@rotifer/playground 0.5.0-alpha.2 → 0.7.0

package/dist/utils/binding.d.ts

@@ -4,6 +4,28 @@ export interface CompileResultView {
     codeSectionSize: number;
     wasmAvailable: boolean;
 }
+export interface ExecutionResultView {
+    success: boolean;
+    output: unknown;
+    errorMessage: string | null;
+    fuelConsumed: number;
+    memoryPeakKb: number;
+    durationMs: number;
+    sandboxType: string;
+}
+export interface L0CheckResultView {
+    passed: boolean;
+    violations: string[];
+    checksPerformed: number;
+}
+export interface AlgebraResultView {
+    success: boolean;
+    output: unknown;
+    errorMessage: string | null;
+    stepsExecuted: number;
+    totalFuelConsumed: number;
+    totalDurationMs: number;
+}
 export interface NativeBinding {
     compileGeneToFile(wasmBytes: Buffer, phenotypeJson: string, outputPath: string): CompileResultView;
     verifyIrModule(wasmBytes: Buffer): string;
@@ -11,6 +33,9 @@ export interface NativeBinding {
     buildSearchGeneWasm(): Buffer;
     buildSummarizeGeneWasm(): Buffer;
     buildTranslateGeneWasm(): Buffer;
+    executeGene(wasmBytes: Buffer, inputJson: string, phenotypeJson: string, constraintsJson?: string): ExecutionResultView;
+    l0Check(phenotypeJson: string, permissionsJson?: string, constraintsJson?: string): L0CheckResultView;
+    executeAlgebra(algebraJson: string, geneEntriesJson: string, inputJson: string): AlgebraResultView;
 }
 /**
  * Try to load the napi native addon.

package/dist/utils/binding.d.ts.map

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package/dist/utils/binding.js.map

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package/dist/utils/open-browser.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Build the shell command to open a URL in the default browser.
+ * Exported separately for testability.
+ */
+export declare function buildOpenCommand(url: string, platform: string): string;
+/**
+ * Open a URL in the user's default browser, cross-platform.
+ */
+export declare function openBrowser(url: string): void;
+//# sourceMappingURL=open-browser.d.ts.map

package/dist/utils/open-browser.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"open-browser.d.ts","sourceRoot":"","sources":["../../src/utils/open-browser.ts"],"names":[],"mappings":"AAEA;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAMtE;AAED;;GAEG;AACH,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,GAAG,IAAI,CAE7C"}

package/dist/utils/open-browser.js

@@ -0,0 +1,23 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.buildOpenCommand = buildOpenCommand;
+exports.openBrowser = openBrowser;
+const node_child_process_1 = require("node:child_process");
+/**
+ * Build the shell command to open a URL in the default browser.
+ * Exported separately for testability.
+ */
+function buildOpenCommand(url, platform) {
+    if (platform === "win32") {
+        return `start "" "${url}"`;
+    }
+    const bin = platform === "darwin" ? "open" : "xdg-open";
+    return `${bin} "${url}"`;
+}
+/**
+ * Open a URL in the user's default browser, cross-platform.
+ */
+function openBrowser(url) {
+    (0, node_child_process_1.exec)(buildOpenCommand(url, process.platform));
+}
+//# sourceMappingURL=open-browser.js.map

package/dist/utils/open-browser.js.map

@@ -0,0 +1 @@
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package/genes/academic-writer/.cloud-manifest.json

@@ -0,0 +1,6 @@
+{
+  "cloud_id": "6258ceaf-8610-4c2f-bbeb-e62ba3b6664d",
+  "owner": "Rotifer Protocol",
+  "version": "0.1.0",
+  "published_at": "2026-03-17T14:11:44.403Z"
+}

package/genes/academic-writer/.gene-manifest.json

@@ -0,0 +1,8 @@
+{
+  "geneId": "f3f7ed9e0099a055c841c1573024a89b853e17772201a7183ae49760bb2db0a0",
+  "name": "academic-writer",
+  "domain": "content.academic",
+  "fidelity": "Wrapped",
+  "wrappedAt": "2026-02-24T13:23:10.543Z",
+  "fromSkill": "../.cursor/skills/academic-writer/SKILL.md"
+}

package/genes/academic-writer/SKILL.md

@@ -0,0 +1,274 @@
+---
+name: academic-writer
+description: Write academic papers, research reports, and scholarly content. Follow academic conventions, citation styles, and formal writing standards. Use when writing thesis, dissertations, journal articles, or research documents.
+---
+
+# Academic Writer (学术写作师)
+
+**Goal**: 撰写符合学术规范的论文、研究报告和学术内容。
+
+---
+
+## 1. 论文结构
+
+### 标准学术论文结构
+
+```markdown
+1. 标题 (Title)
+   - 简洁、准确、信息丰富
+   - 包含关键词
+   - 避免缩写（首次使用）
+
+2. 摘要 (Abstract)
+   - 200-300 字（中文）/ 150-250 词（英文）
+   - 包含：背景、目的、方法、结果、结论
+   - 独立成段，不分小节
+
+3. 关键词 (Keywords)
+   - 3-5 个
+   - 涵盖研究主题
+
+4. 引言 (Introduction)
+   - 研究背景
+   - 文献回顾
+   - 研究问题/假设
+   - 研究目的
+
+5. 方法 (Methodology)
+   - 研究设计
+   - 样本/数据
+   - 分析方法
+   - 可重复性
+
+6. 结果 (Results)
+   - 客观呈现数据
+   - 图表辅助
+   - 统计显著性
+
+7. 讨论 (Discussion)
+   - 结果解释
+   - 与现有研究比较
+   - 局限性
+   - 未来研究方向
+
+8. 结论 (Conclusion)
+   - 主要发现总结
+   - 研究贡献
+   - 实践意义
+
+9. 参考文献 (References)
+   - 按引用格式排列
+```
+
+---
+
+## 2. 引用格式
+
+### APA 格式 (第7版)
+
+```markdown
+## 期刊文章
+Author, A. A., & Author, B. B. (Year). Title of article. Title of Periodical, volume(issue), page–page. https://doi.org/xxxxx
+
+## 书籍
+Author, A. A. (Year). Title of work: Capital letter also for subtitle. Publisher.
+
+## 网页
+Author, A. A. (Year, Month Day). Title of page. Site Name. URL
+
+## 文内引用
+- 单作者: (Smith, 2020)
+- 双作者: (Smith & Jones, 2020)
+- 三作者及以上: (Smith et al., 2020)
+```
+
+### MLA 格式 (第9版)
+
+```markdown
+## 期刊文章
+Last name, First name. "Title of Article." Journal Name, vol. #, no. #, Year, pp. #-#.
+
+## 书籍
+Last name, First name. Title of Book. Publisher, Year.
+
+## 文内引用
+- (Smith 45)
+- (Smith and Jones 45)
+```
+
+### GB/T 7714 格式
+
+```markdown
+## 期刊文章
+[序号] 作者. 题名[J]. 刊名, 年, 卷(期): 起止页码.
+
+## 书籍
+[序号] 作者. 书名[M]. 出版地: 出版社, 年份.
+
+## 示例
+[1] 张三, 李四. 人工智能研究进展[J]. 计算机学报, 2024, 47(3): 512-528.
+```
+
+---
+
+## 3. 学术语言规范
+
+### 应该使用
+
+| 场景 | 推荐表达 |
+|------|----------|
+| 陈述发现 | 研究表明、结果显示、数据揭示 |
+| 表达观点 | 可以认为、本研究认为 |
+| 推测 | 可能、或许、似乎表明 |
+| 比较 | 相比于、与...相比、区别于 |
+| 结论 | 综上所述、基于上述分析 |
+
+### 应该避免
+
+```markdown
+❌ 我觉得、我认为（主观）
+❌ 很多、非常（模糊）
+❌ 口语化表达
+❌ 绝对化表述（一定、肯定）
+❌ 感叹句、疑问句过多
+```
+
+### 学术常用句型
+
+```markdown
+## 引言
+- 近年来，...领域受到广泛关注
+- 然而，现有研究存在...局限性
+- 本研究旨在...
+
+## 方法
+- 本研究采用...方法
+- 数据来源于...
+- 研究对象包括...
+
+## 结果
+- 结果表明...
+- 如表/图X所示...
+- 数据显示...
+
+## 讨论
+- 这一发现与...一致/不一致
+- 可能的解释是...
+- 值得注意的是...
+
+## 结论
+- 综上所述，本研究发现...
+- 本研究的贡献在于...
+- 未来研究可以...
+```
+
+---
+
+## 4. 图表规范
+
+### 表格格式
+
+```markdown
+表 X. 表格标题（位于表格上方）
+
+| 变量 | 均值 | 标准差 | p值 |
+|------|------|--------|-----|
+| A | 3.45 | 0.82 | <.001 |
+| B | 2.89 | 0.91 | .023 |
+
+注：* p < .05, ** p < .01, *** p < .001
+```
+
+### 图片格式
+
+```markdown
+[图片]
+
+图 X. 图片标题（位于图片下方）
+注：数据来源于...；N = 样本量
+```
+
+---
+
+## 5. 摘要写作模板
+
+### 中文摘要
+
+```markdown
+[背景] 随着...的发展，...问题日益突出。
+[目的] 本研究旨在探讨/分析/验证...
+[方法] 采用...方法，对...进行研究。
+[结果] 研究发现：（1）...；（2）...；（3）...
+[结论] 研究表明...，对...具有重要意义。
+
+关键词：关键词1；关键词2；关键词3
+```
+
+### 英文摘要
+
+```markdown
+[Background] With the development of..., ... has become increasingly important.
+[Purpose] This study aims to investigate/examine/explore...
+[Methods] Using ... approach, we analyzed...
+[Results] The findings indicate that: (1)...; (2)...; (3)...
+[Conclusion] The study suggests that..., which has implications for...
+
+Keywords: keyword1; keyword2; keyword3
+```
+
+---
+
+## 6. 检查清单
+
+```markdown
+## Academic Writing Checklist
+
+### 结构
+- [ ] 标题准确反映内容
+- [ ] 摘要包含所有要素
+- [ ] 各章节结构完整
+- [ ] 逻辑流畅
+
+### 引用
+- [ ] 引用格式统一
+- [ ] 所有引用都有出处
+- [ ] 参考文献列表完整
+- [ ] 无格式错误
+
+### 语言
+- [ ] 学术语气
+- [ ] 客观表述
+- [ ] 无口语化
+- [ ] 术语准确
+
+### 规范
+- [ ] 图表编号正确
+- [ ] 图表标题完整
+- [ ] 数据来源标注
+- [ ] 页码格式正确
+```
+
+---
+
+## Quick Reference
+
+### 学术写作原则
+
+```markdown
+1. 客观性 - 避免主观判断
+2. 准确性 - 数据和引用准确
+3. 简洁性 - 避免冗余表达
+4. 逻辑性 - 论证严密
+5. 规范性 - 遵循格式要求
+```
+
+### 论文各部分字数参考（中文）
+
+| 部分 | 占比 | 万字论文 |
+|------|------|----------|
+| 摘要 | 2-3% | 200-300字 |
+| 引言 | 10-15% | 1000-1500字 |
+| 方法 | 15-20% | 1500-2000字 |
+| 结果 | 20-25% | 2000-2500字 |
+| 讨论 | 25-30% | 2500-3000字 |
+| 结论 | 5-10% | 500-1000字 |

package/genes/academic-writer/phenotype.json

@@ -0,0 +1,28 @@
+{
+  "domain": "content.academic",
+  "description": "Write academic papers, research reports, and scholarly content. Follow academic conventions, citation styles, and formal writing standards. Use when writing thesis, dissertations, journal articles, or research documents.",
+  "inputSchema": {
+    "type": "object",
+    "properties": {
+      "prompt": {
+        "type": "string"
+      }
+    },
+    "required": []
+  },
+  "outputSchema": {
+    "type": "object",
+    "properties": {
+      "result": {
+        "type": "string"
+      }
+    }
+  },
+  "dependencies": [],
+  "version": "0.1.0",
+  "author": "rotifer-team",
+  "createdAt": 1771939390540,
+  "fidelity": "Wrapped",
+  "transparency": "Open",
+  "source": "skill"
+}

package/genes/ai-components/.cloud-manifest.json

@@ -0,0 +1,6 @@
+{
+  "cloud_id": "4c9836a9-2244-4505-b221-b45d4b47319b",
+  "owner": "Rotifer Protocol",
+  "version": "0.1.0",
+  "published_at": "2026-03-17T14:11:46.608Z"
+}

package/genes/ai-components/.gene-manifest.json

@@ -0,0 +1,8 @@
+{
+  "geneId": "1c2b20e637c393486e300fcc73052ecc7dd16f0b09e2b2a42b06d5418ee8a785",
+  "name": "ai-components",
+  "domain": "ui.ai",
+  "fidelity": "Wrapped",
+  "wrappedAt": "2026-02-24T13:23:05.955Z",
+  "fromSkill": "../.cursor/skills/ai-components/SKILL.md"
+}