@rotifer/mcp-server 0.1.0

package/dist/cloud.d.ts

@@ -0,0 +1,60 @@
+interface CloudConfig {
+    endpoint: string;
+    anonKey: string;
+}
+export declare function loadCloudConfig(): CloudConfig;
+export interface Gene {
+    id: string;
+    name: string;
+    owner: string;
+    domain: string;
+    version: string;
+    fidelity: string;
+    description: string;
+    wasm_size: number;
+    downloads: number;
+    reputation_score: number | null;
+    created_at: string;
+    updated_at: string;
+    phenotype?: Record<string, unknown>;
+}
+export interface GeneListResult {
+    genes: Gene[];
+    total: number;
+    page: number;
+    per_page: number;
+}
+export declare function listGenes(options: {
+    domain?: string;
+    query?: string;
+    fidelity?: string;
+    page?: number;
+    perPage?: number;
+}): Promise<GeneListResult>;
+export declare function getGene(id: string): Promise<Gene & {
+    phenotype: Record<string, unknown>;
+}>;
+export interface ArenaEntry {
+    rank: number;
+    gene_id: string;
+    gene_name: string;
+    owner: string;
+    domain: string;
+    fidelity: string;
+    fitness: number;
+    safety: number;
+    reputation_score: number | null;
+    total_calls: number;
+    last_evaluated: string;
+}
+export interface ArenaRankingsResult {
+    rankings: ArenaEntry[];
+    total: number;
+    domain: string | null;
+}
+export declare function getArenaRankings(options: {
+    domain?: string;
+    page?: number;
+    perPage?: number;
+}): Promise<ArenaRankingsResult>;
+export {};

package/dist/cloud.js

@@ -0,0 +1,154 @@
+import { readFileSync, existsSync } from "node:fs";
+import { join } from "node:path";
+const ROTIFER_HOME = join(process.env.HOME || process.env.USERPROFILE || "/tmp", ".rotifer");
+const DEFAULT_ANON_KEY = "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6InZpaGJtcHVxbGFtaHhibWFoY2plIiwicm9sZSI6ImFub24iLCJpYXQiOjE3NzE4MjUxMTQsImV4cCI6MjA4NzQwMTExNH0.t77n7TZ2jV04lya2sWuv4AYAcXnsc49jcfVIJr0heYQ";
+let _cachedConfig = null;
+export function loadCloudConfig() {
+    if (_cachedConfig)
+        return _cachedConfig;
+    const configPath = join(ROTIFER_HOME, "cloud.json");
+    if (existsSync(configPath)) {
+        try {
+            const file = JSON.parse(readFileSync(configPath, "utf-8"));
+            _cachedConfig = {
+                endpoint: file.endpoint || process.env.ROTIFER_CLOUD_ENDPOINT || "https://cloud.rotifer.dev",
+                anonKey: file.anonKey || process.env.ROTIFER_CLOUD_ANON_KEY || DEFAULT_ANON_KEY,
+            };
+            return _cachedConfig;
+        }
+        catch {
+            // fall through
+        }
+    }
+    _cachedConfig = {
+        endpoint: process.env.ROTIFER_CLOUD_ENDPOINT || "https://cloud.rotifer.dev",
+        anonKey: process.env.ROTIFER_CLOUD_ANON_KEY || DEFAULT_ANON_KEY,
+    };
+    return _cachedConfig;
+}
+function apiUrl(path) {
+    const config = loadCloudConfig();
+    return `${config.endpoint.replace(/\/+$/, "")}/rest/v1${path}`;
+}
+function headers() {
+    const config = loadCloudConfig();
+    return {
+        "Content-Type": "application/json",
+        apikey: config.anonKey,
+    };
+}
+async function handleResponse(res) {
+    if (!res.ok) {
+        const body = await res.text();
+        let msg;
+        try {
+            const parsed = JSON.parse(body);
+            msg = parsed.message || parsed.error?.message || body;
+        }
+        catch {
+            msg = body;
+        }
+        if (res.status === 0 || msg.includes("ENOTFOUND") || msg.includes("ECONNREFUSED")) {
+            throw new Error(`Cannot reach Rotifer Cloud API (${loadCloudConfig().endpoint}). ` +
+                "The service may be temporarily unavailable. Check https://rotifer.dev for status.");
+        }
+        throw new Error(`Cloud API error (${res.status}): ${msg}`);
+    }
+    return res.json();
+}
+export async function listGenes(options) {
+    const params = new URLSearchParams();
+    params.set("published", "eq.true");
+    params.set("select", "id,name,domain,version,fidelity,description,wasm_size,downloads,reputation_score,created_at,updated_at,profiles(username)");
+    params.set("order", "created_at.desc");
+    if (options.domain)
+        params.set("domain", `eq.${options.domain}`);
+    if (options.fidelity)
+        params.set("fidelity", `eq.${options.fidelity}`);
+    if (options.query) {
+        const q = options.query.replace(/[%_\\().,*]/g, "");
+        if (q.length > 0) {
+            params.set("or", `(name.ilike.*${q}*,description.ilike.*${q}*)`);
+        }
+    }
+    const limit = Math.min(options.perPage || 20, 50);
+    const offset = ((options.page || 1) - 1) * limit;
+    params.set("limit", String(limit));
+    params.set("offset", String(offset));
+    const res = await fetch(apiUrl(`/genes?${params}`), {
+        headers: { ...headers(), Prefer: "count=exact" },
+    });
+    const total = parseInt(res.headers.get("content-range")?.split("/")[1] || "0", 10);
+    const data = await handleResponse(res);
+    const genes = data.map((row) => ({
+        id: row.id,
+        name: row.name,
+        owner: row.profiles?.username || "unknown",
+        domain: row.domain,
+        version: row.version,
+        fidelity: row.fidelity,
+        description: row.description,
+        wasm_size: row.wasm_size || 0,
+        downloads: row.downloads || 0,
+        reputation_score: row.reputation_score ?? null,
+        created_at: row.created_at,
+        updated_at: row.updated_at,
+    }));
+    return { genes, total, page: options.page || 1, per_page: limit };
+}
+export async function getGene(id) {
+    const params = new URLSearchParams();
+    params.set("id", `eq.${id}`);
+    params.set("select", "*, profiles(username)");
+    const res = await fetch(apiUrl(`/genes?${params}`), { headers: headers() });
+    const data = await handleResponse(res);
+    if (data.length === 0)
+        throw new Error(`Gene '${id}' not found`);
+    const row = data[0];
+    return {
+        id: row.id,
+        name: row.name,
+        owner: row.profiles?.username || "unknown",
+        domain: row.domain,
+        version: row.version,
+        fidelity: row.fidelity,
+        description: row.description,
+        phenotype: row.phenotype || {},
+        wasm_size: row.wasm_size || 0,
+        downloads: row.downloads || 0,
+        reputation_score: row.reputation_score ?? null,
+        created_at: row.created_at,
+        updated_at: row.updated_at,
+    };
+}
+export async function getArenaRankings(options) {
+    const params = new URLSearchParams();
+    params.set("select", "fitness_value,safety_score,total_calls,last_evaluated,domain,genes(id,name,fidelity,reputation_score,profiles(username))");
+    params.set("order", "fitness_value.desc");
+    if (options.domain)
+        params.set("domain", `eq.${options.domain}`);
+    const limit = Math.min(options.perPage || 20, 50);
+    const offset = ((options.page || 1) - 1) * limit;
+    params.set("limit", String(limit));
+    params.set("offset", String(offset));
+    const res = await fetch(apiUrl(`/arena_entries?${params}`), {
+        headers: { ...headers(), Prefer: "count=exact" },
+    });
+    const total = parseInt(res.headers.get("content-range")?.split("/")[1] || "0", 10);
+    const data = await handleResponse(res);
+    const rankings = data.map((row, i) => ({
+        rank: offset + i + 1,
+        gene_id: row.genes?.id || "",
+        gene_name: row.genes?.name || "unknown",
+        owner: row.genes?.profiles?.username || "unknown",
+        domain: row.domain,
+        fidelity: row.genes?.fidelity || "Wrapped",
+        fitness: row.fitness_value,
+        safety: row.safety_score,
+        reputation_score: row.genes?.reputation_score ?? null,
+        total_calls: row.total_calls || 0,
+        last_evaluated: row.last_evaluated,
+    }));
+    return { rankings, total, domain: options.domain || null };
+}
+//# sourceMappingURL=cloud.js.map

package/dist/cloud.js.map

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package/dist/index.d.ts

@@ -0,0 +1,2 @@
+#!/usr/bin/env node
+export {};

package/dist/index.js

@@ -0,0 +1,93 @@
+#!/usr/bin/env node
+import { Server } from "@modelcontextprotocol/sdk/server/index.js";
+import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import { CallToolRequestSchema, ListToolsRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
+import { searchGenes, getGeneDetail, arenaRankings, compareGenes } from "./tools.js";
+const server = new Server({ name: "rotifer", version: "0.1.0" }, { capabilities: { tools: {} } });
+server.setRequestHandler(ListToolsRequestSchema, async () => ({
+    tools: [
+        {
+            name: "search_genes",
+            description: "Search the Rotifer Gene ecosystem. Returns a list of Genes matching the query, filterable by domain and fidelity.",
+            inputSchema: {
+                type: "object",
+                properties: {
+                    query: { type: "string", description: "Free-text search by gene name or description" },
+                    domain: { type: "string", description: "Filter by capability domain (e.g. search.web, code.format)" },
+                    fidelity: { type: "string", enum: ["Wrapped", "Hybrid", "Native", "Unknown"], description: "Filter by gene fidelity type" },
+                    page: { type: "number", description: "Page number (default 1)" },
+                    perPage: { type: "number", description: "Results per page (default 20, max 50)" },
+                },
+            },
+        },
+        {
+            name: "get_gene_detail",
+            description: "Get detailed information about a specific Gene by its ID, including phenotype, fitness, and metadata.",
+            inputSchema: {
+                type: "object",
+                properties: {
+                    id: { type: "string", description: "Gene UUID" },
+                },
+                required: ["id"],
+            },
+        },
+        {
+            name: "get_arena_rankings",
+            description: "Get Arena rankings for a domain. Genes are sorted by F(g) fitness score. Use this to find the best Gene for a capability.",
+            inputSchema: {
+                type: "object",
+                properties: {
+                    domain: { type: "string", description: "Capability domain (e.g. search.web)" },
+                    page: { type: "number", description: "Page number (default 1)" },
+                    perPage: { type: "number", description: "Results per page (default 20)" },
+                },
+            },
+        },
+        {
+            name: "compare_genes",
+            description: "Compare two or more Genes by their F(g) fitness metrics. Returns side-by-side fitness breakdown.",
+            inputSchema: {
+                type: "object",
+                properties: {
+                    gene_ids: {
+                        type: "array",
+                        items: { type: "string" },
+                        description: "Array of Gene UUIDs to compare (2-5)",
+                        minItems: 2,
+                        maxItems: 5,
+                    },
+                },
+                required: ["gene_ids"],
+            },
+        },
+    ],
+}));
+server.setRequestHandler(CallToolRequestSchema, async (request) => {
+    const { name, arguments: args } = request.params;
+    try {
+        switch (name) {
+            case "search_genes":
+                return { content: [{ type: "text", text: JSON.stringify(await searchGenes(args), null, 2) }] };
+            case "get_gene_detail":
+                return { content: [{ type: "text", text: JSON.stringify(await getGeneDetail(args), null, 2) }] };
+            case "get_arena_rankings":
+                return { content: [{ type: "text", text: JSON.stringify(await arenaRankings(args), null, 2) }] };
+            case "compare_genes":
+                return { content: [{ type: "text", text: JSON.stringify(await compareGenes(args), null, 2) }] };
+            default:
+                return { content: [{ type: "text", text: `Unknown tool: ${name}` }], isError: true };
+        }
+    }
+    catch (error) {
+        return { content: [{ type: "text", text: `Error: ${error.message}` }], isError: true };
+    }
+});
+async function main() {
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+}
+main().catch((err) => {
+    console.error("Fatal:", err);
+    process.exit(1);
+});
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/tools.d.ts

@@ -0,0 +1,33 @@
+import { type Gene, type GeneListResult, type ArenaRankingsResult } from "./cloud.js";
+export declare function searchGenes(args: {
+    query?: string;
+    domain?: string;
+    fidelity?: string;
+    page?: number;
+    perPage?: number;
+}): Promise<GeneListResult>;
+export declare function getGeneDetail(args: {
+    id: string;
+}): Promise<Gene & {
+    phenotype: Record<string, unknown>;
+}>;
+export declare function arenaRankings(args: {
+    domain?: string;
+    page?: number;
+    perPage?: number;
+}): Promise<ArenaRankingsResult>;
+export declare function compareGenes(args: {
+    gene_ids: string[];
+}): Promise<{
+    comparison: Array<{
+        gene_id: string;
+        gene_name: string;
+        domain: string;
+        fidelity: string;
+        fitness: number | null;
+        safety: number | null;
+        reputation_score: number | null;
+        downloads: number;
+    }>;
+    recommendation: string;
+}>;

package/dist/tools.js

@@ -0,0 +1,50 @@
+import { listGenes, getGene, getArenaRankings, } from "./cloud.js";
+export async function searchGenes(args) {
+    return listGenes({
+        query: args.query,
+        domain: args.domain,
+        fidelity: args.fidelity,
+        page: args.page || 1,
+        perPage: Math.min(args.perPage || 20, 50),
+    });
+}
+export async function getGeneDetail(args) {
+    if (!args.id)
+        throw new Error("Gene id is required");
+    return getGene(args.id);
+}
+export async function arenaRankings(args) {
+    return getArenaRankings({
+        domain: args.domain,
+        page: args.page || 1,
+        perPage: Math.min(args.perPage || 20, 50),
+    });
+}
+export async function compareGenes(args) {
+    if (!args.gene_ids || args.gene_ids.length < 2) {
+        throw new Error("At least 2 gene_ids required for comparison");
+    }
+    if (args.gene_ids.length > 5) {
+        throw new Error("Maximum 5 genes can be compared at once");
+    }
+    const genes = await Promise.all(args.gene_ids.map((id) => getGene(id)));
+    const comparison = genes.map((g) => ({
+        gene_id: g.id,
+        gene_name: g.name,
+        domain: g.domain,
+        fidelity: g.fidelity,
+        fitness: g.reputation_score,
+        safety: null,
+        reputation_score: g.reputation_score,
+        downloads: g.downloads,
+    }));
+    const sorted = [...comparison].sort((a, b) => (b.reputation_score || 0) - (a.reputation_score || 0));
+    const best = sorted[0];
+    return {
+        comparison,
+        recommendation: best
+            ? `Based on available metrics, "${best.gene_name}" has the highest score (${best.reputation_score ?? "N/A"}). Use Arena rankings for authoritative F(g)-based comparison within a domain.`
+            : "Insufficient data for recommendation.",
+    };
+}
+//# sourceMappingURL=tools.js.map

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package/package.json

@@ -0,0 +1,43 @@
+{
+  "name": "@rotifer/mcp-server",
+  "version": "0.1.0",
+  "description": "Rotifer Protocol MCP Server — search, run, and compare Genes via Model Context Protocol",
+  "type": "module",
+  "bin": {
+    "rotifer-mcp-server": "./dist/index.js"
+  },
+  "main": "./dist/index.js",
+  "files": [
+    "dist/"
+  ],
+  "scripts": {
+    "build": "tsc",
+    "dev": "tsx src/index.ts",
+    "start": "node dist/index.js",
+    "prepublishOnly": "npm run build"
+  },
+  "keywords": [
+    "rotifer",
+    "mcp",
+    "ai-agent",
+    "gene",
+    "evolution"
+  ],
+  "license": "Apache-2.0",
+  "repository": {
+    "type": "git",
+    "url": "https://gitlab.com/rotifer-protocol/rotifer-mcp-server"
+  },
+  "homepage": "https://rotifer.dev/docs/guides/mcp-setup",
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.0.0"
+  },
+  "devDependencies": {
+    "@types/node": "^25.5.0",
+    "tsx": "^4.0.0",
+    "typescript": "^5.4.0"
+  },
+  "engines": {
+    "node": ">=20"
+  }
+}