@rnacanvas/draw 7.1.1 → 8.0.0

package/dist/index.js

@@ -1 +1 @@
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t}toArray(){const{_a:t,_b:e,_c:r,_d:n,space:i}=this;return[t,e,r,n,i]}toHex(){const[t,e,r]=this._clamped().map(Z);return`#${t}${e}${r}`}toRgb(){const[t,e,r]=this._clamped();return`rgb(${t},${e},${r})`}toString(){return this.toHex()}xyz(){const{_a:t,_b:e,_c:r}=this.rgb(),[n,i,s]=[t,e,r].map((t=>t/255)),o=n>.04045?Math.pow((n+.055)/1.055,2.4):n/12.92,a=i>.04045?Math.pow((i+.055)/1.055,2.4):i/12.92,h=s>.04045?Math.pow((s+.055)/1.055,2.4):s/12.92,u=(.4124*o+.3576*a+.1805*h)/.95047,c=(.2126*o+.7152*a+.0722*h)/1,l=(.0193*o+.1192*a+.9505*h)/1.08883,f=u>.008856?Math.pow(u,1/3):7.787*u+16/116,d=c>.008856?Math.pow(c,1/3):7.787*c+16/116,p=l>.008856?Math.pow(l,1/3):7.787*l+16/116;return new et(f,d,p,"xyz")}_clamped(){const{_a:t,_b:e,_c:r}=this.rgb(),{max:n,min:i,round:s}=Math;return[t,e,r].map((t=>n(0,i(s(t),255))))}}class rt{constructor(...t){this.init(...t)}clone(){return new rt(this)}init(t,e){const r=Array.isArray(t)?{x:t[0],y:t[1]}:"object"==typeof t?{x:t.x,y:t.y}:{x:t,y:e};return 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r=e.index(t);return e.add(this,r),t.remove(),this},linkTo(t){let e=this.linker();return e||(e=new Sr,this.wrap(e)),"function"==typeof t?t.call(e,e):e.to(t),this},linker(){const t=this.parent();return t&&"a"===t.node.nodeName.toLowerCase()?t:null}}}),D(Sr,"A");class Mr extends At{constructor(t,e=t){super(E("mask",t),e)}remove(){return this.targets().forEach((function(t){t.unmask()})),super.remove()}targets(){return ft("svg [mask*="+this.id()+"]")}}c({Container:{mask:V((function(){return this.defs().put(new Mr)}))},Element:{masker(){return this.reference("mask")},maskWith(t){const e=t instanceof Mr?t:this.parent().mask().add(t);return this.attr("mask","url(#"+e.id()+")")},unmask(){return this.attr("mask",null)}}}),D(Mr,"Mask");class Or extends Pt{constructor(t,e=t){super(E("stop",t),e)}update(t){return("number"==typeof t||t instanceof 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e&&(r=e.plot(t)),null==t?r:this}track(){return this.reference("href")}}c({Container:{textPath:V((function(t,e){return t instanceof hr||(t=this.text(t)),t.path(e)}))},Text:{path:V((function(t,e=!0){const r=new Pr;let n;if(t instanceof Pe||(t=this.defs().path(t)),r.attr("href","#"+t,S),e)for(;n=this.node.firstChild;)r.node.appendChild(n);return this.put(r)})),textPath(){return this.findOne("textPath")}},Path:{text:V((function(t){return t instanceof hr||(t=(new hr).addTo(this.parent()).text(t)),t.path(this)})),targets(){return ft("svg textPath").filter((t=>(t.attr("href")||"").includes(this.id())))}}}),Pr.prototype.MorphArray=be,D(Pr,"TextPath");class Cr extends Tt{constructor(t,e=t){super(E("use",t),e)}use(t,e){return this.attr("href",(e||"")+"#"+t,S)}}c({Container:{use:V((function(t,e){return this.put(new 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Tr(t,e)}get bases(){return this.elementsDrawing.elements}append(t){t.appendTo(this.svgDoc),this.bases.push(t)}add(t){let e=Er.Nucleobase.create(t);return this.append(e),e}}var Dr=r(282);class kr{constructor(t,e){this.svgDoc=t,this.elementsDrawing=new Tr(t,e),new MutationObserver((()=>{this.bonds.forEach((t=>{t.base1.isIn(this.svgDoc)&&t.base2.isIn(this.svgDoc)||t.remove()}))})).observe(t,{childList:!0,subtree:!0})}get bonds(){return this.elementsDrawing.elements}set bonds(t){this.elementsDrawing.elements=t}}class Br{constructor(t,e){this.svgDoc=t,this.primaryBondDefaultValues={attributes:{stroke:"#808080","stroke-width":"1"},basePadding1:6,basePadding2:6},this.bondsDrawing=new kr(t,e)}get primaryBonds(){return this.bondsDrawing.bonds}set primaryBonds(t){this.bondsDrawing.bonds=t}append(t){t.appendTo(this.svgDoc),this.primaryBonds.push(t)}add(t,e){let r=Dr.StraightBond.between(t,e);return r.set(this.primaryBondDefaultValues),this.append(r),r}}class Ir{constructor(t,e){this.svgDoc=t,this.secondaryBondDefaultValues={attributes:{stroke:"#000000","stroke-width":"2"},basePadding1:6,basePadding2:6},this.bondsDrawing=new kr(t,e)}get secondaryBonds(){return this.bondsDrawing.bonds}set secondaryBonds(t){this.bondsDrawing.bonds=t}append(t){t.appendTo(this.svgDoc),this.secondaryBonds.push(t)}add(t,e){let r=Dr.StraightBond.between(t,e);return r.set(this.secondaryBondDefaultValues),this.append(r),r}}class Lr{constructor(){this.domNode=(new $e).node,this.domNode.setAttribute("viewBox","0 0 250 250"),this.domNode.setAttribute("width","250"),this.domNode.setAttribute("height","250"),this.basesDrawing=new jr(this.domNode,[]),this.primaryBondsDrawing=new Br(this.domNode,[]),this.secondaryBondsDrawing=new Ir(this.domNode,[])}get outerXML(){return this.domNode.outerHTML}get innerXML(){return this.domNode.innerHTML}appendTo(t){t.appendChild(this.domNode)}remove(){this.domNode.remove()}get minX(){return this.domNode.viewBox.baseVal.x}set minX(t){let e=this.maxX-t,r=this.horizontalScaling;this.domNode.setAttribute("viewBox",`${t} ${this.minY} ${e} ${this.height}`),this.domNode.setAttribute("width",(r*e).toString())}get maxX(){return this.minX+this.width}set maxX(t){let e=t-this.minX,r=this.horizontalScaling;this.domNode.setAttribute("viewBox",`${this.minX} ${this.minY} ${e} ${this.height}`),this.domNode.setAttribute("width",(r*e).toString())}get minY(){return this.domNode.viewBox.baseVal.y}set minY(t){let e=this.maxY-t,r=this.verticalScaling;this.domNode.setAttribute("viewBox",`${this.minX} ${t} ${this.width} ${e}`),this.domNode.setAttribute("height",(r*e).toString())}get maxY(){return this.minY+this.height}set maxY(t){let e=t-this.minY,r=this.verticalScaling;this.domNode.setAttribute("viewBox",`${this.minX} ${this.minY} ${this.width} ${e}`),this.domNode.setAttribute("height",(r*e).toString())}setBoundaries({minX:t,maxX:e,minY:r,maxY:n}){this.minX=t,this.maxX=e,this.minY=r,this.maxY=n}get width(){return this.domNode.viewBox.baseVal.width}set width(t){this.maxX=this.minX+t}get height(){return this.domNode.viewBox.baseVal.height}set height(t){this.maxY=this.minY+t}get horizontalScaling(){let t=this.width;return this.domNode.width.baseVal.value/t}set horizontalScaling(t){let e=this.width;this.domNode.setAttribute("width",(t*e).toString())}get verticalScaling(){let t=this.height;return this.domNode.height.baseVal.value/t}set verticalScaling(t){let e=this.height;this.domNode.setAttribute("height",(t*e).toString())}setScaling(t){this.horizontalScaling=t,this.verticalScaling=t}get horizontalClientScaling(){return new Ar.HorizontalClientScaling(this.domNode).get()}get verticalClientScaling(){return new Ar.VerticalClientScaling(this.domNode).get()}get bases(){return this.basesDrawing.bases}appendBase(t){this.basesDrawing.append(t)}addBase(t){return this.basesDrawing.add(t)}get primaryBondDefaultValues(){return this.primaryBondsDrawing.primaryBondDefaultValues}set primaryBondDefaultValues(t){this.primaryBondsDrawing.primaryBondDefaultValues=t}get primaryBonds(){return this.primaryBondsDrawing.primaryBonds}set primaryBonds(t){this.primaryBondsDrawing.primaryBonds=[...t]}appendPrimaryBond(t){this.primaryBondsDrawing.append(t)}addPrimaryBond(t,e){return this.primaryBondsDrawing.add(t,e)}get secondaryBondDefaultValues(){return this.secondaryBondsDrawing.secondaryBondDefaultValues}set secondaryBondDefaultValues(t){this.secondaryBondsDrawing.secondaryBondDefaultValues=t}get secondaryBonds(){return this.secondaryBondsDrawing.secondaryBonds}set secondaryBonds(t){this.secondaryBondsDrawing.secondaryBonds=[...t]}appendSecondaryBond(t){this.secondaryBondsDrawing.append(t)}addSecondaryBond(t,e){return this.secondaryBondsDrawing.add(t,e)}get contentBBox(){return this.domNode.getBBox()}setPadding(t){let e=this.contentBBox;this.setBoundaries({minX:e.x-t,maxX:e.x+e.width+t,minY:e.y-t,maxY:e.y+e.height+t})}}var Vr=r(127),zr=r(661),Fr=r(986);class Rr{constructor(t){this.targetDrawing=t}draw(t,e){let r=[...t].map((t=>this.targetDrawing.addBase(t)));(0,Vr.consecutivePairs)(r).forEach((t=>this.targetDrawing.addPrimaryBond(...t)));let n=[...(0,Vr.parseDotBracket)(r,e)];n.forEach((t=>this.targetDrawing.addSecondaryBond(...t))),r.forEach((t=>t.bringToFront()));let i=1.87*(0,Fr.mean)(r.map((t=>t.bbox.height)));(0,zr.radialize)(r,n,{spacing:i,basePairSpacing:i/2,hairpinLoopSpacing:i/2})}}var qr,Xr,Yr,Gr,Hr=function(t,e,r,n){if("a"===r&&!n)throw new TypeError("Private accessor was defined without a getter");if("function"==typeof e?t!==e||!n:!e.has(t))throw new TypeError("Cannot read private member from an object whose class did not declare it");return"m"===r?n:"a"===r?n.call(t):n?n.value:e.get(t)};class Ur{constructor(t){qr.add(this),Xr.set(this,void 0),function(t,e,r,n,i){if("m"===n)throw new TypeError("Private method is not writable");if("a"===n&&!i)throw new TypeError("Private accessor was defined without a setter");if("function"==typeof e?t!==e||!i:!e.has(t))throw new TypeError("Cannot write private member to an object whose class did not declare it");"a"===n?i.call(t,r):i?i.value=r:e.set(t,r)}(this,Xr,t,"f")}draw(t){t.rnaComplexes.forEach((e=>{e.rnaMolecules.forEach((e=>{let r=e.sequence.map((e=>Hr(this,qr,"m",Yr).call(this,e,t))),n=(0,Fr.mean)(r.map((t=>t.bbox.height)));Hr(this,Xr,"f").primaryBondDefaultValues.attributes["stroke-width"]=""+.125*n,Hr(this,Xr,"f").primaryBondDefaultValues.basePadding1=.6*n,Hr(this,Xr,"f").primaryBondDefaultValues.basePadding2=.6*n,(0,Vr.consecutivePairs)(r).forEach((t=>Hr(this,Xr,"f").addPrimaryBond(...t))),Hr(this,Xr,"f").secondaryBondDefaultValues.attributes["stroke-width"]=""+.15*n,Hr(this,Xr,"f").secondaryBondDefaultValues.basePadding1=.5*n,Hr(this,Xr,"f").secondaryBondDefaultValues.basePadding2=.5*n,new Set(e.basePairs.map((t=>JSON.stringify(t)))).forEach((e=>Hr(this,qr,"m",Gr).call(this,JSON.parse(e),r,t)))}))}))}}Xr=new WeakMap,qr=new WeakSet,Yr=function(t,e){let r=Hr(this,Xr,"f").addBase(t.residueName);return t.classes.forEach((t=>{e.classes.filter((e=>e.name==t)).forEach((t=>r.setAttributes(Object.assign(Object.assign({},t),{name:void 0}))))})),r.centerPoint.x=t.x,r.centerPoint.y=t.y,r},Gr=function(t,e,r){let n=e[t.residueIndex1],i=e[t.residueIndex2],s=Hr(this,Xr,"f").addSecondaryBond(n,i);return t.classes.forEach((t=>{r.classes.filter((e=>e.name==t)).forEach((t=>s.setAttributes(Object.assign(Object.assign({},t),{name:void 0}))))})),s}})(),n})()));