@rotifer/playground 0.1.0-alpha.2 → 0.3.0-alpha.1

package/CHANGELOG.md

@@ -5,6 +5,65 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.3.0-alpha.1] - 2026-02-17
+
+### Added
+
+- **TS→WASM Auto-Compilation** (Javy / QuickJS)
+  - `rotifer compile` auto-detects `index.ts`/`index.js` and compiles to Native WASM
+  - Pipeline: TypeScript → esbuild (bundle) → WASI shim → Javy (QuickJS→WASM) → Rotifer IR
+  - New `--lang <ts|wasm>` option to force compilation mode
+  - `javy-compiler.ts` utility with `compileTypeScriptToWasm()`, `isJavyAvailable()`, `findGeneSource()`
+
+- **WASI Sandbox Support** (`rotifer-core::sandbox`)
+  - `WasmtimeSandbox` now supports both Direct (`express`) and WASI (`_start`) execution modes
+  - Minimal WASI shim: 9 host functions (`fd_read`, `fd_write`, `clock_time_get`, etc.)
+  - Auto-detection of WASI vs Direct modules at runtime
+
+- **IR Verifier Updates**
+  - SIMD instructions downgraded from error to warning (common in Javy/QuickJS output)
+  - `_start` entry point accepted alongside `express` for WASI modules
+
+### Changed
+
+- Test coverage: 180 → 275 tests (91 TypeScript + 184 Rust)
+- Documentation updated across README (EN/ZH), Getting Started (EN/ZH), and website
+
+[0.3.0-alpha.1]: https://github.com/rotifer-protocol/rotifer-playground/releases/tag/v0.3.0-alpha.1
+
+## [0.2.0-alpha.1] - 2026-02-22
+
+### Added
+
+- **IR Compiler Pipeline** (`rotifer-core::compiler`)
+  - Custom section builders: `rotifer.version`, `rotifer.phenotype`, `rotifer.constraints`, `rotifer.metering`
+  - WASM injector with `irHash` computation (SHA-256 content-addressable)
+  - IR verifier: static validation of exports, prohibited instructions, memory limits
+  - 5 genesis WASM genes: `echo`, `wrap`, `search`, `summarize`, `translate`
+  - `compile_to_ir()` API and NAPI bindings
+
+- **CLI Upgrades**
+  - `rotifer compile` — full IR compilation with `--wasm`, phenotype update, `compile-result.json`
+  - `rotifer arena watch` — real-time ranking diff monitoring with summaries
+
+- **Algebra Parallelism**
+  - `Par` operator now uses true CPU parallelism via `std::thread::scope`
+
+- **crates.io Publish**
+  - `rotifer-core` published as an independent Rust crate
+  - Full rustdoc coverage on all 150+ public API items
+
+### Fixed
+
+- `Try` operator: now correctly returns primary result on success (was re-executing)
+
+### Changed
+
+- Test coverage: 22 → 180 tests across 10 modules (including edge cases)
+- Dependencies: added `rmp-serde`, `wasm-encoder`, `wasmparser`
+
+[0.2.0-alpha.1]: https://github.com/rotifer-protocol/rotifer-playground/releases/tag/v0.2.0-alpha.1
+
 ## [0.1.0-alpha.1] - 2026-02-20
 
 ### Added
@@ -59,4 +118,4 @@ Implements Rotifer Protocol Specification v2.9 (Frozen):
 - **Simplified**: Agent Lifecycle, Gene Lifecycle, RotiferBinding
 - **Stub**: Formal Verification, Cross-Binding Consistency, ZK Proofs
 
-[0.1.0-alpha.1]: https://github.com/rotifer-protocol/playground/releases/tag/v0.1.0-alpha.1
+[0.1.0-alpha.1]: https://github.com/rotifer-protocol/rotifer-playground/releases/tag/v0.1.0-alpha.1

package/README.md

@@ -8,7 +8,7 @@
 
 Local development environment for the **Rotifer Protocol** — build genes, run Arena competitions, and simulate agent evolution.
 
-> **Status:** Alpha (v0.1.0-alpha.1). Core gene lifecycle is functional. WASM compilation and live Arena watching are planned for v0.2.
+> **Status:** Alpha (v0.3.0-alpha.1). Core gene lifecycle, IR compiler pipeline, parallel algebra, **TS→WASM auto-compilation (Javy)**, and live Arena watching are functional.
 
 ---
 
@@ -82,21 +82,31 @@ Your existing code becomes a gene and competes in the Arena.
 
 ### Act 3 — Hooked (30 minutes)
 
-Write a native gene, compile it, submit to Arena, and create an Agent:
+Write a TypeScript gene and compile it to Native WASM automatically:
 
 ```bash
-# Write a native gene (higher fidelity = higher fitness potential)
-mkdir genes/my-search && vim genes/my-search/index.ts
-
-rotifer compile my-search          # Validate Phenotype + fingerprint
+# Write a gene in TypeScript — same language, zero learning curve
+mkdir genes/my-search && cat > genes/my-search/index.ts << 'EOF'
+export function express(input: { query: string }) {
+  return { results: [`Found: ${input.query}`], total: 1 };
+}
+EOF
+
+rotifer wrap my-search --domain search
+rotifer compile my-search          # TS → JS → WASM (Javy) → Rotifer IR
 rotifer arena submit my-search     # Watch it climb the rankings
 rotifer arena list --domain search # Compare against Genesis genes
 
 # Create an Agent with a gene genome
 rotifer agent create search-bot --genes genesis-web-search my-search
 rotifer agent list
+
+# Run the Agent — sequential gene pipeline
+rotifer agent run search-bot --input '{"query":"rotifer protocol"}'
 ```
 
+**v0.3 highlight:** `rotifer compile` auto-detects TypeScript genes and compiles them to Native WASM via [Javy](https://github.com/bytecodealliance/javy) (QuickJS→WASM). No separate toolchain required.
+
 ---
 
 ## Architecture
@@ -107,12 +117,12 @@ playground/
 │   ├── rotifer-core/        Rust: types, sandbox, arena, algebra, fitness, storage
 │   └── rotifer-napi/        napi-rs bridge: Rust ↔ Node.js FFI
 ├── src/                     TypeScript CLI (commander.js)
-│   ├── commands/            10 CLI commands
-│   ├── utils/               Config, display formatting
+│   ├── commands/            11 CLI commands
+│   ├── utils/               Config, display, NAPI binding, Javy compiler
 │   └── errors/              Rust-style error formatting
 ├── genes/                   5 Genesis genes (bundled)
 ├── templates/               Gene + composition scaffolds
-└── tests/                   Unit + E2E test suites (29 tests)
+└── tests/                   Unit + E2E test suites (91 tests)
 ```
 
 ### Layers
@@ -121,7 +131,7 @@ playground/
 |-------|-----------|----------------|
 | **CLI** | TypeScript + commander.js | User interface, command routing, display |
 | **Bridge** | napi-rs (cdylib) | Rust-to-Node.js FFI binding |
-| **Core** | Rust + wasmtime | WASM sandbox, Arena engine, Algebra executor, Fitness computation, SQLite storage |
+| **Core** | Rust + wasmtime | WASM sandbox (Direct + WASI), Arena engine, Algebra executor, Fitness computation, SQLite storage |
 
 ---
 
@@ -133,12 +143,13 @@ playground/
 | `rotifer scan [path]` | Scan source files for candidate gene functions |
 | `rotifer wrap <name>` | Wrap a function as a Rotifer gene |
 | `rotifer test [name]` | Test a gene in L2 sandbox |
-| `rotifer compile [name]` | Compile a gene (validate + fingerprint) |
+| `rotifer compile [name]` | Compile gene to Rotifer IR (auto TS→WASM via Javy) |
 | `rotifer arena submit <name>` | Submit a gene to the Arena |
 | `rotifer arena list` | List Arena rankings |
 | `rotifer arena watch <domain>` | Watch Arena rankings (MVP: placeholder) |
 | `rotifer agent create <name>` | Create an Agent with a genome |
 | `rotifer agent list` | List all agents |
+| `rotifer agent run <name>` | Execute an agent's genome pipeline |
 
 ---
 
@@ -181,7 +192,7 @@ cd playground
 # TypeScript CLI
 npm install
 npm run build          # Build to dist/
-npm test               # Run 29 tests
+npm test               # Run 91 TypeScript tests
 npm run lint           # Type check only
 
 # Rust Core (requires Rust toolchain)
@@ -211,9 +222,9 @@ Changes driven by implementation feedback are proposed through the ADR process.
 ## Roadmap
 
 - [x] **v0.1.0-alpha.1** — Core CLI + Genesis genes + Arena
-- [ ] **v0.2.0** — WASM compilation pipeline, live Arena watching
-- [ ] **v0.3.0** — Agent gene execution, Seq/Par runtime
-- [ ] **v1.0.0** — Full protocol compliance, multi-binding support
+- [x] **v0.2.0-alpha.1** — IR compiler pipeline, live Arena watching, NAPI bridge, end-to-end demo loop
+- [x] **v0.3.0-alpha.1** — Frontend SDK: TS→WASM auto-compilation via Javy, WASI sandbox support
+- [ ] **v1.0.0** — Full protocol compliance, multi-binding support, P2P HLT
 
 ---
 

package/README.zh.md

@@ -8,7 +8,7 @@
 
 **Rotifer Protocol** 的本地开发环境——构建基因、运行 Arena 竞争、模拟代理进化。
 
-> **状态：** Alpha (v0.1.0-alpha.1)。核心基因生命周期已可用。WASM 编译和实时 Arena 观察计划在 v0.2 中实现。
+> **状态：** Alpha (v0.3.0-alpha.1)。核心基因生命周期、IR 编译器管线、并行代数、**TS→WASM 自动编译 (Javy)**、实时 Arena 观察已可用。
 
 ---
 
@@ -82,21 +82,31 @@ rotifer arena list                 # 查看你的基因排名
 
 ### 第三幕——Hooked（30 分钟）
 
-编写原生基因、编译、提交到 Arena，并创建 Agent：
+用 TypeScript 编写基因，自动编译为原生 WASM：
 
 ```bash
-# 编写原生基因（更高的保真度 = 更高的适应度潜力）
-mkdir genes/my-search && vim genes/my-search/index.ts
-
-rotifer compile my-search          # 验证 Phenotype + 生成指纹
+# 用 TypeScript 写基因——同一语言，零学习成本
+mkdir genes/my-search && cat > genes/my-search/index.ts << 'EOF'
+export function express(input: { query: string }) {
+  return { results: [`Found: ${input.query}`], total: 1 };
+}
+EOF
+
+rotifer wrap my-search --domain search
+rotifer compile my-search          # TS → JS → WASM (Javy) → Rotifer IR
 rotifer arena submit my-search     # 观察它攀升排名
 rotifer arena list --domain search # 与 Genesis 基因对比
 
 # 创建一个拥有基因组的 Agent
 rotifer agent create search-bot --genes genesis-web-search my-search
 rotifer agent list
+
+# 运行 Agent——顺序基因管道
+rotifer agent run search-bot --input '{"query":"rotifer protocol"}'
 ```
 
+**v0.3 亮点：** `rotifer compile` 自动检测 TypeScript 基因，通过 [Javy](https://github.com/bytecodealliance/javy)（QuickJS→WASM）编译为原生 WASM，无需额外工具链。
+
 ---
 
 ## 架构
@@ -107,12 +117,12 @@ playground/
 │   ├── rotifer-core/        Rust: 类型、沙箱、Arena、代数、适应度、存储
 │   └── rotifer-napi/        napi-rs 桥接: Rust ↔ Node.js FFI
 ├── src/                     TypeScript CLI (commander.js)
-│   ├── commands/            10 个 CLI 命令
-│   ├── utils/               配置、显示格式化
+│   ├── commands/            11 个 CLI 命令
+│   ├── utils/               配置、显示、NAPI 绑定、Javy 编译器
 │   └── errors/              Rust 风格的错误格式化
 ├── genes/                   5 个 Genesis 基因（内置）
 ├── templates/               基因 + 组合脚手架模板
-└── tests/                   单元测试 + E2E 测试（29 个测试）
+└── tests/                   单元测试 + E2E 测试（91 个测试）
 ```
 
 ### 分层
@@ -121,7 +131,7 @@ playground/
 |----|--------|------|
 | **CLI** | TypeScript + commander.js | 用户界面、命令路由、显示 |
 | **Bridge** | napi-rs (cdylib) | Rust 到 Node.js 的 FFI 绑定 |
-| **Core** | Rust + wasmtime | WASM 沙箱、Arena 引擎、Algebra 执行器、Fitness 计算、SQLite 存储 |
+| **Core** | Rust + wasmtime | WASM 沙箱（Direct + WASI）、Arena 引擎、Algebra 执行器、Fitness 计算、SQLite 存储 |
 
 ---
 
@@ -133,12 +143,13 @@ playground/
 | `rotifer scan [path]` | 扫描源文件中的候选基因函数 |
 | `rotifer wrap <name>` | 将函数包装为 Rotifer 基因 |
 | `rotifer test [name]` | 在 L2 沙箱中测试基因 |
-| `rotifer compile [name]` | 编译基因（验证 + 生成指纹） |
+| `rotifer compile [name]` | 编译基因为 Rotifer IR（自动 TS→WASM via Javy） |
 | `rotifer arena submit <name>` | 将基因提交到 Arena |
 | `rotifer arena list` | 列出 Arena 排名 |
 | `rotifer arena watch <domain>` | 观察 Arena 排名（MVP：占位符） |
 | `rotifer agent create <name>` | 创建拥有基因组的 Agent |
 | `rotifer agent list` | 列出所有 Agent |
+| `rotifer agent run <name>` | 执行 Agent 的基因组管道 |
 
 ---
 
@@ -181,7 +192,7 @@ cd playground
 # TypeScript CLI
 npm install
 npm run build          # 构建到 dist/
-npm test               # 运行 29 个测试
+npm test               # 运行 91 个 TypeScript 测试
 npm run lint           # 仅类型检查
 
 # Rust Core（需要 Rust 工具链）
@@ -211,9 +222,9 @@ bash demo.sh
 ## 路线图
 
 - [x] **v0.1.0-alpha.1** — 核心 CLI + Genesis 基因 + Arena
-- [ ] **v0.2.0** — WASM 编译管线、实时 Arena 观察
-- [ ] **v0.3.0** — Agent 基因执行、Seq/Par 运行时
-- [ ] **v1.0.0** — 完整协议合规、多绑定支持
+- [x] **v0.2.0-alpha.1** — IR 编译器管线、实时 Arena 观察、NAPI 桥接、端到端演示闭环
+- [x] **v0.3.0-alpha.1** — 前端 SDK：TS→WASM 自动编译 via Javy、WASI 沙箱支持
+- [ ] **v1.0.0** — 完整协议合规、多绑定支持、P2P HLT
 
 ---
 

package/dist/commands/agent-create.d.ts.map

@@ -1 +1 @@
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package/dist/commands/agent-create.js

@@ -44,6 +44,9 @@ exports.agentCreateCommand = new commander_1.Command("create")
     .description("Create a new Agent with a genome of genes")
     .argument("<name>", "agent name")
     .option("-g, --genes <genes...>", "gene names to include in genome")
+    .option("-d, --domain <domain>", "auto-select top genes from this domain")
+    .option("-n, --top <n>", "number of top genes to auto-select", "2")
+    .option("--strategy <strategy>", "gene selection strategy", "greedy")
     .action(async (name, options) => {
     const root = (0, config_js_1.getProjectRoot)();
     const config = (0, config_js_1.loadConfig)(root);
@@ -51,8 +54,10 @@ exports.agentCreateCommand = new commander_1.Command("create")
     const agentsDir = (0, node_path_1.join)(root, ".rotifer", "agents");
     (0, node_fs_1.mkdirSync)(agentsDir, { recursive: true });
     const agentId = (0, node_crypto_1.randomUUID)();
-    const genome = [];
-    if (options.genes) {
+    let genome = [];
+    let selectionMode = "manual";
+    if (options.genes && options.genes.length > 0) {
+        // Manual gene selection
         for (const geneName of options.genes) {
             const geneDir = (0, node_path_1.join)(root, config.genes_dir, geneName);
             if (!(0, node_fs_1.existsSync)((0, node_path_1.join)(geneDir, "phenotype.json"))) {
@@ -67,20 +72,78 @@ exports.agentCreateCommand = new commander_1.Command("create")
             genome.push(geneName);
         }
     }
+    else {
+        // Auto-select from Arena rankings
+        selectionMode = options.strategy;
+        const topN = parseInt(options.top, 10) || 2;
+        const ranked = getArenaRankings(root, config.genes_dir, options.domain);
+        if (ranked.length === 0) {
+            display.error("No genes found in Arena" +
+                (options.domain ? ` for domain '${options.domain}'` : "") +
+                ". Submit genes first: rotifer arena submit <gene>");
+            process.exit(1);
+        }
+        genome = ranked.slice(0, topN).map((r) => r.name);
+        display.info(`Auto-selected top ${genome.length} gene(s) from Arena` +
+            (options.domain ? ` (domain: ${options.domain})` : "") +
+            ` [strategy: ${selectionMode}]`);
+    }
+    const compositionType = genome.length >= 2 ? "Seq" : "Single";
     const agent = {
         id: agentId,
         name,
         state: "Active",
         genome,
+        composition: compositionType,
+        strategy: selectionMode,
         createdAt: new Date().toISOString(),
         reputation: 0.0,
     };
     (0, node_fs_1.writeFileSync)((0, node_path_1.join)(agentsDir, agentId + ".json"), JSON.stringify(agent, null, 2) + "\n");
     display.success(`Agent '${name}' created`);
-    display.keyValue("Agent ID", agentId);
+    display.keyValue("Agent ID", agentId.slice(0, 12) + "...");
     display.keyValue("State", agent.state);
-    display.keyValue("Genome", genome.length > 0 ? genome.join(", ") : "(empty)");
+    display.keyValue("Strategy", selectionMode);
+    display.keyValue("Genome", genome.length > 0
+        ? genome.join(" → ") + ` (${compositionType})`
+        : "(empty)");
     console.log();
+    if (genome.length >= 2) {
+        display.info(`Run: rotifer agent run ${name}  — execute the ${compositionType} pipeline`);
+    }
     display.info("View agents: rotifer agent list");
 });
+function getArenaRankings(root, genesDir, domainFilter) {
+    const dir = (0, node_path_1.join)(root, genesDir);
+    if (!(0, node_fs_1.existsSync)(dir))
+        return [];
+    const entries = [];
+    for (const name of (0, node_fs_1.readdirSync)(dir)) {
+        const phenotypePath = (0, node_path_1.join)(dir, name, "phenotype.json");
+        if (!(0, node_fs_1.existsSync)(phenotypePath))
+            continue;
+        try {
+            const phenotype = JSON.parse((0, node_fs_1.readFileSync)(phenotypePath, "utf-8"));
+            if (domainFilter && phenotype.domain !== domainFilter)
+                continue;
+            const phenoStr = JSON.stringify(phenotype);
+            const geneId = (0, node_crypto_1.createHash)("sha256").update(phenoStr).digest("hex");
+            const seed = parseInt(geneId.slice(0, 8), 16);
+            const isNative = phenotype.fidelity === "Native";
+            const baseFitness = isNative ? 0.7 : 0.45;
+            const variance = (seed % 250) / 1000;
+            entries.push({
+                name,
+                domain: phenotype.domain || "general",
+                fitness: Math.min(baseFitness + variance, 0.99),
+                fidelity: phenotype.fidelity || "Wrapped",
+            });
+        }
+        catch {
+            // skip malformed
+        }
+    }
+    entries.sort((a, b) => b.fitness - a.fitness);
+    return entries;
+}
 //# sourceMappingURL=agent-create.js.map

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package/dist/commands/agent-run.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare const agentRunCommand: Command;
+//# sourceMappingURL=agent-run.d.ts.map

package/dist/commands/agent-run.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/agent-run.js

@@ -0,0 +1,159 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.agentRunCommand = void 0;
+const commander_1 = require("commander");
+const node_fs_1 = require("node:fs");
+const node_path_1 = require("node:path");
+const node_url_1 = require("node:url");
+const display = __importStar(require("../utils/display.js"));
+const config_js_1 = require("../utils/config.js");
+exports.agentRunCommand = new commander_1.Command("run")
+    .description("Execute an agent's genome pipeline (Seq composition)")
+    .argument("<name>", "agent name to run")
+    .option("--input <json>", "input JSON for the pipeline", '{"name":"world"}')
+    .option("--verbose", "show intermediate results", false)
+    .action(async (name, options) => {
+    const root = (0, config_js_1.getProjectRoot)();
+    const config = (0, config_js_1.loadConfig)(root);
+    display.header("Agent Execution");
+    const agent = findAgent(root, name);
+    if (!agent) {
+        display.rustStyleError({
+            code: "E0050",
+            message: `Agent '${name}' not found`,
+            suggestion: "Create one: rotifer agent create " + name + " --genes <g1> <g2>",
+        });
+        process.exit(1);
+    }
+    if (agent.genome.length === 0) {
+        display.error("Agent has an empty genome — nothing to execute");
+        display.info("Recreate with genes: rotifer agent create " + name + " --genes <g1> <g2>");
+        process.exit(1);
+    }
+    let input;
+    try {
+        input = JSON.parse(options.input);
+    }
+    catch {
+        display.error("Invalid --input JSON: " + options.input);
+        process.exit(1);
+    }
+    const compositionType = agent.composition || (agent.genome.length >= 2 ? "Seq" : "Single");
+    display.info(`Agent: ${agent.name} (${agent.id.slice(0, 12)}...)`);
+    display.info(`Composition: ${compositionType}`);
+    display.info(`Pipeline: ${agent.genome.join(" → ")}`);
+    console.log();
+    const genesDir = (0, node_path_1.join)(root, config.genes_dir);
+    const startTime = performance.now();
+    let current = input;
+    for (let i = 0; i < agent.genome.length; i++) {
+        const geneName = agent.genome[i];
+        const geneDir = (0, node_path_1.join)(genesDir, geneName);
+        const step = `[${i + 1}/${agent.genome.length}]`;
+        display.info(`${step} Executing gene: ${geneName}`);
+        const srcFile = findSourceFile(geneDir);
+        if (!srcFile) {
+            display.rustStyleError({
+                code: "E0051",
+                message: `Gene '${geneName}' has no source file`,
+                file: geneDir,
+                suggestion: "Ensure genes/" + geneName + "/index.ts exists",
+            });
+            process.exit(1);
+        }
+        try {
+            const absPath = (0, node_path_1.resolve)(geneDir, srcFile);
+            const mod = await import((0, node_url_1.pathToFileURL)(absPath).href);
+            if (typeof mod.express !== "function") {
+                display.error(`${step} Gene '${geneName}' does not export express()`);
+                process.exit(1);
+            }
+            const stepStart = performance.now();
+            const result = await mod.express(current);
+            const stepElapsed = performance.now() - stepStart;
+            display.success(`${step} ${geneName} completed (${stepElapsed.toFixed(1)}ms)`);
+            if (options.verbose) {
+                display.info(`  Input:  ${JSON.stringify(current).slice(0, 150)}`);
+                display.info(`  Output: ${JSON.stringify(result).slice(0, 150)}`);
+            }
+            current = result;
+        }
+        catch (err) {
+            display.rustStyleError({
+                code: "E0052",
+                message: `Gene '${geneName}' execution failed: ${err.message}`,
+                suggestion: "Run 'rotifer test " + geneName + " --verbose' to debug",
+            });
+            process.exit(1);
+        }
+    }
+    const totalElapsed = performance.now() - startTime;
+    console.log();
+    display.success("Pipeline execution complete");
+    display.keyValue("Agent", agent.name);
+    display.keyValue("Genes Executed", String(agent.genome.length));
+    display.keyValue("Composition", compositionType);
+    display.keyValue("Duration", `${totalElapsed.toFixed(1)}ms`);
+    console.log();
+    display.info("Final output:");
+    console.log(JSON.stringify(current, null, 2));
+});
+function findAgent(root, name) {
+    const agentsDir = (0, node_path_1.join)(root, ".rotifer", "agents");
+    if (!(0, node_fs_1.existsSync)(agentsDir))
+        return null;
+    const files = (0, node_fs_1.readdirSync)(agentsDir).filter((f) => f.endsWith(".json"));
+    for (const file of files) {
+        try {
+            const agent = JSON.parse((0, node_fs_1.readFileSync)((0, node_path_1.join)(agentsDir, file), "utf-8"));
+            if (agent.name === name)
+                return agent;
+        }
+        catch {
+            // skip malformed
+        }
+    }
+    return null;
+}
+function findSourceFile(geneDir) {
+    const candidates = ["index.ts", "index.js", "index.mjs"];
+    for (const c of candidates) {
+        if ((0, node_fs_1.existsSync)((0, node_path_1.join)(geneDir, c)))
+            return c;
+    }
+    return null;
+}
+//# sourceMappingURL=agent-run.js.map

package/dist/commands/agent-run.js.map

@@ -0,0 +1 @@
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package/dist/commands/arena-submit.d.ts.map

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