@rotifer/playground 0.2.0-alpha.1 → 0.4.0-alpha.1

package/dist/commands/arena-watch.js

@@ -44,6 +44,7 @@ const node_crypto_1 = require("node:crypto");
 const chalk_1 = __importDefault(require("chalk"));
 const display = __importStar(require("../utils/display.js"));
 const config_js_1 = require("../utils/config.js");
+const client_js_1 = require("../cloud/client.js");
 function loadRankings(root, genesDir, domainFilter) {
     if (!(0, node_fs_1.existsSync)(genesDir))
         return [];
@@ -158,12 +159,17 @@ exports.arenaWatchCommand = new commander_1.Command("watch")
     .description("Watch Arena rankings in real-time (live updates)")
     .argument("<domain>", "domain to watch (or 'all' for all domains)")
     .option("--interval <ms>", "refresh interval in milliseconds", "5000")
+    .option("--cloud", "watch cloud Arena rankings", false)
     .action(async (domain, options) => {
+    const intervalMs = parseInt(options.interval, 10);
+    const domainFilter = domain === "all" ? undefined : domain;
+    if (options.cloud) {
+        await watchCloudArena(domainFilter, intervalMs);
+        return;
+    }
     const root = (0, config_js_1.getProjectRoot)();
     const config = (0, config_js_1.loadConfig)(root);
     const genesDir = (0, node_path_1.join)(root, config.genes_dir);
-    const intervalMs = parseInt(options.interval, 10);
-    const domainFilter = domain === "all" ? undefined : domain;
     display.header("Arena Watch" + (domainFilter ? ` \u2014 ${domainFilter}` : ""));
     display.info(`Refreshing every ${intervalMs}ms \u2014 press Ctrl+C to stop`);
     console.log();
@@ -207,4 +213,92 @@ exports.arenaWatchCommand = new commander_1.Command("watch")
     process.on("SIGINT", shutdown);
     process.on("SIGTERM", shutdown);
 });
+async function watchCloudArena(domainFilter, intervalMs = 5000) {
+    display.header("Cloud Arena Watch" + (domainFilter ? ` \u2014 ${domainFilter}` : ""));
+    display.info(`Polling every ${intervalMs}ms \u2014 press Ctrl+C to stop`);
+    console.log();
+    let prevEntries = [];
+    let pollCount = 0;
+    let totalChanges = 0;
+    const startTime = Date.now();
+    try {
+        const initial = await (0, client_js_1.arenaRankings)({ domain: domainFilter });
+        prevEntries = initial.rankings;
+        renderCloudTable(prevEntries);
+        console.log();
+    }
+    catch (err) {
+        display.error(`Failed to fetch cloud rankings: ${err.message}`);
+        process.exit(1);
+    }
+    const timer = setInterval(async () => {
+        pollCount++;
+        try {
+            const result = await (0, client_js_1.arenaRankings)({ domain: domainFilter });
+            const currEntries = result.rankings;
+            const changes = [];
+            const prevMap = new Map(prevEntries.map((e) => [e.gene_id, e]));
+            for (const curr of currEntries) {
+                const prev = prevMap.get(curr.gene_id);
+                if (!prev) {
+                    changes.push(chalk_1.default.green(`  + NEW  ${padRight(curr.gene_name, 24)} rank #${curr.rank}`));
+                }
+                else if (curr.rank < prev.rank) {
+                    changes.push(chalk_1.default.green(`  \u2191 UP   ${padRight(curr.gene_name, 24)} #${prev.rank} \u2192 #${curr.rank}`));
+                }
+                else if (curr.rank > prev.rank) {
+                    changes.push(chalk_1.default.red(`  \u2193 DOWN ${padRight(curr.gene_name, 24)} #${prev.rank} \u2192 #${curr.rank}`));
+                }
+            }
+            if (changes.length > 0) {
+                totalChanges += changes.length;
+                const ts = new Date().toLocaleTimeString();
+                console.log(chalk_1.default.dim(`  \u2500\u2500 ${ts} \u2500\u2500  ${changes.length} change(s)`));
+                changes.forEach((c) => console.log(c));
+                console.log();
+            }
+            prevEntries = currEntries;
+        }
+        catch {
+            // network error — skip this poll
+        }
+    }, intervalMs);
+    const shutdown = () => {
+        clearInterval(timer);
+        const elapsed = ((Date.now() - startTime) / 1000).toFixed(0);
+        console.log();
+        display.header("Cloud Watch Summary");
+        display.keyValue("Duration", `${elapsed}s`);
+        display.keyValue("Polls", String(pollCount));
+        display.keyValue("Total changes", String(totalChanges));
+        display.keyValue("Final gene count", String(prevEntries.length));
+        console.log();
+        process.exit(0);
+    };
+    process.on("SIGINT", shutdown);
+    process.on("SIGTERM", shutdown);
+}
+function renderCloudTable(entries) {
+    const col = { rank: 4, name: 22, owner: 14, domain: 14, fg: 9, vg: 9, fidelity: 10 };
+    console.log("  " +
+        padRight("#", col.rank) +
+        padRight("Name", col.name) +
+        padRight("Owner", col.owner) +
+        padRight("Domain", col.domain) +
+        padRight("F(g)", col.fg) +
+        padRight("V(g)", col.vg) +
+        "Fidelity");
+    console.log("  " + "\u2500".repeat(82));
+    for (const e of entries) {
+        const fidelityColor = e.fidelity === "Native" ? chalk_1.default.green : chalk_1.default.dim;
+        console.log("  " +
+            padRight(String(e.rank), col.rank) +
+            padRight(e.gene_name, col.name) +
+            padRight(e.owner, col.owner) +
+            padRight(e.domain, col.domain) +
+            padRight(e.fitness.toFixed(4), col.fg) +
+            padRight(e.safety.toFixed(4), col.vg) +
+            fidelityColor(e.fidelity));
+    }
+}
 //# sourceMappingURL=arena-watch.js.map

package/dist/commands/arena-watch.js.map

@@ -1 +1 @@
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package/dist/commands/compile.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"compile.d.ts","sourceRoot":"","sources":["../../src/commands/compile.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AASpC,eAAO,MAAM,cAAc,SAsMvB,CAAC"}
+{"version":3,"file":"compile.d.ts","sourceRoot":"","sources":["../../src/commands/compile.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAUpC,eAAO,MAAM,cAAc,SAwNvB,CAAC"}

package/dist/commands/compile.js

@@ -42,11 +42,13 @@ const display = __importStar(require("../utils/display.js"));
 const config_js_1 = require("../utils/config.js");
 const binding_js_1 = require("../utils/binding.js");
 const case_js_1 = require("../utils/case.js");
+const javy_compiler_js_1 = require("../utils/javy-compiler.js");
 exports.compileCommand = new commander_1.Command("compile")
     .description("Compile a gene to Rotifer IR (WASM + custom sections)")
     .argument("[name]", "gene name to compile")
     .option("--check", "validate only, don't produce artifacts", false)
     .option("--wasm <path>", "path to pre-compiled .wasm file to wrap as IR")
+    .option("--lang <ts|wasm>", "force compilation mode (auto-detected by default)")
     .action(async (name, options) => {
     const root = (0, config_js_1.getProjectRoot)();
     const config = (0, config_js_1.loadConfig)(root);
@@ -90,9 +92,6 @@ exports.compileCommand = new commander_1.Command("compile")
         return;
     }
     let wasmBytes = null;
-    const wasmPath = options.wasm
-        ? options.wasm
-        : (0, node_path_1.join)(geneDir, "gene.wasm");
     if (options.wasm) {
         if (!(0, node_fs_1.existsSync)(options.wasm)) {
             display.rustStyleError({
@@ -109,11 +108,33 @@ exports.compileCommand = new commander_1.Command("compile")
         wasmBytes = (0, node_fs_1.readFileSync)((0, node_path_1.join)(geneDir, "gene.wasm"));
         display.info("Using existing gene.wasm");
     }
+    else {
+        // Auto-detect TypeScript/JavaScript gene source → compile via Javy
+        const geneSrc = (0, javy_compiler_js_1.findGeneSource)(geneDir);
+        if (geneSrc && (options.lang === "ts" || !options.lang)) {
+            display.info("TypeScript gene detected — compiling to Native WASM via Javy");
+            console.log();
+            const wasmOutput = (0, node_path_1.join)(geneDir, "gene.wasm");
+            try {
+                (0, javy_compiler_js_1.compileTypeScriptToWasm)(geneSrc, wasmOutput);
+                wasmBytes = (0, node_fs_1.readFileSync)(wasmOutput);
+            }
+            catch (err) {
+                display.rustStyleError({
+                    code: "E0024",
+                    message: `TypeScript → WASM compilation failed: ${err.message}`,
+                    suggestion: "Ensure esbuild and javy-cli are installed: npm i -g esbuild && npx javy-cli --version",
+                });
+                process.exit(1);
+            }
+            console.log();
+        }
+    }
     if (!wasmBytes) {
-        display.warn("No .wasm file found — producing Wrapped fidelity result");
+        display.warn("No .wasm or source file found — producing Wrapped fidelity result");
         display.info("To compile to Native fidelity:");
-        display.info("  1. Compile your gene source to WASM (wasm-pack, AssemblyScript, etc.)");
-        display.info("  2. Run: rotifer compile " + name + " --wasm path/to/gene.wasm");
+        display.info("  • Write a gene in TypeScript and rotifer will compile it automatically");
+        display.info("  • Or provide pre-compiled WASM: rotifer compile " + name + " --wasm path/to/gene.wasm");
         console.log();
         const compileResult = {
             geneId,
@@ -153,7 +174,7 @@ exports.compileCommand = new commander_1.Command("compile")
             display.rustStyleError({
                 code: "E0023",
                 message: `IR compilation failed: ${err.message}`,
-                suggestion: "Ensure the WASM module exports `express(i32,i32)->i32` and `memory`",
+                suggestion: "Ensure the WASM module exports `express(i32,i32)->i32` + `memory`, or `_start` + `memory` (WASI)",
             });
             process.exit(1);
         }

package/dist/commands/compile.js.map

@@ -1 +1 @@
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+{"version":3,"file":"compile.js","sourceRoot":"","sources":["../../src/commands/compile.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,yCAAoC;AACpC,qCAAkE;AAClE,yCAAiC;AACjC,6CAAyC;AACzC,6DAA+C;AAC/C,kDAAgE;AAChE,oDAAqD;AACrD,8CAA+C;AAC/C,gEAAoF;AAEvE,QAAA,cAAc,GAAG,IAAI,mBAAO,CAAC,SAAS,CAAC;KACjD,WAAW,CAAC,uDAAuD,CAAC;KACpE,QAAQ,CAAC,QAAQ,EAAE,sBAAsB,CAAC;KAC1C,MAAM,CAAC,SAAS,EAAE,wCAAwC,EAAE,KAAK,CAAC;KAClE,MAAM,CAAC,eAAe,EAAE,+CAA+C,CAAC;KACxE,MAAM,CAAC,kBAAkB,EAAE,mDAAmD,CAAC;KAC/E,MAAM,CAAC,KAAK,EAAE,IAAwB,EAAE,OAAyD,EAAE,EAAE;IACpG,MAAM,IAAI,GAAG,IAAA,0BAAc,GAAE,CAAC;IAC9B,MAAM,MAAM,GAAG,IAAA,sBAAU,EAAC,IAAI,CAAC,CAAC;IAChC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAE7B,OAAO,CAAC,MAAM,CAAC,iCAAiC,CAAC,CAAC;IAElD,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,OAAO,CAAC,KAAK,CAAC,kDAAkD,CAAC,CAAC;QAClE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,OAAO,GAAG,IAAA,gBAAI,EAAC,IAAI,EAAE,MAAM,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC;IACnD,MAAM,aAAa,GAAG,IAAA,gBAAI,EAAC,OAAO,EAAE,gBAAgB,CAAC,CAAC;IAEtD,IAAI,CAAC,IAAA,oBAAU,EAAC,aAAa,CAAC,EAAE,CAAC;QAC/B,OAAO,CAAC,cAAc,CAAC;YACrB,IAAI,EAAE,OAAO;YACb,OAAO,EAAE,SAAS,IAAI,4BAA4B;YAClD,IAAI,EAAE,aAAa;YACnB,UAAU,EAAE,oBAAoB,GAAG,IAAI,GAAG,SAAS;SACpD,CAAC,CAAC;QACH,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,IAAA,sBAAY,EAAC,aAAa,EAAE,OAAO,CAAC,CAAC,CAAC;IAEnE,OAAO,CAAC,IAAI,CAAC,yBAAyB,CAAC,CAAC;IACxC,MAAM,cAAc,GAAG,CAAC,QAAQ,EAAE,aAAa,EAAE,cAAc,EAAE,SAAS,CAAC,CAAC;IAC5E,KAAK,MAAM,KAAK,IAAI,cAAc,EAAE,CAAC;QACnC,IAAI,CAAC,CAAC,KAAK,IAAI,SAAS,CAAC,EAAE,CAAC;YAC1B,OAAO,CAAC,cAAc,CAAC;gBACrB,IAAI,EAAE,OAAO;gBACb,OAAO,EAAE,qCAAqC,KAAK,EAAE;gBACrD,IAAI,EAAE,aAAa;gBACnB,UAAU,EAAE,QAAQ,KAAK,QAAQ,aAAa,EAAE;aACjD,CAAC,CAAC;YACH,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAClB,CAAC;IACH,CAAC;IACD,OAAO,CAAC,OAAO,CAAC,6BAA6B,CAAC,CAAC;IAE/C,MAAM,QAAQ,GAAG,IAAI,CAAC,SAAS,CAAC,IAAA,qBAAW,EAAC,SAAS,CAAC,CAAC,CAAC;IACxD,MAAM,MAAM,GAAG,IAAA,wBAAU,EAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;IAEnE,IAAI,OAAO,CAAC,KAAK,EAAE,CAAC;QAClB,OAAO,CAAC,OAAO,CAAC,0BAA0B,IAAI,GAAG,CAAC,CAAC;QACnD,OAAO,CAAC,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;QACpD,OAAO;IACT,CAAC;IAED,IAAI,SAAS,GAAkB,IAAI,CAAC;IAEpC,IAAI,OAAO,CAAC,IAAI,EAAE,CAAC;QACjB,IAAI,CAAC,IAAA,oBAAU,EAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;YAC9B,OAAO,CAAC,cAAc,CAAC;gBACrB,IAAI,EAAE,OAAO;gBACb,OAAO,EAAE,wBAAwB,OAAO,CAAC,IAAI,EAAE;gBAC/C,UAAU,EAAE,+DAA+D;aAC5E,CAAC,CAAC;YACH,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAClB,CAAC;QACD,SAAS,GAAG,IAAA,sBAAY,EAAC,OAAO,CAAC,IAAI,CAAW,CAAC;QACjD,OAAO,CAAC,IAAI,CAAC,4BAA4B,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC;IAC3D,CAAC;SAAM,IAAI,IAAA,oBAAU,EAAC,IAAA,gBAAI,EAAC,OAAO,EAAE,WAAW,CAAC,CAAC,EAAE,CAAC;QAClD,SAAS,GAAG,IAAA,sBAAY,EAAC,IAAA,gBAAI,EAAC,OAAO,EAAE,WAAW,CAAC,CAAW,CAAC;QAC/D,OAAO,CAAC,IAAI,CAAC,0BAA0B,CAAC,CAAC;IAC3C,CAAC;SAAM,CAAC;QACN,mEAAmE;QACnE,MAAM,OAAO,GAAG,IAAA,iCAAc,EAAC,OAAO,CAAC,CAAC;QACxC,IAAI,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,KAAK,IAAI,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;YACxD,OAAO,CAAC,IAAI,CAAC,8DAA8D,CAAC,CAAC;YAC7E,OAAO,CAAC,GAAG,EAAE,CAAC;YACd,MAAM,UAAU,GAAG,IAAA,gBAAI,EAAC,OAAO,EAAE,WAAW,CAAC,CAAC;YAC9C,IAAI,CAAC;gBACH,IAAA,0CAAuB,EAAC,OAAO,EAAE,UAAU,CAAC,CAAC;gBAC7C,SAAS,GAAG,IAAA,sBAAY,EAAC,UAAU,CAAW,CAAC;YACjD,CAAC;YAAC,OAAO,GAAQ,EAAE,CAAC;gBAClB,OAAO,CAAC,cAAc,CAAC;oBACrB,IAAI,EAAE,OAAO;oBACb,OAAO,EAAE,yCAAyC,GAAG,CAAC,OAAO,EAAE;oBAC/D,UAAU,EAAE,uFAAuF;iBACpG,CAAC,CAAC;gBACH,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAClB,CAAC;YACD,OAAO,CAAC,GAAG,EAAE,CAAC;QAChB,CAAC;IACH,CAAC;IAED,IAAI,CAAC,SAAS,EAAE,CAAC;QACf,OAAO,CAAC,IAAI,CAAC,mEAAmE,CAAC,CAAC;QAClF,OAAO,CAAC,IAAI,CAAC,gCAAgC,CAAC,CAAC;QAC/C,OAAO,CAAC,IAAI,CAAC,0EAA0E,CAAC,CAAC;QACzF,OAAO,CAAC,IAAI,CAAC,oDAAoD,GAAG,IAAI,GAAG,2BAA2B,CAAC,CAAC;QACxG,OAAO,CAAC,GAAG,EAAE,CAAC;QAEd,MAAM,aAAa,GAAG;YACpB,MAAM;YACN,IAAI;YACJ,MAAM,EAAE,SAAS,CAAC,MAAM;YACxB,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACpC,QAAQ,EAAE,SAAS;YACnB,aAAa,EAAE,KAAK;YACpB,MAAM,EAAE,IAAI;YACZ,SAAS,EAAE,CAAC;YACZ,eAAe,EAAE,CAAC;YAClB,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;SACnC,CAAC;QAEF,IAAA,uBAAa,EACX,IAAA,gBAAI,EAAC,OAAO,EAAE,sBAAsB,CAAC,EACrC,IAAI,CAAC,SAAS,CAAC,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,IAAI,CAC9C,CAAC;QAEF,OAAO,CAAC,OAAO,CAAC,SAAS,IAAI,gCAAgC,CAAC,CAAC;QAC/D,OAAO,CAAC,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;QACpD,OAAO,CAAC,QAAQ,CAAC,QAAQ,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;QAC7C,OAAO,CAAC,QAAQ,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACxC,OAAO;IACT,CAAC;IAED,OAAO,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC;IAC3C,OAAO,CAAC,IAAI,CAAC,iBAAiB,CAAC,SAAS,CAAC,MAAM,GAAG,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;IAEzE,MAAM,UAAU,GAAG,IAAA,gBAAI,EAAC,OAAO,EAAE,cAAc,CAAC,CAAC;IAEjD,MAAM,OAAO,GAAG,IAAA,2BAAc,GAAE,CAAC;IAEjC,IAAI,MAAc,CAAC;IACnB,IAAI,SAAiB,CAAC;IACtB,IAAI,eAAuB,CAAC;IAE5B,IAAI,OAAO,EAAE,CAAC;QACZ,OAAO,CAAC,IAAI,CAAC,mCAAmC,CAAC,CAAC;QAClD,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,OAAO,CAAC,iBAAiB,CAAC,SAAS,EAAE,QAAQ,EAAE,UAAU,CAAC,CAAC;YAC1E,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC;YACvB,SAAS,GAAG,MAAM,CAAC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package/dist/commands/install.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare const installCommand: Command;
+//# sourceMappingURL=install.d.ts.map

package/dist/commands/install.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"install.d.ts","sourceRoot":"","sources":["../../src/commands/install.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAWpC,eAAO,MAAM,cAAc,SAyEvB,CAAC"}

package/dist/commands/install.js

@@ -0,0 +1,94 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.installCommand = void 0;
+const commander_1 = require("commander");
+const node_fs_1 = require("node:fs");
+const node_path_1 = require("node:path");
+const display = __importStar(require("../utils/display.js"));
+const config_js_1 = require("../utils/config.js");
+const client_js_1 = require("../cloud/client.js");
+exports.installCommand = new commander_1.Command("install")
+    .description("Install a gene from Rotifer Cloud")
+    .argument("<gene-id>", "cloud gene ID to install")
+    .option("--force", "overwrite if gene already exists locally", false)
+    .action(async (geneId, options) => {
+    display.header("Install from Cloud");
+    const root = (0, config_js_1.getProjectRoot)();
+    const config = (0, config_js_1.loadConfig)(root);
+    try {
+        display.info("Fetching gene metadata...");
+        const gene = await (0, client_js_1.getGene)(geneId);
+        const geneDir = (0, node_path_1.join)(root, config.genes_dir, gene.name);
+        if ((0, node_fs_1.existsSync)(geneDir) && !options.force) {
+            display.rustStyleError({
+                code: "E0051",
+                message: `Gene '${gene.name}' already exists locally`,
+                file: geneDir,
+                suggestion: "Use --force to overwrite, or rename the existing gene",
+            });
+            process.exit(1);
+        }
+        (0, node_fs_1.mkdirSync)(geneDir, { recursive: true });
+        (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, "phenotype.json"), JSON.stringify(gene.phenotype, null, 2) + "\n");
+        display.success("Phenotype saved");
+        if (gene.wasm_url) {
+            display.info("Downloading WASM binary...");
+            const wasmBytes = await (0, client_js_1.downloadGeneWasm)(gene.wasm_url);
+            (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, "gene.ir.wasm"), wasmBytes);
+            display.success(`WASM downloaded (${(wasmBytes.length / 1024).toFixed(1)}KB)`);
+        }
+        (0, node_fs_1.writeFileSync)((0, node_path_1.join)(geneDir, ".cloud-manifest.json"), JSON.stringify({
+            cloud_id: gene.id,
+            owner: gene.owner,
+            version: gene.version,
+            installed_at: new Date().toISOString(),
+        }, null, 2) + "\n");
+        console.log();
+        display.success(`Gene '${gene.name}' installed!`);
+        display.keyValue("From", `${gene.owner}/${gene.name}@${gene.version}`);
+        display.keyValue("Domain", gene.domain);
+        display.keyValue("Fidelity", gene.fidelity);
+        display.keyValue("Location", geneDir);
+        console.log();
+        display.info("Test it: rotifer test " + gene.name);
+        display.info("Submit to local Arena: rotifer arena submit " + gene.name);
+    }
+    catch (err) {
+        display.error(err.message || "Install failed");
+        process.exit(1);
+    }
+});
+//# sourceMappingURL=install.js.map

package/dist/commands/install.js.map

@@ -0,0 +1 @@
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package/dist/commands/login.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare const loginCommand: Command;
+//# sourceMappingURL=login.d.ts.map

package/dist/commands/login.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"login.d.ts","sourceRoot":"","sources":["../../src/commands/login.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAYpC,eAAO,MAAM,YAAY,SAiHrB,CAAC"}

package/dist/commands/login.js

@@ -0,0 +1,133 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.loginCommand = void 0;
+const commander_1 = require("commander");
+const node_child_process_1 = require("node:child_process");
+const display = __importStar(require("../utils/display.js"));
+const auth_js_1 = require("../cloud/auth.js");
+const client_js_1 = require("../cloud/client.js");
+exports.loginCommand = new commander_1.Command("login")
+    .description("Log in to Rotifer Cloud via GitHub OAuth")
+    .option("--endpoint <url>", "cloud endpoint URL")
+    .action(async (options) => {
+    display.header("Rotifer Cloud Login");
+    const existing = (0, auth_js_1.loadCredentials)();
+    if (existing) {
+        display.success(`Already logged in as ${existing.user.username}`);
+        display.info("Run 'rotifer logout' to switch accounts");
+        return;
+    }
+    const config = (0, client_js_1.loadCloudConfig)();
+    const endpoint = options.endpoint || config.endpoint;
+    display.info("Opening browser for GitHub authorization...");
+    const callbackPort = 9876;
+    const codeVerifier = (0, auth_js_1.generateCodeVerifier)();
+    const codeChallenge = (0, auth_js_1.generateCodeChallenge)(codeVerifier);
+    const authUrl = `${endpoint}/auth/v1/authorize?provider=github` +
+        `&redirect_to=http://localhost:${callbackPort}/callback` +
+        `&code_challenge=${codeChallenge}` +
+        `&code_challenge_method=S256`;
+    const openCmd = process.platform === "darwin"
+        ? "open"
+        : process.platform === "win32"
+            ? "start"
+            : "xdg-open";
+    (0, node_child_process_1.exec)(`${openCmd} "${authUrl}"`);
+    display.info("Waiting for authorization (timeout: 120s)...");
+    try {
+        const callbackResult = await (0, auth_js_1.waitForOAuthCallback)(callbackPort);
+        let accessToken;
+        let refreshToken;
+        if (callbackResult.startsWith("implicit:")) {
+            const parts = callbackResult.split(":");
+            accessToken = parts.slice(1, -1).join(":");
+            refreshToken = parts[parts.length - 1];
+            display.info("Received token via implicit flow");
+        }
+        else {
+            display.info("Exchanging authorization code for token...");
+            const tokenRes = await fetch(`${endpoint}/auth/v1/token?grant_type=pkce`, {
+                method: "POST",
+                headers: {
+                    "Content-Type": "application/json",
+                    apikey: config.anonKey,
+                },
+                body: JSON.stringify({
+                    auth_code: callbackResult,
+                    code_verifier: codeVerifier,
+                }),
+            });
+            if (!tokenRes.ok) {
+                const err = await tokenRes.text();
+                display.error(`Authentication failed: ${err}`);
+                process.exit(1);
+            }
+            const tokenData = (await tokenRes.json());
+            accessToken = tokenData.access_token;
+            refreshToken = tokenData.refresh_token;
+        }
+        const userRes = await fetch(`${endpoint}/auth/v1/user`, {
+            headers: {
+                Authorization: `Bearer ${accessToken}`,
+                apikey: config.anonKey,
+            },
+        });
+        const userData = (await userRes.json());
+        const meta = userData.user_metadata || {};
+        (0, auth_js_1.saveCredentials)({
+            access_token: accessToken,
+            refresh_token: refreshToken,
+            expires_at: Date.now() + 3600 * 1000,
+            user: {
+                id: userData.id,
+                username: meta.user_name || meta.preferred_username || "unknown",
+                avatar_url: meta.avatar_url || null,
+                github_id: meta.provider_id
+                    ? parseInt(meta.provider_id, 10)
+                    : 0,
+            },
+        });
+        console.log();
+        display.success(`Logged in as ${meta.user_name || meta.preferred_username || "user"}`);
+        display.keyValue("Endpoint", endpoint);
+        display.info("You can now use 'rotifer publish', 'rotifer search', etc.");
+    }
+    catch (err) {
+        display.error(err.message || "Login failed");
+        process.exit(1);
+    }
+});
+//# sourceMappingURL=login.js.map

package/dist/commands/login.js.map

@@ -0,0 +1 @@
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package/dist/commands/logout.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare const logoutCommand: Command;
+//# sourceMappingURL=logout.d.ts.map

package/dist/commands/logout.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"logout.d.ts","sourceRoot":"","sources":["../../src/commands/logout.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAIpC,eAAO,MAAM,aAAa,SActB,CAAC"}

package/dist/commands/logout.js

@@ -0,0 +1,53 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.logoutCommand = void 0;
+const commander_1 = require("commander");
+const display = __importStar(require("../utils/display.js"));
+const auth_js_1 = require("../cloud/auth.js");
+exports.logoutCommand = new commander_1.Command("logout")
+    .description("Log out from Rotifer Cloud")
+    .action(async () => {
+    display.header("Rotifer Cloud Logout");
+    const creds = (0, auth_js_1.loadCredentials)();
+    if (!creds) {
+        display.warn("Not currently logged in");
+        return;
+    }
+    const username = creds.user.username;
+    (0, auth_js_1.clearCredentials)();
+    display.success(`Logged out from ${username}`);
+});
+//# sourceMappingURL=logout.js.map

package/dist/commands/logout.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"logout.js","sourceRoot":"","sources":["../../src/commands/logout.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,yCAAoC;AACpC,6DAA+C;AAC/C,8CAAqE;AAExD,QAAA,aAAa,GAAG,IAAI,mBAAO,CAAC,QAAQ,CAAC;KAC/C,WAAW,CAAC,4BAA4B,CAAC;KACzC,MAAM,CAAC,KAAK,IAAI,EAAE;IACjB,OAAO,CAAC,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAEvC,MAAM,KAAK,GAAG,IAAA,yBAAe,GAAE,CAAC;IAChC,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,CAAC,IAAI,CAAC,yBAAyB,CAAC,CAAC;QACxC,OAAO;IACT,CAAC;IAED,MAAM,QAAQ,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC;IACrC,IAAA,0BAAgB,GAAE,CAAC;IACnB,OAAO,CAAC,OAAO,CAAC,mBAAmB,QAAQ,EAAE,CAAC,CAAC;AACjD,CAAC,CAAC,CAAC"}

package/dist/commands/publish.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare const publishCommand: Command;
+//# sourceMappingURL=publish.d.ts.map

package/dist/commands/publish.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"publish.d.ts","sourceRoot":"","sources":["../../src/commands/publish.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAQpC,eAAO,MAAM,cAAc,SAgGvB,CAAC"}