@rotifer/playground 0.30.2 → 0.31.0

package/dist/scanner/scanner.js

@@ -1,5 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.unscannedLanguages = unscannedLanguages;
 exports.scanFile = scanFile;
 exports.computeGrade = computeGrade;
 exports.scan = scan;
@@ -8,22 +9,28 @@ const node_path_1 = require("node:path");
 const rules_js_1 = require("./rules.js");
 const literals_js_1 = require("./literals.js");
 const CODE_EXTENSIONS = new Set([".ts", ".js", ".mts", ".mjs", ".cjs", ".tsx", ".jsx", ".sh", ".py"]);
+// Source files V(g) has no rules for. They are not read, but they are named in
+// the result: a gene written only in Rust otherwise looks exactly like a gene
+// with no code at all.
+const UNSUPPORTED_CODE_EXTENSIONS = new Set([
+    ".rs", ".go", ".c", ".h", ".cc", ".cpp", ".hpp", ".zig", ".java", ".kt", ".swift", ".rb", ".cs",
+]);
 // Files whose literals maskJsLiterals understands. .tsx/.jsx are left out (JSX
 // text such as `Don't` is not a string literal), as are .sh and .py, whose
 // quoting rules differ; those keep raw-line matching for every rule.
 const JS_EXTENSIONS = new Set([".ts", ".js", ".mts", ".mjs", ".cjs"]);
-function collectCodeFiles(dir) {
+function collectCodeFiles(dir, extensions = CODE_EXTENSIONS, skip = []) {
     const files = [];
     const walk = (d) => {
         for (const entry of (0, node_fs_1.readdirSync)(d)) {
-            if (entry === "node_modules" || entry === ".git" || entry === "dist")
+            if (entry === "node_modules" || entry === ".git" || entry === "dist" || skip.includes(entry))
                 continue;
             const full = (0, node_path_1.join)(d, entry);
             const st = (0, node_fs_1.statSync)(full);
             if (st.isDirectory()) {
                 walk(full);
             }
-            else if (CODE_EXTENSIONS.has((0, node_path_1.extname)(entry))) {
+            else if (extensions.has((0, node_path_1.extname)(entry))) {
                 files.push(full);
             }
         }
@@ -34,6 +41,47 @@ function collectCodeFiles(dir) {
 function hasSrcDirectory(dir) {
     return (0, node_fs_1.existsSync)((0, node_path_1.join)(dir, "src"));
 }
+/** Code files directly in `dir`, not in its subdirectories. */
+function collectTopLevelCodeFiles(dir, extensions = CODE_EXTENSIONS) {
+    return (0, node_fs_1.readdirSync)(dir)
+        .map((entry) => (0, node_path_1.join)(dir, entry))
+        .filter((full) => (0, node_fs_1.statSync)(full).isFile() && extensions.has((0, node_path_1.extname)(full)));
+}
+/**
+ * Which files a scan reads:
+ * - `--all`: every code file under `dir`.
+ * - otherwise src/ when it exists — a Skill's code lives there;
+ * - otherwise the code files at the top level of `dir`, not below it. Genes
+ *   keep index.ts at the gene root (every Genesis gene does), and reading
+ *   only src/ left all of them ungraded. Subdirectories stay out so that
+ *   test fixtures and vendored files are not graded as the gene.
+ */
+function selectFiles(dir, shouldScanAll) {
+    if (shouldScanAll)
+        return collectCodeFiles(dir);
+    if (hasSrcDirectory(dir))
+        return collectCodeFiles((0, node_path_1.join)(dir, "src"));
+    return collectTopLevelCodeFiles(dir);
+}
+/** The files selectFiles would have read had V(g) rules for their language.
+ * `target/` is skipped: it is Rust's build output, not the gene's source. */
+function selectUnscanned(dir, shouldScanAll) {
+    const files = shouldScanAll
+        ? collectCodeFiles(dir, UNSUPPORTED_CODE_EXTENSIONS, ["target"])
+        : hasSrcDirectory(dir)
+            ? collectCodeFiles((0, node_path_1.join)(dir, "src"), UNSUPPORTED_CODE_EXTENSIONS, ["target"])
+            : collectTopLevelCodeFiles(dir, UNSUPPORTED_CODE_EXTENSIONS);
+    return files.map((f) => (0, node_path_1.relative)(dir, f)).sort();
+}
+/** ".rs" files → "Rust"; unknown extensions are named by extension. */
+function unscannedLanguages(files) {
+    const names = {
+        ".rs": "Rust", ".go": "Go", ".c": "C", ".h": "C", ".cc": "C++", ".cpp": "C++", ".hpp": "C++",
+        ".zig": "Zig", ".java": "Java", ".kt": "Kotlin", ".swift": "Swift", ".rb": "Ruby", ".cs": "C#",
+    };
+    const langs = [...new Set(files.map((f) => names[(0, node_path_1.extname)(f)] ?? (0, node_path_1.extname)(f)))];
+    return langs.join(", ");
+}
 function scanFile(filePath, rootDir) {
     const content = (0, node_fs_1.readFileSync)(filePath, "utf-8");
     const lines = content.split("\n");
@@ -75,17 +123,22 @@ function computeGrade(findings) {
 }
 function scan(dir, skillId, options) {
     const shouldScanAll = options?.scanAll ?? false;
-    if (!shouldScanAll && !hasSrcDirectory(dir)) {
+    const files = selectFiles(dir, shouldScanAll);
+    const unscanned = selectUnscanned(dir, shouldScanAll);
+    const unscannedField = unscanned.length > 0 ? { unscanned } : {};
+    // No code read, no grade. computeGrade([]) is "A", and `--all` over a
+    // directory without code used to report exactly that: a clean result for
+    // code that was never looked at.
+    if (files.length === 0) {
         return {
             skill_id: skillId ?? dir,
             scanned_at: new Date().toISOString(),
             grade: "?",
             findings: [],
             stats: { files_scanned: 0, lines_of_code: 0 },
+            ...unscannedField,
         };
     }
-    const scanDir = shouldScanAll ? dir : (0, node_path_1.join)(dir, "src");
-    const files = collectCodeFiles(scanDir);
     const allFindings = [];
     let totalLines = 0;
     for (const file of files) {
@@ -102,6 +155,7 @@ function scan(dir, skillId, options) {
             files_scanned: files.length,
             lines_of_code: totalLines,
         },
+        ...unscannedField,
     };
 }
 //# sourceMappingURL=scanner.js.map

package/dist/scanner/scanner.js.map

@@ -1 +1 @@
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package/dist/scanner/types.d.ts

@@ -30,5 +30,8 @@ export interface ScanResult {
         files_scanned: number;
         lines_of_code: number;
     };
+    /** Source files in a language V(g) has no rules for (e.g. Rust), relative to
+     * the scanned directory. They were not read: present only when there are any. */
+    unscanned?: string[];
 }
 //# sourceMappingURL=types.d.ts.map

package/dist/scanner/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/scanner/types.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,QAAQ,GAAG,UAAU,GAAG,MAAM,GAAG,QAAQ,CAAC;AACtD,MAAM,MAAM,KAAK,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,CAAC;AAEhD,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB;;;;;OAKG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,OAAO;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,QAAQ,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,KAAK,CAAC;IACb,QAAQ,EAAE,OAAO,EAAE,CAAC;IACpB,KAAK,EAAE;QACL,aAAa,EAAE,MAAM,CAAC;QACtB,aAAa,EAAE,MAAM,CAAC;KACvB,CAAC;IACF;qFACiF;IACjF,SAAS,CAAC,EAAE,MAAM,EAAE,CAAC;CACtB"}

package/dist/testsuite/gate.d.ts

@@ -32,9 +32,12 @@ export interface GateInput {
     run: GeneRunner | null;
 }
 export declare function evaluatePublishGate(input: GateInput): GateVerdict;
-/** Adapter: the sandbox reports every failure alike, so anything that is not a
- * clean return is reported as crashed. See runNegative for why that is the
- * conservative reading rather than a limitation. */
+/** Adapter from the sandbox's result to a RunOutcome, shared by `rotifer test`
+ * and `rotifer publish`. An ADR-334 refusal is a refusal, as on the Node path
+ * (readErrorEnvelope): ADR-334 counts explicit INVALID_INPUT as handling, not a
+ * crash. Every other failure — a trap, a host error code, an L0 block — is
+ * reported as crashed: the caller cannot tell it from a defect. See
+ * runNegative. */
 export declare function outcomeFromSandbox(r: {
     success: boolean;
     output?: unknown;

package/dist/testsuite/gate.d.ts.map

@@ -1 +1 @@
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package/dist/testsuite/gate.js

@@ -86,13 +86,22 @@ function evaluatePublishGate(input) {
         ],
     };
 }
-/** Adapter: the sandbox reports every failure alike, so anything that is not a
- * clean return is reported as crashed. See runNegative for why that is the
- * conservative reading rather than a limitation. */
+/** The prefix the napi binding gives a GeneResult::Error{ INVALID_INPUT }
+ * (`"{code}: {message}"`), which only the ADR-334 envelope produces. */
+const SANDBOX_REFUSAL_PREFIX = "INVALID_INPUT: ";
+/** Adapter from the sandbox's result to a RunOutcome, shared by `rotifer test`
+ * and `rotifer publish`. An ADR-334 refusal is a refusal, as on the Node path
+ * (readErrorEnvelope): ADR-334 counts explicit INVALID_INPUT as handling, not a
+ * crash. Every other failure — a trap, a host error code, an L0 block — is
+ * reported as crashed: the caller cannot tell it from a defect. See
+ * runNegative. */
 function outcomeFromSandbox(r) {
-    return r.success
-        ? { success: true, output: r.output, durationMs: r.durationMs }
-        : { success: false, crashed: true, errorMessage: r.errorMessage ?? undefined };
+    if (r.success)
+        return { success: true, output: r.output, durationMs: r.durationMs };
+    if (r.errorMessage?.startsWith(SANDBOX_REFUSAL_PREFIX)) {
+        return { success: false, errorMessage: r.errorMessage, durationMs: r.durationMs };
+    }
+    return { success: false, crashed: true, errorMessage: r.errorMessage ?? undefined };
 }
 /**
  * Build a GeneRunner for a Wrapped gene, which has no IR and executes in its

package/dist/testsuite/gate.js.map

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package/dist/utils/fidelity-discount.d.ts

@@ -33,6 +33,30 @@ export interface DiscountedFitness {
  * source and no artifact.
  */
 export declare function fidelityDiscountFor(fidelity: string | null | undefined): number;
+/**
+ * The tier a score is entitled to, given what actually ran.
+ *
+ * §5.1 gives Native 1.00 because "pure WASM execution is fully verifiable".
+ * A Gene that declares Native but did not run in the sandbox — no compiled
+ * artifact, no sandbox on this platform, or an estimate that runs nothing at
+ * all — earned none of that: its logic ran under Node.js or did not run. It
+ * takes the Wrapped discount, the tier that makes no claim about execution.
+ * Wrapped keeps its tier: it already claims nothing. Hybrid keeps its declared
+ * tier too, for now. Since ADR-327 a Hybrid gene comes in two shapes — Node.js
+ * behind the network gateway, or its own WASM in the sandbox reaching the
+ * network through `rotifer.net` — and §5.1's 0.85 rests on "the WASM portion
+ * remains verifiable", which a Hybrid that did not run in the sandbox did not
+ * show. Whether that one should drop a tier is not decided yet: `arena submit`
+ * does not run any Hybrid in the sandbox today, so lowering it now would leave
+ * no Hybrid able to earn 0.85.
+ */
+export declare function effectiveFidelity(declared: string | null | undefined, didRunInSandbox: boolean): string;
+/**
+ * F(g) for the listings that estimate from the content hash and run nothing
+ * (`arena watch`, `agent create`). Nothing ran, so a declared Native is
+ * discounted as Wrapped (see effectiveFidelity).
+ */
+export declare function estimateUnexecutedFitness(declared: string | null | undefined, geneId: string): DiscountedFitness;
 /** Apply the discount and return all three numbers the ledger wants. */
 export declare function applyFidelityDiscount(baseFitness: number, fidelity: string | null | undefined): DiscountedFitness;
 /**

package/dist/utils/fidelity-discount.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"fidelity-discount.d.ts","sourceRoot":"","sources":["../../src/utils/fidelity-discount.ts"],"names":[],"mappings":"AAEA;;;;;;;;;;;;;;;;GAgBG;AAEH,MAAM,WAAW,iBAAiB;IAChC,4EAA4E;IAC5E,WAAW,EAAE,MAAM,CAAC;IACpB,+FAA+F;IAC/F,gBAAgB,EAAE,MAAM,CAAC;IACzB,6CAA6C;IAC7C,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;;;;;;;GAQG;AACH,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,GAAG,MAAM,CAG/E;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,EAAE,eAAe,EAAE,OAAO,GAAG,MAAM,CAKvG;AAED;;;;GAIG;AACH,wBAAgB,yBAAyB,CACvC,QAAQ,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,EACnC,MAAM,EAAE,MAAM,GACb,iBAAiB,CAEnB;AAED,wEAAwE;AACxE,wBAAgB,qBAAqB,CACnC,WAAW,EAAE,MAAM,EACnB,QAAQ,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,GAClC,iBAAiB,CAOnB;AAED;;;;;;;;;;GAUG;AACH,eAAO,MAAM,sBAAsB,MAAM,CAAC;AAE1C,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAI1D"}

package/dist/utils/fidelity-discount.js

@@ -2,6 +2,8 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ESTIMATED_BASE_FITNESS = void 0;
 exports.fidelityDiscountFor = fidelityDiscountFor;
+exports.effectiveFidelity = effectiveFidelity;
+exports.estimateUnexecutedFitness = estimateUnexecutedFitness;
 exports.applyFidelityDiscount = applyFidelityDiscount;
 exports.estimateBaseFitness = estimateBaseFitness;
 const phenotype_js_1 = require("../types/phenotype.js");
@@ -18,6 +20,39 @@ function fidelityDiscountFor(fidelity) {
     const key = (fidelity ?? "").trim().toLowerCase();
     return phenotype_js_1.FIDELITY_DISCOUNT[key] ?? phenotype_js_1.FIDELITY_DISCOUNT.wrapped;
 }
+/**
+ * The tier a score is entitled to, given what actually ran.
+ *
+ * §5.1 gives Native 1.00 because "pure WASM execution is fully verifiable".
+ * A Gene that declares Native but did not run in the sandbox — no compiled
+ * artifact, no sandbox on this platform, or an estimate that runs nothing at
+ * all — earned none of that: its logic ran under Node.js or did not run. It
+ * takes the Wrapped discount, the tier that makes no claim about execution.
+ * Wrapped keeps its tier: it already claims nothing. Hybrid keeps its declared
+ * tier too, for now. Since ADR-327 a Hybrid gene comes in two shapes — Node.js
+ * behind the network gateway, or its own WASM in the sandbox reaching the
+ * network through `rotifer.net` — and §5.1's 0.85 rests on "the WASM portion
+ * remains verifiable", which a Hybrid that did not run in the sandbox did not
+ * show. Whether that one should drop a tier is not decided yet: `arena submit`
+ * does not run any Hybrid in the sandbox today, so lowering it now would leave
+ * no Hybrid able to earn 0.85.
+ */
+function effectiveFidelity(declared, didRunInSandbox) {
+    const tier = (declared ?? "").trim();
+    if (!tier)
+        return "Wrapped";
+    if (tier.toLowerCase() === "native" && !didRunInSandbox)
+        return "Wrapped";
+    return tier;
+}
+/**
+ * F(g) for the listings that estimate from the content hash and run nothing
+ * (`arena watch`, `agent create`). Nothing ran, so a declared Native is
+ * discounted as Wrapped (see effectiveFidelity).
+ */
+function estimateUnexecutedFitness(declared, geneId) {
+    return applyFidelityDiscount(estimateBaseFitness(geneId), effectiveFidelity(declared, false));
+}
 /** Apply the discount and return all three numbers the ledger wants. */
 function applyFidelityDiscount(baseFitness, fidelity) {
     const fidelityDiscount = fidelityDiscountFor(fidelity);

package/dist/utils/fidelity-discount.js.map

@@ -1 +1 @@
-{"version":3,"file":"fidelity-discount.js","sourceRoot":"","sources":["../../src/utils/fidelity-discount.ts"],"names":[],"mappings":";;;AAsCA,kDAGC;AAGD,sDAUC;AAeD,kDAIC;AAzED,wDAA0D;AA6B1D;;;;;;;;GAQG;AACH,SAAgB,mBAAmB,CAAC,QAAmC;IACrE,MAAM,GAAG,GAAG,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IAClD,OAAO,gCAAiB,CAAC,GAAG,CAAC,IAAI,gCAAiB,CAAC,OAAO,CAAC;AAC7D,CAAC;AAED,wEAAwE;AACxE,SAAgB,qBAAqB,CACnC,WAAmB,EACnB,QAAmC;IAEnC,MAAM,gBAAgB,GAAG,mBAAmB,CAAC,QAAQ,CAAC,CAAC;IACvD,OAAO;QACL,WAAW;QACX,gBAAgB;QAChB,OAAO,EAAE,WAAW,GAAG,gBAAgB;KACxC,CAAC;AACJ,CAAC;AAED;;;;;;;;;;GAUG;AACU,QAAA,sBAAsB,GAAG,GAAG,CAAC;AAE1C,SAAgB,mBAAmB,CAAC,MAAc;IAChD,MAAM,IAAI,GAAG,QAAQ,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;IAC9C,MAAM,QAAQ,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,GAAG,IAAI,CAAC;IACrC,OAAO,IAAI,CAAC,GAAG,CAAC,8BAAsB,GAAG,QAAQ,EAAE,IAAI,CAAC,CAAC;AAC3D,CAAC"}
+{"version":3,"file":"fidelity-discount.js","sourceRoot":"","sources":["../../src/utils/fidelity-discount.ts"],"names":[],"mappings":";;;AAsCA,kDAGC;AAmBD,8CAKC;AAOD,8DAKC;AAGD,sDAUC;AAeD,kDAIC;AA7GD,wDAA0D;AA6B1D;;;;;;;;GAQG;AACH,SAAgB,mBAAmB,CAAC,QAAmC;IACrE,MAAM,GAAG,GAAG,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IAClD,OAAO,gCAAiB,CAAC,GAAG,CAAC,IAAI,gCAAiB,CAAC,OAAO,CAAC;AAC7D,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,SAAgB,iBAAiB,CAAC,QAAmC,EAAE,eAAwB;IAC7F,MAAM,IAAI,GAAG,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;IACrC,IAAI,CAAC,IAAI;QAAE,OAAO,SAAS,CAAC;IAC5B,IAAI,IAAI,CAAC,WAAW,EAAE,KAAK,QAAQ,IAAI,CAAC,eAAe;QAAE,OAAO,SAAS,CAAC;IAC1E,OAAO,IAAI,CAAC;AACd,CAAC;AAED;;;;GAIG;AACH,SAAgB,yBAAyB,CACvC,QAAmC,EACnC,MAAc;IAEd,OAAO,qBAAqB,CAAC,mBAAmB,CAAC,MAAM,CAAC,EAAE,iBAAiB,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC;AAChG,CAAC;AAED,wEAAwE;AACxE,SAAgB,qBAAqB,CACnC,WAAmB,EACnB,QAAmC;IAEnC,MAAM,gBAAgB,GAAG,mBAAmB,CAAC,QAAQ,CAAC,CAAC;IACvD,OAAO;QACL,WAAW;QACX,gBAAgB;QAChB,OAAO,EAAE,WAAW,GAAG,gBAAgB;KACxC,CAAC;AACJ,CAAC;AAED;;;;;;;;;;GAUG;AACU,QAAA,sBAAsB,GAAG,GAAG,CAAC;AAE1C,SAAgB,mBAAmB,CAAC,MAAc;IAChD,MAAM,IAAI,GAAG,QAAQ,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;IAC9C,MAAM,QAAQ,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,GAAG,IAAI,CAAC;IACrC,OAAO,IAAI,CAAC,GAAG,CAAC,8BAAsB,GAAG,QAAQ,EAAE,IAAI,CAAC,CAAC;AAC3D,CAAC"}

package/dist/utils/javy-compiler.d.ts

@@ -28,6 +28,31 @@ export declare function formatToolchainReport(status: ToolchainStatus, npxPath:
 export declare function buildToolchainErrorMessage(status: ToolchainStatus): string;
 /** True when the gene source has been edited after the WASM was last compiled (#58). */
 export declare function isWasmStale(wasmPath: string, sourcePath: string): boolean;
+/** Outcome of normalizeJavyClockSeed(); the module is unchanged unless "normalized". */
+export interface ClockSeedResult {
+    wasm: Buffer;
+    status: "normalized" | "absent" | "ambiguous";
+}
+/**
+ * Replace the compile-time clock javy bakes into a module with a fixed seed.
+ *
+ * javy 3.0.1 pre-initialises QuickJS and snapshots its heap; QuickJS seeds
+ * Math.random from gettimeofday() while doing so, and that 8-byte microsecond
+ * value lands in the Data section. It was the only difference between two
+ * compiles of the same source, and the v2 gene ID digests every standard
+ * section (ADR-340 D1), so every compile announced a new identity.
+ *
+ * The field is found by value, not by offset: the one little-endian u64 in the
+ * Data section that falls inside `windowUs`, the span javy was running. Exactly
+ * one match is required. None means this javy build does not do it (or does it
+ * differently); two means the guess is not safe. Either way the module is
+ * returned untouched and the caller says so — a wrong overwrite would corrupt
+ * the heap, an unnormalized module only loses reproducibility.
+ *
+ * Math.random was already fixed per artifact (the snapshot holds its state);
+ * this makes it fixed per source as well.
+ */
+export declare function normalizeJavyClockSeed(wasm: Buffer, windowUs: [from: number, to: number], seed: Buffer): ClockSeedResult;
 export interface JavyCompileResult {
     wasmPath: string;
     bundleSize: number;

package/dist/utils/javy-compiler.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"javy-compiler.d.ts","sourceRoot":"","sources":["../../src/utils/javy-compiler.ts"],"names":[],"mappings":"AAKA,wGAAwG;AACxG,qBAAa,iBAAkB,SAAQ,KAAK;IACjC,IAAI,SAAuB;CACrC;AAED,gGAAgG;AAChG,qBAAa,cAAe,SAAQ,KAAK;IAC9B,IAAI,SAAoB;CAClC;AAUD;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAKhE;AAED,KAAK,OAAO,GAAG,MAAM,EAAE,CAAC;AA8BxB,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,GAAG,IAAI,CAAC;IACxB,IAAI,EAAE,OAAO,GAAG,IAAI,CAAC;CACtB;AAED,sEAAsE;AACtE,wBAAgB,kBAAkB,IAAI,eAAe,CAKpD;AAED,wFAAwF;AACxF,0FAA0F;AAC1F,wBAAgB,oBAAoB,IAAI,MAAM,CAQ7C;AAED,qCAAqC;AACrC,wBAAgB,WAAW,CAAC,MAAM,EAAE,eAAe,GAAG,OAAO,CAE5D;AAED,uFAAuF;AACvF,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,eAAe,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAOxF;AAED,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,eAAe,GAAG,MAAM,CAS1E;AAED,wFAAwF;AACxF,wBAAgB,WAAW,CAAC,QAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAOzE;AAcD,MAAM,WAAW,iBAAiB;IAChC,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CACrC,WAAW,EAAE,MAAM,EACnB,cAAc,EAAE,MAAM,GACrB,iBAAiB,CA6DnB;AAED;;GAEG;AACH,wBAAgB,eAAe,IAAI,OAAO,CAEzC;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAM7D"}
+{"version":3,"file":"javy-compiler.d.ts","sourceRoot":"","sources":["../../src/utils/javy-compiler.ts"],"names":[],"mappings":"AAMA,wGAAwG;AACxG,qBAAa,iBAAkB,SAAQ,KAAK;IACjC,IAAI,SAAuB;CACrC;AAED,gGAAgG;AAChG,qBAAa,cAAe,SAAQ,KAAK;IAC9B,IAAI,SAAoB;CAClC;AAUD;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAKhE;AAED,KAAK,OAAO,GAAG,MAAM,EAAE,CAAC;AA8BxB,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,GAAG,IAAI,CAAC;IACxB,IAAI,EAAE,OAAO,GAAG,IAAI,CAAC;CACtB;AAED,sEAAsE;AACtE,wBAAgB,kBAAkB,IAAI,eAAe,CAKpD;AAED,wFAAwF;AACxF,0FAA0F;AAC1F,wBAAgB,oBAAoB,IAAI,MAAM,CAQ7C;AAED,qCAAqC;AACrC,wBAAgB,WAAW,CAAC,MAAM,EAAE,eAAe,GAAG,OAAO,CAE5D;AAED,uFAAuF;AACvF,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,eAAe,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAOxF;AAED,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,eAAe,GAAG,MAAM,CAS1E;AAED,wFAAwF;AACxF,wBAAgB,WAAW,CAAC,QAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAOzE;AAED,wFAAwF;AACxF,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,YAAY,GAAG,QAAQ,GAAG,WAAW,CAAC;CAC/C;AA4BD;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,sBAAsB,CACpC,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,CAAC,EACpC,IAAI,EAAE,MAAM,GACX,eAAe,CAcjB;AAqBD,MAAM,WAAW,iBAAiB;IAChC,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CACrC,WAAW,EAAE,MAAM,EACnB,cAAc,EAAE,MAAM,GACrB,iBAAiB,CA8EnB;AAED;;GAEG;AACH,wBAAgB,eAAe,IAAI,OAAO,CAEzC;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAM7D"}

package/dist/utils/javy-compiler.js

@@ -41,10 +41,12 @@ exports.toolchainOk = toolchainOk;
 exports.formatToolchainReport = formatToolchainReport;
 exports.buildToolchainErrorMessage = buildToolchainErrorMessage;
 exports.isWasmStale = isWasmStale;
+exports.normalizeJavyClockSeed = normalizeJavyClockSeed;
 exports.compileTypeScriptToWasm = compileTypeScriptToWasm;
 exports.isJavyAvailable = isJavyAvailable;
 exports.findGeneSource = findGeneSource;
 const node_child_process_1 = require("node:child_process");
+const node_crypto_1 = require("node:crypto");
 const node_fs_1 = require("node:fs");
 const node_path_1 = require("node:path");
 const display = __importStar(require("./display.js"));
@@ -156,6 +158,76 @@ function isWasmStale(wasmPath, sourcePath) {
         return false;
     }
 }
+const WASM_SECTION_DATA = 11;
+function readLeb128(buf, offset) {
+    let value = 0;
+    let shift = 0;
+    let at = offset;
+    for (;;) {
+        const byte = buf[at++];
+        value += (byte & 0x7f) * 2 ** shift;
+        shift += 7;
+        if (!(byte & 0x80))
+            return [value, at];
+    }
+}
+/** Byte range of the Data section's contents, or null if the module has none. */
+function dataSectionRange(wasm) {
+    let at = 8; // magic + version
+    while (at < wasm.length) {
+        const id = wasm[at];
+        const [size, bodyStart] = readLeb128(wasm, at + 1);
+        if (id === WASM_SECTION_DATA)
+            return [bodyStart, bodyStart + size];
+        at = bodyStart + size;
+    }
+    return null;
+}
+/**
+ * Replace the compile-time clock javy bakes into a module with a fixed seed.
+ *
+ * javy 3.0.1 pre-initialises QuickJS and snapshots its heap; QuickJS seeds
+ * Math.random from gettimeofday() while doing so, and that 8-byte microsecond
+ * value lands in the Data section. It was the only difference between two
+ * compiles of the same source, and the v2 gene ID digests every standard
+ * section (ADR-340 D1), so every compile announced a new identity.
+ *
+ * The field is found by value, not by offset: the one little-endian u64 in the
+ * Data section that falls inside `windowUs`, the span javy was running. Exactly
+ * one match is required. None means this javy build does not do it (or does it
+ * differently); two means the guess is not safe. Either way the module is
+ * returned untouched and the caller says so — a wrong overwrite would corrupt
+ * the heap, an unnormalized module only loses reproducibility.
+ *
+ * Math.random was already fixed per artifact (the snapshot holds its state);
+ * this makes it fixed per source as well.
+ */
+function normalizeJavyClockSeed(wasm, windowUs, seed) {
+    const range = dataSectionRange(wasm);
+    if (!range)
+        return { wasm, status: "absent" };
+    const [from, to] = [BigInt(Math.floor(windowUs[0])), BigInt(Math.ceil(windowUs[1]))];
+    const hits = [];
+    for (let at = range[0]; at + 8 <= range[1]; at++) {
+        const value = wasm.readBigUInt64LE(at);
+        if (value >= from && value <= to)
+            hits.push(at);
+    }
+    if (hits.length === 0)
+        return { wasm, status: "absent" };
+    if (hits.length > 1)
+        return { wasm, status: "ambiguous" };
+    const out = Buffer.from(wasm);
+    seed.copy(out, hits[0], 0, 8);
+    return { wasm: out, status: "normalized" };
+}
+/** A non-zero 8-byte seed derived from the compiled source (xorshift state must not be 0). */
+function seedFromSource(source) {
+    const seed = (0, node_crypto_1.createHash)("sha256").update(source).digest().subarray(0, 8);
+    if (seed.every((b) => b === 0))
+        seed[0] = 1;
+    return seed;
+}
 const WASI_SHIM_HEADER = `\
 function __readStdin(){var s=1024,c=[],t=0;while(1){var b=new Uint8Array(s);var r=Javy.IO.readSync(0,b);t+=r;if(r===0)break;c.push(b.subarray(0,r))}var o=new Uint8Array(t);var p=0;for(var i=0;i<c.length;i++){o.set(c[i],p);p+=c[i].length}return JSON.parse(new TextDecoder().decode(o))}
 function __writeStdout(v){var b=new TextEncoder().encode(JSON.stringify(v));Javy.IO.writeSync(1,b)}
@@ -205,10 +277,21 @@ function compileTypeScriptToWasm(geneSrcPath, outputWasmPath) {
         const shimCode = WASI_SHIM_HEADER + bundleCode + "\n" + WASI_SHIM_FOOTER;
         (0, node_fs_1.writeFileSync)(shimPath, shimCode);
         display.info("  Step 3/3: JavaScript → WASM (Javy / QuickJS)");
+        const javyStartedMs = Date.now();
         (0, node_child_process_1.execFileSync)(toolchain.javy[0], [
             ...toolchain.javy.slice(1), "compile", shimPath, "-o", outputWasmPath,
         ], { stdio: "pipe", timeout: 60_000 });
-        const wasmSize = (0, node_fs_1.readFileSync)(outputWasmPath).length;
+        const javyEndedMs = Date.now();
+        // Same source, same bytes: take javy's compile-time clock out (T-95).
+        const seeded = normalizeJavyClockSeed((0, node_fs_1.readFileSync)(outputWasmPath), [(javyStartedMs - 1_000) * 1_000, (javyEndedMs + 1_000) * 1_000], seedFromSource(shimCode));
+        if (seeded.status === "normalized") {
+            (0, node_fs_1.writeFileSync)(outputWasmPath, seeded.wasm);
+        }
+        else {
+            display.warn(`    This javy build's output is not reproducible (${seeded.status === "ambiguous" ? "more than one" : "no"} ` +
+                "compile-time clock value found): compiling this gene again will give different bytes and a different v2 gene ID.");
+        }
+        const wasmSize = seeded.wasm.length;
         const durationMs = Date.now() - startTime;
         display.success(`  WASM compiled: ${(wasmSize / 1024).toFixed(0)} KB (${durationMs}ms)`);
         return { wasmPath: outputWasmPath, bundleSize, wasmSize, durationMs };

package/dist/utils/javy-compiler.js.map

@@ -1 +1 @@
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