npm - @rivm-loculus-tools/common-frontend - Versions diffs - 0.9.0 → 0.11.0 - Mend

@rivm-loculus-tools/common-frontend 0.9.0 → 0.11.0

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Files changed (63) hide show

package/dist/components/ui/SearchBar/index.js CHANGED Viewed

@@ -67,6 +67,7 @@ var _ = i(t, {
 		C
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package/dist/components/ui/SearchBar/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","names":["_Fragment","SearchIcon","KeyboardArrowUpIcon","KeyboardArrowDownIcon","CloseIcon","SearchBarFilledInput","styled","FilledInput","theme","SearchBar","useThemeProps","inProps","useTheme","searchBarTheme","useMemo","inputRef","useRef","arrowUpButtonRef","arrowDownButtonRef","onTextInputChange","useCallback","nextSearchText","event","onSearchQueryChange","onClearButtonClick","onTextInputKeyDown","numResults","onHighlightedIndexChange","onUpArrowButtonClick","newHighlightedIndex","highlightedIndex","onDownArrowButtonClick","onGenericKeyDown","nextFocusableElement","previousFocusableElement","searchResultStatusText","searchQuery","allowNavigation","truncated","InputAdornment","Box","Fragment","IconButton"],"sources":["../../../../src/components/ui/SearchBar/SearchBar.tsx"],"sourcesContent":["import type {\n ChangeEvent,\n KeyboardEvent,\n} from 'react';\nimport {\n useCallback,\n useMemo,\n useRef,\n} from 'react';\nimport {\n Box,\n FilledInput,\n IconButton,\n InputAdornment,\n styled,\n useTheme,\n useThemeProps,\n} from '@mui/material';\nimport type {\n ComponentsOverrides,\n Theme,\n} from '@mui/material/styles';\nimport SearchIcon from '@mui/icons-material/Search';\nimport KeyboardArrowUpIcon from '@mui/icons-material/KeyboardArrowUp';\nimport KeyboardArrowDownIcon from '@mui/icons-material/KeyboardArrowDown';\nimport CloseIcon from '@mui/icons-material/Close';\n\nexport type SearchBarProps = {\n allowNavigation?: boolean;\n highlightedIndex?: null \| number;\n numResults?: number;\n onHighlightedIndexChange?: (index: number) => void;\n onSearchQueryChange: (query: string) => void;\n searchQuery: string;\n truncated?: boolean;\n};\n\nexport interface SearchBarTheme {\n buttonColor: string;\n styleOverrides?: ComponentsOverrides<Theme>['MuiFilledInput'];\n}\n\nconst SearchBarFilledInput = styled(FilledInput, {\n name: 'RivmLoculusToolsCommonFrontendSearchBar',\n slot: 'Root',\n})(({ theme }) => ({\n backgroundColor: theme.palette.background.paper,\n height: theme.spacing(4),\n}));\n\nexport const SearchBar = (inProps: SearchBarProps) => {\n const {\n allowNavigation,\n highlightedIndex,\n numResults = 0,\n onHighlightedIndexChange,\n onSearchQueryChange,\n searchQuery,\n truncated,\n } = useThemeProps({ name: 'RivmLoculusToolsCommonFrontendSearchBar', props: inProps });\n const theme = useTheme();\n const searchBarTheme = useMemo<SearchBarTheme>(() => ({\n ...{\n buttonColor: theme.palette.primary.main,\n } satisfies SearchBarTheme,\n ...(theme.components?.RivmLoculusToolsCommonFrontendSearchBar ?? {}),\n }), [theme]);\n\n\n const inputRef = useRef<HTMLInputElement>(null);\n const arrowUpButtonRef = useRef<HTMLButtonElement>(null);\n const arrowDownButtonRef = useRef<HTMLButtonElement>(null);\n\n const onTextInputChange = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n const nextSearchText = event.target.value;\n onSearchQueryChange(nextSearchText);\n }, [onSearchQueryChange]);\n\n const onClearButtonClick = useCallback(() => {\n onSearchQueryChange('');\n inputRef.current?.focus();\n }, [onSearchQueryChange]);\n\n const onTextInputKeyDown = useCallback((event: KeyboardEvent<HTMLInputElement>) => {\n // on enter press, highlight the first result and focus the down arrow button\n if (event.key === 'Enter') {\n if (!numResults) {\n return;\n }\n event.preventDefault();\n onHighlightedIndexChange?.(0);\n arrowDownButtonRef.current?.focus();\n }\n }, [numResults, onHighlightedIndexChange]);\n\n const onUpArrowButtonClick = useCallback(() => {\n // goto previous result\n if (!numResults) {\n return;\n }\n const newHighlightedIndex = highlightedIndex === null \|\| highlightedIndex === undefined \|\| Number.isNaN(highlightedIndex) \|\| highlightedIndex <= 0 ? numResults - 1 : highlightedIndex - 1;\n\n onHighlightedIndexChange?.(newHighlightedIndex);\n }, [numResults, highlightedIndex, onHighlightedIndexChange]);\n\n const onDownArrowButtonClick = useCallback(() => {\n // goto next result\n if (!numResults) {\n return;\n }\n const newHighlightedIndex = highlightedIndex === null \|\| highlightedIndex === undefined \|\| Number.isNaN(highlightedIndex) \|\| highlightedIndex >= numResults - 1 ? 0 : highlightedIndex + 1;\n onHighlightedIndexChange?.(newHighlightedIndex);\n }, [numResults, highlightedIndex, onHighlightedIndexChange]);\n\n const onGenericKeyDown = useCallback((event: KeyboardEvent<HTMLButtonElement>) => {\n // arrow right, focus the next focusable element\n if (event.key === 'ArrowRight') {\n event.preventDefault();\n const nextFocusableElement = event.currentTarget.nextElementSibling as HTMLElement;\n if (nextFocusableElement) {\n nextFocusableElement.focus();\n }\n }\n // arrow left, focus the previous focusable element\n if (event.key === 'ArrowLeft') {\n event.preventDefault();\n if (event.target === arrowUpButtonRef.current) {\n inputRef.current?.focus();\n return;\n }\n const previousFocusableElement = event.currentTarget.previousElementSibling as HTMLElement;\n if (previousFocusableElement) {\n previousFocusableElement.focus();\n }\n }\n }, []);\n\n const searchResultStatusText = useMemo(() => {\n if (!searchQuery) {\n return '';\n }\n if (searchQuery && (Number.isNaN(numResults) \|\| numResults <= 0)) {\n return 'No results';\n } else if (highlightedIndex === null \|\| highlightedIndex === undefined \|\| Number.isNaN(highlightedIndex) \|\| highlightedIndex < 0 \|\| !allowNavigation) {\n return `${numResults}${truncated ? '+' : ''} results`;\n } else if (allowNavigation) {\n return `${highlightedIndex + 1}/${numResults}${truncated ? '+' : ''} results`;\n }\n return '';\n }, [searchQuery, numResults, highlightedIndex, allowNavigation, truncated]);\n\n\n return (\n <SearchBarFilledInput\n endAdornment={(\n <InputAdornment position={'end'}>\n {searchResultStatusText && (\n <Box\n aria-atomic={'true'}\n aria-live={'polite'}\n role={'status'}\n sx={{\n fontSize: '1rem',\n }}\n >\n {searchResultStatusText}\n </Box>\n )}\n {numResults > 0 && allowNavigation && (\n <>\n <IconButton\n aria-label={'Goto previous search result'}\n disabled={!numResults}\n edge={'end'}\n onClick={onUpArrowButtonClick}\n onKeyDown={onGenericKeyDown}\n ref={arrowUpButtonRef}\n sx={{ color: searchBarTheme.buttonColor }}\n >\n <KeyboardArrowUpIcon />\n </IconButton>\n <IconButton\n aria-label={'Goto next search result'}\n disabled={!numResults}\n edge={'end'}\n onClick={onDownArrowButtonClick}\n onKeyDown={onGenericKeyDown}\n ref={arrowDownButtonRef}\n sx={{ color: searchBarTheme.buttonColor }}\n >\n <KeyboardArrowDownIcon />\n </IconButton>\n </>\n )}\n {searchQuery && (\n <IconButton\n aria-label={'Clear'}\n edge={'end'}\n onClick={onClearButtonClick}\n onKeyDown={onGenericKeyDown}\n >\n <CloseIcon />\n </IconButton>\n )}\n </InputAdornment>\n )}\n fullWidth\n inputRef={inputRef}\n name={'Search'}\n onChange={onTextInputChange}\n onKeyDown={onTextInputKeyDown}\n placeholder={'Search'}\n size={'small'}\n slotProps={{\n input: {\n 'aria-label': 'Search',\n sx: {\n '&::-webkit-search-cancel-button': {\n display: 'none',\n },\n fontSize: '1rem',\n height: theme.spacing(4),\n outline: 'none !important',\n paddingBottom: '0 !important',\n paddingTop: '0 !important',\n },\n },\n }}\n startAdornment={(\n <InputAdornment position={'start'}>\n <SearchIcon fontSize={'small'} />\n </InputAdornment>\n )}\n type={'search'}\n value={searchQuery}\n />\n );\n};\n"],"mappings":";;;;;;;;AA0CA,IAAMK,IAAuBC,EAAOC,GAAa;CAC/C,MAAM;CACN,MAAM;AACR,CAAC,CAAC,EAAE,EAAE,gBAAa;CACjB,iBAAiBC,EAAM,QAAQ,WAAW;CAC1C,QAAQA,EAAM,QAAQ,CAAC;AACzB,EAAE,GAEWC,KAAa,MAA4B;CACpD,IAAM,EACJ,oBACA,qBACA,gBAAa,GACb,6BACA,wBACA,gBACA,iBACEC,EAAc;EAAE,MAAM;EAA2C,OAAOC;CAAQ,CAAC,GAC/EH,IAAQI,EAAS,GACjBC,IAAiBC,SAA+B;EAElD,aAAaN,EAAM,QAAQ,QAAQ;EAErC,GAAIA,EAAM,YAAY,2CAA2C,CAAC;CACpE,IAAI,CAACA,CAAK,CAAC,GAGLO,IAAWC,EAAyB,IAAI,GACxCC,IAAmBD,EAA0B,IAAI,GACjDE,IAAqBF,EAA0B,IAAI,GAEnDG,IAAoBC,GAAa,MAAyC;EAC9E,IAAMC,IAAiBC,EAAM,OAAO;EACpC,EAAoBD,CAAc;CACpC,GAAG,CAACE,CAAmB,CAAC,GAElBC,IAAqBJ,QAAkB;EAE3C,AADAG,EAAoB,EAAE,GACtBR,EAAS,SAAS,MAAM;CAC1B,GAAG,CAACQ,CAAmB,CAAC,GAElBE,IAAqBL,GAAa,MAA2C;EAEjF,IAAIE,EAAM,QAAQ,SAAS;GACzB,IAAI,CAACI,GACH;GAIF,AAFAJ,EAAM,eAAe,GACrBK,IAA2B,CAAC,GAC5BT,EAAmB,SAAS,MAAM;EACpC;CACF,GAAG,CAACQ,GAAYC,CAAwB,CAAC,GAEnCC,IAAuBR,QAAkB;EAE7C,IAAI,CAACM,GACH;EAEF,IAAMG,IAAsBC,KAAqB,QAA0C,OAAO,MAAMA,CAAgB,KAAKA,KAAoB,IAAIJ,IAAa,IAAII,IAAmB;EAEzL,IAA2BD,CAAmB;CAChD,GAAG;EAACH;EAAYI;EAAkBH;CAAwB,CAAC,GAErDI,IAAyBX,QAAkB;EAE/C,IAAI,CAACM,GACH;EAEF,IAAMG,IAAsBC,KAAqB,QAA0C,OAAO,MAAMA,CAAgB,KAAKA,KAAoBJ,IAAa,IAAI,IAAII,IAAmB;EACzL,IAA2BD,CAAmB;CAChD,GAAG;EAACH;EAAYI;EAAkBH;CAAwB,CAAC,GAErDK,IAAmBZ,GAAa,MAA4C;EAEhF,IAAIE,EAAM,QAAQ,cAAc;GAC9B,EAAM,eAAe;GACrB,IAAMW,IAAuBX,EAAM,cAAc;GACjD,AAAIW,KACFA,EAAqB,MAAM;EAE/B;EAEA,IAAIX,EAAM,QAAQ,aAAa;GAE7B,IADAA,EAAM,eAAe,GACjBA,EAAM,WAAWL,EAAiB,SAAS;IAC7C,EAAS,SAAS,MAAM;IACxB;GACF;GACA,IAAMiB,IAA2BZ,EAAM,cAAc;GACrD,AAAIY,KACFA,EAAyB,MAAM;EAEnC;CACF,GAAG,CAAC,CAAC,GAECC,IAAyBrB,QACxBsB,IAGDA,MAAgB,OAAO,MAAMV,CAAU,KAAKA,KAAc,KACrD,eACEI,KAAqB,QAA0C,OAAO,MAAMA,CAAgB,KAAKA,IAAmB,KAAK,CAACO,IAC5H,GAAGX,IAAaY,IAAY,MAAM,GAAG,YACnCD,IACF,GAAGP,IAAmB,EAAE,GAAGJ,IAAaY,IAAY,MAAM,GAAG,YAE/D,KATE,IAUR;EAACF;EAAaV;EAAYI;EAAkBO;EAAiBC;CAAS,CAAC;CAG1E,OACE,kBAACjC,GAAD;EACE,cACE,kBAACkC,GAAD;GAAgB,UAAU;GAA1B,UAAA;IACGJ,KACC,kBAACK,GAAD;KACE,eAAa;KACb,aAAW;KACX,MAAM;KACN,IAAI,EACF,UAAU,OACZ;KAEC,UAAAL;IACE,CAAA;IAENT,IAAa,KAAKW,KACjB,kBAAArC,GAAA,EAAA,UAAA,CACE,kBAAC0C,GAAD;KACE,cAAY;KACZ,UAAU,CAAChB;KACX,MAAM;KACN,SAASE;KACT,WAAWI;KACX,KAAKf;KACL,IAAI,EAAE,OAAOJ,EAAe,YAAY;KAExC,UAAA,kBAACX,GAAD,CAAsB,CAAA;IACZ,CAAA,GACZ,kBAACwC,GAAD;KACE,cAAY;KACZ,UAAU,CAAChB;KACX,MAAM;KACN,SAASK;KACT,WAAWC;KACX,KAAKd;KACL,IAAI,EAAE,OAAOL,EAAe,YAAY;KAExC,UAAA,kBAACV,GAAD,CAAwB,CAAA;IACd,CAAA,CACZ,EAAA,CAAA;IAEHiC,KACC,kBAACM,GAAD;KACE,cAAY;KACZ,MAAM;KACN,SAASlB;KACT,WAAWQ;KAEX,UAAA,kBAAC5B,GAAD,CAAY,CAAA;IACF,CAAA;GAEA;;EAElB,WAAA;EACU;EACV,MAAM;EACN,UAAUe;EACV,WAAWM;EACX,aAAa;EACb,MAAM;EACN,WAAW,EACT,OAAO;GACL,cAAc;GACd,IAAI;IACF,mCAAmC,EACjC,SAAS,OACX;IACA,UAAU;IACV,QAAQjB,EAAM,QAAQ,CAAC;IACvB,SAAS;IACT,eAAe;IACf,YAAY;GACd;EACF,EACF;EACA,gBACE,kBAAC+B,GAAD;GAAgB,UAAU;GACxB,UAAA,kBAACtC,GAAD,EAAY,UAAU,QAAU,CAAA;EAClB,CAAA;EAElB,MAAM;EACN,OAAOmC;CACR,CAAA;AAEL"}
1	+ {"version":3,"file":"index.js","names":["_Fragment","SearchIcon","KeyboardArrowUpIcon","KeyboardArrowDownIcon","CloseIcon","SearchBarFilledInput","styled","FilledInput","theme","SearchBar","useThemeProps","inProps","useTheme","searchBarTheme","useMemo","inputRef","useRef","arrowUpButtonRef","arrowDownButtonRef","onTextInputChange","useCallback","nextSearchText","event","onSearchQueryChange","onClearButtonClick","onTextInputKeyDown","numResults","onHighlightedIndexChange","onUpArrowButtonClick","newHighlightedIndex","highlightedIndex","onDownArrowButtonClick","onGenericKeyDown","nextFocusableElement","previousFocusableElement","searchResultStatusText","searchQuery","allowNavigation","truncated","InputAdornment","Box","Fragment","IconButton"],"sources":["../../../../src/components/ui/SearchBar/SearchBar.tsx"],"sourcesContent":["import type {\n ChangeEvent,\n KeyboardEvent,\n} from 'react';\nimport {\n useCallback,\n useMemo,\n useRef,\n} from 'react';\nimport {\n Box,\n FilledInput,\n IconButton,\n InputAdornment,\n styled,\n useTheme,\n useThemeProps,\n} from '@mui/material';\nimport type {\n ComponentsOverrides,\n Theme,\n} from '@mui/material/styles';\nimport SearchIcon from '@mui/icons-material/Search';\nimport KeyboardArrowUpIcon from '@mui/icons-material/KeyboardArrowUp';\nimport KeyboardArrowDownIcon from '@mui/icons-material/KeyboardArrowDown';\nimport CloseIcon from '@mui/icons-material/Close';\n\nexport type SearchBarProps = {\n allowNavigation?: boolean;\n highlightedIndex?: null \| number;\n numResults?: number;\n onHighlightedIndexChange?: (index: number) => void;\n onSearchQueryChange: (query: string) => void;\n searchQuery: string;\n truncated?: boolean;\n};\n\nexport interface SearchBarTheme {\n buttonColor: string;\n styleOverrides?: ComponentsOverrides<Theme>['MuiFilledInput'];\n}\n\nconst SearchBarFilledInput = styled(FilledInput, {\n name: 'RivmLoculusToolsCommonFrontendSearchBar',\n slot: 'Root',\n})(({ theme }) => ({\n backgroundColor: theme.palette.background.paper,\n height: theme.spacing(4),\n}));\n\nexport const SearchBar = (inProps: SearchBarProps) => {\n const {\n allowNavigation,\n highlightedIndex,\n numResults = 0,\n onHighlightedIndexChange,\n onSearchQueryChange,\n searchQuery,\n truncated,\n } = useThemeProps({ name: 'RivmLoculusToolsCommonFrontendSearchBar', props: inProps });\n const theme = useTheme();\n const searchBarTheme = useMemo<SearchBarTheme>(() => ({\n ...{\n buttonColor: theme.palette.primary.main,\n } satisfies SearchBarTheme,\n ...(theme.components?.RivmLoculusToolsCommonFrontendSearchBar ?? {}),\n }), [theme]);\n\n\n const inputRef = useRef<HTMLInputElement>(null);\n const arrowUpButtonRef = useRef<HTMLButtonElement>(null);\n const arrowDownButtonRef = useRef<HTMLButtonElement>(null);\n\n const onTextInputChange = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n const nextSearchText = event.target.value;\n onSearchQueryChange(nextSearchText);\n }, [onSearchQueryChange]);\n\n const onClearButtonClick = useCallback(() => {\n onSearchQueryChange('');\n inputRef.current?.focus();\n }, [onSearchQueryChange]);\n\n const onTextInputKeyDown = useCallback((event: KeyboardEvent<HTMLInputElement>) => {\n // on enter press, highlight the first result and focus the down arrow button\n if (event.key === 'Enter') {\n if (!numResults) {\n return;\n }\n event.preventDefault();\n onHighlightedIndexChange?.(0);\n arrowDownButtonRef.current?.focus();\n }\n }, [numResults, onHighlightedIndexChange]);\n\n const onUpArrowButtonClick = useCallback(() => {\n // goto previous result\n if (!numResults) {\n return;\n }\n const newHighlightedIndex = highlightedIndex === null \|\| highlightedIndex === undefined \|\| Number.isNaN(highlightedIndex) \|\| highlightedIndex <= 0 ? numResults - 1 : highlightedIndex - 1;\n\n onHighlightedIndexChange?.(newHighlightedIndex);\n }, [numResults, highlightedIndex, onHighlightedIndexChange]);\n\n const onDownArrowButtonClick = useCallback(() => {\n // goto next result\n if (!numResults) {\n return;\n }\n const newHighlightedIndex = highlightedIndex === null \|\| highlightedIndex === undefined \|\| Number.isNaN(highlightedIndex) \|\| highlightedIndex >= numResults - 1 ? 0 : highlightedIndex + 1;\n onHighlightedIndexChange?.(newHighlightedIndex);\n }, [numResults, highlightedIndex, onHighlightedIndexChange]);\n\n const onGenericKeyDown = useCallback((event: KeyboardEvent<HTMLButtonElement>) => {\n // arrow right, focus the next focusable element\n if (event.key === 'ArrowRight') {\n event.preventDefault();\n const nextFocusableElement = event.currentTarget.nextElementSibling as HTMLElement;\n if (nextFocusableElement) {\n nextFocusableElement.focus();\n }\n }\n // arrow left, focus the previous focusable element\n if (event.key === 'ArrowLeft') {\n event.preventDefault();\n if (event.target === arrowUpButtonRef.current) {\n inputRef.current?.focus();\n return;\n }\n const previousFocusableElement = event.currentTarget.previousElementSibling as HTMLElement;\n if (previousFocusableElement) {\n previousFocusableElement.focus();\n }\n }\n }, []);\n\n const searchResultStatusText = useMemo(() => {\n if (!searchQuery) {\n return '';\n }\n if (searchQuery && (Number.isNaN(numResults) \|\| numResults <= 0)) {\n return 'No results';\n } else if (highlightedIndex === null \|\| highlightedIndex === undefined \|\| Number.isNaN(highlightedIndex) \|\| highlightedIndex < 0 \|\| !allowNavigation) {\n return `${numResults}${truncated ? '+' : ''} results`;\n } else if (allowNavigation) {\n return `${highlightedIndex + 1}/${numResults}${truncated ? 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package/dist/context/pageCommonContext/PageCommonContext.d.ts CHANGED Viewed

@@ -8,6 +8,7 @@ export type PageCommonConfig = {
     readonly beforeAppBarRightComponent?: ReactNode;
 };
 export type PageCommonContextData = {
+    readonly drawerButtonId: string;
     readonly drawerContainerId: string;
     readonly isDrawerOpen: boolean;
     readonly isNoInteraction: boolean;

package/dist/context/pageCommonContext/index.js CHANGED Viewed

@@ -2,21 +2,23 @@ import { jsx as e } from "react/jsx-runtime";
 import { createContext as t, useId as n, useMemo as r, useState as i } from "react";
 // src/context/pageCommonContext/PageCommonContext.ts
 var a = t({}), o = ({ children: t, ...o }) => {
-	let [s, c] = i(!1), [l, u] = i(!1), d = n(), f = r(() => ({
+	let [s, c] = i(!1), [l, u] = i(!1), d = n(), f = n(), p = r(() => ({
 		...o,
+		drawerButtonId: f,
 		drawerContainerId: d,
 		isDrawerOpen: s,
 		isNoInteraction: l,
 		setIsDrawerOpen: c,
 		setIsNoInteraction: u
 	}), [
-		s,
-		l,
+		o,
+		f,
 		d,
-		o
+		s,
+		l
 	]);
 	return /* @__PURE__ */ e(a, {
-		value: f,
+		value: p,
 		children: t
 	});
 };

package/dist/context/pageCommonContext/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","names":["PageCommonContext","createContext","PageCommonContextProvider","props","isDrawerOpen","setIsDrawerOpen","useState","isNoInteraction","setIsNoInteraction","drawerContainerId","useId","contextValue","useMemo"],"sources":["../../../src/context/pageCommonContext/PageCommonContext.ts","../../../src/context/pageCommonContext/PageCommonContextProvider.tsx"],"sourcesContent":["import type { ReactNode } from 'react';\nimport { createContext } from 'react';\n\nexport type PageCommonConfig = {\n readonly afterAppBarComponent?: ReactNode;\n readonly afterAppBarRightComponent?: ReactNode;\n readonly appBarHeight?: number;\n readonly appBarIcon?: ReactNode;\n readonly beforeAppBarComponent?: ReactNode;\n readonly beforeAppBarRightComponent?: ReactNode;\n};\n\nexport type PageCommonContextData = {\n readonly drawerContainerId: string;\n readonly isDrawerOpen: boolean;\n readonly isNoInteraction: boolean;\n readonly setIsDrawerOpen: (open: boolean) => void;\n readonly setIsNoInteraction: (open: boolean) => void;\n} & PageCommonConfig;\n\nexport const PageCommonContext = createContext<PageCommonContextData>({} as PageCommonContextData);\n","import {\n useId,\n useMemo,\n useState,\n} from 'react';\nimport type { PropsWithChildren } from 'react';\n\nimport type {\n PageCommonConfig,\n PageCommonContextData,\n} from './PageCommonContext';\nimport { PageCommonContext } from './PageCommonContext';\n\nexport type PageCommonContextProviderProps = PropsWithChildren<PageCommonConfig>;\n\nexport const PageCommonContextProvider = ({ children, ...props }: PageCommonContextProviderProps) => {\n const [isDrawerOpen, setIsDrawerOpen] = useState(false);\n const [isNoInteraction, setIsNoInteraction] = useState(false);\n const drawerContainerId = useId();\n\n const contextValue = useMemo<PageCommonContextData>(() => {\n return {\n ...props,\n drawerContainerId,\n isDrawerOpen,\n isNoInteraction,\n setIsDrawerOpen,\n setIsNoInteraction,\n };\n }, [~~isDrawerOpen~~, ~~isNoInteraction~~, drawerContainerId, ~~props~~]);\n\n return (\n <PageCommonContext value={contextValue}>\n { children }\n </PageCommonContext>\n );\n};\n"],"mappings":";;;~~AAoBA~~,IAAaA,IAAoBC,EAAqC,CAAC,CAA0B,~~GCLpFC~~,KAA6B,EAAE,aAAU,GAAGC,QAA4C;CACnG,IAAM,CAACC,GAAcC,KAAmBC,EAAS,EAAK,GAChD,CAACC,GAAiBC,KAAsBF,EAAS,EAAK,GACtDG,IAAoBC,EAAM,~~GAE1BC~~,IAAeC,SACZ;EACL,~~GAAGT~~;EACH;EACA;EACA;EACA;EACA;CACF,IACC;~~EAACC~~;~~EAAcG~~;~~EAAiBE~~;~~EAAmBN~~;~~CAAK~~,CAAC;~~CAE5D~~,OACE,~~kBAACH~~,GAAD;EAAmB,~~OAAOW~~;EACtB;CACe,CAAA;AAEvB"}
1	+ {"version":3,"file":"index.js","names":["PageCommonContext","createContext","PageCommonContextProvider","props","isDrawerOpen","setIsDrawerOpen","useState","isNoInteraction","setIsNoInteraction","drawerContainerId","useId","drawerButtonId","contextValue","useMemo"],"sources":["../../../src/context/pageCommonContext/PageCommonContext.ts","../../../src/context/pageCommonContext/PageCommonContextProvider.tsx"],"sourcesContent":["import type { ReactNode } from 'react';\nimport { createContext } from 'react';\n\nexport type PageCommonConfig = {\n readonly afterAppBarComponent?: ReactNode;\n readonly afterAppBarRightComponent?: ReactNode;\n readonly appBarHeight?: number;\n readonly appBarIcon?: ReactNode;\n readonly beforeAppBarComponent?: ReactNode;\n readonly beforeAppBarRightComponent?: ReactNode;\n};\n\nexport type PageCommonContextData = {\n readonly drawerButtonId: string;\n readonly drawerContainerId: string;\n readonly isDrawerOpen: boolean;\n readonly isNoInteraction: boolean;\n readonly setIsDrawerOpen: (open: boolean) => void;\n readonly setIsNoInteraction: (open: boolean) => void;\n} & PageCommonConfig;\n\nexport const PageCommonContext = createContext<PageCommonContextData>({} as PageCommonContextData);\n","import {\n useId,\n useMemo,\n useState,\n} from 'react';\nimport type { PropsWithChildren } from 'react';\n\nimport type {\n PageCommonConfig,\n PageCommonContextData,\n} from './PageCommonContext';\nimport { PageCommonContext } from './PageCommonContext';\n\nexport type PageCommonContextProviderProps = PropsWithChildren<PageCommonConfig>;\n\nexport const PageCommonContextProvider = ({ children, ...props }: PageCommonContextProviderProps) => {\n const [isDrawerOpen, setIsDrawerOpen] = useState(false);\n const [isNoInteraction, setIsNoInteraction] = useState(false);\n const drawerContainerId = useId();\n const drawerButtonId = useId();\n\n const contextValue = useMemo<PageCommonContextData>(() => {\n return {\n ...props,\n drawerButtonId,\n drawerContainerId,\n isDrawerOpen,\n isNoInteraction,\n setIsDrawerOpen,\n setIsNoInteraction,\n };\n }, [props, drawerButtonId, drawerContainerId, isDrawerOpen, isNoInteraction]);\n\n return (\n <PageCommonContext value={contextValue}>\n { children }\n </PageCommonContext>\n );\n};\n"],"mappings":";;;AAqBA,IAAaA,IAAoBC,EAAqC,CAAC,CAA0B,GCNpFC,KAA6B,EAAE,aAAU,GAAGC,QAA4C;CACnG,IAAM,CAACC,GAAcC,KAAmBC,EAAS,EAAK,GAChD,CAACC,GAAiBC,KAAsBF,EAAS,EAAK,GACtDG,IAAoBC,EAAM,GAC1BC,IAAiBD,EAAM,GAEvBE,IAAeC,SACZ;EACL,GAAGV;EACH;EACA;EACA;EACA;EACA;EACA;CACF,IACC;EAACA;EAAOQ;EAAgBF;EAAmBL;EAAcG;CAAe,CAAC;CAE5E,OACE,kBAACP,GAAD;EAAmB,OAAOY;EACtB;CACe,CAAA;AAEvB"}

package/dist/models/url.models.d.ts ADDED Viewed

@@ -0,0 +1,9 @@
+export type UrlParams = {
+    authClientId?: string;
+    authEndpoint?: string;
+    authRealm?: string;
+    inputFastaUrl?: string;
+    inputMetadataUrl?: string;
+    organism?: string;
+    returnUrl?: string;
+};

package/dist/models/url.models.js ADDED Viewed

File without changes

package/dist/utils/MetaDataUtil/MetaDataUtil.d.ts CHANGED Viewed

@@ -7,6 +7,7 @@ export declare class MetaDataUtil {
         bestColumn: null | string;
         matchCounts: Record<string, number>;
     };
+    static getGroupId(metaData: MetadataParseResult): string;
     static getHighlightedIds(query: string, allAccessions: string[], metadataRecords: MetadataRecord[], matchKeyField?: null | string): string[];
     /**
      * Count FASTA sequence ID matches for each metadata column.
@@ -16,5 +17,5 @@ export declare class MetaDataUtil {
      * Retrieve metadata record for a given sample/node name with fallback strategies.
      */
     static readonly getRecordForSample: (metadata: MetadataParseResult | null | undefined, sampleId: string, matchKeyField?: null | string) => MetadataRecord | undefined;
-    static parseTsv: (content: string) => MetadataParseResult;
+    static parseTsv(content: string): MetadataParseResult;
 }

package/dist/utils/MetaDataUtil/index.js CHANGED Viewed

@@ -42,6 +42,9 @@ var e = class e {
 			matchCounts: i
 		};
 	};
+	static getGroupId(e) {
+		return e?.columns?.includes("groupId") ? Object.keys(e.recordsByColumn.groupId)?.[0] ?? "" : "";
+	}
 	static getHighlightedIds(e, t, n, r = null) {
 		let i = e.trim().toLowerCase();
 		if (!i) return [];
@@ -81,7 +84,7 @@ var e = class e {
 			}
 		}
 	};
-	static parseTsv = (e) => {
+	static parseTsv(e) {
 		if (!e?.trim()) return {
 			columns: [],
 			error: "Empty metadata content provided.",
@@ -125,7 +128,7 @@ var e = class e {
 			recordsByColumn: c,
 			recordsBySampleId: s
 		};
-	};
+	}
 };
 export { e as MetaDataUtil };

package/dist/utils/MetaDataUtil/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","names":["MetaDataUtil","matchCounts","columns","recordsByColumn","fastaIds","bestColumn","maxMatches","prioritizedKeys","col","count","currentPriority","newPriority","pKey","found","c","trimmed","query","matched","allAccessions","acc","metadataRecords","matchKeyField","rec","val","colDict","id","metadata","sampleId","\"displayName\"","\"accessionVersion\"","match","content","lines","headerLine","delimiter","records","recordsByAccession","recordsBySampleId","i","line","values","record","colIdx","accessionKey","sampleIdKey"],"sources":["../../../src/utils/MetaDataUtil/MetaDataUtil.ts"],"sourcesContent":["import type {\n MetadataParseResult,\n MetadataRecord,\n} from '../../models/metadata.models';\n\nexport class MetaDataUtil {\n /*\n Compute the best matching metadata column for the given FASTA sequence IDs.\n /\n public static findBestMatchingColumn = (\n columns: string[],\n recordsByColumn: Record<string, Record<string, MetadataRecord>>,\n fastaIds: string[],\n ): { bestColumn: null \| string; matchCounts: Record<string, number> } => {\n const matchCounts = MetaDataUtil.getMatchCounts(columns, recordsByColumn, fastaIds);\n let bestColumn: null \| string = null;\n let maxMatches = -1;\n\n if (!columns \|\| !recordsByColumn \|\| !fastaIds \|\| fastaIds.length === 0) {\n return { bestColumn: null, matchCounts: {} };\n }\n\n const prioritizedKeys = [\n 'displayname',\n 'accessionversion',\n 'accession',\n 'sampleid',\n 'sample_id',\n 'id',\n 'strain',\n 'isolate',\n 'submissionid',\n 'name',\n ];\n\n for (const col of columns) {\n const colDict = recordsByColumn[col];\n if (!colDict) {\n continue;\n }\n\n const count = matchCounts[col];\n\n if (count > maxMatches) {\n maxMatches = count;\n bestColumn = col;\n } else if (count === maxMatches && count > 0 && bestColumn) {\n // Tie-breaker: prioritize standard ID column names\n const currentPriority = prioritizedKeys.indexOf(bestColumn.toLowerCase());\n const newPriority = prioritizedKeys.indexOf(col.toLowerCase());\n if (newPriority !== -1 && (currentPriority === -1 \|\| newPriority < currentPriority)) {\n bestColumn = col;\n }\n }\n }\n\n if (maxMatches <= 0) {\n // If no matches, default to highest priority known ID column if available\n for (const pKey of prioritizedKeys) {\n const found = columns.find((c) => c.toLowerCase() === pKey);\n if (found) {\n bestColumn = found;\n break;\n }\n }\n if (!bestColumn && columns.length > 0) {\n bestColumn = columns[0];\n }\n }\n\n return { bestColumn, matchCounts };\n };\n\n public static getHighlightedIds(query: string, allAccessions: string[], metadataRecords: MetadataRecord[], matchKeyField: null \| string = null): string[] {\n const trimmed = query.trim().toLowerCase();\n if (!trimmed) {\n return [];\n }\n\n const matched = new Set<string>();\n\n // Check accession names / fasta IDs\n allAccessions.forEach((acc) => {\n if (acc.toLowerCase().includes(trimmed)) {\n matched.add(acc);\n }\n });\n\n // Check metadata records\n metadataRecords.forEach((rec) => {\n const acc =\n (matchKeyField && rec[matchKeyField]) \|\|\n rec.displayName \|\|\n rec.accessionVersion \|\|\n rec.accession \|\|\n rec.id \|\|\n rec.submissionId \|\|\n rec.SampleID;\n if (acc) {\n const matchesAnyField = Object.values(rec).some(\n (val) => typeof val === 'string' && val.toLowerCase().includes(trimmed),\n );\n if (matchesAnyField) {\n matched.add(acc);\n }\n }\n });\n\n return Array.from(matched);\n }\n /\n Count FASTA sequence ID matches for each metadata column.\n /\n public static getMatchCounts = (\n columns: string[],\n recordsByColumn: Record<string, Record<string, MetadataRecord>>,\n fastaIds: string[],\n ): Record<string, number> => {\n const matchCounts: Record<string, number> = {};\n\n if (!columns \|\| !recordsByColumn \|\| !fastaIds \|\| fastaIds.length === 0) {\n return matchCounts;\n }\n\n for (const col of columns) {\n const colDict = recordsByColumn[col];\n if (!colDict) {\n continue;\n }\n\n let count = 0;\n for (const id of fastaIds) {\n if (colDict[id]) {\n count++;\n }\n }\n matchCounts[col] = count;\n }\n\n return matchCounts;\n };\n\n /\n Retrieve metadata record for a given sample/node name with fallback strategies.\n */\n public static readonly getRecordForSample = (\n metadata: MetadataParseResult \| null \| undefined,\n sampleId: string,\n matchKeyField?: null \| string,\n ): MetadataRecord \| undefined => {\n if (!metadata \|\| !sampleId) {\n return undefined;\n }\n\n // 1. If matchKeyField is specified and exists, check it first\n if (matchKeyField && metadata.recordsByColumn?.[matchKeyField]) {\n const rec = metadata.recordsByColumn[matchKeyField][sampleId];\n if (rec) {\n return rec;\n }\n }\n\n // 2. Check displayName\n if (metadata.recordsByColumn?.['displayName']?.[sampleId]) {\n return metadata.recordsByColumn['displayName'][sampleId];\n }\n\n // 3. Check accessionVersion\n if (metadata.recordsByColumn?.['accessionVersion']?.[sampleId]) {\n return metadata.recordsByColumn['accessionVersion'][sampleId];\n }\n\n // 4. Check accession maps\n if (metadata.recordsByAccession[sampleId]) {\n return metadata.recordsByAccession[sampleId];\n }\n if (metadata.recordsBySampleId[sampleId]) {\n return metadata.recordsBySampleId[sampleId];\n }\n\n // 5. Broad search through all indexed columns\n if (metadata.recordsByColumn) {\n for (const col of Object.keys(metadata.recordsByColumn)) {\n const match = metadata.recordsByColumn[col][sampleId];\n if (match) {\n return match;\n }\n }\n }\n\n return undefined;\n };\n\n public static parseTsv = (content: string): MetadataParseResult => {\n if (!content?.trim()) {\n return {\n columns: [],\n error: 'Empty metadata content provided.',\n records: [],\n recordsByAccession: {},\n recordsByColumn: {},\n recordsBySampleId: {},\n };\n }\n\n const lines = content.trim().split('\\n');\n if (lines.length < 2) {\n return {\n columns: [],\n error: 'Metadata file must contain at least a header row and one data row.',\n records: [],\n recordsByAccession: {},\n recordsByColumn: {},\n recordsBySampleId: {},\n };\n }\n\n // Parse header row\n const headerLine = lines[0].trim();\n let delimiter = '\\t';\n if (!headerLine.includes('\\t') && headerLine.includes(',')) {\n delimiter = ',';\n }\n const columns = headerLine\n .split(delimiter)\n .map((col) => col.trim().replace(/^[\"']\|[\"']$/g, ''))\n .filter((c) => c.length > 0);\n\n const records: MetadataRecord[] = [];\n const recordsByAccession: Record<string, MetadataRecord> = {};\n const recordsBySampleId: Record<string, MetadataRecord> = {};\n const recordsByColumn: Record<string, Record<string, MetadataRecord>> = {};\n\n columns.forEach((col) => {\n recordsByColumn[col] = {};\n });\n\n for (let i = 1; i < lines.length; i++) {\n const line = lines[i].trim();\n if (!line) {\n continue;\n }\n\n const values = line.split(delimiter).map((val) => val.trim().replace(/^[\"']\|[\"']$/g, ''));\n const record: MetadataRecord = {};\n\n columns.forEach((col, colIdx) => {\n const val = values[colIdx] ?? '';\n record[col] = val;\n if (val) {\n recordsByColumn[col][val] = record;\n }\n });\n\n records.push(record);\n\n // Index by potential ID keys\n const accessionKey =\n record.displayName \|\|\n record.accessionVersion \|\|\n record.accession \|\|\n record.id \|\|\n record.submissionId \|\|\n record.strain \|\|\n record.isolate \|\|\n record.name;\n\n if (accessionKey) {\n recordsByAccession[accessionKey] = record;\n }\n\n const sampleIdKey =\n record.SampleID \|\|\n record.sampleId \|\|\n record.sample_id \|\|\n record.specimenCollectorSampleId \|\|\n record.id;\n\n if (sampleIdKey) {\n recordsBySampleId[sampleIdKey] = record;\n }\n }\n\n return {\n columns,\n records,\n recordsByAccession,\n recordsByColumn,\n recordsBySampleId,\n };\n };\n}\n"],"mappings":";AAKA,IAAaA,IAAb,MAAaA,EAAa;CAIxB,OAAc,0BACZ,GACA,GACA,MACuE;EACvE,IAAMC,IAAcD,EAAa,eAAeE,GAASC,GAAiBC,CAAQ,GAC9EC,IAA4B,MAC5BC,IAAa;EAEjB,IAAI,CAACJ,KAAW,CAACC,KAAmB,CAACC,KAAYA,EAAS,WAAW,GACnE,OAAO;GAAE,YAAY;GAAM,aAAa,CAAC;EAAE;EAG7C,IAAMG,IAAkB;GACtB;GACA;GACA;GACA;GACA;GACA;GACA;GACA;GACA;GACA;EACF;EAEA,KAAK,IAAMC,KAAON,GAAS;GAEzB,IAAI,CADYC,EAAgBK,IAE9B;GAGF,IAAMC,IAAQR,EAAYO;GAE1B,IAAIC,IAAQH,GAEV,AADA,IAAaG,GACb,IAAaD;QACR,IAAIC,MAAUH,KAAcG,IAAQ,KAAKJ,GAAY;IAE1D,IAAMK,IAAkBH,EAAgB,QAAQF,EAAW,YAAY,CAAC,GAClEM,IAAcJ,EAAgB,QAAQC,EAAI,YAAY,CAAC;IAC7D,AAAIG,MAAgB,OAAOD,MAAoB,MAAMC,IAAcD,OACjE,IAAaF;GAEjB;EACF;EAEA,IAAIF,KAAc,GAAG;GAEnB,KAAK,IAAMM,KAAQL,GAAiB;IAClC,IAAMM,IAAQX,EAAQ,MAAM,MAAMY,EAAE,YAAY,MAAMF,CAAI;IAC1D,IAAIC,GAAO;KACT,IAAaA;KACb;IACF;GACF;GACA,AAAI,CAACR,KAAcH,EAAQ,SAAS,MAClC,IAAaA,EAAQ;EAEzB;EAEA,OAAO;GAAE;GAAY;EAAY;CACnC;CAEA,OAAc,kBAAkB,GAAe,GAAyB,GAAmC,IAA+B,MAAgB;EACxJ,IAAMa,IAAUC,EAAM,KAAK,CAAC,CAAC,YAAY;EACzC,IAAI,CAACD,GACH,OAAO,CAAC;EAGV,IAAME,oBAAU,IAAI,IAAY;EA6BhC,OA1BAC,EAAc,SAAS,MAAQ;GAC7B,AAAIC,EAAI,YAAY,CAAC,CAAC,SAASJ,CAAO,KACpCE,EAAQ,IAAIE,CAAG;EAEnB,CAAC,GAGDC,EAAgB,SAAS,MAAQ;GAC/B,IAAMD,IACHE,KAAiBC,EAAID,MACtBC,EAAI,eACJA,EAAI,oBACJA,EAAI,aACJA,EAAI,MACJA,EAAI,gBACJA,EAAI;GACN,AAAIH,KACsB,OAAO,OAAOG,CAAG,CAAC,CAAC,MACxC,MAAQ,OAAOC,KAAQ,YAAYA,EAAI,YAAY,CAAC,CAAC,SAASR,CAAO,CAEpE,KACFE,EAAQ,IAAIE,CAAG;EAGrB,CAAC,GAEM,MAAM,KAAKF,CAAO;CAC3B;CAIA,OAAc,kBACZ,GACA,GACA,MAC2B;EAC3B,IAAMhB,IAAsC,CAAC;EAE7C,IAAI,CAACC,KAAW,CAACC,KAAmB,CAACC,KAAYA,EAAS,WAAW,GACnE,OAAOH;EAGT,KAAK,IAAMO,KAAON,GAAS;GACzB,IAAMsB,IAAUrB,EAAgBK;GAChC,IAAI,CAACgB,GACH;GAGF,IAAIf,IAAQ;GACZ,KAAK,IAAMgB,KAAMrB,GACf,AAAIoB,EAAQC,MACV;GAGJ,EAAYjB,KAAOC;EACrB;EAEA,OAAOR;CACT;CAKA,OAAuB,sBACrB,GACA,GACA,MAC+B;EAC/B,IAAKyB,KAAaC,GAKlB;OAAIN,KAAiBK,EAAS,kBAAkBL,IAAgB;IAC9D,IAAMC,IAAMI,EAAS,gBAAgBL,EAAc,CAACM;IACpD,IAAIL,GACF,OAAOA;GAEX;GAGA,IAAII,EAAS,iBAAkBE,cAAiBD,IAC9C,OAAOD,EAAS,gBAAgBE,YAAeD;GAIjD,IAAID,EAAS,iBAAkBG,mBAAsBF,IACnD,OAAOD,EAAS,gBAAgBG,iBAAoBF;GAItD,IAAID,EAAS,mBAAmBC,IAC9B,OAAOD,EAAS,mBAAmBC;GAErC,IAAID,EAAS,kBAAkBC,IAC7B,OAAOD,EAAS,kBAAkBC;GAIpC,IAAID,EAAS,iBACX,KAAK,IAAMlB,KAAO,OAAO,KAAKkB,EAAS,eAAe,GAAG;IACvD,IAAMI,IAAQJ,EAAS,gBAAgBlB,EAAI,CAACmB;IAC5C,IAAIG,GACF,OAAOA;GAEX;EA3BF;CA+BF;CAEA,OAAc,YAAY,MAAyC;EACjE,IAAI,CAACC,GAAS,KAAK,GACjB,OAAO;GACL,SAAS,CAAC;GACV,OAAO;GACP,SAAS,CAAC;GACV,oBAAoB,CAAC;GACrB,iBAAiB,CAAC;GAClB,mBAAmB,CAAC;EACtB;EAGF,IAAMC,IAAQD,EAAQ,KAAK,CAAC,CAAC,MAAM,IAAI;EACvC,IAAIC,EAAM,SAAS,GACjB,OAAO;GACL,SAAS,CAAC;GACV,OAAO;GACP,SAAS,CAAC;GACV,oBAAoB,CAAC;GACrB,iBAAiB,CAAC;GAClB,mBAAmB,CAAC;EACtB;EAIF,IAAMC,IAAaD,EAAM,EAAE,CAAC,KAAK,GAC7BE,IAAY;EAChB,AAAI,CAACD,EAAW,SAAS,GAAI,KAAKA,EAAW,SAAS,GAAG,MACvD,IAAY;EAEd,IAAM/B,IAAU+B,EACb,MAAMC,CAAS,CAAC,CAChB,KAAK,MAAQ1B,EAAI,KAAK,CAAC,CAAC,QAAQ,gBAAgB,EAAE,CAAC,CAAC,CACpD,QAAQ,MAAMM,EAAE,SAAS,CAAC,GAEvBqB,IAA4B,CAAC,GAC7BC,IAAqD,CAAC,GACtDC,IAAoD,CAAC,GACrDlC,IAAkE,CAAC;EAEzE,EAAQ,SAAS,MAAQ;GACvB,EAAgBK,KAAO,CAAC;EAC1B,CAAC;EAED,KAAK,IAAI8B,IAAI,GAAGA,IAAIN,EAAM,QAAQ,KAAK;GACrC,IAAMO,IAAOP,EAAMM,EAAE,CAAC,KAAK;GAC3B,IAAI,CAACC,GACH;GAGF,IAAMC,IAASD,EAAK,MAAML,CAAS,CAAC,CAAC,KAAK,MAAQX,EAAI,KAAK,CAAC,CAAC,QAAQ,gBAAgB,EAAE,CAAC,GAClFkB,IAAyB,CAAC;GAUhC,AARAvC,EAAQ,SAAS,GAAK,MAAW;IAC/B,IAAMqB,IAAMiB,EAAOE,MAAW;IAE9B,AADA,EAAOlC,KAAOe,GACVA,MACF,EAAgBf,EAAI,CAACe,KAAOkB;GAEhC,CAAC,GAEDN,EAAQ,KAAKM,CAAM;GAGnB,IAAME,IACJF,EAAO,eACPA,EAAO,oBACPA,EAAO,aACPA,EAAO,MACPA,EAAO,gBACPA,EAAO,UACPA,EAAO,WACPA,EAAO;GAET,AAAIE,MACF,EAAmBA,KAAgBF;GAGrC,IAAMG,IACJH,EAAO,YACPA,EAAO,YACPA,EAAO,aACPA,EAAO,6BACPA,EAAO;GAET,AAAIG,MACF,EAAkBA,KAAeH;EAErC;EAEA,OAAO;GACL;GACA;GACA;GACA;GACA;EACF;CACF;AACF"}
1	+ {"version":3,"file":"index.js","names":["MetaDataUtil","matchCounts","columns","recordsByColumn","fastaIds","bestColumn","maxMatches","prioritizedKeys","col","count","currentPriority","newPriority","pKey","found","c","metaData","trimmed","query","matched","allAccessions","acc","metadataRecords","matchKeyField","rec","val","colDict","id","metadata","sampleId","\"displayName\"","\"accessionVersion\"","match","content","lines","headerLine","delimiter","records","recordsByAccession","recordsBySampleId","i","line","values","record","colIdx","accessionKey","sampleIdKey"],"sources":["../../../src/utils/MetaDataUtil/MetaDataUtil.ts"],"sourcesContent":["import type {\n MetadataParseResult,\n MetadataRecord,\n} from '../../models/metadata.models';\n\nexport class MetaDataUtil {\n /*\n Compute the best matching metadata column for the given FASTA sequence IDs.\n /\n public static findBestMatchingColumn = (\n columns: string[],\n recordsByColumn: Record<string, Record<string, MetadataRecord>>,\n fastaIds: string[],\n ): { bestColumn: null \| string; matchCounts: Record<string, number> } => {\n const matchCounts = MetaDataUtil.getMatchCounts(columns, recordsByColumn, fastaIds);\n let bestColumn: null \| string = null;\n let maxMatches = -1;\n\n if (!columns \|\| !recordsByColumn \|\| !fastaIds \|\| fastaIds.length === 0) {\n return { bestColumn: null, matchCounts: {} };\n }\n\n const prioritizedKeys = [\n 'displayname',\n 'accessionversion',\n 'accession',\n 'sampleid',\n 'sample_id',\n 'id',\n 'strain',\n 'isolate',\n 'submissionid',\n 'name',\n ];\n\n for (const col of columns) {\n const colDict = recordsByColumn[col];\n if (!colDict) {\n continue;\n }\n\n const count = matchCounts[col];\n\n if (count > maxMatches) {\n maxMatches = count;\n bestColumn = col;\n } else if (count === maxMatches && count > 0 && bestColumn) {\n // Tie-breaker: prioritize standard ID column names\n const currentPriority = prioritizedKeys.indexOf(bestColumn.toLowerCase());\n const newPriority = prioritizedKeys.indexOf(col.toLowerCase());\n if (newPriority !== -1 && (currentPriority === -1 \|\| newPriority < currentPriority)) {\n bestColumn = col;\n }\n }\n }\n\n if (maxMatches <= 0) {\n // If no matches, default to highest priority known ID column if available\n for (const pKey of prioritizedKeys) {\n const found = columns.find((c) => c.toLowerCase() === pKey);\n if (found) {\n bestColumn = found;\n break;\n }\n }\n if (!bestColumn && columns.length > 0) {\n bestColumn = columns[0];\n }\n }\n\n return { bestColumn, matchCounts };\n };\n\n public static getGroupId(metaData: MetadataParseResult): string {\n if (!metaData?.columns?.includes('groupId')) {\n return '';\n }\n\n return Object.keys(metaData.recordsByColumn.groupId)?.[0] ?? '';\n }\n\n public static getHighlightedIds(query: string, allAccessions: string[], metadataRecords: MetadataRecord[], matchKeyField: null \| string = null): string[] {\n const trimmed = query.trim().toLowerCase();\n if (!trimmed) {\n return [];\n }\n\n const matched = new Set<string>();\n\n // Check accession names / fasta IDs\n allAccessions.forEach((acc) => {\n if (acc.toLowerCase().includes(trimmed)) {\n matched.add(acc);\n }\n });\n\n // Check metadata records\n metadataRecords.forEach((rec) => {\n const acc =\n (matchKeyField && rec[matchKeyField]) \|\|\n rec.displayName \|\|\n rec.accessionVersion \|\|\n rec.accession \|\|\n rec.id \|\|\n rec.submissionId \|\|\n rec.SampleID;\n if (acc) {\n const matchesAnyField = Object.values(rec).some(\n (val) => typeof val === 'string' && val.toLowerCase().includes(trimmed),\n );\n if (matchesAnyField) {\n matched.add(acc);\n }\n }\n });\n\n return Array.from(matched);\n }\n\n /\n Count FASTA sequence ID matches for each metadata column.\n /\n public static getMatchCounts = (\n columns: string[],\n recordsByColumn: Record<string, Record<string, MetadataRecord>>,\n fastaIds: string[],\n ): Record<string, number> => {\n const matchCounts: Record<string, number> = {};\n\n if (!columns \|\| !recordsByColumn \|\| !fastaIds \|\| fastaIds.length === 0) {\n return matchCounts;\n }\n\n for (const col of columns) {\n const colDict = recordsByColumn[col];\n if (!colDict) {\n continue;\n }\n\n let count = 0;\n for (const id of fastaIds) {\n if (colDict[id]) {\n count++;\n }\n }\n matchCounts[col] = count;\n }\n\n return matchCounts;\n };\n\n /\n Retrieve metadata record for a given sample/node name with fallback strategies.\n */\n public static readonly getRecordForSample = (\n metadata: MetadataParseResult \| null \| undefined,\n sampleId: string,\n matchKeyField?: null \| string,\n ): MetadataRecord \| undefined => {\n if (!metadata \|\| !sampleId) {\n return undefined;\n }\n\n // 1. If matchKeyField is specified and exists, check it first\n if (matchKeyField && metadata.recordsByColumn?.[matchKeyField]) {\n const rec = metadata.recordsByColumn[matchKeyField][sampleId];\n if (rec) {\n return rec;\n }\n }\n\n // 2. Check displayName\n if (metadata.recordsByColumn?.['displayName']?.[sampleId]) {\n return metadata.recordsByColumn['displayName'][sampleId];\n }\n\n // 3. Check accessionVersion\n if (metadata.recordsByColumn?.['accessionVersion']?.[sampleId]) {\n return metadata.recordsByColumn['accessionVersion'][sampleId];\n }\n\n // 4. Check accession maps\n if (metadata.recordsByAccession[sampleId]) {\n return metadata.recordsByAccession[sampleId];\n }\n if (metadata.recordsBySampleId[sampleId]) {\n return metadata.recordsBySampleId[sampleId];\n }\n\n // 5. Broad search through all indexed columns\n if (metadata.recordsByColumn) {\n for (const col of Object.keys(metadata.recordsByColumn)) {\n const match = metadata.recordsByColumn[col][sampleId];\n if (match) {\n return match;\n }\n }\n }\n\n return undefined;\n };\n\n public static parseTsv(content: string): MetadataParseResult {\n if (!content?.trim()) {\n return {\n columns: [],\n error: 'Empty metadata content provided.',\n records: [],\n recordsByAccession: {},\n recordsByColumn: {},\n recordsBySampleId: {},\n };\n }\n\n const lines = content.trim().split('\\n');\n if (lines.length < 2) {\n return {\n columns: [],\n error: 'Metadata file must contain at least a header row and one data row.',\n records: [],\n recordsByAccession: {},\n recordsByColumn: {},\n recordsBySampleId: {},\n };\n }\n\n // Parse header row\n const headerLine = lines[0].trim();\n let delimiter = '\\t';\n if (!headerLine.includes('\\t') && headerLine.includes(',')) {\n delimiter = ',';\n }\n const columns = headerLine\n .split(delimiter)\n .map((col) => col.trim().replace(/^[\"']\|[\"']$/g, ''))\n .filter((c) => c.length > 0);\n\n const records: MetadataRecord[] = [];\n const recordsByAccession: Record<string, MetadataRecord> = {};\n const recordsBySampleId: Record<string, MetadataRecord> = {};\n const recordsByColumn: Record<string, Record<string, MetadataRecord>> = {};\n\n columns.forEach((col) => {\n recordsByColumn[col] = {};\n });\n\n for (let i = 1; i < lines.length; i++) {\n const line = lines[i].trim();\n if (!line) {\n continue;\n }\n\n const values = line.split(delimiter).map((val) => val.trim().replace(/^[\"']\|[\"']$/g, ''));\n const record: MetadataRecord = {};\n\n columns.forEach((col, colIdx) => {\n const val = values[colIdx] ?? '';\n record[col] = val;\n if (val) {\n recordsByColumn[col][val] = record;\n }\n });\n\n records.push(record);\n\n // Index by potential ID keys\n const accessionKey =\n record.displayName \|\|\n record.accessionVersion \|\|\n record.accession \|\|\n record.id \|\|\n record.submissionId \|\|\n record.strain \|\|\n record.isolate \|\|\n record.name;\n\n if (accessionKey) {\n recordsByAccession[accessionKey] = record;\n }\n\n const sampleIdKey =\n record.SampleID \|\|\n record.sampleId \|\|\n record.sample_id \|\|\n record.specimenCollectorSampleId \|\|\n record.id;\n\n if (sampleIdKey) {\n recordsBySampleId[sampleIdKey] = record;\n }\n }\n\n return {\n columns,\n records,\n recordsByAccession,\n recordsByColumn,\n recordsBySampleId,\n };\n }\n}\n"],"mappings":";AAKA,IAAaA,IAAb,MAAaA,EAAa;CAIxB,OAAc,0BACZ,GACA,GACA,MACuE;EACvE,IAAMC,IAAcD,EAAa,eAAeE,GAASC,GAAiBC,CAAQ,GAC9EC,IAA4B,MAC5BC,IAAa;EAEjB,IAAI,CAACJ,KAAW,CAACC,KAAmB,CAACC,KAAYA,EAAS,WAAW,GACnE,OAAO;GAAE,YAAY;GAAM,aAAa,CAAC;EAAE;EAG7C,IAAMG,IAAkB;GACtB;GACA;GACA;GACA;GACA;GACA;GACA;GACA;GACA;GACA;EACF;EAEA,KAAK,IAAMC,KAAON,GAAS;GAEzB,IAAI,CADYC,EAAgBK,IAE9B;GAGF,IAAMC,IAAQR,EAAYO;GAE1B,IAAIC,IAAQH,GAEV,AADA,IAAaG,GACb,IAAaD;QACR,IAAIC,MAAUH,KAAcG,IAAQ,KAAKJ,GAAY;IAE1D,IAAMK,IAAkBH,EAAgB,QAAQF,EAAW,YAAY,CAAC,GAClEM,IAAcJ,EAAgB,QAAQC,EAAI,YAAY,CAAC;IAC7D,AAAIG,MAAgB,OAAOD,MAAoB,MAAMC,IAAcD,OACjE,IAAaF;GAEjB;EACF;EAEA,IAAIF,KAAc,GAAG;GAEnB,KAAK,IAAMM,KAAQL,GAAiB;IAClC,IAAMM,IAAQX,EAAQ,MAAM,MAAMY,EAAE,YAAY,MAAMF,CAAI;IAC1D,IAAIC,GAAO;KACT,IAAaA;KACb;IACF;GACF;GACA,AAAI,CAACR,KAAcH,EAAQ,SAAS,MAClC,IAAaA,EAAQ;EAEzB;EAEA,OAAO;GAAE;GAAY;EAAY;CACnC;CAEA,OAAc,WAAW,GAAuC;EAK9D,OAJKa,GAAU,SAAS,SAAS,SAAS,IAInC,OAAO,KAAKA,EAAS,gBAAgB,OAAO,CAAC,GAAG,MAAM,KAHpD;CAIX;CAEA,OAAc,kBAAkB,GAAe,GAAyB,GAAmC,IAA+B,MAAgB;EACxJ,IAAMC,IAAUC,EAAM,KAAK,CAAC,CAAC,YAAY;EACzC,IAAI,CAACD,GACH,OAAO,CAAC;EAGV,IAAME,oBAAU,IAAI,IAAY;EA6BhC,OA1BAC,EAAc,SAAS,MAAQ;GAC7B,AAAIC,EAAI,YAAY,CAAC,CAAC,SAASJ,CAAO,KACpCE,EAAQ,IAAIE,CAAG;EAEnB,CAAC,GAGDC,EAAgB,SAAS,MAAQ;GAC/B,IAAMD,IACHE,KAAiBC,EAAID,MACtBC,EAAI,eACJA,EAAI,oBACJA,EAAI,aACJA,EAAI,MACJA,EAAI,gBACJA,EAAI;GACN,AAAIH,KACsB,OAAO,OAAOG,CAAG,CAAC,CAAC,MACxC,MAAQ,OAAOC,KAAQ,YAAYA,EAAI,YAAY,CAAC,CAAC,SAASR,CAAO,CAEpE,KACFE,EAAQ,IAAIE,CAAG;EAGrB,CAAC,GAEM,MAAM,KAAKF,CAAO;CAC3B;CAKA,OAAc,kBACZ,GACA,GACA,MAC2B;EAC3B,IAAMjB,IAAsC,CAAC;EAE7C,IAAI,CAACC,KAAW,CAACC,KAAmB,CAACC,KAAYA,EAAS,WAAW,GACnE,OAAOH;EAGT,KAAK,IAAMO,KAAON,GAAS;GACzB,IAAMuB,IAAUtB,EAAgBK;GAChC,IAAI,CAACiB,GACH;GAGF,IAAIhB,IAAQ;GACZ,KAAK,IAAMiB,KAAMtB,GACf,AAAIqB,EAAQC,MACV;GAGJ,EAAYlB,KAAOC;EACrB;EAEA,OAAOR;CACT;CAKA,OAAuB,sBACrB,GACA,GACA,MAC+B;EAC/B,IAAK0B,KAAaC,GAKlB;OAAIN,KAAiBK,EAAS,kBAAkBL,IAAgB;IAC9D,IAAMC,IAAMI,EAAS,gBAAgBL,EAAc,CAACM;IACpD,IAAIL,GACF,OAAOA;GAEX;GAGA,IAAII,EAAS,iBAAkBE,cAAiBD,IAC9C,OAAOD,EAAS,gBAAgBE,YAAeD;GAIjD,IAAID,EAAS,iBAAkBG,mBAAsBF,IACnD,OAAOD,EAAS,gBAAgBG,iBAAoBF;GAItD,IAAID,EAAS,mBAAmBC,IAC9B,OAAOD,EAAS,mBAAmBC;GAErC,IAAID,EAAS,kBAAkBC,IAC7B,OAAOD,EAAS,kBAAkBC;GAIpC,IAAID,EAAS,iBACX,KAAK,IAAMnB,KAAO,OAAO,KAAKmB,EAAS,eAAe,GAAG;IACvD,IAAMI,IAAQJ,EAAS,gBAAgBnB,EAAI,CAACoB;IAC5C,IAAIG,GACF,OAAOA;GAEX;EA3BF;CA+BF;CAEA,OAAc,SAAS,GAAsC;EAC3D,IAAI,CAACC,GAAS,KAAK,GACjB,OAAO;GACL,SAAS,CAAC;GACV,OAAO;GACP,SAAS,CAAC;GACV,oBAAoB,CAAC;GACrB,iBAAiB,CAAC;GAClB,mBAAmB,CAAC;EACtB;EAGF,IAAMC,IAAQD,EAAQ,KAAK,CAAC,CAAC,MAAM,IAAI;EACvC,IAAIC,EAAM,SAAS,GACjB,OAAO;GACL,SAAS,CAAC;GACV,OAAO;GACP,SAAS,CAAC;GACV,oBAAoB,CAAC;GACrB,iBAAiB,CAAC;GAClB,mBAAmB,CAAC;EACtB;EAIF,IAAMC,IAAaD,EAAM,EAAE,CAAC,KAAK,GAC7BE,IAAY;EAChB,AAAI,CAACD,EAAW,SAAS,GAAI,KAAKA,EAAW,SAAS,GAAG,MACvD,IAAY;EAEd,IAAMhC,IAAUgC,EACb,MAAMC,CAAS,CAAC,CAChB,KAAK,MAAQ3B,EAAI,KAAK,CAAC,CAAC,QAAQ,gBAAgB,EAAE,CAAC,CAAC,CACpD,QAAQ,MAAMM,EAAE,SAAS,CAAC,GAEvBsB,IAA4B,CAAC,GAC7BC,IAAqD,CAAC,GACtDC,IAAoD,CAAC,GACrDnC,IAAkE,CAAC;EAEzE,EAAQ,SAAS,MAAQ;GACvB,EAAgBK,KAAO,CAAC;EAC1B,CAAC;EAED,KAAK,IAAI+B,IAAI,GAAGA,IAAIN,EAAM,QAAQ,KAAK;GACrC,IAAMO,IAAOP,EAAMM,EAAE,CAAC,KAAK;GAC3B,IAAI,CAACC,GACH;GAGF,IAAMC,IAASD,EAAK,MAAML,CAAS,CAAC,CAAC,KAAK,MAAQX,EAAI,KAAK,CAAC,CAAC,QAAQ,gBAAgB,EAAE,CAAC,GAClFkB,IAAyB,CAAC;GAUhC,AARAxC,EAAQ,SAAS,GAAK,MAAW;IAC/B,IAAMsB,IAAMiB,EAAOE,MAAW;IAE9B,AADA,EAAOnC,KAAOgB,GACVA,MACF,EAAgBhB,EAAI,CAACgB,KAAOkB;GAEhC,CAAC,GAEDN,EAAQ,KAAKM,CAAM;GAGnB,IAAME,IACJF,EAAO,eACPA,EAAO,oBACPA,EAAO,aACPA,EAAO,MACPA,EAAO,gBACPA,EAAO,UACPA,EAAO,WACPA,EAAO;GAET,AAAIE,MACF,EAAmBA,KAAgBF;GAGrC,IAAMG,IACJH,EAAO,YACPA,EAAO,YACPA,EAAO,aACPA,EAAO,6BACPA,EAAO;GAET,AAAIG,MACF,EAAkBA,KAAeH;EAErC;EAEA,OAAO;GACL;GACA;GACA;GACA;GACA;EACF;CACF;AACF"}

package/dist/utils/UrlUtil/UrlUtil.d.ts CHANGED Viewed

@@ -2,5 +2,5 @@ export declare class UrlUtil {
     static clearSearchParams(): void;
     static fastaLabelFromUrl(url: string): string;
     static getBaseURLWithPath(): string;
-    static validateFastaUrl(url: string): string;
+    static isValidResourceUrl(url: string): boolean;
 }

package/dist/utils/UrlUtil/index.js CHANGED Viewed

@@ -4,7 +4,7 @@ import { WindowService as t } from "@gen-epix/ui-core/classes/services/WindowSer
 var n = class {
 	static clearSearchParams() {
 		let n = new URL(e.resolve(t).window.location.href);
-		n.search = "", e.resolve(t).window.history.replaceState(null, "", n.toString());
+		n.search = "", e.resolve(t).window.history.replaceState(null, "", n.toString()), e.resolve(t).window.dispatchEvent(new Event("loculus:urlparamschange"));
 	}
 	static fastaLabelFromUrl(e) {
 		try {
@@ -16,17 +16,16 @@ var n = class {
 	}
 	static getBaseURLWithPath() {
 		let n = new URL(e.resolve(t).window.location.href);
-		return `${n.protocol}//${n.host}/${n.pathname.split("/").filter(Boolean).shift()}`;
+		return n.pathname ? `${n.protocol}//${n.host}/${n.pathname.split("/").filter(Boolean).shift()}` : `${n.protocol}//${n.host}`;
 	}
-	static validateFastaUrl(e) {
+	static isValidResourceUrl(e) {
 		let t;
 		try {
 			t = new URL(e.trim());
 		} catch {
-			throw Error("Enter a valid FASTA URL.");
+			return !1;
 		}
-		if (t.protocol !== "http:" && t.protocol !== "https:") throw Error("FASTA URLs must use HTTP or HTTPS.");
-		return t.href;
+		return t.protocol === "http:" || t.protocol === "https:";
 	}
 };
 export { n as UrlUtil };

package/dist/utils/UrlUtil/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","names":["UrlUtil","url","container","WindowService","urlObject","segment"],"sources":["../../../src/utils/UrlUtil/UrlUtil.ts"],"sourcesContent":["import { container } from 'tsyringe';\nimport { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\n\n\nexport class UrlUtil {\n public static clearSearchParams(): void {\n const url = new URL(container.resolve(WindowService).window.location.href);\n url.search = '';\n container.resolve(WindowService).window.history.replaceState(null, '', url.toString());\n }\n public static fastaLabelFromUrl(url: string): string {\n try {\n const urlObject = new URL(url);\n const segment = urlObject.pathname.split('/').filter(Boolean).pop();\n if (segment) {\n return decodeURIComponent(segment);\n }\n return `${urlObject.hostname}.fasta`;\n } catch {\n return 'remote-alignment.fasta';\n }\n }\n\n public static getBaseURLWithPath(): string {\n const url = new URL(container.resolve(WindowService).window.location.href);\n return `${url.protocol}//${url.host}/${url.pathname.split('/').filter(Boolean).shift()}`;\n }\n\n public static ~~validateFastaUrl~~(url: string): ~~string~~ {\n let urlObject: URL;\n try {\n urlObject = new URL(url.trim());\n } catch {\n ~~throw~~ ~~new Error('Enter a valid FASTA URL.')~~;\n }\n if (urlObject.protocol !== 'http:' && urlObject.protocol !== 'https:') {\n ~~throw~~ ~~new Error('FASTA URLs must use HTTP or HTTPS.')~~;\n }\n return ~~urlObject.href~~;\n }\n}\n"],"mappings":";;;AAIA,IAAaA,IAAb,MAAqB;CACnB,OAAc,oBAA0B;EACtC,IAAMC,IAAM,IAAI,IAAIC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,SAAS,IAAI;~~EAEzE~~,~~AADA~~,EAAI,SAAS,IACbD,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,QAAQ,aAAa,MAAM,IAAIF,EAAI,SAAS,CAAC;~~CACvF~~;~~CACA~~,OAAc,kBAAkB,GAAqB;EACnD,IAAI;GACF,~~IAAMG~~,IAAY,IAAI,IAAIH,CAAG,GACvBI,IAAUD,EAAU,SAAS,MAAM,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,IAAI;GAIlE,OAHIC,IACK,mBAAmBA,CAAO,IAE5B,GAAGD,EAAU,SAAS;EAC/B,QAAQ;GACN,OAAO;EACT;CACF;CAEA,OAAc,qBAA6B;EACzC,IAAMH,IAAM,IAAI,IAAIC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,SAAS,IAAI;~~EACzE~~,~~OAAO~~,~~GAAGF~~,EAAI,SAAS,IAAIA,EAAI,KAAK,GAAGA,EAAI,SAAS,MAAM,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,MAAM;~~CACvF~~;~~CAEA~~,OAAc,~~iBAAiB~~,~~GAAqB~~;~~EAClD~~,IAAIG;EACJ,IAAI;GACF,IAAY,IAAI,IAAIH,EAAI,KAAK,CAAC;EAChC,QAAQ;GACN,~~MAAU,MAAM,0BAA0B~~;~~EAC5C~~;~~EACA~~,~~IAAIG~~,EAAU,aAAa,WAAWA,EAAU,aAAa~~,UAC3D,MAAU,MAAM,oCAAoC~~;~~EAEtD,OAAOA,EAAU~~;~~CACnB;~~AACF"}
1	+ {"version":3,"file":"index.js","names":["UrlUtil","url","container","WindowService","urlObject","segment"],"sources":["../../../src/utils/UrlUtil/UrlUtil.ts"],"sourcesContent":["import { container } from 'tsyringe';\nimport { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\n\n\nexport class UrlUtil {\n public static clearSearchParams(): void {\n const url = new URL(container.resolve(WindowService).window.location.href);\n url.search = '';\n container.resolve(WindowService).window.history.replaceState(null, '', url.toString());\n container.resolve(WindowService).window.dispatchEvent(new Event('loculus:urlparamschange'));\n }\n\n public static fastaLabelFromUrl(url: string): string {\n try {\n const urlObject = new URL(url);\n const segment = urlObject.pathname.split('/').filter(Boolean).pop();\n if (segment) {\n return decodeURIComponent(segment);\n }\n return `${urlObject.hostname}.fasta`;\n } catch {\n return 'remote-alignment.fasta';\n }\n }\n\n public static getBaseURLWithPath(): string {\n const url = new URL(container.resolve(WindowService).window.location.href);\n if (url.pathname) {\n return `${url.protocol}//${url.host}/${url.pathname.split('/').filter(Boolean).shift()}`;\n }\n return `${url.protocol}//${url.host}`;\n }\n\n\n public static isValidResourceUrl(url: string): boolean {\n let urlObject: URL;\n try {\n urlObject = new URL(url.trim());\n } catch {\n return false;\n }\n if (urlObject.protocol !== 'http:' && urlObject.protocol !== 'https:') {\n return false;\n }\n return true;\n }\n}\n"],"mappings":";;;AAIA,IAAaA,IAAb,MAAqB;CACnB,OAAc,oBAA0B;EACtC,IAAMC,IAAM,IAAI,IAAIC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,SAAS,IAAI;EAGzE,AAFA,EAAI,SAAS,IACbD,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,QAAQ,aAAa,MAAM,IAAIF,EAAI,SAAS,CAAC,GACrFC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,cAAc,IAAI,MAAM,yBAAyB,CAAC;CAC5F;CAEA,OAAc,kBAAkB,GAAqB;EACnD,IAAI;GACF,IAAMC,IAAY,IAAI,IAAIH,CAAG,GACvBI,IAAUD,EAAU,SAAS,MAAM,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,IAAI;GAIlE,OAHIC,IACK,mBAAmBA,CAAO,IAE5B,GAAGD,EAAU,SAAS;EAC/B,QAAQ;GACN,OAAO;EACT;CACF;CAEA,OAAc,qBAA6B;EACzC,IAAMH,IAAM,IAAI,IAAIC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,SAAS,IAAI;EAIzE,OAHIF,EAAI,WACC,GAAGA,EAAI,SAAS,IAAIA,EAAI,KAAK,GAAGA,EAAI,SAAS,MAAM,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,MAAM,MAEhF,GAAGA,EAAI,SAAS,IAAIA,EAAI;CACjC;CAGA,OAAc,mBAAmB,GAAsB;EACrD,IAAIG;EACJ,IAAI;GACF,IAAY,IAAI,IAAIH,EAAI,KAAK,CAAC;EAChC,QAAQ;GACN,OAAO;EACT;EAIA,OAHIG,EAAU,aAAa,WAAWA,EAAU,aAAa;CAI/D;AACF"}

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@rivm-loculus-tools/common-frontend",
-  "version": "0.9.0",
+  "version": "0.11.0",
   "license": "EUPL-1.2",
   "repository": {
     "type": "git",
@@ -29,7 +29,8 @@
   },
   "dependencies": {
     "lodash": "4.18.1",
-    "zustand": "5.0.16"
+    "zustand": "5.0.16",
+    "keycloak-js": "26.2.5"
   },
   "devDependencies": {
     "@emotion/cache": "11.14.0",
@@ -79,10 +80,22 @@
       "types": "./dist/classes/services/FastaDataEventBusService/index.d.ts",
       "import": "./dist/classes/services/FastaDataEventBusService/index.js"
     },
+    "./classes/services/LoculusService": {
+      "types": "./dist/classes/services/LoculusService/index.d.ts",
+      "import": "./dist/classes/services/LoculusService/index.js"
+    },
+    "./classes/services/UrlService": {
+      "types": "./dist/classes/services/UrlService/index.d.ts",
+      "import": "./dist/classes/services/UrlService/index.js"
+    },
     "./components/app/App": {
       "types": "./dist/components/app/App/index.d.ts",
       "import": "./dist/components/app/App/index.js"
     },
+    "./components/authentication/AuthenticationLoader": {
+      "types": "./dist/components/authentication/AuthenticationLoader/index.d.ts",
+      "import": "./dist/components/authentication/AuthenticationLoader/index.js"
+    },
     "./components/fasta/FastaDataImportDialog": {
       "types": "./dist/components/fasta/FastaDataImportDialog/index.d.ts",
       "import": "./dist/components/fasta/FastaDataImportDialog/index.js"
@@ -107,6 +120,10 @@
       "types": "./dist/components/fasta/FastaPageHeaderResetButton/index.d.ts",
       "import": "./dist/components/fasta/FastaPageHeaderResetButton/index.js"
     },
+    "./components/loculus/UploadToLoculusModal": {
+      "types": "./dist/components/loculus/UploadToLoculusModal/index.d.ts",
+      "import": "./dist/components/loculus/UploadToLoculusModal/index.js"
+    },
     "./components/ui/ButtonWithMenu": {
       "types": "./dist/components/ui/ButtonWithMenu/index.d.ts",
       "import": "./dist/components/ui/ButtonWithMenu/index.js"
@@ -167,6 +184,10 @@
       "types": "./dist/models/metadata.models.d.ts",
       "import": "./dist/models/metadata.models.js"
     },
+    "./models/url.models": {
+      "types": "./dist/models/url.models.d.ts",
+      "import": "./dist/models/url.models.js"
+    },
     "./pages/ErrorPage": {
       "types": "./dist/pages/ErrorPage/index.d.ts",
       "import": "./dist/pages/ErrorPage/index.js"

package/dist/_chunks/EmotionCacheService.js DELETED Viewed

@@ -1,32 +0,0 @@
-import { CONFIG_TOKEN as e } from "../constants/config.constants.js";
-import { t } from "./decorate.js";
-import { inject as n, singleton as r } from "tsyringe";
-import { WindowService as i } from "@gen-epix/ui-core/classes/services/WindowService";
-import a from "@emotion/cache";
-// \0@oxc-project+runtime@0.155.0/helpers/esm/decorateParam.js
-function o(e, t) {
-	return function(n, r) {
-		t(n, r, e);
-	};
-}
-// src/classes/services/EmotionCacheService/EmotionCacheService.ts
-var s = class {
-	emotionCache;
-	constructor(e, t) {
-		this.emotionCache = a({
-			container: t.document.head,
-			key: "loculus-tools",
-			nonce: e.nonce,
-			prepend: !!e.nonce,
-			stylisPlugins: []
-		});
-	}
-};
-s = t([
-	r(),
-	o(0, n(e)),
-	o(1, n(i))
-], s);
-export { s as t };
-//# sourceMappingURL=EmotionCacheService.js.map

package/dist/_chunks/EmotionCacheService.js.map DELETED Viewed

@@ -1 +0,0 @@

- {"version":3,"file":"EmotionCacheService.js","names":["_decorate","_decorateParam","createCache","__decorateParam","target","key","paramIndex","EmotionCacheService","windowService","config","__decorate","singleton","inject","CONFIG_TOKEN","WindowService"],"sources":["../../src/classes/services/EmotionCacheService/EmotionCacheService.ts"],"sourcesContent":["import type { EmotionCache } from '@emotion/cache';\nimport createCache from '@emotion/cache';\nimport {\n inject,\n singleton,\n} from 'tsyringe';\nimport { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\n\nimport { CONFIG_TOKEN } from '../../../constants/config.constants';\nimport type { ConfigBase } from '../../../models/config.models';\n\n\n@singleton()\nexport class EmotionCacheService {\n public readonly emotionCache: EmotionCache;\n\n public constructor(\n @inject(CONFIG_TOKEN) config: ConfigBase,\n @inject(WindowService) windowService: WindowService,\n ) {\n this.emotionCache = createCache({\n container: windowService.document.head,\n key: 'loculus-tools',\n nonce: config.nonce,\n prepend: !!config.nonce,\n stylisPlugins: [],\n });\n }\n}\n"],"mappings":";;;;;;;;;;;;AAaO,IAAMO,IAAN,MAA0B;CAC/B;CAEA,YACE,GACA,GACA;EACA,KAAK,eAAeL,EAAY;GAC9B,WAAWM,EAAc,SAAS;GAClC,KAAK;GACL,OAAOC,EAAO;GACd,SAAS,CAAC,CAACA,EAAO;GAClB,eAAe,CAAC;EAClB,CAAC;CACH;AACF;;CAhBCE,EAAU;CAKNV,EAAA,GAAAW,EAAOC,CAAY,CAAA;CACnBZ,EAAA,GAAAW,EAAOE,CAAa,CAAA"}

package/dist/_chunks/react.js DELETED Viewed

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-import e from "react";
-// ../../../node_modules/.pnpm/zustand@5.0.16_@types+react@19.3.0_react@19.3.1_use-sync-external-store@1.7.0_react@19.3.1_/node_modules/zustand/esm/react.mjs
-var t = (e) => e;
-function n(n, r = t) {
-	let i = e.useSyncExternalStore(n.subscribe, e.useCallback(() => r(n.getState()), [n, r]), () => r(n.getInitialState()));
-	return e.useDebugValue(i), i;
-}
-export { n as t };
-//# sourceMappingURL=react.js.map

package/dist/_chunks/react.js.map DELETED Viewed

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- {"version":3,"file":"react.js","names":["React","identity","arg","useStore","slice","api","selector"],"sources":["../../../../../node_modules/.pnpm/zustand@5.0.16_@types+react@19.3.0_react@19.3.1_use-sync-external-store@1.7.0_react@19.3.1_/node_modules/zustand/esm/react.mjs"],"sourcesContent":["import React from 'react';\nimport { createStore } from 'zustand/vanilla';\n\nconst identity = (arg) => arg;\nfunction useStore(api, selector = identity) {\n const slice = React.useSyncExternalStore(\n api.subscribe,\n React.useCallback(() => selector(api.getState()), [api, selector]),\n () => selector(api.getInitialState())\n );\n React.useDebugValue(slice);\n return slice;\n}\nconst createImpl = (createState) => {\n const api = createStore(createState);\n const useBoundStore = (selector) => useStore(api, selector);\n Object.assign(useBoundStore, api);\n return useBoundStore;\n};\nconst create = ((createState) => createState ? createImpl(createState) : createImpl);\n\nexport { create, useStore };\n"],"ignoreList":[0],"mappings":";;AAGA,IAAMC,KAAY,MAAQC;AAC1B,SAASC,EAAS,GAAK,IAAWF,GAAU;CAC1C,IAAMG,IAAQJ,EAAM,qBAClBK,EAAI,WACJL,EAAM,kBAAkBM,EAASD,EAAI,SAAS,CAAC,GAAG,CAACA,GAAKC,CAAQ,CAAC,SAC3DA,EAASD,EAAI,gBAAgB,CAAC,CACtC;CAEA,OADAL,EAAM,cAAcI,CAAK,GAClBA;AACT"}