@rotifer/playground 0.26.3 → 0.28.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +37 -0
- package/README.md +3 -1
- package/README.zh.md +3 -1
- package/dist/cloud/capability-candidates.d.ts +87 -0
- package/dist/cloud/capability-candidates.d.ts.map +1 -0
- package/dist/cloud/capability-candidates.js +244 -0
- package/dist/cloud/capability-candidates.js.map +1 -0
- package/dist/commands/agent-create.d.ts +8 -0
- package/dist/commands/agent-create.d.ts.map +1 -1
- package/dist/commands/agent-create.js +5 -2
- package/dist/commands/agent-create.js.map +1 -1
- package/dist/commands/agent-run.d.ts.map +1 -1
- package/dist/commands/agent-run.js +23 -13
- package/dist/commands/agent-run.js.map +1 -1
- package/dist/commands/genome-import.d.ts +122 -0
- package/dist/commands/genome-import.d.ts.map +1 -0
- package/dist/commands/genome-import.js +632 -0
- package/dist/commands/genome-import.js.map +1 -0
- package/dist/commands/genome.d.ts +213 -0
- package/dist/commands/genome.d.ts.map +1 -0
- package/dist/commands/genome.js +606 -0
- package/dist/commands/genome.js.map +1 -0
- package/dist/commands/install.d.ts +54 -0
- package/dist/commands/install.d.ts.map +1 -1
- package/dist/commands/install.js +148 -75
- package/dist/commands/install.js.map +1 -1
- package/dist/commands/network.d.ts.map +1 -1
- package/dist/commands/network.js +12 -15
- package/dist/commands/network.js.map +1 -1
- package/dist/commands/publish.js +2 -2
- package/dist/commands/publish.js.map +1 -1
- package/dist/commands/vg.js +2 -2
- package/dist/commands/vg.js.map +1 -1
- package/dist/commands/wrap.d.ts.map +1 -1
- package/dist/commands/wrap.js +15 -3
- package/dist/commands/wrap.js.map +1 -1
- package/dist/index.js +4 -0
- package/dist/index.js.map +1 -1
- package/dist/publish/pre-publish-check.d.ts +15 -0
- package/dist/publish/pre-publish-check.d.ts.map +1 -1
- package/dist/publish/pre-publish-check.js +17 -2
- package/dist/publish/pre-publish-check.js.map +1 -1
- package/dist/scanner/index.d.ts +1 -1
- package/dist/scanner/index.d.ts.map +1 -1
- package/dist/scanner/index.js +3 -1
- package/dist/scanner/index.js.map +1 -1
- package/dist/scanner/literals.d.ts +2 -0
- package/dist/scanner/literals.d.ts.map +1 -0
- package/dist/scanner/literals.js +293 -0
- package/dist/scanner/literals.js.map +1 -0
- package/dist/scanner/rules.d.ts +14 -0
- package/dist/scanner/rules.d.ts.map +1 -1
- package/dist/scanner/rules.js +30 -1
- package/dist/scanner/rules.js.map +1 -1
- package/dist/scanner/scanner.d.ts.map +1 -1
- package/dist/scanner/scanner.js +8 -1
- package/dist/scanner/scanner.js.map +1 -1
- package/dist/scanner/types.d.ts +7 -0
- package/dist/scanner/types.d.ts.map +1 -1
- package/dist/utils/binding.d.ts +20 -2
- package/dist/utils/binding.d.ts.map +1 -1
- package/dist/utils/binding.js +22 -0
- package/dist/utils/binding.js.map +1 -1
- package/dist/utils/p2p-daemon.d.ts.map +1 -1
- package/dist/utils/p2p-daemon.js +6 -2
- package/dist/utils/p2p-daemon.js.map +1 -1
- package/dist/utils/rust-phenotype.d.ts +24 -0
- package/dist/utils/rust-phenotype.d.ts.map +1 -0
- package/dist/utils/rust-phenotype.js +59 -0
- package/dist/utils/rust-phenotype.js.map +1 -0
- package/genes/genesis-file-read/phenotype.json +1 -0
- package/package.json +5 -5
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+
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|
package/dist/scanner/rules.d.ts
CHANGED
|
@@ -1,3 +1,17 @@
|
|
|
1
1
|
import type { ScanRule } from "./types.js";
|
|
2
|
+
/**
|
|
3
|
+
* Version of the rules table, sent as `scanner_version` with every uploaded
|
|
4
|
+
* safety badge. Grades are only comparable between scans of the same version,
|
|
5
|
+
* so any change to SCAN_RULES or to how lines are matched (scanner.ts,
|
|
6
|
+
* literals.ts) must bump it. tests/unit/scanner-rules.test.ts pins
|
|
7
|
+
* rulesFingerprint() per version, and the hash of literals.ts, and fails until
|
|
8
|
+
* both are updated.
|
|
9
|
+
*/
|
|
10
|
+
export declare const SCANNER_VERSION = "0.8.2";
|
|
2
11
|
export declare const SCAN_RULES: ScanRule[];
|
|
12
|
+
/**
|
|
13
|
+
* SHA-256 over everything in the rules table that affects a scan result: ids,
|
|
14
|
+
* descriptions, severities, match mode and each pattern's source and flags.
|
|
15
|
+
*/
|
|
16
|
+
export declare function rulesFingerprint(rules?: ScanRule[]): string;
|
|
3
17
|
//# sourceMappingURL=rules.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"rules.d.ts","sourceRoot":"","sources":["../../src/scanner/rules.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"rules.d.ts","sourceRoot":"","sources":["../../src/scanner/rules.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAE3C;;;;;;;GAOG;AACH,eAAO,MAAM,eAAe,UAAU,CAAC;AAEvC,eAAO,MAAM,UAAU,EAAE,QAAQ,EAuGhC,CAAC;AAEF;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,GAAE,QAAQ,EAAe,GAAG,MAAM,CASvE"}
|
package/dist/scanner/rules.js
CHANGED
|
@@ -1,11 +1,26 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.SCAN_RULES = void 0;
|
|
3
|
+
exports.SCAN_RULES = exports.SCANNER_VERSION = void 0;
|
|
4
|
+
exports.rulesFingerprint = rulesFingerprint;
|
|
5
|
+
const node_crypto_1 = require("node:crypto");
|
|
6
|
+
/**
|
|
7
|
+
* Version of the rules table, sent as `scanner_version` with every uploaded
|
|
8
|
+
* safety badge. Grades are only comparable between scans of the same version,
|
|
9
|
+
* so any change to SCAN_RULES or to how lines are matched (scanner.ts,
|
|
10
|
+
* literals.ts) must bump it. tests/unit/scanner-rules.test.ts pins
|
|
11
|
+
* rulesFingerprint() per version, and the hash of literals.ts, and fails until
|
|
12
|
+
* both are updated.
|
|
13
|
+
*/
|
|
14
|
+
exports.SCANNER_VERSION = "0.8.2";
|
|
4
15
|
exports.SCAN_RULES = [
|
|
5
16
|
{
|
|
6
17
|
id: "S-01",
|
|
7
18
|
description: "Dynamic code execution",
|
|
8
19
|
severity: "CRITICAL",
|
|
20
|
+
// security-auditor detects eval() in other code, so its source holds the
|
|
21
|
+
// regex /\beval\s*\(/ and the message "eval() usage"; raw-line matching
|
|
22
|
+
// graded it D. Only an actual call in code counts.
|
|
23
|
+
matchOn: "code",
|
|
9
24
|
patterns: [
|
|
10
25
|
/\beval\s*\(/,
|
|
11
26
|
/\bFunction\s*\(/,
|
|
@@ -101,4 +116,18 @@ exports.SCAN_RULES = [
|
|
|
101
116
|
],
|
|
102
117
|
},
|
|
103
118
|
];
|
|
119
|
+
/**
|
|
120
|
+
* SHA-256 over everything in the rules table that affects a scan result: ids,
|
|
121
|
+
* descriptions, severities, match mode and each pattern's source and flags.
|
|
122
|
+
*/
|
|
123
|
+
function rulesFingerprint(rules = exports.SCAN_RULES) {
|
|
124
|
+
const canonical = rules.map((r) => ({
|
|
125
|
+
id: r.id,
|
|
126
|
+
description: r.description,
|
|
127
|
+
severity: r.severity,
|
|
128
|
+
matchOn: r.matchOn ?? "line",
|
|
129
|
+
patterns: r.patterns.map((p) => [p.source, p.flags]),
|
|
130
|
+
}));
|
|
131
|
+
return (0, node_crypto_1.createHash)("sha256").update(JSON.stringify(canonical)).digest("hex");
|
|
132
|
+
}
|
|
104
133
|
//# sourceMappingURL=rules.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"rules.js","sourceRoot":"","sources":["../../src/scanner/rules.ts"],"names":[],"mappings":";;;
|
|
1
|
+
{"version":3,"file":"rules.js","sourceRoot":"","sources":["../../src/scanner/rules.ts"],"names":[],"mappings":";;;AA0HA,4CASC;AAnID,6CAAyC;AAGzC;;;;;;;GAOG;AACU,QAAA,eAAe,GAAG,OAAO,CAAC;AAE1B,QAAA,UAAU,GAAe;IACpC;QACE,EAAE,EAAE,MAAM;QACV,WAAW,EAAE,wBAAwB;QACrC,QAAQ,EAAE,UAAU;QACpB,yEAAyE;QACzE,wEAAwE;QACxE,mDAAmD;QACnD,OAAO,EAAE,MAAM;QACf,QAAQ,EAAE;YACR,aAAa;YACb,iBAAiB;YACjB,qBAAqB;SACtB;KACF;IACD;QACE,EAAE,EAAE,MAAM;QACV,WAAW,EAAE,0BAA0B;QACvC,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE;YACR,sEAAsE;YACtE,yEAAyE;YACzE,wDAAwD;YACxD,2CAA2C;YAC3C,8BAA8B;YAC9B,iEAAiE;YACjE,0EAA0E;YAC1E,uEAAuE;YACvE,4EAA4E;YAC5E,2EAA2E;YAC3E,sEAAsE;YACtE,wEAAwE;YACxE,sBAAsB;YACtB,0BAA0B;YAC1B,uBAAuB;YACvB,2BAA2B;SAC5B;KACF;IACD;QACE,EAAE,EAAE,MAAM;QACV,WAAW,EAAE,4CAA4C;QACzD,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE;YACR,iCAAiC;YACjC,sBAAsB;YACtB,yDAAyD;YACzD,kDAAkD;SACnD;KACF;IACD;QACE,EAAE,EAAE,MAAM;QACV,WAAW,EAAE,mCAAmC;QAChD,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE;YACR,cAAc;YACd,sBAAsB;YACtB,uBAAuB;YACvB,2BAA2B;YAC3B,gBAAgB;SACjB;KACF;IACD;QACE,EAAE,EAAE,MAAM;QACV,WAAW,EAAE,6BAA6B;QAC1C,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE;YACR,kBAAkB;YAClB,eAAe;YACf,iBAAiB;YACjB,uBAAuB;SACxB;KACF;IACD;QACE,EAAE,EAAE,MAAM;QACV,WAAW,EAAE,gCAAgC;QAC7C,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE;YACR,sBAAsB;YACtB,oBAAoB;YACpB,wBAAwB;YACxB,8BAA8B;YAC9B,qBAAqB;SACtB;KACF;IACD;QACE,EAAE,EAAE,MAAM;QACV,WAAW,EAAE,wBAAwB;QACrC,QAAQ,EAAE,QAAQ;QAClB,QAAQ,EAAE;YACR,kBAAkB;YAClB,sBAAsB;YACtB,mBAAmB;YACnB,uBAAuB;YACvB,gBAAgB;YAChB,oBAAoB;YACpB,gBAAgB;YAChB,YAAY;YACZ,eAAe;YACf,mBAAmB;YACnB,qBAAqB;YACrB,sBAAsB;SACvB;KACF;CACF,CAAC;AAEF;;;GAGG;AACH,SAAgB,gBAAgB,CAAC,QAAoB,kBAAU;IAC7D,MAAM,SAAS,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QAClC,EAAE,EAAE,CAAC,CAAC,EAAE;QACR,WAAW,EAAE,CAAC,CAAC,WAAW;QAC1B,QAAQ,EAAE,CAAC,CAAC,QAAQ;QACpB,OAAO,EAAE,CAAC,CAAC,OAAO,IAAI,MAAM;QAC5B,QAAQ,EAAE,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;KACrD,CAAC,CAAC,CAAC;IACJ,OAAO,IAAA,wBAAU,EAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC9E,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/scanner/scanner.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/scanner/scanner.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AA+B7D,wBAAgB,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,EAAE,CA6BrE;AAED,wBAAgB,YAAY,CAAC,QAAQ,EAAE,OAAO,EAAE,GAAG,KAAK,CAQvD;AAED,MAAM,WAAW,WAAW;IAC1B,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED,wBAAgB,IAAI,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,WAAW,GAAG,UAAU,CAkCrF"}
|
package/dist/scanner/scanner.js
CHANGED
|
@@ -6,7 +6,12 @@ exports.scan = scan;
|
|
|
6
6
|
const node_fs_1 = require("node:fs");
|
|
7
7
|
const node_path_1 = require("node:path");
|
|
8
8
|
const rules_js_1 = require("./rules.js");
|
|
9
|
+
const literals_js_1 = require("./literals.js");
|
|
9
10
|
const CODE_EXTENSIONS = new Set([".ts", ".js", ".mts", ".mjs", ".cjs", ".tsx", ".jsx", ".sh", ".py"]);
|
|
11
|
+
// Files whose literals maskJsLiterals understands. .tsx/.jsx are left out (JSX
|
|
12
|
+
// text such as `Don't` is not a string literal), as are .sh and .py, whose
|
|
13
|
+
// quoting rules differ; those keep raw-line matching for every rule.
|
|
14
|
+
const JS_EXTENSIONS = new Set([".ts", ".js", ".mts", ".mjs", ".cjs"]);
|
|
10
15
|
function collectCodeFiles(dir) {
|
|
11
16
|
const files = [];
|
|
12
17
|
const walk = (d) => {
|
|
@@ -34,13 +39,15 @@ function scanFile(filePath, rootDir) {
|
|
|
34
39
|
const lines = content.split("\n");
|
|
35
40
|
const relPath = (0, node_path_1.relative)(rootDir, filePath);
|
|
36
41
|
const findings = [];
|
|
42
|
+
const codeLines = JS_EXTENSIONS.has((0, node_path_1.extname)(filePath)) ? (0, literals_js_1.maskJsLiterals)(lines) : lines;
|
|
37
43
|
for (let i = 0; i < lines.length; i++) {
|
|
38
44
|
const line = lines[i];
|
|
39
45
|
if (line.trimStart().startsWith("//") || line.trimStart().startsWith("*"))
|
|
40
46
|
continue;
|
|
41
47
|
for (const rule of rules_js_1.SCAN_RULES) {
|
|
48
|
+
const subject = rule.matchOn === "code" ? codeLines[i] : line;
|
|
42
49
|
for (const pattern of rule.patterns) {
|
|
43
|
-
if (pattern.test(
|
|
50
|
+
if (pattern.test(subject)) {
|
|
44
51
|
findings.push({
|
|
45
52
|
rule: rule.id,
|
|
46
53
|
severity: rule.severity,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"scanner.js","sourceRoot":"","sources":["../../src/scanner/scanner.ts"],"names":[],"mappings":";;
|
|
1
|
+
{"version":3,"file":"scanner.js","sourceRoot":"","sources":["../../src/scanner/scanner.ts"],"names":[],"mappings":";;AAmCA,4BA6BC;AAED,oCAQC;AAMD,oBAkCC;AAlHD,qCAA0E;AAC1E,yCAAoD;AACpD,yCAAwC;AACxC,+CAA+C;AAG/C,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC;AAEtG,+EAA+E;AAC/E,2EAA2E;AAC3E,qEAAqE;AACrE,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;AAEtE,SAAS,gBAAgB,CAAC,GAAW;IACnC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,IAAI,GAAG,CAAC,CAAS,EAAE,EAAE;QACzB,KAAK,MAAM,KAAK,IAAI,IAAA,qBAAW,EAAC,CAAC,CAAC,EAAE,CAAC;YACnC,IAAI,KAAK,KAAK,cAAc,IAAI,KAAK,KAAK,MAAM,IAAI,KAAK,KAAK,MAAM;gBAAE,SAAS;YAC/E,MAAM,IAAI,GAAG,IAAA,gBAAI,EAAC,CAAC,EAAE,KAAK,CAAC,CAAC;YAC5B,MAAM,EAAE,GAAG,IAAA,kBAAQ,EAAC,IAAI,CAAC,CAAC;YAC1B,IAAI,EAAE,CAAC,WAAW,EAAE,EAAE,CAAC;gBACrB,IAAI,CAAC,IAAI,CAAC,CAAC;YACb,CAAC;iBAAM,IAAI,eAAe,CAAC,GAAG,CAAC,IAAA,mBAAO,EAAC,KAAK,CAAC,CAAC,EAAE,CAAC;gBAC/C,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACnB,CAAC;QACH,CAAC;IACH,CAAC,CAAC;IACF,IAAI,CAAC,GAAG,CAAC,CAAC;IACV,OAAO,KAAK,CAAC;AACf,CAAC;AAED,SAAS,eAAe,CAAC,GAAW;IAClC,OAAO,IAAA,oBAAU,EAAC,IAAA,gBAAI,EAAC,GAAG,EAAE,KAAK,CAAC,CAAC,CAAC;AACtC,CAAC;AAED,SAAgB,QAAQ,CAAC,QAAgB,EAAE,OAAe;IACxD,MAAM,OAAO,GAAG,IAAA,sBAAY,EAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;IAChD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,OAAO,GAAG,IAAA,oBAAQ,EAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IAC5C,MAAM,QAAQ,GAAc,EAAE,CAAC;IAC/B,MAAM,SAAS,GAAG,aAAa,CAAC,GAAG,CAAC,IAAA,mBAAO,EAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,IAAA,4BAAc,EAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;IAEvF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACtB,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,SAAS;QAEpF,KAAK,MAAM,IAAI,IAAI,qBAAU,EAAE,CAAC;YAC9B,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,KAAK,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;YAC9D,KAAK,MAAM,OAAO,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;gBACpC,IAAI,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC;oBAC1B,QAAQ,CAAC,IAAI,CAAC;wBACZ,IAAI,EAAE,IAAI,CAAC,EAAE;wBACb,QAAQ,EAAE,IAAI,CAAC,QAAQ;wBACvB,IAAI,EAAE,OAAO;wBACb,IAAI,EAAE,CAAC,GAAG,CAAC;wBACX,OAAO,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;qBACnC,CAAC,CAAC;oBACH,MAAM;gBACR,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,SAAgB,YAAY,CAAC,QAAmB;IAC9C,MAAM,SAAS,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,UAAU,CAAC,CAAC,MAAM,CAAC;IAC3E,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,MAAM,CAAC,CAAC,MAAM,CAAC;IAEnE,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC/B,IAAI,KAAK,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;IAC1B,IAAI,KAAK,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;IAC1B,OAAO,GAAG,CAAC;AACb,CAAC;AAMD,SAAgB,IAAI,CAAC,GAAW,EAAE,OAAgB,EAAE,OAAqB;IACvE,MAAM,aAAa,GAAG,OAAO,EAAE,OAAO,IAAI,KAAK,CAAC;IAEhD,IAAI,CAAC,aAAa,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,EAAE,CAAC;QAC5C,OAAO;YACL,QAAQ,EAAE,OAAO,IAAI,GAAG;YACxB,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACpC,KAAK,EAAE,GAAG;YACV,QAAQ,EAAE,EAAE;YACZ,KAAK,EAAE,EAAE,aAAa,EAAE,CAAC,EAAE,aAAa,EAAE,CAAC,EAAE;SAC9C,CAAC;IACJ,CAAC;IAED,MAAM,OAAO,GAAG,aAAa,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAA,gBAAI,EAAC,GAAG,EAAE,KAAK,CAAC,CAAC;IACvD,MAAM,KAAK,GAAG,gBAAgB,CAAC,OAAO,CAAC,CAAC;IACxC,MAAM,WAAW,GAAc,EAAE,CAAC;IAClC,IAAI,UAAU,GAAG,CAAC,CAAC;IAEnB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,OAAO,GAAG,IAAA,sBAAY,EAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QAC5C,UAAU,IAAI,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;QACzC,WAAW,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IAC3C,CAAC;IAED,OAAO;QACL,QAAQ,EAAE,OAAO,IAAI,GAAG;QACxB,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;QACpC,KAAK,EAAE,YAAY,CAAC,WAAW,CAAC;QAChC,QAAQ,EAAE,WAAW;QACrB,KAAK,EAAE;YACL,aAAa,EAAE,KAAK,CAAC,MAAM;YAC3B,aAAa,EAAE,UAAU;SAC1B;KACF,CAAC;AACJ,CAAC"}
|
package/dist/scanner/types.d.ts
CHANGED
|
@@ -5,6 +5,13 @@ export interface ScanRule {
|
|
|
5
5
|
description: string;
|
|
6
6
|
severity: Severity;
|
|
7
7
|
patterns: RegExp[];
|
|
8
|
+
/**
|
|
9
|
+
* "code": in JS/TS files, match against the line with string, template and
|
|
10
|
+
* regex literal bodies and comments blanked out (see literals.ts), so text
|
|
11
|
+
* that merely names a call is not a finding. Other file types, and rules
|
|
12
|
+
* without this field, match the raw line.
|
|
13
|
+
*/
|
|
14
|
+
matchOn?: "code";
|
|
8
15
|
}
|
|
9
16
|
export interface Finding {
|
|
10
17
|
rule: string;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/scanner/types.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,QAAQ,GAAG,UAAU,GAAG,MAAM,GAAG,QAAQ,CAAC;AACtD,MAAM,MAAM,KAAK,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,CAAC;AAEhD,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,EAAE,MAAM,EAAE,CAAC;
|
|
1
|
+
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/scanner/types.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,QAAQ,GAAG,UAAU,GAAG,MAAM,GAAG,QAAQ,CAAC;AACtD,MAAM,MAAM,KAAK,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,CAAC;AAEhD,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,QAAQ,CAAC;IACnB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB;;;;;OAKG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,OAAO;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,QAAQ,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,KAAK,CAAC;IACb,QAAQ,EAAE,OAAO,EAAE,CAAC;IACpB,KAAK,EAAE;QACL,aAAa,EAAE,MAAM,CAAC;QACtB,aAAa,EAAE,MAAM,CAAC;KACvB,CAAC;CACH"}
|
package/dist/utils/binding.d.ts
CHANGED
|
@@ -35,7 +35,7 @@ export interface NativeBinding {
|
|
|
35
35
|
buildTranslateGeneWasm(): Buffer;
|
|
36
36
|
executeGene(wasmBytes: Buffer, inputJson: string, phenotypeJson: string, constraintsJson?: string): ExecutionResultView;
|
|
37
37
|
l0Check(phenotypeJson: string, permissionsJson?: string, constraintsJson?: string): L0CheckResultView;
|
|
38
|
-
executeAlgebra(algebraJson: string, geneEntriesJson: string, inputJson: string): AlgebraResultView;
|
|
38
|
+
executeAlgebra(algebraJson: string, geneEntriesJson: string, inputJson: string, constraintsJson?: string): AlgebraResultView;
|
|
39
39
|
}
|
|
40
40
|
export declare function tryLoadBinding(): NativeBinding | null;
|
|
41
41
|
/** A gene announcement received from a peer (mirrors the Rust napi struct). */
|
|
@@ -43,8 +43,11 @@ export interface ReceivedAnnouncement {
|
|
|
43
43
|
geneId: string;
|
|
44
44
|
name: string;
|
|
45
45
|
domain: string;
|
|
46
|
+
/** Display label claimed by the publisher — not part of the identity. */
|
|
46
47
|
version: string;
|
|
47
48
|
fidelity: string;
|
|
49
|
+
irSpec: string;
|
|
50
|
+
/** GossipSub-authenticated publisher PeerId. */
|
|
48
51
|
publisher: string;
|
|
49
52
|
source?: string;
|
|
50
53
|
}
|
|
@@ -58,7 +61,8 @@ export interface P2pNodeHandle {
|
|
|
58
61
|
listenAddrs(): string[];
|
|
59
62
|
discoveredPeers(): string[];
|
|
60
63
|
receivedAnnouncements(): ReceivedAnnouncement[];
|
|
61
|
-
|
|
64
|
+
/** Announce the local gene `name` under `genesRoot`; returns its v2 ID. */
|
|
65
|
+
announceLocalGene(genesRoot: string, name: string): string;
|
|
62
66
|
stop(): void;
|
|
63
67
|
}
|
|
64
68
|
/**
|
|
@@ -67,5 +71,19 @@ export interface P2pNodeHandle {
|
|
|
67
71
|
* callers can degrade gracefully.
|
|
68
72
|
*/
|
|
69
73
|
export declare function loadP2pNode(listenHost: string, listenPort: number, bootstrapPeers: string[]): P2pNodeHandle | null;
|
|
74
|
+
/** Outcome of computing a gene's v2 ID: the ID, or why it has none. */
|
|
75
|
+
export type GeneIdV2Result = {
|
|
76
|
+
id: string;
|
|
77
|
+
} | {
|
|
78
|
+
reason: string;
|
|
79
|
+
};
|
|
80
|
+
/**
|
|
81
|
+
* Gene ID v2 of the gene `name` under `genesRoot` (docs/gene-id-v2.md).
|
|
82
|
+
* Computed by the native addon — the single implementation — so it is
|
|
83
|
+
* unavailable in a pure-TS environment.
|
|
84
|
+
*/
|
|
85
|
+
export declare function geneIdV2(genesRoot: string, name: string): GeneIdV2Result;
|
|
86
|
+
/** Whether the loaded native addon can compute v2 gene IDs (an older installed package cannot). */
|
|
87
|
+
export declare function hasNativeGeneIdV2(): boolean;
|
|
70
88
|
export declare function isNativeAvailable(): boolean;
|
|
71
89
|
//# sourceMappingURL=binding.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"binding.d.ts","sourceRoot":"","sources":["../../src/utils/binding.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,eAAe,EAAE,MAAM,CAAC;IACxB,aAAa,EAAE,OAAO,CAAC;CACxB;AAED,MAAM,WAAW,mBAAmB;IAClC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,aAAa,EAAE,MAAM,CAAC;IACtB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,aAAa;IAC5B,iBAAiB,CACf,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,GACjB,iBAAiB,CAAC;IACrB,cAAc,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1C,iBAAiB,IAAI,MAAM,CAAC;IAC5B,mBAAmB,IAAI,MAAM,CAAC;IAC9B,sBAAsB,IAAI,MAAM,CAAC;IACjC,sBAAsB,IAAI,MAAM,CAAC;IACjC,WAAW,CACT,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,GACvB,mBAAmB,CAAC;IACvB,OAAO,CACL,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,EACxB,eAAe,CAAC,EAAE,MAAM,GACvB,iBAAiB,CAAC;IACrB,cAAc,CACZ,WAAW,EAAE,MAAM,EACnB,eAAe,EAAE,MAAM,EACvB,SAAS,EAAE,MAAM,
|
|
1
|
+
{"version":3,"file":"binding.d.ts","sourceRoot":"","sources":["../../src/utils/binding.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,eAAe,EAAE,MAAM,CAAC;IACxB,aAAa,EAAE,OAAO,CAAC;CACxB;AAED,MAAM,WAAW,mBAAmB;IAClC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,aAAa,EAAE,MAAM,CAAC;IACtB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,aAAa;IAC5B,iBAAiB,CACf,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,GACjB,iBAAiB,CAAC;IACrB,cAAc,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1C,iBAAiB,IAAI,MAAM,CAAC;IAC5B,mBAAmB,IAAI,MAAM,CAAC;IAC9B,sBAAsB,IAAI,MAAM,CAAC;IACjC,sBAAsB,IAAI,MAAM,CAAC;IACjC,WAAW,CACT,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,GACvB,mBAAmB,CAAC;IACvB,OAAO,CACL,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,EACxB,eAAe,CAAC,EAAE,MAAM,GACvB,iBAAiB,CAAC;IACrB,cAAc,CACZ,WAAW,EAAE,MAAM,EACnB,eAAe,EAAE,MAAM,EACvB,SAAS,EAAE,MAAM,EACjB,eAAe,CAAC,EAAE,MAAM,GACvB,iBAAiB,CAAC;CACtB;AAgED,wBAAgB,cAAc,IAAI,aAAa,GAAG,IAAI,CAMrD;AAED,+EAA+E;AAC/E,MAAM,WAAW,oBAAoB;IACnC,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC;IACf,yEAAyE;IACzE,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;IACf,gDAAgD;IAChD,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED;;;GAGG;AACH,MAAM,WAAW,aAAa;IAC5B,KAAK,IAAI,IAAI,CAAC;IACd,MAAM,IAAI,MAAM,CAAC;IACjB,WAAW,IAAI,MAAM,EAAE,CAAC;IACxB,eAAe,IAAI,MAAM,EAAE,CAAC;IAC5B,qBAAqB,IAAI,oBAAoB,EAAE,CAAC;IAChD,2EAA2E;IAC3E,iBAAiB,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC;IAC3D,IAAI,IAAI,IAAI,CAAC;CACd;AAED;;;;GAIG;AACH,wBAAgB,WAAW,CACzB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,cAAc,EAAE,MAAM,EAAE,GACvB,aAAa,GAAG,IAAI,CAStB;AAED,uEAAuE;AACvE,MAAM,MAAM,cAAc,GAAG;IAAE,EAAE,EAAE,MAAM,CAAA;CAAE,GAAG;IAAE,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAEjE;;;;GAIG;AACH,wBAAgB,QAAQ,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,cAAc,CAQxE;AAED,mGAAmG;AACnG,wBAAgB,iBAAiB,IAAI,OAAO,CAE3C;AAED,wBAAgB,iBAAiB,IAAI,OAAO,CAE3C"}
|
package/dist/utils/binding.js
CHANGED
|
@@ -2,6 +2,8 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.tryLoadBinding = tryLoadBinding;
|
|
4
4
|
exports.loadP2pNode = loadP2pNode;
|
|
5
|
+
exports.geneIdV2 = geneIdV2;
|
|
6
|
+
exports.hasNativeGeneIdV2 = hasNativeGeneIdV2;
|
|
5
7
|
exports.isNativeAvailable = isNativeAvailable;
|
|
6
8
|
const node_path_1 = require("node:path");
|
|
7
9
|
const node_fs_1 = require("node:fs");
|
|
@@ -84,6 +86,26 @@ function loadP2pNode(listenHost, listenPort, bootstrapPeers) {
|
|
|
84
86
|
return null;
|
|
85
87
|
return new Ctor(listenHost, listenPort, bootstrapPeers);
|
|
86
88
|
}
|
|
89
|
+
/**
|
|
90
|
+
* Gene ID v2 of the gene `name` under `genesRoot` (docs/gene-id-v2.md).
|
|
91
|
+
* Computed by the native addon — the single implementation — so it is
|
|
92
|
+
* unavailable in a pure-TS environment.
|
|
93
|
+
*/
|
|
94
|
+
function geneIdV2(genesRoot, name) {
|
|
95
|
+
const fn = loadRawModule()?.geneIdV2;
|
|
96
|
+
if (typeof fn !== "function")
|
|
97
|
+
return { reason: "native module not available" };
|
|
98
|
+
try {
|
|
99
|
+
return { id: fn(genesRoot, name) };
|
|
100
|
+
}
|
|
101
|
+
catch (err) {
|
|
102
|
+
return { reason: err.message.replace(/^gene ID not computable: /, "") };
|
|
103
|
+
}
|
|
104
|
+
}
|
|
105
|
+
/** Whether the loaded native addon can compute v2 gene IDs (an older installed package cannot). */
|
|
106
|
+
function hasNativeGeneIdV2() {
|
|
107
|
+
return typeof loadRawModule()?.geneIdV2 === "function";
|
|
108
|
+
}
|
|
87
109
|
function isNativeAvailable() {
|
|
88
110
|
return tryLoadBinding() !== null;
|
|
89
111
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"binding.js","sourceRoot":"","sources":["../../src/utils/binding.ts"],"names":[],"mappings":";;
|
|
1
|
+
{"version":3,"file":"binding.js","sourceRoot":"","sources":["../../src/utils/binding.ts"],"names":[],"mappings":";;AAgIA,wCAMC;AAoCD,kCAaC;AAUD,4BAQC;AAGD,8CAEC;AAED,8CAEC;AAlND,yCAAiC;AACjC,qCAAqC;AACrC,mDAAmD;AAgEnD,IAAI,QAAQ,GAAyB,IAAI,CAAC;AAC1C,IAAI,iBAAiB,GAAG,KAAK,CAAC;AAC9B,IAAI,UAAU,GAAmC,IAAI,CAAC;AACtD,IAAI,uBAAuB,GAAG,KAAK,CAAC;AAEpC,MAAM,oBAAoB,GAA2B;IACnD,cAAc,EAAE,kCAAkC;IAClD,YAAY,EAAE,gCAAgC;IAC9C,WAAW,EAAE,mCAAmC;IAChD,WAAW,EAAE,oCAAoC;CAClD,CAAC;AAEF,SAAS,WAAW,CAAC,GAA4B;IAC/C,IAAI,CAAC,GAAG,CAAC,iBAAiB;QAAE,OAAO,IAAI,CAAC;IACxC,MAAM,MAAM,GAAG,IAAA,gBAAI,EACjB,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,OAAO,CAAC,GAAG,CAAC,WAAW,IAAI,MAAM,EACrD,UAAU,EACV,cAAc,CACf,CAAC;IACF,IAAA,gCAAgB,EAAC,MAAM,CAAC,CAAC;IACzB,OAAO,IAAK,GAAG,CAAC,iBAAwD,CAAC,MAAM,CAAC,CAAC;AACnF,CAAC;AAED;;;;GAIG;AACH,SAAS,aAAa;IACpB,IAAI,uBAAuB;QAAE,OAAO,UAAU,CAAC;IAC/C,uBAAuB,GAAG,IAAI,CAAC;IAE/B,MAAM,WAAW,GAAG,GAAG,OAAO,CAAC,QAAQ,IAAI,OAAO,CAAC,IAAI,EAAE,CAAC;IAC1D,MAAM,OAAO,GAAG,oBAAoB,CAAC,WAAW,CAAC,CAAC;IAClD,IAAI,OAAO,EAAE,CAAC;QACZ,IAAI,CAAC;YACH,UAAU,GAAG,OAAO,CAAC,OAAO,CAA4B,CAAC;YACzD,OAAO,UAAU,CAAC;QACpB,CAAC;QAAC,MAAM,CAAC;YACP,gEAAgE;QAClE,CAAC;IACH,CAAC;IAED,MAAM,eAAe,GAAG;QACtB,IAAA,gBAAI,EAAC,SAAS,EAAE,IAAI,EAAE,IAAI,EAAE,SAAS,WAAW,OAAO,CAAC;QACxD,IAAA,gBAAI,EAAC,SAAS,EAAE,IAAI,EAAE,IAAI,EAAE,SAAS,OAAO,CAAC,QAAQ,IAAI,OAAO,CAAC,IAAI,OAAO,CAAC;QAC7E,IAAA,gBAAI,EAAC,SAAS,EAAE,IAAI,EAAE,IAAI,EAAE,gBAAgB,OAAO,CAAC,QAAQ,IAAI,OAAO,CAAC,IAAI,OAAO,CAAC;KACrF,CAAC;IACF,KAAK,MAAM,SAAS,IAAI,eAAe,EAAE,CAAC;QACxC,IAAI,IAAA,oBAAU,EAAC,SAAS,CAAC,EAAE,CAAC;YAC1B,IAAI,CAAC;gBACH,UAAU,GAAG,OAAO,CAAC,SAAS,CAA4B,CAAC;gBAC3D,OAAO,UAAU,CAAC;YACpB,CAAC;YAAC,MAAM,CAAC;gBACP,6CAA6C;YAC/C,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,IAAI,CAAC;AACd,CAAC;AAED,SAAgB,cAAc;IAC5B,IAAI,iBAAiB;QAAE,OAAO,QAAQ,CAAC;IACvC,iBAAiB,GAAG,IAAI,CAAC;IACzB,MAAM,GAAG,GAAG,aAAa,EAAE,CAAC;IAC5B,IAAI,GAAG;QAAE,QAAQ,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;IACrC,OAAO,QAAQ,CAAC;AAClB,CAAC;AA+BD;;;;GAIG;AACH,SAAgB,WAAW,CACzB,UAAkB,EAClB,UAAkB,EAClB,cAAwB;IAExB,MAAM,GAAG,GAAG,aAAa,EAAE,CAAC;IAC5B,wEAAwE;IACxE,kFAAkF;IAClF,MAAM,IAAI,GAAG,CAAC,GAAG,EAAE,OAAO,IAAI,GAAG,EAAE,OAAO,CAE7B,CAAC;IACd,IAAI,OAAO,IAAI,KAAK,UAAU;QAAE,OAAO,IAAI,CAAC;IAC5C,OAAO,IAAI,IAAI,CAAC,UAAU,EAAE,UAAU,EAAE,cAAc,CAAC,CAAC;AAC1D,CAAC;AAKD;;;;GAIG;AACH,SAAgB,QAAQ,CAAC,SAAiB,EAAE,IAAY;IACtD,MAAM,EAAE,GAAG,aAAa,EAAE,EAAE,QAAgE,CAAC;IAC7F,IAAI,OAAO,EAAE,KAAK,UAAU;QAAE,OAAO,EAAE,MAAM,EAAE,6BAA6B,EAAE,CAAC;IAC/E,IAAI,CAAC;QACH,OAAO,EAAE,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,IAAI,CAAC,EAAE,CAAC;IACrC,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,OAAO,EAAE,MAAM,EAAG,GAAa,CAAC,OAAO,CAAC,OAAO,CAAC,2BAA2B,EAAE,EAAE,CAAC,EAAE,CAAC;IACrF,CAAC;AACH,CAAC;AAED,mGAAmG;AACnG,SAAgB,iBAAiB;IAC/B,OAAO,OAAO,aAAa,EAAE,EAAE,QAAQ,KAAK,UAAU,CAAC;AACzD,CAAC;AAED,SAAgB,iBAAiB;IAC/B,OAAO,cAAc,EAAE,KAAK,IAAI,CAAC;AACnC,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"p2p-daemon.d.ts","sourceRoot":"","sources":["../../src/utils/p2p-daemon.ts"],"names":[],"mappings":"AA4BA,MAAM,WAAW,WAAW;IAC1B,GAAG,EAAE,MAAM,CAAC;IACZ,kDAAkD;IAClD,IAAI,EAAE,MAAM,CAAC;IACb,yDAAyD;IACzD,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,wBAAgB,eAAe,IAAI,WAAW,GAAG,IAAI,CAOpD;AAQD,wBAAgB,gBAAgB,IAAI,IAAI,CAMvC;AAED,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,OAAO,CAAC;IACZ,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,OAAO,CAAC;CACf;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAC5B,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,OAAO,GACb,OAAO,CAAC,aAAa,GAAG,IAAI,CAAC,CA6C/B;AAED,qEAAqE;AACrE,wBAAsB,eAAe,IAAI,OAAO,CAAC,OAAO,CAAC,CAGxD;AAED;;;;GAIG;AACH,wBAAsB,SAAS,CAC7B,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,cAAc,EAAE,MAAM,EAAE,GACvB,OAAO,CAAC,IAAI,CAAC,
|
|
1
|
+
{"version":3,"file":"p2p-daemon.d.ts","sourceRoot":"","sources":["../../src/utils/p2p-daemon.ts"],"names":[],"mappings":"AA4BA,MAAM,WAAW,WAAW;IAC1B,GAAG,EAAE,MAAM,CAAC;IACZ,kDAAkD;IAClD,IAAI,EAAE,MAAM,CAAC;IACb,yDAAyD;IACzD,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,wBAAgB,eAAe,IAAI,WAAW,GAAG,IAAI,CAOpD;AAQD,wBAAgB,gBAAgB,IAAI,IAAI,CAMvC;AAED,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,OAAO,CAAC;IACZ,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,OAAO,CAAC;CACf;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAC5B,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,OAAO,GACb,OAAO,CAAC,aAAa,GAAG,IAAI,CAAC,CA6C/B;AAED,qEAAqE;AACrE,wBAAsB,eAAe,IAAI,OAAO,CAAC,OAAO,CAAC,CAGxD;AAED;;;;GAIG;AACH,wBAAsB,SAAS,CAC7B,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,cAAc,EAAE,MAAM,EAAE,GACvB,OAAO,CAAC,IAAI,CAAC,CA2Ff"}
|
package/dist/utils/p2p-daemon.js
CHANGED
|
@@ -153,8 +153,12 @@ async function runDaemon(listenHost, listenPort, bootstrapPeers) {
|
|
|
153
153
|
req.on("end", () => {
|
|
154
154
|
try {
|
|
155
155
|
const g = JSON.parse(data);
|
|
156
|
-
|
|
157
|
-
|
|
156
|
+
if (!g.genesRoot || !g.name)
|
|
157
|
+
throw new Error("genesRoot and name are required");
|
|
158
|
+
// The native node builds the wire record itself (v2 ID, fields,
|
|
159
|
+
// IR spec version), so every field has a single implementation.
|
|
160
|
+
const geneId = node.announceLocalGene(g.genesRoot, g.name);
|
|
161
|
+
send(200, { ok: true, geneId });
|
|
158
162
|
}
|
|
159
163
|
catch (err) {
|
|
160
164
|
send(400, { error: err.message });
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"p2p-daemon.js","sourceRoot":"","sources":["../../src/utils/p2p-daemon.ts"],"names":[],"mappings":";;AAsCA,0CAOC;AAQD,4CAMC;AAYD,wCAiDC;AAGD,0CAGC;AAOD,
|
|
1
|
+
{"version":3,"file":"p2p-daemon.js","sourceRoot":"","sources":["../../src/utils/p2p-daemon.ts"],"names":[],"mappings":";;AAsCA,0CAOC;AAQD,4CAMC;AAYD,wCAiDC;AAGD,0CAGC;AAOD,8BA+FC;AApOD;;;;;;;;;;;GAWG;AACH,yCAAkD;AAClD,qCAA0E;AAC1E,yCAAiC;AACjC,6CAA0C;AAC1C,mDAAuE;AACvE,6CAA2C;AAE3C,MAAM,YAAY,GAAG,IAAA,gBAAI,EACvB,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,OAAO,CAAC,GAAG,CAAC,WAAW,IAAI,MAAM,EACrD,UAAU,CACX,CAAC;AACF,MAAM,YAAY,GAAG,IAAA,gBAAI,EAAC,YAAY,EAAE,aAAa,CAAC,CAAC;AAEvD,MAAM,YAAY,GAAG,iBAAiB,CAAC;AACvC,MAAM,YAAY,GAAG,WAAW,CAAC;AAYjC,SAAgB,eAAe;IAC7B,IAAI,CAAC,IAAA,oBAAU,EAAC,YAAY,CAAC;QAAE,OAAO,IAAI,CAAC;IAC3C,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,KAAK,CAAC,IAAA,sBAAY,EAAC,YAAY,EAAE,OAAO,CAAC,CAAgB,CAAC;IACxE,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,KAAkB;IAC1C,IAAA,gCAAgB,EAAC,YAAY,CAAC,CAAC;IAC/B,IAAA,uBAAa,EAAC,YAAY,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC;IACnE,IAAA,kCAAkB,EAAC,YAAY,CAAC,CAAC;AACnC,CAAC;AAED,SAAgB,gBAAgB;IAC9B,IAAI,CAAC;QACH,IAAA,gBAAM,EAAC,YAAY,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;IACxC,CAAC;IAAC,MAAM,CAAC;QACP,iBAAiB;IACnB,CAAC;AACH,CAAC;AAQD;;;GAGG;AACH,SAAgB,cAAc,CAC5B,MAAc,EACd,IAAY,EACZ,IAAc;IAEd,MAAM,KAAK,GAAG,eAAe,EAAE,CAAC;IAChC,IAAI,CAAC,KAAK;QAAE,OAAO,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAEzC,MAAM,OAAO,GAAG,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;IACtE,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;QAC7B,MAAM,GAAG,GAAG,IAAA,mBAAO,EACjB;YACE,IAAI,EAAE,YAAY;YAClB,IAAI,EAAE,KAAK,CAAC,IAAI;YAChB,IAAI;YACJ,MAAM;YACN,OAAO,EAAE;gBACP,CAAC,YAAY,CAAC,EAAE,KAAK,CAAC,KAAK;gBAC3B,GAAG,CAAC,OAAO;oBACT,CAAC,CAAC;wBACE,cAAc,EAAE,kBAAkB;wBAClC,gBAAgB,EAAE,MAAM,CAAC,UAAU,CAAC,OAAO,CAAC;qBAC7C;oBACH,CAAC,CAAC,EAAE,CAAC;aACR;YACD,OAAO,EAAE,IAAI;SACd,EACD,CAAC,GAAG,EAAE,EAAE;YACN,IAAI,IAAI,GAAG,EAAE,CAAC;YACd,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,IAAI,IAAI,KAAK,CAAC,CAAC,CAAC;YAC3C,GAAG,CAAC,EAAE,CAAC,KAAK,EAAE,GAAG,EAAE;gBACjB,IAAI,MAAM,GAAY,IAAI,CAAC;gBAC3B,IAAI,CAAC;oBACH,MAAM,GAAG,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;gBAC1C,CAAC;gBAAC,MAAM,CAAC;oBACP,MAAM,GAAG,IAAI,CAAC;gBAChB,CAAC;gBACD,OAAO,CAAC,EAAE,EAAE,EAAE,CAAC,GAAG,CAAC,UAAU,IAAI,CAAC,CAAC,GAAG,GAAG,EAAE,MAAM,EAAE,GAAG,CAAC,UAAU,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC;YAC1F,CAAC,CAAC,CAAC;QACL,CAAC,CACF,CAAC;QACF,GAAG,CAAC,EAAE,CAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;QACrC,GAAG,CAAC,EAAE,CAAC,SAAS,EAAE,GAAG,EAAE;YACrB,GAAG,CAAC,OAAO,EAAE,CAAC;YACd,OAAO,CAAC,IAAI,CAAC,CAAC;QAChB,CAAC,CAAC,CAAC;QACH,IAAI,OAAO;YAAE,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;QAChC,GAAG,CAAC,GAAG,EAAE,CAAC;IACZ,CAAC,CAAC,CAAC;AACL,CAAC;AAED,qEAAqE;AAC9D,KAAK,UAAU,eAAe;IACnC,MAAM,MAAM,GAAG,MAAM,cAAc,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC;IACtD,OAAO,MAAM,EAAE,EAAE,IAAI,KAAK,CAAC;AAC7B,CAAC;AAED;;;;GAIG;AACI,KAAK,UAAU,SAAS,CAC7B,UAAkB,EAClB,UAAkB,EAClB,cAAwB;IAExB,MAAM,SAAS,GAAG,IAAA,wBAAW,EAAC,UAAU,EAAE,UAAU,EAAE,cAAc,CAAC,CAAC;IACtE,IAAI,CAAC,SAAS,EAAE,CAAC;QACf,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,oDAAoD,CAAC,CAAC;QAC3E,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IACD,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,2DAA2D;IACnF,IAAI,CAAC,KAAK,EAAE,CAAC;IAEb,MAAM,KAAK,GAAG,IAAA,yBAAW,EAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IAC9C,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAC7B,IAAI,cAAc,GAAG,KAAK,CAAC;IAE3B,MAAM,MAAM,GAAG,IAAA,wBAAY,EAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE;QACvC,MAAM,IAAI,GAAG,CAAC,IAAY,EAAE,GAAY,EAAQ,EAAE;YAChD,GAAG,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,cAAc,EAAE,kBAAkB,EAAE,CAAC,CAAC;YAC5D,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;QAC/B,CAAC,CAAC;QACF,IAAI,GAAG,CAAC,OAAO,CAAC,YAAY,CAAC,KAAK,KAAK,EAAE,CAAC;YACxC,IAAI,CAAC,GAAG,EAAE,EAAE,KAAK,EAAE,WAAW,EAAE,CAAC,CAAC;YAClC,OAAO;QACT,CAAC;QACD,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,GAAG,EAAE,UAAU,YAAY,EAAE,CAAC,CAAC;QAE9D,IAAI,GAAG,CAAC,MAAM,KAAK,KAAK,IAAI,GAAG,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;YACvD,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE;gBACrB,WAAW,EAAE,IAAI,CAAC,WAAW,EAAE;gBAC/B,KAAK,EAAE,IAAI,CAAC,eAAe,EAAE,CAAC,MAAM;gBACpC,SAAS;aACV,CAAC,CAAC;YACH,OAAO;QACT,CAAC;QACD,IAAI,GAAG,CAAC,MAAM,KAAK,KAAK,IAAI,GAAG,CAAC,QAAQ,KAAK,QAAQ,EAAE,CAAC;YACtD,IAAI,CAAC,GAAG,EAAE,EAAE,KAAK,EAAE,IAAI,CAAC,eAAe,EAAE,EAAE,CAAC,CAAC;YAC7C,OAAO;QACT,CAAC;QACD,IAAI,GAAG,CAAC,MAAM,KAAK,KAAK,IAAI,GAAG,CAAC,QAAQ,KAAK,WAAW,EAAE,CAAC;YACzD,IAAI,CAAC,GAAG,EAAE,EAAE,aAAa,EAAE,IAAI,CAAC,qBAAqB,EAAE,EAAE,CAAC,CAAC;YAC3D,OAAO;QACT,CAAC;QACD,IAAI,GAAG,CAAC,MAAM,KAAK,MAAM,IAAI,GAAG,CAAC,QAAQ,KAAK,WAAW,EAAE,CAAC;YAC1D,IAAI,IAAI,GAAG,EAAE,CAAC;YACd,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,IAAI,IAAI,KAAK,CAAC,CAAC,CAAC;YAC3C,GAAG,CAAC,EAAE,CAAC,KAAK,EAAE,GAAG,EAAE;gBACjB,IAAI,CAAC;oBACH,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAA0C,CAAC;oBACpE,IAAI,CAAC,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,CAAC,IAAI;wBAAE,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAC;oBAChF,gEAAgE;oBAChE,gEAAgE;oBAChE,MAAM,MAAM,GAAG,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;oBAC3D,IAAI,CAAC,GAAG,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC;gBAClC,CAAC;gBAAC,OAAO,GAAG,EAAE,CAAC;oBACb,IAAI,CAAC,GAAG,EAAE,EAAE,KAAK,EAAG,GAAa,CAAC,OAAO,EAAE,CAAC,CAAC;gBAC/C,CAAC;YACH,CAAC,CAAC,CAAC;YACH,OAAO;QACT,CAAC;QACD,IAAI,GAAG,CAAC,MAAM,KAAK,MAAM,IAAI,GAAG,CAAC,QAAQ,KAAK,OAAO,EAAE,CAAC;YACtD,IAAI,CAAC,GAAG,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC;YACxB,QAAQ,EAAE,CAAC;YACX,OAAO;QACT,CAAC;QACD,IAAI,CAAC,GAAG,EAAE,EAAE,KAAK,EAAE,WAAW,EAAE,CAAC,CAAC;IACpC,CAAC,CAAC,CAAC;IAEH,SAAS,QAAQ;QACf,IAAI,cAAc;YAAE,OAAO;QAC3B,cAAc,GAAG,IAAI,CAAC;QACtB,IAAI,CAAC;YACH,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,CAAC;QAAC,MAAM,CAAC;YACP,iBAAiB;QACnB,CAAC;QACD,MAAM,CAAC,KAAK,EAAE,CAAC;QACf,gBAAgB,EAAE,CAAC;QACnB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IACD,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;IAC/B,OAAO,CAAC,EAAE,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAC;IAEhC,MAAM,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QAC1C,MAAM,CAAC,MAAM,CAAC,CAAC,EAAE,YAAY,EAAE,GAAG,EAAE;YAClC,MAAM,IAAI,GAAG,MAAM,CAAC,OAAO,EAAE,CAAC;YAC9B,MAAM,IAAI,GAAG,OAAO,IAAI,KAAK,QAAQ,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAC9D,gBAAgB,CAAC,EAAE,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,EAAE,SAAS,EAAE,CAAC,CAAC;YACtF,OAAO,EAAE,CAAC;QACZ,CAAC,CAAC,CAAC;QACH,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC7B,CAAC,CAAC,CAAC;IACH,iFAAiF;AACnF,CAAC"}
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* Converts a phenotype.json, as the CLI writes it, into the JSON shape that
|
|
3
|
+
* `rotifer_core::types::gene::Phenotype` deserializes:
|
|
4
|
+
*
|
|
5
|
+
* | field | phenotype.json | Rust |
|
|
6
|
+
* |----------------|------------------------------------|----------------------|
|
|
7
|
+
* | `irHash` | 64-char hex string | `Option<[u8; 32]>` |
|
|
8
|
+
* | `createdAt` | epoch ms, or ISO 8601 (`wrap`) | `u64` epoch ms |
|
|
9
|
+
* | `dependencies` | gene names, or 64-char hex ids | `Vec<[u8; 32]>` |
|
|
10
|
+
*
|
|
11
|
+
* Values are converted, not dropped. A value that cannot be converted
|
|
12
|
+
* faithfully (an irHash that is not 32 bytes of hex, a createdAt that is not a
|
|
13
|
+
* date) is omitted, so Rust falls back to its serde default (`None` / `0`).
|
|
14
|
+
* None of the three fields is read while executing a gene — they are
|
|
15
|
+
* metadata — so omitting one does not change what runs.
|
|
16
|
+
*
|
|
17
|
+
* Other fields pass through unchanged.
|
|
18
|
+
*/
|
|
19
|
+
/**
|
|
20
|
+
* @param geneId maps a dependency given by gene name to its gene id, using the
|
|
21
|
+
* same derivation as the gene entries passed alongside the phenotype.
|
|
22
|
+
*/
|
|
23
|
+
export declare function toRustPhenotype(phenotype: Record<string, unknown>, geneId: (geneName: string) => string): Record<string, unknown>;
|
|
24
|
+
//# sourceMappingURL=rust-phenotype.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"rust-phenotype.d.ts","sourceRoot":"","sources":["../../src/utils/rust-phenotype.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAqBH;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAClC,MAAM,EAAE,CAAC,QAAQ,EAAE,MAAM,KAAK,MAAM,GACnC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAkBzB"}
|
|
@@ -0,0 +1,59 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
/**
|
|
3
|
+
* Converts a phenotype.json, as the CLI writes it, into the JSON shape that
|
|
4
|
+
* `rotifer_core::types::gene::Phenotype` deserializes:
|
|
5
|
+
*
|
|
6
|
+
* | field | phenotype.json | Rust |
|
|
7
|
+
* |----------------|------------------------------------|----------------------|
|
|
8
|
+
* | `irHash` | 64-char hex string | `Option<[u8; 32]>` |
|
|
9
|
+
* | `createdAt` | epoch ms, or ISO 8601 (`wrap`) | `u64` epoch ms |
|
|
10
|
+
* | `dependencies` | gene names, or 64-char hex ids | `Vec<[u8; 32]>` |
|
|
11
|
+
*
|
|
12
|
+
* Values are converted, not dropped. A value that cannot be converted
|
|
13
|
+
* faithfully (an irHash that is not 32 bytes of hex, a createdAt that is not a
|
|
14
|
+
* date) is omitted, so Rust falls back to its serde default (`None` / `0`).
|
|
15
|
+
* None of the three fields is read while executing a gene — they are
|
|
16
|
+
* metadata — so omitting one does not change what runs.
|
|
17
|
+
*
|
|
18
|
+
* Other fields pass through unchanged.
|
|
19
|
+
*/
|
|
20
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
21
|
+
exports.toRustPhenotype = toRustPhenotype;
|
|
22
|
+
const HEX_32_BYTES = /^[0-9a-fA-F]{64}$/;
|
|
23
|
+
function hexToBytes(hex) {
|
|
24
|
+
const bytes = [];
|
|
25
|
+
for (let i = 0; i < 64; i += 2)
|
|
26
|
+
bytes.push(parseInt(hex.slice(i, i + 2), 16));
|
|
27
|
+
return bytes;
|
|
28
|
+
}
|
|
29
|
+
function toEpochMillis(value) {
|
|
30
|
+
if (typeof value === "number") {
|
|
31
|
+
return Number.isSafeInteger(value) && value >= 0 ? value : undefined;
|
|
32
|
+
}
|
|
33
|
+
if (typeof value === "string") {
|
|
34
|
+
const ms = Date.parse(value);
|
|
35
|
+
return Number.isFinite(ms) && ms >= 0 ? ms : undefined;
|
|
36
|
+
}
|
|
37
|
+
return undefined;
|
|
38
|
+
}
|
|
39
|
+
/**
|
|
40
|
+
* @param geneId maps a dependency given by gene name to its gene id, using the
|
|
41
|
+
* same derivation as the gene entries passed alongside the phenotype.
|
|
42
|
+
*/
|
|
43
|
+
function toRustPhenotype(phenotype, geneId) {
|
|
44
|
+
const { irHash, createdAt, dependencies, ...rest } = phenotype;
|
|
45
|
+
const out = { ...rest };
|
|
46
|
+
if (typeof irHash === "string" && HEX_32_BYTES.test(irHash)) {
|
|
47
|
+
out.irHash = hexToBytes(irHash);
|
|
48
|
+
}
|
|
49
|
+
const ms = toEpochMillis(createdAt);
|
|
50
|
+
if (ms !== undefined)
|
|
51
|
+
out.createdAt = ms;
|
|
52
|
+
if (Array.isArray(dependencies)) {
|
|
53
|
+
out.dependencies = dependencies
|
|
54
|
+
.filter((d) => typeof d === "string" && d.length > 0)
|
|
55
|
+
.map((d) => hexToBytes(HEX_32_BYTES.test(d) ? d : geneId(d)));
|
|
56
|
+
}
|
|
57
|
+
return out;
|
|
58
|
+
}
|
|
59
|
+
//# sourceMappingURL=rust-phenotype.js.map
|
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@@ -0,0 +1 @@
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
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{
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2
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"name": "@rotifer/playground",
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3
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-
"version": "0.
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3
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"version": "0.28.0",
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4
4
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"description": "Rotifer Protocol Playground — local development environment for gene development, Arena competition, and protocol simulation",
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5
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"license": "Apache-2.0",
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"author": "Rotifer Protocol Contributors",
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@@ -92,10 +92,10 @@
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},
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"optionalDependencies": {
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94
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"@rolldown/binding-linux-x64-gnu": "1.1.1",
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95
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-
"@rotifer/playground-darwin-arm64": "0.
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96
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-
"@rotifer/playground-darwin-x64": "0.
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97
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-
"@rotifer/playground-linux-x64-gnu": "0.
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98
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-
"@rotifer/playground-win32-x64-msvc": "0.
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95
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+
"@rotifer/playground-darwin-arm64": "0.28.0",
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96
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+
"@rotifer/playground-darwin-x64": "0.28.0",
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97
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"@rotifer/playground-linux-x64-gnu": "0.28.0",
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98
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"@rotifer/playground-win32-x64-msvc": "0.28.0"
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},
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100
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"engines": {
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101
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"node": ">=22.18.0"
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