npm - @rnacanvas/draw - Versions diffs - 10.1.0 → 11.0.0 - Mend

@rnacanvas/draw 10.1.0 → 11.0.0

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Files changed (2) hide show

package/dist/index.js +1 -1
package/package.json +4 -4

package/dist/index.js CHANGED Viewed

	@@ -1 +1 @@
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this._queueNumber("leading",t)},viewbox(t,e,r,n){return this._queueObject("viewbox",new at(t,e,r,n))},update(t){return"object"!=typeof t?this.update({offset:arguments[0],color:arguments[1],opacity:arguments[2]}):(null!=t.opacity&&this.attr("stop-opacity",t.opacity),null!=t.color&&this.attr("stop-color",t.color),null!=t.offset&&this.attr("offset",t.offset),this)}}),L(Xe,{rx:jt,ry:Dt,from:qt,to:Gt}),D(Xe,"Runner");class $e extends At{constructor(t,e=t){super(E("svg",t),e),this.namespace()}defs(){return this.isRoot()?T(this.node.querySelector("defs"))\|\|this.put(new Et):this.root().defs()}isRoot(){return!this.node.parentNode\|\|!(this.node.parentNode instanceof M.window.SVGElement)&&"#document-fragment"!==this.node.parentNode.nodeName}namespace(){return this.isRoot()?this.attr({xmlns:v,version:"1.1"}).attr("xmlns:xlink",S,_):this.root().namespace()}removeNamespace(){return this.attr({xmlns:null,version:null}).attr("xmlns:xlink",null,_).attr("xmlns:svgjs",null,_)}root(){return 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this._queueNumber("leading",t)},viewbox(t,e,r,n){return this._queueObject("viewbox",new at(t,e,r,n))},update(t){return"object"!=typeof t?this.update({offset:arguments[0],color:arguments[1],opacity:arguments[2]}):(null!=t.opacity&&this.attr("stop-opacity",t.opacity),null!=t.color&&this.attr("stop-color",t.color),null!=t.offset&&this.attr("offset",t.offset),this)}}),L(Xe,{rx:jt,ry:Dt,from:qt,to:Gt}),D(Xe,"Runner");class $e extends At{constructor(t,e=t){super(E("svg",t),e),this.namespace()}defs(){return this.isRoot()?T(this.node.querySelector("defs"))\|\|this.put(new Et):this.root().defs()}isRoot(){return!this.node.parentNode\|\|!(this.node.parentNode instanceof M.window.SVGElement)&&"#document-fragment"!==this.node.parentNode.nodeName}namespace(){return this.isRoot()?this.attr({xmlns:v,version:"1.1"}).attr("xmlns:xlink",S,_):this.root().namespace()}removeNamespace(){return this.attr({xmlns:null,version:null}).attr("xmlns:xlink",null,_).attr("xmlns:svgjs",null,_)}root(){return 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this.attr("points",this.array().size(r.width,r.height))}Ce.prototype.MorphArray=we,l({Container:{path:V((function(t){return this.put(new Ce).plot(t\|\|new we)}))}}),D(Ce,"Path");class De extends Tt{constructor(t,e=t){super(E("polygon",t),e)}}l({Container:{polygon:V((function(t){return this.put(new De).plot(t\|\|new Wt)}))}}),L(De,i),L(De,s),D(De,"Polygon");class ke extends Tt{constructor(t,e=t){super(E("polyline",t),e)}}l({Container:{polyline:V((function(t){return this.put(new ke).plot(t\|\|new Wt)}))}}),L(ke,i),L(ke,s),D(ke,"Polyline");class Be extends Tt{constructor(t,e=t){super(E("rect",t),e)}}L(Be,{rx:jt,ry:Dt}),l({Container:{rect:V((function(t,e){return this.put(new Be).size(t,e)}))}}),D(Be,"Rect");class Ie{constructor(){this._first=null,this._last=null}first(){return this._first&&this._first.value}last(){return this._last&&this._last.value}push(t){const e=void 0!==t.next?t:{value:t,next:null,prev:null};return this._last?(e.prev=this._last,this._last.next=e,this._last=e):(this._last=e,this._first=e),e}remove(t){t.prev&&(t.prev.next=t.next),t.next&&(t.next.prev=t.prev),t===this._last&&(this._last=t.prev),t===this._first&&(this._first=t.next),t.prev=null,t.next=null}shift(){const t=this._first;return t?(this._first=t.next,this._first&&(this._first.prev=null),this._last=this._first?this._last:null,t.value):null}}const Le={nextDraw:null,frames:new Ie,timeouts:new Ie,immediates:new Ie,timer:()=>M.window.performance\|\|M.window.Date,transforms:[],frame(t){const e=Le.frames.push({run:t});return null===Le.nextDraw&&(Le.nextDraw=M.window.requestAnimationFrame(Le._draw)),e},timeout(t,e){e=e\|\|0;const r=Le.timer().now()+e,n=Le.timeouts.push({run:t,time:r});return null===Le.nextDraw&&(Le.nextDraw=M.window.requestAnimationFrame(Le._draw)),n},immediate(t){const e=Le.immediates.push(t);return null===Le.nextDraw&&(Le.nextDraw=M.window.requestAnimationFrame(Le._draw)),e},cancelFrame(t){null!=t&&Le.frames.remove(t)},clearTimeout(t){null!=t&&Le.timeouts.remove(t)},cancelImmediate(t){null!=t&&Le.immediates.remove(t)},_draw(t){let e=null;const r=Le.timeouts.last();for(;(e=Le.timeouts.shift())&&(t>=e.time?e.run():Le.timeouts.push(e),e!==r););let n=null;const i=Le.frames.last();for(;n!==i&&(n=Le.frames.shift());)n.run(t);let s=null;for(;s=Le.immediates.shift();)s();Le.nextDraw=Le.timeouts.first()\|\|Le.frames.first()?M.window.requestAnimationFrame(Le._draw):null}},Ve=Le,Fe=function(t){const e=t.start,r=t.runner.duration();return{start:e,duration:r,end:e+r,runner:t.runner}},Re=function(){const t=M.window;return(t.performance\|\|t.Date).now()};class ze extends wt{constructor(t=Re){super(),this._timeSource=t,this.terminate()}active(){return!!this._nextFrame}finish(){return this.time(this.getEndTimeOfTimeline()+1),this.pause()}getEndTime(){const 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Ve.cancelFrame(this._nextFrame),this._nextFrame=null,t?this._stepImmediate():(this._paused\|\|(this._nextFrame=Ve.frame(this._step)),this)}_stepFn(t=!1){const e=this._timeSource();let r=e-this._lastSourceTime;t&&(r=0);const n=this._speedr+(this._time-this._lastStepTime);this._lastSourceTime=e,t\|\|(this._time+=n,this._time=this._time<0?0:this._time),this._lastStepTime=this._time,this.fire("time",this._time);for(let t=this._runners.length;t--;){const e=this._runners[t],r=e.runner;this._time-e.start<=0&&r.reset()}let i=!1;for(let t=0,e=this._runners.length;t<e;t++){const r=this._runners[t],s=r.runner;let o=n;const a=this._time-r.start;a<=0?i=!0:(a<o&&(o=a),s.active()&&(s.step(o).done?!0!==r.persist&&s.duration()-s.time()+this._time+r.persist<this._time&&(s.unschedule(),--t,--e):i=!0))}return 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it,this.transformId=1,this._haveReversed=!1,this._reverse=!1,this._loopsDone=0,this._swing=!1,this._wait=0,this._times=1,this._frameId=null,this._persist=!!this._isDeclarative\|\|null}static sanitise(t,e,r){let n=1,i=!1,s=0;return e=e??0,r=r\|\|"last","object"!=typeof(t=t??400)\|\|t instanceof se\|\|(e=t.delay??e,r=t.when??r,i=t.swing\|\|i,n=t.times??n,s=t.wait??s,t=t.duration??400),{duration:t,delay:e,swing:i,times:n,wait:s,when:r}}active(t){return null==t?this.enabled:(this.enabled=t,this)}addTransform(t){return this.transforms.lmultiplyO(t),this}after(t){return this.on("finished",t)}animate(t,e,r){const n=Xe.sanitise(t,e,r),i=new Xe(n.duration);return this._timeline&&i.timeline(this._timeline),this._element&&i.element(this._element),i.loop(n).schedule(n.delay,n.when)}clearTransform(){return this.transforms=new it,this}clearTransformsFromQueue(){this.done&&this._timeline&&this._timeline._runnerIds.includes(this.id)\|\|(this._queue=this._queue.filter((t=>!t.isTransform)))}delay(t){return this.animate(0,t)}duration(){return this._times(this._wait+this._duration)-this._wait}during(t){return this.queue(null,t)}ease(t){return this._stepper=new oe(t),this}element(t){return null==t?this._element:(this._element=t,t._prepareRunner(),this)}finish(){return this.step(1/0)}loop(t,e,r){return"object"==typeof t&&(e=t.swing,r=t.wait,t=t.times),this._times=t\|\|1/0,this._swing=e\|\|!1,this._wait=r\|\|0,!0===this._times&&(this._times=1/0),this}loops(t){const e=this._duration+this._wait;if(null==t){const t=Math.floor(this._time/e),r=(this._time-te)/this._duration;return Math.min(t+r,this._times)}const r=t%1,n=eMath.floor(t)+this._durationr;return this.time(n)}persist(t){return null==t?this._persist:(this._persist=t,this)}position(t){const e=this._time,r=this._duration,n=this._wait,i=this._times,s=this._swing,o=this._reverse;let a;if(null==t){const t=function(t){const e=sMath.floor(t%(2(n+r))/(n+r)),i=e&&!o\|\|!e&&o,a=Math.pow(-1,i)(t%(n+r))/r+i;return Math.max(Math.min(a,1),0)},h=i(n+r)-n;return a=e<=0?Math.round(t(1e-5)):e<h?t(e):Math.round(t(h-1e-5)),a}const h=Math.floor(this.loops()),u=s&&h%2==0;return a=h+(u&&!o\|\|o&&u?t:1-t),this.loops(a)}progress(t){return null==t?Math.min(1,this._time/this.duration()):this.time(tthis.duration())}queue(t,e,r,n){return this._queue.push({initialiser:t\|\|xt,runner:e\|\|xt,retarget:r,isTransform:n,initialised:!1,finished:!1}),this.timeline()&&this.timeline()._continue(),this}reset(){return this._reseted\|\|(this.time(0),this._reseted=!0),this}reverse(t){return this._reverse=null==t?!this._reverse:t,this}schedule(t,e,r){if(t instanceof ze\|\|(r=e,e=t,t=this.timeline()),!t)throw Error("Runner cannot be scheduled without timeline");return t.schedule(this,e,r),this}step(t){if(!this.enabled)return this;t=null==t?16:t,this._time+=t;const e=this.position(),r=this._lastPosition!==e&&this._time>=0;this._lastPosition=e;const n=this.duration(),i=this._lastTime<=0&&this._time>0,s=this._lastTime<n&&this._time>=n;this._lastTime=this._time,i&&this.fire("start",this);const o=this._isDeclarative;this.done=!o&&!s&&this._time>=n,this._reseted=!1;let a=!1;return(r\|\|o)&&(this._initialise(r),this.transforms=new it,a=this._run(o?t:e),this.fire("step",this)),this.done=this.done\|\|a&&o,s&&this.fire("finished",this),this}time(t){if(null==t)return this._time;const e=t-this._time;return this.step(e),this}timeline(t){return void 0===t?this._timeline:(this._timeline=t,this)}unschedule(){const t=this.timeline();return t&&t.unschedule(this),this}_initialise(t){if(t\|\|this._isDeclarative)for(let e=0,r=this._queue.length;e<r;++e){const 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this._queueNumber("leading",t)},viewbox(t,e,r,n){return this._queueObject("viewbox",new at(t,e,r,n))},update(t){return"object"!=typeof t?this.update({offset:arguments[0],color:arguments[1],opacity:arguments[2]}):(null!=t.opacity&&this.attr("stop-opacity",t.opacity),null!=t.color&&this.attr("stop-color",t.color),null!=t.offset&&this.attr("offset",t.offset),this)}}),L(Xe,{rx:jt,ry:Dt,from:qt,to:Gt}),D(Xe,"Runner");class $e extends At{constructor(t,e=t){super(E("svg",t),e),this.namespace()}defs(){return this.isRoot()?T(this.node.querySelector("defs"))\|\|this.put(new Et):this.root().defs()}isRoot(){return!this.node.parentNode\|\|!(this.node.parentNode instanceof M.window.SVGElement)&&"#document-fragment"!==this.node.parentNode.nodeName}namespace(){return this.isRoot()?this.attr({xmlns:v,version:"1.1"}).attr("xmlns:xlink",S,_):this.root().namespace()}removeNamespace(){return this.attr({xmlns:null,version:null}).attr("xmlns:xlink",null,_).attr("xmlns:svgjs",null,_)}root(){return 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t.domNode.insertAdjacentElement("beforebegin",e.domNode),this.baseOutlines.push(e),e}}Fr=new WeakMap;var Xr=r(282);class qr{constructor(t,e){this.svgDoc=t,this.elementsDrawing=new Tr(t,e),new MutationObserver((()=>{this.bonds.forEach((t=>{this.svgDoc.contains(t.base1.domNode)&&this.svgDoc.contains(t.base2.domNode)\|\|t.remove()}))})).observe(t,{childList:!0,subtree:!0})}get bonds(){return this.elementsDrawing.elements}set bonds(t){this.elementsDrawing.elements=t}}class Gr{constructor(t,e){this.svgDoc=t,this.defaultValues={attributes:{stroke:"#808080","stroke-width":"1"},basePadding1:6,basePadding2:6},this.bondsDrawing=new qr(t,e)}get primaryBonds(){return this.bondsDrawing.bonds}set primaryBonds(t){this.bondsDrawing.bonds=t}append(t){t.appendTo(this.svgDoc),this.primaryBonds.push(t)}add(t,e){let r=Xr.StraightBond.between(t,e);return this.append(r),r.set(this.defaultValues),r}}class Yr{constructor(t,e){this.svgDoc=t,this.defaultValues={attributes:{stroke:"#000000","stroke-width":"2"},basePadding1:6,basePadding2:6},this.bondsDrawing=new qr(t,e)}get secondaryBonds(){return this.bondsDrawing.bonds}set secondaryBonds(t){this.bondsDrawing.bonds=t}append(t){t.appendTo(this.svgDoc),this.secondaryBonds.push(t)}add(t,e){let r=Xr.StraightBond.between(t,e);return this.append(r),r.set(this.defaultValues),r}}var Ur,Hr=function(t,e,r,n){if("a"===r&&!n)throw new TypeError("Private accessor was defined without a getter");if("function"==typeof e?t!==e\|\|!n:!e.has(t))throw new TypeError("Cannot read private member from an object whose class did not declare it");return"m"===r?n:"a"===r?n.call(t):n?n.value:e.get(t)};class $r{constructor(){Ur.set(this,void 0),this.domNode=(new $e).node,this.domNode.setAttribute("viewBox",`0 0 ${Wr} ${Qr}`),this.domNode.setAttribute("width",`${Wr}`),this.domNode.setAttribute("height",`${Qr}`),this.basesDrawing=new jr(this.domNode,[]),function(t,e,r,n,i){if("m"===n)throw new TypeError("Private method is not writable");if("a"===n&&!i)throw new TypeError("Private accessor was defined without a setter");if("function"==typeof e?t!==e\|\|!i:!e.has(t))throw new TypeError("Cannot write private member to an object whose class did not declare it");"a"===n?i.call(t,r):i?i.value=r:e.set(t,r)}(this,Ur,new zr(this.domNode),"f"),this.primaryBondsDrawing=new Gr(this.domNode,[]),this.secondaryBondsDrawing=new Yr(this.domNode,[])}get outerXML(){return this.domNode.outerHTML}get innerXML(){return this.domNode.innerHTML}appendTo(t){t.appendChild(this.domNode)}remove(){this.domNode.remove()}get minX(){return this.domNode.viewBox.baseVal.x}set minX(t){let e=this.maxX-t,r=this.horizontalScaling;this.domNode.setAttribute("viewBox",`${t} ${this.minY} ${e} ${this.height}`),this.domNode.setAttribute("width",(re).toString())}get maxX(){return this.minX+this.width}set maxX(t){let e=t-this.minX,r=this.horizontalScaling;this.domNode.setAttribute("viewBox",`${this.minX} ${this.minY} ${e} ${this.height}`),this.domNode.setAttribute("width",(re).toString())}get minY(){return this.domNode.viewBox.baseVal.y}set minY(t){let e=this.maxY-t,r=this.verticalScaling;this.domNode.setAttribute("viewBox",`${this.minX} ${t} ${this.width} ${e}`),this.domNode.setAttribute("height",(re).toString())}get maxY(){return this.minY+this.height}set maxY(t){let e=t-this.minY,r=this.verticalScaling;this.domNode.setAttribute("viewBox",`${this.minX} ${this.minY} ${this.width} ${e}`),this.domNode.setAttribute("height",(re).toString())}setBoundaries({minX:t,maxX:e,minY:r,maxY:n}){this.minX=t,this.maxX=e,this.minY=r,this.maxY=n}get width(){return this.domNode.viewBox.baseVal.width}set width(t){this.maxX=this.minX+t}get height(){return this.domNode.viewBox.baseVal.height}set height(t){this.maxY=this.minY+t}get horizontalScaling(){let t=this.width;return this.domNode.width.baseVal.value/t}set horizontalScaling(t){let e=this.width;this.domNode.setAttribute("width",(te).toString())}get verticalScaling(){let t=this.height;return this.domNode.height.baseVal.value/t}set verticalScaling(t){let e=this.height;this.domNode.setAttribute("height",(te).toString())}setScaling(t){this.horizontalScaling=t,this.verticalScaling=t}get horizontalClientScaling(){return new Ar.HorizontalClientScaling(this.domNode).get()}get verticalClientScaling(){return new Ar.VerticalClientScaling(this.domNode).get()}get bases(){return this.basesDrawing.bases}appendBase(t){this.basesDrawing.append(t)}addBase(t){return this.basesDrawing.add(t)}get baseOutlines(){return Hr(this,Ur,"f").baseOutlines}outlineBase(t){return Hr(this,Ur,"f").outline(t)}appendBaseOutline(t){Hr(this,Ur,"f").append(t)}get primaryBonds(){return this.primaryBondsDrawing.primaryBonds}set primaryBonds(t){this.primaryBondsDrawing.primaryBonds=[...t]}appendPrimaryBond(t){this.primaryBondsDrawing.append(t)}addPrimaryBond(t,e){return this.primaryBondsDrawing.add(t,e)}get secondaryBonds(){return this.secondaryBondsDrawing.secondaryBonds}set secondaryBonds(t){this.secondaryBondsDrawing.secondaryBonds=[...t]}appendSecondaryBond(t){this.secondaryBondsDrawing.append(t)}addSecondaryBond(t,e){return this.secondaryBondsDrawing.add(t,e)}get defaultValues(){let t=this.primaryBondsDrawing,e=this.secondaryBondsDrawing;return{get primaryBonds(){return t.defaultValues},set primaryBonds(e){t.defaultValues=e},get secondaryBonds(){return e.defaultValues},set secondaryBonds(t){e.defaultValues=t}}}get contentBBox(){return this.domNode.getBBox()}setPadding(t){let e=this.contentBBox;this.setBoundaries({minX:e.x-t,maxX:e.x+e.width+t,minY:e.y-t,maxY:e.y+e.height+t})}reset(){this.domNode.innerHTML="",this.basesDrawing.bases=[],Hr(this,Ur,"f").baseOutlines=[],this.primaryBondsDrawing.primaryBonds=[],this.secondaryBondsDrawing.secondaryBonds=[],[...this.domNode.attributes].forEach((t=>this.domNode.removeAttribute(t.name))),this.domNode.setAttribute("viewBox",`0 0 ${Wr} ${Qr}`),this.domNode.setAttribute("width",`${Wr}`),this.domNode.setAttribute("height",`${Qr}`)}}Ur=new WeakMap;const Wr=250,Qr=250;var Jr=r(127),Zr=r(661),Kr=r(986);class tn{constructor(t){this.targetDrawing=t}draw(t,e){let r=[...t].map((t=>this.targetDrawing.addBase(t)));(0,Jr.consecutivePairs)(r).forEach((t=>this.targetDrawing.addPrimaryBond(...t)));let n=[...(0,Jr.parseDotBracket)(r,e)];n.forEach((t=>this.targetDrawing.addSecondaryBond(...t))),r.forEach((t=>t.bringToFront()));let i=1.87(0,Kr.mean)(r.map((t=>t.bbox.height)));(0,Zr.radialize)(r,n,{spacing:i,basePairSpacing:i/2,hairpinLoopSpacing:i/2})}}var en,rn,nn,sn,on=function(t,e,r,n){if("a"===r&&!n)throw new TypeError("Private accessor was defined without a getter");if("function"==typeof e?t!==e\|\|!n:!e.has(t))throw new TypeError("Cannot read private member from an object whose class did not declare it");return"m"===r?n:"a"===r?n.call(t):n?n.value:e.get(t)};class an{constructor(t){en.add(this),rn.set(this,void 0),function(t,e,r,n,i){if("m"===n)throw new TypeError("Private method is not writable");if("a"===n&&!i)throw new TypeError("Private accessor was defined without a setter");if("function"==typeof e?t!==e\|\|!i:!e.has(t))throw new TypeError("Cannot write private member to an object whose class did not declare it");"a"===n?i.call(t,r):i?i.value=r:e.set(t,r)}(this,rn,t,"f")}draw(t){t.rnaComplexes.forEach((e=>{e.rnaMolecules.forEach((e=>{let r=e.sequence.map((e=>on(this,en,"m",nn).call(this,e,t))),n=(0,Kr.mean)(r.map((t=>t.bbox.height)));on(this,rn,"f").defaultValues.primaryBonds.attributes["stroke-width"]=""+.125n,on(this,rn,"f").defaultValues.primaryBonds.basePadding1=.6n,on(this,rn,"f").defaultValues.primaryBonds.basePadding2=.6n,(0,Jr.consecutivePairs)(r).forEach((t=>on(this,rn,"f").addPrimaryBond(...t))),on(this,rn,"f").defaultValues.secondaryBonds.attributes["stroke-width"]=""+.15n,on(this,rn,"f").defaultValues.secondaryBonds.basePadding1=.5n,on(this,rn,"f").defaultValues.secondaryBonds.basePadding2=.5*n,new Set(e.basePairs.map((t=>JSON.stringify(t)))).forEach((e=>on(this,en,"m",sn).call(this,JSON.parse(e),r,t)))}))}))}}rn=new WeakMap,en=new WeakSet,nn=function(t,e){let r=on(this,rn,"f").addBase(t.residueName);return t.classes.forEach((t=>{e.classes.filter((e=>e.name==t)).forEach((t=>r.setAttributes(Object.assign(Object.assign({},t),{name:void 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