@rnacanvas/search 1.5.0 → 3.0.0

package/README.md

@@ -12,37 +12,7 @@ All exports of this package can be accessed as named imports.
 
 ```javascript
 // some example imports
-import { Motif, SequenceCharacter } from '@rnacanvas/search';
-```
-
-## `class Motif`
-
-Represents a motif.
-
-```javascript
-var CUGCCA = new Motif('CUGCCA');
-
-CUGCCA.toString(); // "CUGCCA"
-
-// a single character motif
-var A = new Motif('A');
-
-A.toString(); // "A"
-
-// empty motifs are accepted
-var emptyMotif = new Motif('');
-
-emptyMotif.toString(); // ""
-```
-
-### `toString()`
-
-Returns the motif as a string.
-
-```javascript
-var CUGCCA = new Motif('CUGCCA');
-
-CUGCCA.toString(); // "CUGCCA"
+import { removeGapCharacters, SequenceCharacter } from '@rnacanvas/search';
 ```
 
 ## `function removeGapCharacters()`
@@ -229,3 +199,41 @@ A.complements(''); // throws
 A.complements('AG'); // throws
 A.complements('asdf'); // throws
 ```
+
+## `function isWobblePair()`
+
+Returns `true` if the two input characters form a `G:U` or `G:T` pair.
+
+```javascript
+isWobblePair('G', 'U'); // true
+isWobblePair('G', 'T'); // true
+
+isWobblePair('A', 'U'); // false
+isWobblePair('G', 'C'); // false
+
+// order doesn't matter
+isWobblePair('U', 'G'); // true
+
+// case doesn't matter
+isWobblePair('g', 'u'); // true
+
+var G = new SequenceCharacter('G');
+var U = new SequenceCharacter('U');
+
+// handles sequence character instances
+isWobblePair(G, U); // true
+
+var A = new SequenceCharacter('A');
+
+isWobblePair(A, U); // false
+```
+
+Returns `false` for empty strings
+and strings containing more than one character.
+
+```javascript
+isWobblePair('G', ''); // false
+
+// each string must be a single character
+isWobblePair('G', 'UT'); // false
+```

package/dist/SequenceCharacter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"SequenceCharacter.d.ts","sourceRoot":"","sources":["../src/SequenceCharacter.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,qBAAa,iBAAiB;;gBAGhB,SAAS,EAAE,MAAM;IAU7B,QAAQ,IAAI,MAAM;IAIlB,OAAO,CAAC,cAAc,EAAE,iBAAiB,GAAG,MAAM,GAAG,OAAO;IAkC5D,WAAW,CAAC,cAAc,EAAE,iBAAiB,GAAG,MAAM,GAAG,OAAO;CAiCjE"}
+{"version":3,"file":"SequenceCharacter.d.ts","sourceRoot":"","sources":["../src/SequenceCharacter.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,qBAAa,iBAAiB;;gBAGhB,SAAS,EAAE,MAAM;IAU7B,QAAQ,IAAI,MAAM;IAIlB,OAAO,CAAC,cAAc,EAAE,iBAAiB,GAAG,MAAM,GAAG,OAAO;IAgC5D,WAAW,CAAC,cAAc,EAAE,iBAAiB,GAAG,MAAM,GAAG,OAAO;CA+BjE"}

package/dist/index.d.ts

@@ -1,5 +1,3 @@
-import { Motif } from './Motif';
-export { Motif };
 import { removeGapCharacters } from './removeGapCharacters';
 export { removeGapCharacters };
 import { SequenceCharacter } from './SequenceCharacter';

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,KAAK,EAAE,CAAC;AAEjB,OAAO,EAAE,mBAAmB,EAAE,MAAM,uBAAuB,CAAC;AAC5D,OAAO,EAAE,mBAAmB,EAAE,CAAC;AAE/B,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AACxD,OAAO,EAAE,iBAAiB,EAAE,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,uBAAuB,CAAC;AAC5D,OAAO,EAAE,mBAAmB,EAAE,CAAC;AAE/B,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AACxD,OAAO,EAAE,iBAAiB,EAAE,CAAC"}

package/dist/index.js

@@ -1 +1 @@
-!function(e,t){"object"==typeof exports&&"object"==typeof module?module.exports=t():"function"==typeof define&&define.amd?define([],t):"object"==typeof exports?exports.search=t():e.search=t()}(this,()=>(()=>{"use strict";var e={d:(t,r)=>{for(var o in r)e.o(r,o)&&!e.o(t,o)&&Object.defineProperty(t,o,{enumerable:!0,get:r[o]})},o:(e,t)=>Object.prototype.hasOwnProperty.call(e,t),r:e=>{"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(e,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(e,"__esModule",{value:!0})}},t={};e.r(t),e.d(t,{Motif:()=>o,SequenceCharacter:()=>c,removeGapCharacters:()=>n});var r;class o{constructor(e){r.set(this,void 0),function(e,t,r,o,n){if("m"===o)throw new TypeError("Private method is not writable");if("a"===o&&!n)throw new TypeError("Private accessor was defined without a setter");if("function"==typeof t?e!==t||!n:!t.has(e))throw new TypeError("Cannot write private member to an object whose class did not declare it");"a"===o?n.call(e,r):n?n.value=r:t.set(e,r)}(this,r,e,"f")}toString(){return function(e,t,r,o){if("a"===r&&!o)throw new TypeError("Private accessor was defined without a getter");if("function"==typeof t?e!==t||!o:!t.has(e))throw new TypeError("Cannot read private member from an object whose class did not declare it");return"m"===r?o:"a"===r?o.call(e):o?o.value:t.get(e)}(this,r,"f")}}function n(e){return e.replace(/[\.-]/g,"")}r=new WeakMap;var a,i=function(e,t,r,o){if("a"===r&&!o)throw new TypeError("Private accessor was defined without a getter");if("function"==typeof t?e!==t||!o:!t.has(e))throw new TypeError("Cannot read private member from an object whose class did not declare it");return"m"===r?o:"a"===r?o.call(e):o?o.value:t.get(e)};class c{constructor(e){if(a.set(this,void 0),0==e.length)throw new Error("Character cannot be an empty string.");if(e.length>1)throw new Error("Character must be a single character.");!function(e,t,r,o,n){if("m"===o)throw new TypeError("Private method is not writable");if("a"===o&&!n)throw new TypeError("Private accessor was defined without a setter");if("function"==typeof t?e!==t||!n:!t.has(e))throw new TypeError("Cannot write private member to an object whose class did not declare it");"a"===o?n.call(e,r):n?n.value=r:t.set(e,r)}(this,a,e,"f")}toString(){return i(this,a,"f")}matches(e){var t,r;if("string"!=typeof e&&(e=e.toString()),0==e.length)throw new Error("Other character cannot be an empty string.");if(e.length>1)throw new Error("Other character cannot be multiple characters.");let o=i(this,a,"f").toUpperCase();return e=e.toUpperCase(),!(!s.includes(o)||!s.includes(e))||!s.includes(o)&&!s.includes(e)&&("N"===o&&!s.includes(e)||"N"===e&&!s.includes(o)||(o in l?null!==(r=null===(t=l[o])||void 0===t?void 0:t.includes(e))&&void 0!==r&&r:o===e))}complements(e){var t,r;if("string"!=typeof e&&(e=e.toString()),0==e.length)throw new Error("Other character cannot be an empty string.");if(e.length>1)throw new Error("Other character cannot be multiple characters.");let o=i(this,a,"f").toUpperCase();return e=e.toUpperCase(),!(!s.includes(o)||!s.includes(e))||!s.includes(o)&&!s.includes(e)&&("N"===o&&!s.includes(e)||"N"===e&&!s.includes(o)||o in h&&null!==(r=null===(t=h[o])||void 0===t?void 0:t.includes(e))&&void 0!==r&&r)}}a=new WeakMap;const s=[...".-"],l={A:[..."A"],C:[..."C"],G:[..."G"],U:[..."UT"],T:[..."TU"],R:[..."AG"],Y:[..."CUT"],S:[..."GC"],W:[..."AUT"],K:[..."GUT"],M:[..."AC"],B:[..."CGUTYSK"],D:[..."AGUTRWK"],H:[..."ACUTYWM"],V:[..."ACGRSM"]},h={A:[..."UT"],C:[..."G"],G:[..."CUTY"],U:[..."AGR"],T:[..."AGR"],R:[..."UT"],Y:[..."G"]};return t})());
+!function(e,t){"object"==typeof exports&&"object"==typeof module?module.exports=t():"function"==typeof define&&define.amd?define([],t):"object"==typeof exports?exports.search=t():e.search=t()}(this,()=>(()=>{"use strict";var e={d:(t,r)=>{for(var n in r)e.o(r,n)&&!e.o(t,n)&&Object.defineProperty(t,n,{enumerable:!0,get:r[n]})},o:(e,t)=>Object.prototype.hasOwnProperty.call(e,t),r:e=>{"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(e,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(e,"__esModule",{value:!0})}},t={};function r(e){return e.replace(/[\.-]/g,"")}e.r(t),e.d(t,{SequenceCharacter:()=>i,removeGapCharacters:()=>r});var n,o=function(e,t,r,n){if("a"===r&&!n)throw new TypeError("Private accessor was defined without a getter");if("function"==typeof t?e!==t||!n:!t.has(e))throw new TypeError("Cannot read private member from an object whose class did not declare it");return"m"===r?n:"a"===r?n.call(e):n?n.value:t.get(e)};class i{constructor(e){if(n.set(this,void 0),0==e.length)throw new Error("Character cannot be an empty string.");if(e.length>1)throw new Error("Character must be a single character.");!function(e,t,r,n,o){if("m"===n)throw new TypeError("Private method is not writable");if("a"===n&&!o)throw new TypeError("Private accessor was defined without a setter");if("function"==typeof t?e!==t||!o:!t.has(e))throw new TypeError("Cannot write private member to an object whose class did not declare it");"a"===n?o.call(e,r):o?o.value=r:t.set(e,r)}(this,n,e,"f")}toString(){return o(this,n,"f")}matches(e){var t,r;if("string"!=typeof e&&(e=e.toString()),1!=e.length)return!1;let i=o(this,n,"f").toUpperCase();return e=e.toUpperCase(),!(!a.includes(i)||!a.includes(e))||!a.includes(i)&&!a.includes(e)&&("N"===i&&!a.includes(e)||"N"===e&&!a.includes(i)||(i in s?null!==(r=null===(t=s[i])||void 0===t?void 0:t.includes(e))&&void 0!==r&&r:i===e))}complements(e){var t,r;if("string"!=typeof e&&(e=e.toString()),1!=e.length)return!1;let i=o(this,n,"f").toUpperCase();return e=e.toUpperCase(),!(!a.includes(i)||!a.includes(e))||!a.includes(i)&&!a.includes(e)&&("N"===i&&!a.includes(e)||"N"===e&&!a.includes(i)||i in c&&null!==(r=null===(t=c[i])||void 0===t?void 0:t.includes(e))&&void 0!==r&&r)}}n=new WeakMap;const a=[...".-"],s={A:[..."A"],C:[..."C"],G:[..."G"],U:[..."UT"],T:[..."TU"],R:[..."AG"],Y:[..."CUT"],S:[..."GC"],W:[..."AUT"],K:[..."GUT"],M:[..."AC"],B:[..."CGUTYSK"],D:[..."AGUTRWK"],H:[..."ACUTYWM"],V:[..."ACGRSM"]},c={A:[..."UT"],C:[..."G"],G:[..."CUTY"],U:[..."AGR"],T:[..."AGR"],R:[..."UT"],Y:[..."G"]};return t})());

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@rnacanvas/search",
-  "version": "1.5.0",
+  "version": "3.0.0",
   "description": "Find motifs and complements",
   "repository": {
     "type": "git",

package/dist/Motif.d.ts

@@ -1,6 +0,0 @@
-export declare class Motif {
-    #private;
-    constructor(motif: string);
-    toString(): string;
-}
-//# sourceMappingURL=Motif.d.ts.map

package/dist/Motif.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"Motif.d.ts","sourceRoot":"","sources":["../src/Motif.ts"],"names":[],"mappings":"AAAA,qBAAa,KAAK;;gBAGJ,KAAK,EAAE,MAAM;IAIzB,QAAQ,IAAI,MAAM;CAGnB"}