@rotifer/playground 0.32.1 → 0.33.0

package/dist/commands/compile.js

@@ -45,9 +45,11 @@ const project_root_js_1 = require("../utils/project-root.js");
 const binding_js_1 = require("../utils/binding.js");
 const javy_compiler_js_1 = require("../utils/javy-compiler.js");
 const content_hash_js_1 = require("../utils/content-hash.js");
+const rust_phenotype_js_1 = require("../utils/rust-phenotype.js");
 const phenotype_validator_js_1 = require("../utils/phenotype-validator.js");
 const validate_gene_name_js_1 = require("../utils/validate-gene-name.js");
 const artifact_consistency_js_1 = require("../utils/artifact-consistency.js");
+const gene_id_display_js_1 = require("../utils/gene-id-display.js");
 exports.compileCommand = new commander_1.Command("compile")
     .description("Compile a gene to Rotifer IR (WASM)")
     .argument("[gene-name]", "gene name to compile")
@@ -108,6 +110,19 @@ exports.compileCommand = new commander_1.Command("compile")
         });
         process.exit(1);
     }
+    // rotifer-core reads createdAt as epoch ms; `wrap` writes ISO 8601, which
+    // toRustPhenotype converts below. Anything that is neither would be
+    // defaulted to 0 there, so it is reported here, by name (#448).
+    const createdAtError = (0, rust_phenotype_js_1.createdAtProblem)(phenotype);
+    if (createdAtError) {
+        display.rustStyleError({
+            code: "E0023",
+            message: `Invalid phenotype field: ${createdAtError}`,
+            file: phenotypePath,
+            suggestion: "Fix or remove createdAt in phenotype.json (rotifer wrap writes an ISO 8601 timestamp)",
+        });
+        process.exit(1);
+    }
     display.success("Phenotype validation passed");
     (0, phenotype_validator_js_1.validateLlmNativePhenotype)(phenotype, phenotypePath);
     const { irHash: _strip, ...phenotypeForCompile } = phenotype;
@@ -115,7 +130,8 @@ exports.compileCommand = new commander_1.Command("compile")
     const phenoStr = (0, content_hash_js_1.canonicalSerialize)(phenotypeForCompile);
     if (options.check) {
         display.success(`Validation passed for '${geneName}'`);
-        display.keyValue("Gene ID", palette_js_1.c.warn(geneId));
+        (0, gene_id_display_js_1.showGeneIdV2)(geneDir);
+        (0, gene_id_display_js_1.showContentHash)(phenotype);
         return;
     }
     // Compile follows the declared fidelity. Only Native goes through Javy to a
@@ -151,7 +167,8 @@ exports.compileCommand = new commander_1.Command("compile")
         };
         (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, ".compile-result.json"), JSON.stringify(compileResult, null, 2) + "\n");
         display.success(`Gene '${geneName}' validated (Hybrid fidelity)`);
-        display.keyValue("Gene ID", palette_js_1.c.warn(geneId));
+        (0, gene_id_display_js_1.showGeneIdV2)(geneDir);
+        (0, gene_id_display_js_1.showContentHash)(phenotype);
         display.keyValue("Domain", phenotype.domain);
         display.keyValue("Fidelity", "Hybrid");
         display.keyValue("Gateway domains", phenotype.network?.allowedDomains?.join(", ") || "(none)");
@@ -253,7 +270,8 @@ exports.compileCommand = new commander_1.Command("compile")
         };
         (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, ".compile-result.json"), JSON.stringify(compileResult, null, 2) + "\n");
         display.success(`Gene '${geneName}' validated (Wrapped fidelity)`);
-        display.keyValue("Gene ID", palette_js_1.c.warn(geneId));
+        (0, gene_id_display_js_1.showGeneIdV2)(geneDir);
+        (0, gene_id_display_js_1.showContentHash)(phenotype);
         display.keyValue("Domain", phenotype.domain);
         display.keyValue("Fidelity", "Wrapped");
         return;
@@ -268,16 +286,23 @@ exports.compileCommand = new commander_1.Command("compile")
     if (binding) {
         display.info("  Engine: native IR compiler");
         try {
-            const result = binding.compileGeneToFile(wasmBytes, phenoStr, outputPath);
+            // The IR compiler deserializes rotifer-core's Phenotype, which wants
+            // createdAt as epoch ms; phenotype.json keeps what wrap wrote (#448).
+            const phenoForCore = (0, content_hash_js_1.canonicalSerialize)((0, rust_phenotype_js_1.toRustPhenotype)(phenotypeForCompile));
+            const result = binding.compileGeneToFile(wasmBytes, phenoForCore, outputPath);
             irHash = result.irHash;
             wasmSize = result.totalSize;
             codeSectionSize = result.codeSectionSize;
         }
         catch (err) {
+            const isPhenotypeError = String(err.message).includes("invalid phenotype JSON");
             display.rustStyleError({
                 code: "E0023",
                 message: `IR compilation failed: ${err.message}`,
-                suggestion: "Ensure the WASM module exports `express(i32,i32)->i32` + `memory`, or `_start` + `memory` (WASI)",
+                ...(isPhenotypeError ? { file: phenotypePath } : {}),
+                suggestion: isPhenotypeError
+                    ? "A phenotype.json field has a type rotifer-core does not accept; the message above names the value"
+                    : "Ensure the WASM module exports `express(i32,i32)->i32` + `memory`, or `_start` + `memory` (WASI)",
             });
             process.exit(1);
         }
@@ -322,7 +347,8 @@ exports.compileCommand = new commander_1.Command("compile")
     (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, ".compile-result.json"), JSON.stringify(compileResult, null, 2) + "\n");
     console.log();
     display.success(`Gene '${geneName}' compiled to Rotifer IR`);
-    display.keyValue("Gene ID", palette_js_1.c.warn(geneId));
+    (0, gene_id_display_js_1.showGeneIdV2)(geneDir);
+    (0, gene_id_display_js_1.showContentHash)(phenotype);
     display.keyValue("Domain", phenotype.domain);
     display.keyValue("Fidelity", phenotype.fidelity);
     if (phenotype.network) {

package/dist/commands/compile.js.map

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package/dist/commands/genome-format.d.ts

@@ -6,7 +6,11 @@ export declare const BLUEPRINT_PROTOCOL_VERSION: {
     readonly minor: 9;
     readonly patch: 2;
 };
-/** Default `minFitness` for a CapabilityQuery: the recommended τ of §5.1. */
+/**
+ * Default `minFitness` for a CapabilityQuery: 0.3, the τ §5.1 recommended
+ * before F(g) was normalized. §5.1 now pauses τ until it is recalibrated for
+ * the [0, 1] range (ADR-346 D4); this default stays 0.3 until then.
+ */
 export declare const DEFAULT_MIN_FITNESS = 0.3;
 /** §5.1: V_min MUST lie in [0.5, 1.0). */
 export declare const MIN_VG_FLOOR = 0.5;

package/dist/commands/genome-format.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"genome-format.d.ts","sourceRoot":"","sources":["../../src/commands/genome-format.ts"],"names":[],"mappings":"AAgBA,iEAAiE;AACjE,eAAO,MAAM,gBAAgB,IAAI,CAAC;AAElC,mEAAmE;AACnE,eAAO,MAAM,0BAA0B;;;;CAA4C,CAAC;AAEpF;;;;GAIG;AACH,eAAO,MAAM,mBAAmB,MAAM,CAAC;AAEvC,0CAA0C;AAC1C,eAAO,MAAM,YAAY,MAAM,CAAC;AAEhC,6EAA6E;AAC7E,eAAO,MAAM,YAAY,uBAAuB,CAAC;AAEjD,eAAO,MAAM,UAAU,QAAsB,CAAC;AAE9C,MAAM,WAAW,aAAa;IAC5B,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,MAAM,MAAM,SAAS,GAAG,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,UAAU,GAAG,SAAS,CAAC;AAE5F,MAAM,WAAW,SAAS;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,SAAS,CAAC;IACpB,KAAK,EAAE,OAAO,CAAC;CAChB;AAED,4EAA4E;AAC5E,MAAM,MAAM,WAAW,GACnB;IAAE,IAAI,EAAE;QAAE,OAAO,EAAE,aAAa,CAAA;KAAE,CAAA;CAAE,GACpC;IAAE,GAAG,EAAE;QAAE,KAAK,EAAE,WAAW,EAAE,CAAA;KAAE,CAAA;CAAE,GACjC;IAAE,GAAG,EAAE;QAAE,IAAI,EAAE,WAAW,CAAC;QAAC,KAAK,EAAE,WAAW,CAAA;KAAE,CAAA;CAAE,GAClD;IAAE,IAAI,EAAE;QAAE,SAAS,EAAE,SAAS,CAAC;QAAC,MAAM,EAAE,WAAW,CAAC;QAAC,OAAO,EAAE,WAAW,CAAA;KAAE,CAAA;CAAE,GAC7E;IAAE,QAAQ,EAAE;QAAE,IAAI,EAAE,WAAW,CAAC;QAAC,OAAO,EAAE,WAAW,CAAA;KAAE,CAAA;CAAE,CAAC;AAE9D,MAAM,WAAW,cAAc;IAC7B,KAAK,EAAE,aAAa,EAAE,CAAC;IACvB,WAAW,CAAC,EAAE,WAAW,CAAC;IAC1B,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,eAAe;IAC9B,MAAM,EAAE,MAAM,CAAC;IACf,iBAAiB,EAAE,OAAO,CAAC;IAC3B,kBAAkB,EAAE,OAAO,CAAC;IAC5B,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,CAAC,EAAE,MAAM,EAAE,CAAC;CAC3B;AAED,MAAM,WAAW,cAAc;IAC7B,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,eAAe;IAC9B,eAAe,EAAE,MAAM,CAAC;IACxB,eAAe,EAAE;QACf,KAAK,EAAE,MAAM,CAAC;QACd,KAAK,EAAE,MAAM,CAAC;QACd,KAAK,EAAE,MAAM,CAAC;QACd,iBAAiB,EAAE,MAAM,EAAE,CAAC;KAC7B,CAAC;IACF,QAAQ,EAAE,cAAc,CAAC;IACzB,QAAQ,EAAE;QACR,IAAI,EAAE,MAAM,CAAC;QACb,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,SAAS,EAAE,MAAM,CAAC;KACnB,CAAC;IACF,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC/C,eAAe,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;IACjD,iBAAiB,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;CAC7D;AAED,4EAA4E;AAC5E,eAAO,MAAM,WAAW,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,CAS3D,CAAC;AASF,MAAM,MAAM,eAAe,GAAG,UAAU,GAAG,eAAe,GAAG,SAAS,CAAC;AAEvE,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,eAAe,CAAC;IACvB,IAAI,EAAE,MAAM,CAAC;CACd;AAED,4HAA4H;AAC5H,eAAO,MAAM,oBAAoB,EAAE,SAAS,MAAM,EAajD,CAAC;AA+CF,eAAO,MAAM,aAAa,yBAAyB,CAAC;AAGpD,6CAA6C;AAC7C,wBAAgB,cAAc,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAUhD;AA2DD,MAAM,WAAW,WAAW;IAC1B,qFAAqF;IACrF,WAAW,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC;IAC1D,uDAAuD;IACvD,eAAe,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,OAAO,CAAC;CAChD;AAED,8GAA8G;AAC9G,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAIzD;AAED;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,OAAO,EAAE,OAAO,GAAE,WAAgB,GAAG,iBAAiB,EAAE,CA6C/F;AAMD;;;;;;;GAOG;AACH,MAAM,WAAW,oBAAoB;IACnC;;;;;;OAMG;IACH,mBAAmB,CAAC,EAAE,OAAO,CAAC;CAC/B;AAED,yFAAyF;AACzF,wBAAgB,yBAAyB,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,SAA0B,GAAG,GAAG,CAAC,MAAM,CAAC,CAqCpG;AAED,wBAAgB,aAAa,CAAC,SAAS,EAAE,eAAe,EAAE,OAAO,GAAE,oBAAyB,GAAG,iBAAiB,EAAE,CAmBjH;AAID,qBAAa,iBAAkB,SAAQ,KAAK;IACb,QAAQ,CAAC,IAAI,CAAC,EAAE,MAAM;gBAAvC,OAAO,EAAE,MAAM,EAAW,IAAI,CAAC,EAAE,MAAM,YAAA;CAIpD;AAID,4DAA4D;AAC5D,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,QAAQ,GAAG,KAAK,GAAG,KAAK,GAAG,MAAM,GAAG,KAAK,CAAC;IAChD,6DAA6D;IAC7D,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,OAAO,CAAA;KAAE,CAAC;CAC3D;AAED,MAAM,WAAW,eAAe;IAC9B,SAAS,EAAE,eAAe,CAAC;IAC3B,IAAI,EAAE,eAAe,CAAC;IACtB,iFAAiF;IACjF,QAAQ,EAAE,MAAM,CAAC;IACjB,qDAAqD;IACrD,cAAc,CAAC,EAAE,MAAM,CAAC;CACzB;AA0CD,wBAAgB,eAAe,CAAC,SAAS,EAAE,eAAe,GAAG,eAAe,CAmF3E;AAcD;;;;;;GAMG;AACH,wBAAgB,GAAG,CAAC,KAAK,EAAE,OAAO,GAAG,MAAM,CAa1C;AAoCD,gHAAgH;AAChH,wBAAgB,eAAe,CAAC,SAAS,EAAE,eAAe,GAAG,MAAM,CAIlE;AAED,wBAAgB,UAAU,CAAC,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,CAKhE;AA+GD,oGAAoG;AACpG,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,eAAe,CAuJ5D"}

package/dist/commands/genome-format.js

@@ -29,7 +29,11 @@ const pre_publish_check_js_1 = require("../publish/pre-publish-check.js");
 exports.BLUEPRINT_FORMAT = 1;
 /** Protocol version whose Blueprint layout this command writes. */
 exports.BLUEPRINT_PROTOCOL_VERSION = { major: 0, minor: 9, patch: 2 };
-/** Default `minFitness` for a CapabilityQuery: the recommended τ of §5.1. */
+/**
+ * Default `minFitness` for a CapabilityQuery: 0.3, the τ §5.1 recommended
+ * before F(g) was normalized. §5.1 now pauses τ until it is recalibrated for
+ * the [0, 1] range (ADR-346 D4); this default stays 0.3 until then.
+ */
 exports.DEFAULT_MIN_FITNESS = 0.3;
 /** §5.1: V_min MUST lie in [0.5, 1.0). */
 exports.MIN_VG_FLOOR = 0.5;

package/dist/commands/genome-format.js.map

@@ -1 +1 @@
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package/dist/commands/hello.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"hello.d.ts","sourceRoot":"","sources":["../../src/commands/hello.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA2GpC,UAAU,uBAAuB;IAC/B,MAAM,EAAE,OAAO,CAAC;IAChB,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AASD,eAAO,MAAM,YAAY,SAwHrB,CAAC;AAsbL,wBAAsB,qBAAqB,CACzC,MAAM,EAAE,MAAM,EAAE,EAChB,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,OAAO,GACb,OAAO,CAAC,uBAAuB,CAAC,CAmElC"}
+{"version":3,"file":"hello.d.ts","sourceRoot":"","sources":["../../src/commands/hello.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAgHpC,UAAU,uBAAuB;IAC/B,MAAM,EAAE,OAAO,CAAC;IAChB,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AASD,eAAO,MAAM,YAAY,SAwHrB,CAAC;AAsbL,wBAAsB,qBAAqB,CACzC,MAAM,EAAE,MAAM,EAAE,EAChB,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,OAAO,GACb,OAAO,CAAC,uBAAuB,CAAC,CA0ElC"}

package/dist/commands/hello.js

@@ -47,6 +47,7 @@ const agent_create_js_1 = require("./agent-create.js");
 const agent_run_js_1 = require("./agent-run.js");
 const binding_js_1 = require("../utils/binding.js");
 const l0_gate_js_1 = require("../utils/l0-gate.js");
+const network_gateway_js_1 = require("../runtime/network-gateway.js");
 const TEMPLATES = [
     {
         id: "quality-advisor",
@@ -86,7 +87,11 @@ const TEMPLATES = [
         name: "Code Security Scan",
         description: "Find vulnerabilities before hackers do",
         genes: ["security-scanner"],
-        fallbackGenes: ["genesis-code-format", "genesis-file-read"],
+        // No fallback: neither code-format nor file-read scans anything, and
+        // file-read accepted this template's `path` input, read the directory and
+        // returned an EISDIR error that ended as "Execution complete" (#454).
+        // Without security-scanner the template says so and stops.
+        fallbackGenes: [],
         composition: "Seq",
         exampleInput: { path: "./genes", includeTests: false },
         section: "quick",
@@ -626,7 +631,15 @@ async function executeGenomePipeline(genome, genesDir, input) {
                 display.warn(`${step} Gene '${geneName}' does not export express() — passing through`);
                 continue;
             }
-            current = await mod.express(current);
+            // A Hybrid gene reaches the network only through the gateway on its
+            // second argument, as `run`, `test` and `agent run` give it (#444).
+            if (phenotype.fidelity === "Hybrid" && phenotype.network) {
+                const { gatewayFetch } = (0, network_gateway_js_1.createGatewayFetch)(phenotype.network);
+                current = await mod.express(current, { gatewayFetch });
+            }
+            else {
+                current = await mod.express(current);
+            }
             display.success(`${step} ${geneName} completed`);
         }
         catch (err) {

package/dist/commands/hello.js.map

@@ -1 +1 @@
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package/dist/commands/run.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/commands/run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAWpC,eAAO,MAAM,UAAU,SA4NpB,CAAC"}
+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/commands/run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAcpC,eAAO,MAAM,UAAU,SA6QpB,CAAC"}