = exports.LEGACY_DEGRADATION_BEHAVIORS = exports.DEGRADATION_BEHAVIORS = exports.FIDELITY_DISCOUNT = exports.LEGACY_GENE_TRANSPARENCIES = exports.GENE_TRANSPARENCIES = exports.SYNTHESIS_METHODS = exports.EXECUTION_MODELS = void 0;
+exports.EXECUTION_MODELS = [
+    "CHAT",
+    "BATCH",
+    "EVENT_DRIVEN",
+];
+exports.SYNTHESIS_METHODS = [
+    "MANUAL",
+    "LLM_ASSISTED",
+    "LLM_AUTO",
+    "MUTATION",
+    "DE_NOVO",
+];
+exports.GENE_TRANSPARENCIES = ["OPEN", "OPAQUE"];
+/** Pre-§3.3 PascalCase transparency literals → spec UPPERCASE. Removed v0.9.2. */
+exports.LEGACY_GENE_TRANSPARENCIES = Object.freeze({
+    Open: "OPEN",
+    Opaque: "OPAQUE",
+});
+// ─── Hybrid Fidelity (Spec §4.2 v2.11 + §3.11 v0.9 plan + ADR-220) ───────────
+/**
+ * FIDELITY_DISCOUNT — protocol parameter (spec §5.1 v2.11).
+ *
+ * Multiplied into F(g) so that Native, Hybrid, and Wrapped genes can compete
+ * on a single Arena ranking without privileging external-API-shaped genes.
+ *
+ *   F(g) = base_fitness × FIDELITY_DISCOUNT[gene.fidelity]
+ *
+ * Keys are the lowercase canonical form (Q2=c 2026-05-28 — case
+ * normalization between spec enum (UPPER) and runtime keys (lower) is
+ * deferred to Phase 5 / v0.9.1; current binding implementations should
+ * normalize via lowercasing before lookup).
+ *
+ * PAP minor adjustment: Δ ≤ 0.05 per discount tier per cycle (spec §14.6).
+ */
+exports.FIDELITY_DISCOUNT = Object.freeze({
+    native: 1.0,
+    hybrid: 0.85,
+    wrapped: 0.7,
+});
+exports.DEGRADATION_BEHAVIORS = [
+    "FAIL",
+    "FALLBACK",
+    "CACHE",
+    "SKIP",
+];
+/**
+ * Legacy `degradationBehavior` literals (the pre-§3.3 collapsed 5-variant set)
+ * mapped to their spec replacement. Accepted with a deprecation warning through
+ * the v0.9.1 grace window; removed in v0.9.2 (ADR-297 D3 phase 4). The two
+ * transaction-axis values (PartialRetry / AtomicRollback) were mis-merged into
+ * this dependency axis and map to the closest dependency behavior.
+ */
+exports.LEGACY_DEGRADATION_BEHAVIORS = Object.freeze({
+    FailFast: "FAIL",
+    SilentDegrade: "FALLBACK",
+    Retry: "CACHE",
+    PartialRetry: "CACHE",
+    AtomicRollback: "FAIL",
+});
+exports.DEGRADATION_MODES = [
+    "FAIL_FAST",
+    "PARTIAL_OUTPUT",
+    "FALLBACK_LOGIC",
+];
+exports.TEMPLATE_FORMATS = [
+    "mustache",
+    "handlebars",
+    "jinja2",
+    "fstring",
+    "raw",
+];
+exports.GUARD_POSITIONS = ["input", "output", "both"];
+//# sourceMappingURL=phenotype.js.map

package/dist/types/phenotype.js.map

@@ -0,0 +1 @@
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package/dist/utils/binding.d.ts

@@ -37,10 +37,35 @@ export interface NativeBinding {
     l0Check(phenotypeJson: string, permissionsJson?: string, constraintsJson?: string): L0CheckResultView;
     executeAlgebra(algebraJson: string, geneEntriesJson: string, inputJson: string): AlgebraResultView;
 }
+export declare function tryLoadBinding(): NativeBinding | null;
+/** A gene announcement received from a peer (mirrors the Rust napi struct). */
+export interface ReceivedAnnouncement {
+    geneId: string;
+    name: string;
+    domain: string;
+    version: string;
+    fidelity: string;
+    publisher: string;
+    source?: string;
+}
 /**
- * Try to load the napi native addon.
- * Returns null if the addon is not available (fallback to pure-TS path).
+ * Subset of the native `P2pNode` class surfaced to the CLI. Method names are
+ * camelCase (napi converts the Rust snake_case automatically).
  */
-export declare function tryLoadBinding(): NativeBinding | null;
+export interface P2pNodeHandle {
+    start(): void;
+    peerId(): string;
+    listenAddrs(): string[];
+    discoveredPeers(): string[];
+    receivedAnnouncements(): ReceivedAnnouncement[];
+    announceGene(geneId: string, name: string, domain: string, version: string, fidelity: string): void;
+    stop(): void;
+}
+/**
+ * Construct a native libp2p P2P node. Returns null when the native addon is
+ * unavailable (e.g. a pure-TS environment without the compiled `.node`), so
+ * callers can degrade gracefully.
+ */
+export declare function loadP2pNode(listenHost: string, listenPort: number, bootstrapPeers: string[]): P2pNodeHandle | null;
 export declare function isNativeAvailable(): boolean;
 //# sourceMappingURL=binding.d.ts.map

package/dist/utils/binding.d.ts.map

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