@rotifer/playground 0.27.0 → 0.28.0

package/dist/commands/install.d.ts

@@ -1,3 +1,57 @@
 import { Command } from "commander";
+import type { CloudGene } from "../cloud/types.js";
+/** The gene is already installed and `force` was not set. */
+export declare class GeneExistsError extends Error {
+    readonly geneName: string;
+    readonly geneDir: string;
+    constructor(geneName: string, geneDir: string);
+}
+/** The downloaded WASM does not match the size or hash the Registry recorded. */
+export declare class WasmIntegrityError extends Error {
+    constructor(message: string);
+}
+/**
+ * Whether a Registry row's phenotype and its recorded content_hash (the v1,
+ * client-defined hash) agree. Both come from the same row in the same
+ * response, so agreement says nothing about whether the content can be relied
+ * on — anyone able to change one can change the other, and some edits (a
+ * `__proto__` key) do not move the hash at all. Disagreement does say
+ * something: storage damage, a hash edited after publication, or one of the
+ * early-2026 rows known to differ.
+ */
+export type ContentHashCheck = {
+    status: "match";
+} | {
+    status: "mismatch";
+    recorded: string;
+    recomputed: string;
+} | {
+    status: "absent";
+};
+export declare function checkContentHash(gene: Pick<CloudGene, "phenotype" | "content_hash">): ContentHashCheck;
+/** The one-line notice for a mismatch. Deliberately makes no claim about trust. */
+export declare function contentHashWarning(geneName: string, check: ContentHashCheck): string | null;
+export interface InstallFromCloudOptions {
+    /** Absolute path of the workspace's genes directory. */
+    genesDir: string;
+    force?: boolean;
+    /** Print progress the way `rotifer install` does. */
+    isVerbose?: boolean;
+    /** Called once the gene's metadata has been fetched. */
+    onFetched?: (gene: CloudGene) => void;
+}
+export interface InstalledGene {
+    gene: CloudGene;
+    geneDir: string;
+    didSnapshot: boolean;
+    contentHashCheck: ContentHashCheck;
+}
+/**
+ * Install one gene from the Registry: phenotype.json, the WASM (size and
+ * SHA-256 checked against the Registry row), and `.cloud-manifest.json`.
+ * Counts the download, as every install does. Throws on any failure; nothing
+ * is printed unless `isVerbose`.
+ */
+export declare function installGeneFromCloud(geneRef: string, options: InstallFromCloudOptions): Promise<InstalledGene>;
 export declare const installCommand: Command;
 //# sourceMappingURL=install.d.ts.map

package/dist/commands/install.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"install.d.ts","sourceRoot":"","sources":["../../src/commands/install.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAYpC,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAOnD,6DAA6D;AAC7D,qBAAa,eAAgB,SAAQ,KAAK;IAC5B,QAAQ,CAAC,QAAQ,EAAE,MAAM;IAAE,QAAQ,CAAC,OAAO,EAAE,MAAM;gBAA1C,QAAQ,EAAE,MAAM,EAAW,OAAO,EAAE,MAAM;CAIhE;AAED,iFAAiF;AACjF,qBAAa,kBAAmB,SAAQ,KAAK;gBAC/B,OAAO,EAAE,MAAM;CAI5B;AAED;;;;;;;;GAQG;AACH,MAAM,MAAM,gBAAgB,GACxB;IAAE,MAAM,EAAE,OAAO,CAAA;CAAE,GACnB;IAAE,MAAM,EAAE,UAAU,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,MAAM,CAAA;CAAE,GAC5D;IAAE,MAAM,EAAE,QAAQ,CAAA;CAAE,CAAC;AAEzB,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,IAAI,CAAC,SAAS,EAAE,WAAW,GAAG,cAAc,CAAC,GAAG,gBAAgB,CAMtG;AAED,mFAAmF;AACnF,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,gBAAgB,GAAG,MAAM,GAAG,IAAI,CAO3F;AAED,MAAM,WAAW,uBAAuB;IACtC,wDAAwD;IACxD,QAAQ,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,qDAAqD;IACrD,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,wDAAwD;IACxD,SAAS,CAAC,EAAE,CAAC,IAAI,EAAE,SAAS,KAAK,IAAI,CAAC;CACvC;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,SAAS,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,EAAE,OAAO,CAAC;IACrB,gBAAgB,EAAE,gBAAgB,CAAC;CACpC;AAED;;;;;GAKG;AACH,wBAAsB,oBAAoB,CACxC,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,uBAAuB,GAC/B,OAAO,CAAC,aAAa,CAAC,CAyGxB;AAED,eAAO,MAAM,cAAc,SAwDvB,CAAC"}

package/dist/commands/install.js

@@ -33,7 +33,10 @@ var __importStar = (this && this.__importStar) || (function () {
     };
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.installCommand = void 0;
+exports.installCommand = exports.WasmIntegrityError = exports.GeneExistsError = void 0;
+exports.checkContentHash = checkContentHash;
+exports.contentHashWarning = contentHashWarning;
+exports.installGeneFromCloud = installGeneFromCloud;
 const commander_1 = require("commander");
 const node_fs_1 = require("node:fs");
 const node_path_1 = require("node:path");
@@ -46,6 +49,131 @@ const domain_suggest_js_1 = require("../utils/domain-suggest.js");
 const validate_gene_name_js_1 = require("../utils/validate-gene-name.js");
 const gene_snapshots_js_1 = require("../utils/gene-snapshots.js");
 const artifact_consistency_js_1 = require("../utils/artifact-consistency.js");
+const content_hash_js_1 = require("../utils/content-hash.js");
+/** The gene is already installed and `force` was not set. */
+class GeneExistsError extends Error {
+    geneName;
+    geneDir;
+    constructor(geneName, geneDir) {
+        super(`Gene '${geneName}' already exists locally`);
+        this.geneName = geneName;
+        this.geneDir = geneDir;
+        this.name = "GeneExistsError";
+    }
+}
+exports.GeneExistsError = GeneExistsError;
+/** The downloaded WASM does not match the size or hash the Registry recorded. */
+class WasmIntegrityError extends Error {
+    constructor(message) {
+        super(message);
+        this.name = "WasmIntegrityError";
+    }
+}
+exports.WasmIntegrityError = WasmIntegrityError;
+function checkContentHash(gene) {
+    if (!gene.content_hash)
+        return { status: "absent" };
+    const recomputed = (0, content_hash_js_1.contentHash)(gene.phenotype ?? {});
+    return recomputed === gene.content_hash
+        ? { status: "match" }
+        : { status: "mismatch", recorded: gene.content_hash, recomputed };
+}
+/** The one-line notice for a mismatch. Deliberately makes no claim about trust. */
+function contentHashWarning(geneName, check) {
+    if (check.status !== "mismatch")
+        return null;
+    return (`Gene '${geneName}': its phenotype does not match the content_hash recorded in the Registry ` +
+        `(recorded ${check.recorded.slice(0, 12)}…, recomputed ${check.recomputed.slice(0, 12)}…). ` +
+        "This comparison can only show that the two disagree; a match would not show the content can be relied on.");
+}
+/**
+ * Install one gene from the Registry: phenotype.json, the WASM (size and
+ * SHA-256 checked against the Registry row), and `.cloud-manifest.json`.
+ * Counts the download, as every install does. Throws on any failure; nothing
+ * is printed unless `isVerbose`.
+ */
+async function installGeneFromCloud(geneRef, options) {
+    const isVerbose = options.isVerbose ?? false;
+    const gene = await (0, client_js_1.getGene)(geneRef);
+    options.onFetched?.(gene);
+    (0, validate_gene_name_js_1.validateGeneName)(gene.name);
+    const geneDir = (0, node_path_1.join)(options.genesDir, gene.name);
+    if ((0, node_fs_1.existsSync)(geneDir) && !options.force) {
+        throw new GeneExistsError(gene.name, geneDir);
+    }
+    // Move the old copy aside before writing over it — this is what makes
+    // --force reversible. If it fails, nothing is installed: an overwrite the
+    // user believes is undoable and is not would be worse than no install.
+    let didSnapshot = false;
+    if ((0, node_fs_1.existsSync)(geneDir) && options.force) {
+        (0, gene_snapshots_js_1.snapshotGene)(options.genesDir, gene.name, gene.id ?? null);
+        didSnapshot = true;
+    }
+    (0, node_fs_1.mkdirSync)(geneDir, { recursive: true });
+    (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, "phenotype.json"), JSON.stringify(gene.phenotype, null, 2) + "\n");
+    if (isVerbose)
+        display.success("Phenotype saved");
+    // Consistency only: a mismatch warns and the install carries on (exit code 0).
+    const contentHashCheck = checkContentHash(gene);
+    if (isVerbose) {
+        const warning = contentHashWarning(gene.name, contentHashCheck);
+        if (warning)
+            display.warn(warning);
+        else if (contentHashCheck.status === "absent")
+            display.hint("No content_hash is recorded for this version; nothing to compare.");
+    }
+    if (gene.wasm_url) {
+        const ws = isVerbose ? display.spinner("Downloading WASM binary...") : null;
+        const wasmBytes = await (0, client_js_1.downloadGeneWasm)(gene.wasm_url);
+        ws?.stop();
+        if (gene.wasm_size && wasmBytes.length !== gene.wasm_size) {
+            throw new WasmIntegrityError(`WASM size mismatch: expected ${gene.wasm_size} bytes, got ${wasmBytes.length}. ` +
+                `Download may be corrupted or tampered with.`);
+        }
+        if (gene.wasm_hash) {
+            const downloadHash = (0, node_crypto_1.createHash)("sha256")
+                .update(wasmBytes)
+                .digest("hex");
+            if (downloadHash !== gene.wasm_hash) {
+                throw new WasmIntegrityError(`WASM integrity check failed: hash mismatch.\n` +
+                    `  Expected: ${gene.wasm_hash}\n` +
+                    `  Got:      ${downloadHash}\n` +
+                    `Download may be corrupted or tampered with.`);
+            }
+            if (isVerbose)
+                display.success("WASM integrity verified (SHA-256)");
+        }
+        (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, "gene.ir.wasm"), wasmBytes);
+        if (isVerbose) {
+            display.success(`WASM downloaded (${(wasmBytes.length / 1024).toFixed(1)}KB)`);
+        }
+    }
+    else if (isVerbose) {
+        // There was no else branch here, so a Gene declaring Native with no
+        // artifact installed in silence and then reported "Fidelity: Native".
+        // Running it fails, and nothing had told the user why — leaving them to
+        // debug a setup that was never the problem.
+        const verdict = (0, artifact_consistency_js_1.checkNativeArtifact)({
+            geneName: gene.name,
+            fidelity: gene.phenotype?.fidelity,
+            hasArtifact: false,
+            hasSource: false,
+        });
+        if (verdict.status === "native-without-artifact") {
+            display.warn(verdict.message);
+            for (const line of verdict.hint)
+                display.hint(line);
+        }
+    }
+    (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, ".cloud-manifest.json"), JSON.stringify({
+        cloud_id: gene.id,
+        owner: gene.owner,
+        version: gene.version,
+        installed_at: new Date().toISOString(),
+    }, null, 2) + "\n");
+    (0, client_js_1.trackDownload)(gene.id, "cli").catch(() => { });
+    return { gene, geneDir, didSnapshot, contentHashCheck };
+}
 exports.installCommand = new commander_1.Command("install")
     .description("Install a gene from Rotifer Cloud")
     .argument("<gene-ref>", "gene UUID, name, or content hash")
@@ -56,79 +184,12 @@ exports.installCommand = new commander_1.Command("install")
     const config = (0, config_js_1.loadConfig)(root);
     const s = display.spinner("Fetching gene metadata...");
     try {
-        const gene = await (0, client_js_1.getGene)(geneRef);
-        s.stop();
-        (0, validate_gene_name_js_1.validateGeneName)(gene.name);
-        const genesDir = (0, node_path_1.join)(root, config.genes_dir);
-        const geneDir = (0, node_path_1.join)(genesDir, gene.name);
-        if ((0, node_fs_1.existsSync)(geneDir) && !options.force) {
-            display.rustStyleError({
-                code: "E0051",
-                message: `Gene '${gene.name}' already exists locally`,
-                file: geneDir,
-                suggestion: "Use --force to overwrite, or rename the existing gene",
-            });
-            process.exit(1);
-        }
-        // Move the old copy aside before writing over it — this is what makes
-        // --force reversible. If it fails, nothing is installed: an overwrite the
-        // user believes is undoable and is not would be worse than no install.
-        let didSnapshot = false;
-        if ((0, node_fs_1.existsSync)(geneDir) && options.force) {
-            (0, gene_snapshots_js_1.snapshotGene)(genesDir, gene.name, gene.id ?? null);
-            didSnapshot = true;
-        }
-        (0, node_fs_1.mkdirSync)(geneDir, { recursive: true });
-        (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, "phenotype.json"), JSON.stringify(gene.phenotype, null, 2) + "\n");
-        display.success("Phenotype saved");
-        if (gene.wasm_url) {
-            const ws = display.spinner("Downloading WASM binary...");
-            const wasmBytes = await (0, client_js_1.downloadGeneWasm)(gene.wasm_url);
-            ws.stop();
-            if (gene.wasm_size && wasmBytes.length !== gene.wasm_size) {
-                display.error(`WASM size mismatch: expected ${gene.wasm_size} bytes, got ${wasmBytes.length}. ` +
-                    `Download may be corrupted or tampered with.`);
-                process.exit(1);
-            }
-            if (gene.wasm_hash) {
-                const downloadHash = (0, node_crypto_1.createHash)("sha256")
-                    .update(wasmBytes)
-                    .digest("hex");
-                if (downloadHash !== gene.wasm_hash) {
-                    display.error(`WASM integrity check failed: hash mismatch.\n` +
-                        `  Expected: ${gene.wasm_hash}\n` +
-                        `  Got:      ${downloadHash}\n` +
-                        `Download may be corrupted or tampered with.`);
-                    process.exit(1);
-                }
-                display.success("WASM integrity verified (SHA-256)");
-            }
-            (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, "gene.ir.wasm"), wasmBytes);
-            display.success(`WASM downloaded (${(wasmBytes.length / 1024).toFixed(1)}KB)`);
-        }
-        else {
-            // There was no else branch here, so a Gene declaring Native with no
-            // artifact installed in silence and then reported "Fidelity: Native".
-            // Running it fails, and nothing had told the user why — leaving them to
-            // debug a setup that was never the problem.
-            const verdict = (0, artifact_consistency_js_1.checkNativeArtifact)({
-                geneName: gene.name,
-                fidelity: gene.phenotype?.fidelity,
-                hasArtifact: false,
-                hasSource: false,
-            });
-            if (verdict.status === "native-without-artifact") {
-                display.warn(verdict.message);
-                for (const line of verdict.hint)
-                    display.hint(line);
-            }
-        }
-        (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, ".cloud-manifest.json"), JSON.stringify({
-            cloud_id: gene.id,
-            owner: gene.owner,
-            version: gene.version,
-            installed_at: new Date().toISOString(),
-        }, null, 2) + "\n");
+        const { gene, geneDir, didSnapshot } = await installGeneFromCloud(geneRef, {
+            genesDir: (0, node_path_1.join)(root, config.genes_dir),
+            force: options.force,
+            isVerbose: true,
+            onFetched: () => s.stop(),
+        });
         console.log();
         display.success(`Gene '${gene.name}' installed!`);
         display.keyValue("From", `${gene.owner}/${gene.name}@${gene.version}`);
@@ -143,11 +204,23 @@ exports.installCommand = new commander_1.Command("install")
         }
         display.hint("Test it: rotifer test " + gene.name);
         display.hint("Submit to local Arena: rotifer arena submit " + gene.name);
-        (0, client_js_1.trackDownload)(gene.id, "cli").catch(() => { });
         (0, domain_suggest_js_1.refreshDomainCacheFromCloud)().catch(() => { });
     }
     catch (err) {
         s.stop();
+        if (err instanceof GeneExistsError) {
+            display.rustStyleError({
+                code: "E0051",
+                message: err.message,
+                file: err.geneDir,
+                suggestion: "Use --force to overwrite, or rename the existing gene",
+            });
+            process.exit(1);
+        }
+        if (err instanceof WasmIntegrityError) {
+            display.error(err.message);
+            process.exit(1);
+        }
         display.error(err.message || "Install failed");
         display.hint("Check the gene name/ID and try again, or run 'rotifer search' to find genes.");
         process.exit(1);

package/dist/commands/install.js.map

@@ -1 +1 @@
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package/dist/commands/publish.js

@@ -50,11 +50,11 @@ const content_hash_js_1 = require("../utils/content-hash.js");
 const pre_publish_check_js_1 = require("../publish/pre-publish-check.js");
 const detect_source_language_js_1 = require("../utils/detect-source-language.js");
 const badge_js_1 = require("../cloud/badge.js");
+const rules_js_1 = require("../scanner/rules.js");
 const gate_js_1 = require("../testsuite/gate.js");
 const l0_gate_js_1 = require("../utils/l0-gate.js");
 const binding_js_1 = require("../utils/binding.js");
 const run_fuel_ladder_js_1 = require("../utils/run-fuel-ladder.js");
-const VG_SCANNER_VERSION = "0.8.0";
 function formatCheckIcon(status) {
     if (status === "pass")
         return palette_js_1.c.success(palette_js_1.icon.success);
@@ -283,7 +283,7 @@ async function tryUploadVgBadge(geneUuid, scanResult, options, isQuiet) {
         return;
     }
     const payload = action.mode === "skipped" ? null : scanResult;
-    const r = await (0, badge_js_1.uploadSafetyBadge)(geneUuid, payload, VG_SCANNER_VERSION, action.mode, token);
+    const r = await (0, badge_js_1.uploadSafetyBadge)(geneUuid, payload, rules_js_1.SCANNER_VERSION, action.mode, token);
     if (!isQuiet) {
         if (r.ok) {
             const detail = action.mode === "skipped" ? "skipped" : `grade ${payload?.grade ?? "?"}`;

package/dist/commands/publish.js.map

@@ -1 +1 @@
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package/dist/commands/vg.js

@@ -83,7 +83,7 @@ exports.vgCommand = new commander_1.Command("vg")
     const dir = (0, node_path_1.resolve)(pathArg);
     const result = (0, index_js_1.scan)(dir, opts.id, { scanAll: opts.all });
     if (opts.publish && display.isJsonMode() && result.grade !== "?" && opts.id) {
-        await publishSafety(opts.id, result, "0.8.0");
+        await publishSafety(opts.id, result, index_js_1.SCANNER_VERSION);
     }
     display.renderResult(result, (data) => {
         display.header("V(g) Security Scan");
@@ -133,7 +133,7 @@ exports.vgCommand = new commander_1.Command("vg")
             }
             else {
                 console.log();
-                publishSafety(opts.id, result, "0.8.0");
+                publishSafety(opts.id, result, index_js_1.SCANNER_VERSION);
             }
         }
         console.log();

package/dist/commands/vg.js.map

@@ -1 +1 @@
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+{"version":3,"file":"vg.js","sourceRoot":"","sources":["../../src/commands/vg.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,yCAAoC;AACpC,yCAAwD;AACxD,6DAA+C;AAC/C,oDAAwC;AACxC,kDAA4D;AAE5D,gDAAsD;AAEtD,MAAM,YAAY,GAA0C;IAC1D,CAAC,EAAE,cAAC,CAAC,OAAO;IACZ,CAAC,EAAE,cAAC,CAAC,YAAY;IACjB,CAAC,EAAE,cAAC,CAAC,IAAI;IACT,CAAC,EAAE,cAAC,CAAC,KAAK;IACV,GAAG,EAAE,cAAC,CAAC,KAAK;CACb,CAAC;AAEF,MAAM,eAAe,GAA0C;IAC7D,QAAQ,EAAE,cAAC,CAAC,KAAK,CAAC,IAAI;IACtB,IAAI,EAAE,cAAC,CAAC,IAAI;IACZ,MAAM,EAAE,cAAC,CAAC,KAAK;CAChB,CAAC;AAEF,SAAS,YAAY,CAAC,CAAU;IAC9B,MAAM,GAAG,GAAG,eAAe,CAAC,CAAC,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC;IACpE,MAAM,GAAG,GAAG,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;IAC3C,OAAO,CAAC,GAAG,CAAC,KAAK,GAAG,KAAK,CAAC,CAAC,IAAI,KAAK,GAAG,EAAE,CAAC,CAAC;IAC3C,OAAO,CAAC,GAAG,CAAC,OAAO,cAAC,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;AAC3C,CAAC;AAED,KAAK,UAAU,aAAa,CAC1B,MAAc,EACd,MAAkB,EAClB,cAAsB;IAEtB,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC;IAC9C,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,CAAC,IAAI,CAAC,gDAAgD,CAAC,CAAC;QAC/D,OAAO;IACT,CAAC;IAED,MAAM,CAAC,GAAG,MAAM,IAAA,4BAAiB,EAAC,MAAM,EAAE,MAAM,EAAE,cAAc,EAAE,eAAe,EAAE,KAAK,CAAC,CAAC;IAC1F,IAAI,CAAC,CAAC,EAAE,EAAE,CAAC;QACT,OAAO,CAAC,OAAO,CAAC,gBAAgB,MAAM,CAAC,KAAK,iDAAiD,CAAC,CAAC;IACjG,CAAC;SAAM,CAAC;QACN,MAAM,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,MAAM,IAAI,CAAC,CAAC,KAAK,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC;QAC3E,OAAO,CAAC,IAAI,CAAC,mCAAmC,MAAM,EAAE,CAAC,CAAC;IAC5D,CAAC;AACH,CAAC;AAEY,QAAA,SAAS,GAAG,IAAI,mBAAO,CAAC,IAAI,CAAC;KACvC,WAAW,CAAC,yCAAyC,CAAC;KACtD,QAAQ,CAAC,QAAQ,EAAE,iCAAiC,EAAE,GAAG,CAAC;KAC1D,MAAM,CAAC,iBAAiB,EAAE,sCAAsC,CAAC;KACjE,MAAM,CAAC,OAAO,EAAE,oCAAoC,CAAC;KACrD,MAAM,CAAC,WAAW,EAAE,0EAA0E,CAAC;KAC/F,MAAM,CAAC,KAAK,EAAE,OAAe,EAAE,IAAuD,EAAE,EAAE;IACzF,MAAM,GAAG,GAAG,IAAA,mBAAO,EAAC,OAAO,CAAC,CAAC;IAC7B,MAAM,MAAM,GAAG,IAAA,eAAI,EAAC,GAAG,EAAE,IAAI,CAAC,EAAE,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC;IAEzD,IAAI,IAAI,CAAC,OAAO,IAAI,OAAO,CAAC,UAAU,EAAE,IAAI,MAAM,CAAC,KAAK,KAAK,GAAG,IAAI,IAAI,CAAC,EAAE,EAAE,CAAC;QAC5E,MAAM,aAAa,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,EAAE,0BAAe,CAAC,CAAC;IACxD,CAAC;IAED,OAAO,CAAC,YAAY,CAAC,MAAM,EAAE,CAAC,IAAI,EAAE,EAAE;QACpC,OAAO,CAAC,MAAM,CAAC,oBAAoB,CAAC,CAAC;QAErC,IAAI,IAAI,CAAC,KAAK,KAAK,GAAG,EAAE,CAAC;YACvB,OAAO,CAAC,IAAI,CAAC,oCAAoC,cAAC,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YACjE,OAAO,CAAC,IAAI,CAAC,sDAAsD,CAAC,CAAC;YACrE,OAAO;QACT,CAAC;QAED,MAAM,UAAU,GAAG,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,cAAC,CAAC,MAAM,CAAC;QACxD,MAAM,GAAG,GAAG,IAAA,oBAAQ,EAAC,OAAO,CAAC,GAAG,EAAE,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;QACnD,MAAM,WAAW,GAAG,GAAG,KAAK,EAAE,CAAC,CAAC,CAAC,IAAA,oBAAQ,EAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE,CAAC,CAAC;QAC/G,OAAO,CAAC,EAAE,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QAChC,OAAO,CAAC,EAAE,CAAC,eAAe,EAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;QAC9D,OAAO,CAAC,EAAE,CAAC,eAAe,EAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;QAC9D,OAAO,CAAC,EAAE,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;QAE5C,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC/B,OAAO,CAAC,GAAG,EAAE,CAAC;YACd,OAAO,CAAC,OAAO,CAAC,gCAAgC,CAAC,CAAC;QACpD,CAAC;aAAM,CAAC;YACN,MAAM,SAAS,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAU,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,UAAU,CAAC,CAAC;YAClF,MAAM,KAAK,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAU,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,MAAM,CAAC,CAAC;YAC1E,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAU,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAC;YAE9E,MAAM,KAAK,GAAG;gBACZ,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,cAAC,CAAC,KAAK,CAAC,IAAI,CAAC,aAAa,SAAS,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,aAAa;gBACpF,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,cAAC,CAAC,IAAI,CAAC,SAAS,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;gBAC9D,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,cAAC,CAAC,KAAK,CAAC,WAAW,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,WAAW;aACxE,CAAC;YACF,OAAO,CAAC,EAAE,CAAC,UAAU,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;YACzC,OAAO,CAAC,GAAG,EAAE,CAAC;YAEd,IAAI,SAAS,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACzB,OAAO,CAAC,GAAG,CAAC,cAAC,CAAC,KAAK,CAAC,IAAI,CAAC,eAAe,SAAS,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC;gBAC/D,SAAS,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;YAClC,CAAC;YACD,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACrB,OAAO,CAAC,GAAG,CAAC,cAAC,CAAC,IAAI,CAAC,WAAW,KAAK,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC;gBACjD,KAAK,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;YAC9B,CAAC;YACD,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACvB,OAAO,CAAC,GAAG,CAAC,cAAC,CAAC,KAAK,CAAC,aAAa,OAAO,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC;gBACtD,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;YAChC,CAAC;QACH,CAAC;QAED,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YACjB,IAAI,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC;gBACb,OAAO,CAAC,IAAI,CAAC,0DAA0D,CAAC,CAAC;YAC3E,CAAC;iBAAM,CAAC;gBACN,OAAO,CAAC,GAAG,EAAE,CAAC;gBACd,aAAa,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,EAAE,0BAAe,CAAC,CAAC;YAClD,CAAC;QACH,CAA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package/dist/index.js

@@ -17,6 +17,8 @@ const arena_audit_js_1 = require("./commands/arena-audit.js");
 const agent_create_js_1 = require("./commands/agent-create.js");
 const agent_list_js_1 = require("./commands/agent-list.js");
 const agent_run_js_1 = require("./commands/agent-run.js");
+const genome_js_1 = require("./commands/genome.js");
+const genome_import_js_1 = require("./commands/genome-import.js");
 const login_js_1 = require("./commands/login.js");
 const logout_js_1 = require("./commands/logout.js");
 const publish_js_1 = require("./commands/publish.js");
@@ -99,6 +101,8 @@ const agent = program.command("agent").description("Agent lifecycle commands");
 agent.addCommand(agent_create_js_1.agentCreateCommand);
 agent.addCommand(agent_list_js_1.agentListCommand);
 agent.addCommand(agent_run_js_1.agentRunCommand);
+genome_js_1.genomeCommand.addCommand(genome_import_js_1.genomeImportCommand);
+program.addCommand(genome_js_1.genomeCommand);
 program.addCommand(hello_js_1.helloCommand);
 program.addCommand(network_js_1.networkCommand);
 program.addCommand(telemetry_js_1.telemetryCommand);

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/publish/pre-publish-check.d.ts

@@ -11,5 +11,20 @@ export interface PrePublishResult {
     blocking: CheckItem[];
     scanResult: ScanResult | null;
 }
+/**
+ * Credential formats recognisable by their own prefix or framing. Shared by the
+ * publish check (every source file of a gene) and the Genome Blueprint export
+ * scan (every key and string of the file), so a format added here guards both.
+ *
+ * Bare key shapes — 64 hex characters, unframed Base64 of 32/64 bytes — are
+ * deliberately NOT here: gene source routinely carries sha256 constants and
+ * fixtures, so matching them would fail publishes that are fine today. The
+ * Blueprint scan adds those rules on its own, where it can exempt the fields
+ * that legitimately hold a hash (src/commands/genome.ts).
+ */
+export declare const SENSITIVE_PATTERNS: ReadonlyArray<{
+    label: string;
+    pattern: RegExp;
+}>;
 export declare function runPrePublishChecks(geneDir: string, geneName: string): PrePublishResult;
 //# sourceMappingURL=pre-publish-check.d.ts.map

package/dist/publish/pre-publish-check.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pre-publish-check.d.ts","sourceRoot":"","sources":["../../src/publish/pre-publish-check.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AAE7D,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;IACjC,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,OAAO,CAAC;IAChB,KAAK,EAAE,KAAK,CAAC;IACb,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,QAAQ,EAAE,SAAS,EAAE,CAAC;IACtB,UAAU,EAAE,UAAU,GAAG,IAAI,CAAC;CAC/B;AAoOD,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,gBAAgB,CAuBvF"}
+{"version":3,"file":"pre-publish-check.d.ts","sourceRoot":"","sources":["../../src/publish/pre-publish-check.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AAE7D,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;IACjC,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,OAAO,CAAC;IAChB,KAAK,EAAE,KAAK,CAAC;IACb,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,QAAQ,EAAE,SAAS,EAAE,CAAC;IACtB,UAAU,EAAE,UAAU,GAAG,IAAI,CAAC;CAC/B;AAKD;;;;;;;;;;GAUG;AACH,eAAO,MAAM,kBAAkB,EAAE,aAAa,CAAC;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAUhF,CAAC;AAwNF,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,gBAAgB,CAuBvF"}

package/dist/publish/pre-publish-check.js

@@ -1,18 +1,33 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.SENSITIVE_PATTERNS = void 0;
 exports.runPrePublishChecks = runPrePublishChecks;
 const node_fs_1 = require("node:fs");
 const node_path_1 = require("node:path");
 const index_js_1 = require("../scanner/index.js");
 const WASM_MAGIC = new Uint8Array([0x00, 0x61, 0x73, 0x6d]); // \0asm
 const MAX_WASM_SIZE = 50 * 1024 * 1024; // 50 MB — suspiciously large for a Gene
-const SENSITIVE_PATTERNS = [
+/**
+ * Credential formats recognisable by their own prefix or framing. Shared by the
+ * publish check (every source file of a gene) and the Genome Blueprint export
+ * scan (every key and string of the file), so a format added here guards both.
+ *
+ * Bare key shapes — 64 hex characters, unframed Base64 of 32/64 bytes — are
+ * deliberately NOT here: gene source routinely carries sha256 constants and
+ * fixtures, so matching them would fail publishes that are fine today. The
+ * Blueprint scan adds those rules on its own, where it can exempt the fields
+ * that legitimately hold a hash (src/commands/genome.ts).
+ */
+exports.SENSITIVE_PATTERNS = [
     { label: "AWS key", pattern: /AKIA[0-9A-Z]{16}/ },
     { label: "GitHub token", pattern: /ghp_[A-Za-z0-9]{36}/ },
     { label: "npm token", pattern: /npm_[A-Za-z0-9]{36}/ },
     { label: "Supabase service key", pattern: /eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9\.[A-Za-z0-9_-]{50,}/ },
     { label: "Private key block", pattern: /-----BEGIN (?:RSA |EC |DSA )?PRIVATE KEY-----/ },
     { label: "Generic secret assignment", pattern: /(?:secret|password|token|api_key)\s*[:=]\s*["'][A-Za-z0-9+/=]{20,}["']/i },
+    { label: "Stripe live key", pattern: /(?:sk|rk)_live_[A-Za-z0-9]{24,}/ },
+    { label: "OpenAI key", pattern: /sk-(?:proj-|svcacct-|admin-)?[A-Za-z0-9_-]{40,}/ },
+    { label: "JWT", pattern: /eyJ[A-Za-z0-9_-]{10,}\.eyJ[A-Za-z0-9_-]{10,}\.[A-Za-z0-9_-]{10,}/ },
 ];
 const SCAN_EXTENSIONS = new Set([".ts", ".js", ".mts", ".mjs", ".cjs", ".json", ".md"]);
 function collectAllFiles(dir) {
@@ -143,7 +158,7 @@ function checkSensitiveData(geneDir) {
         catch {
             continue;
         }
-        for (const { label, pattern } of SENSITIVE_PATTERNS) {
+        for (const { label, pattern } of exports.SENSITIVE_PATTERNS) {
             if (pattern.test(content)) {
                 const relPath = file.replace(geneDir + "/", "");
                 leaks.push(`${label} in ${relPath}`);