@rivm-loculus-tools/common-frontend 0.8.0 → 0.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -114,7 +114,7 @@ var v = _(({ extraActions: _, onActionsChange: v, onClose: y, onDataChange: b, o
114
114
  children: [/* @__PURE__ */ l(m, { color: "primary" }), /* @__PURE__ */ l(s, {
115
115
  sx: { fontWeight: 700 },
116
116
  variant: "subtitle1",
117
- children: "1. FASTA Sequences (Required)"
117
+ children: "1. FASTA Sequences (required)"
118
118
  })]
119
119
  }),
120
120
  /* @__PURE__ */ l(s, {
@@ -213,7 +213,7 @@ var v = _(({ extraActions: _, onActionsChange: v, onClose: y, onDataChange: b, o
213
213
  children: [/* @__PURE__ */ l(h, { color: "primary" }), /* @__PURE__ */ l(s, {
214
214
  sx: { fontWeight: 700 },
215
215
  variant: "subtitle1",
216
- children: "2. TSV Metadata (Optional)"
216
+ children: "2. TSV Metadata (optional)"
217
217
  })]
218
218
  }),
219
219
  /* @__PURE__ */ l(s, {
@@ -298,7 +298,7 @@ var v = _(({ extraActions: _, onActionsChange: v, onClose: y, onDataChange: b, o
298
298
  })]
299
299
  })] });
300
300
  }, {
301
- defaultTitle: "Load Phylogenetic Data",
301
+ defaultTitle: "Load phylogenetic data",
302
302
  fullWidth: !0,
303
303
  maxWidth: "xl",
304
304
  testId: "FastaDataImportDialog"
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","names":["_Fragment","DnaIcon","TableChartIcon","FastaDataImportDialog","withDialog","fastaTab","setFastaTab","useState","fastaFile","setFastaFile","fastaUrl","setFastaUrl","fastaText","setFastaText","metadataTab","setMetadataTab","metadataFile","setMetadataFile","metadataUrl","setMetadataUrl","metadataText","setMetadataText","isLoading","setIsLoading","errorMsg","setErrorMsg","useEffect","openProps","onNoCloseButtonChange","onDisableBackdropClickChange","onCloseError","useCallback","onChangeFastaTab","value","onChangeMetadataTab","onFileSelectedFasta","file","onFileSelectedMetadata","onChangeFastaUrl","event","onChangeFastaText","onChangeMetadataUrl","onChangeMetadataText","onClickLoadData","fastaContent","res","metadataContent","onDataChange","onClose","err","onError","actions","CircularProgress","extraActions","onActionsChange","Fragment","Alert","Box","Paper","Typography","Tabs","Tab","FileDropZone","TextField"],"sources":["../../../../src/components/fasta/FastaDataImportDialog/FastaDataImportDialog.tsx"],"sourcesContent":["import type {\n ChangeEvent,\n ReactElement,\n SyntheticEvent,\n} from 'react';\nimport {\n useCallback,\n useEffect,\n useState,\n} from 'react';\nimport {\n Alert,\n Box,\n CircularProgress,\n Paper,\n Tab,\n Tabs,\n TextField,\n Typography,\n} from '@mui/material';\nimport DnaIcon from '@mui/icons-material/Biotech';\nimport TableChartIcon from '@mui/icons-material/TableChart';\nimport { FileDropZone } from '@gen-epix/ui-core-components/components/FileDropZone';\nimport type {\n WithDialogRefMethods,\n WithDialogRenderProps,\n} from '@gen-epix/ui-core-components/hoc/withDialog';\nimport { withDialog } from '@gen-epix/ui-core-components/hoc/withDialog';\nimport type { DialogAction } from '@gen-epix/ui-core-components/components/Dialog';\n\n\nenum FASTA_TAB {\n DROP = 0,\n URL = 1,\n PASTE = 2,\n}\n\nenum META_DATA_TAB {\n DROP = 0,\n URL = 1,\n PASTE = 2,\n}\n\nexport interface FastaDataImportDialogOpenProps {\n initialErrorMessage?: string;\n}\n\nexport interface FastaDataImportDialogProps extends WithDialogRenderProps<FastaDataImportDialogOpenProps> {\n extraActions?: DialogAction[];\n onDataChange: (fasta: string, metaData?: string) => void;\n onError: (error: unknown) => void;\n}\n\nexport type FastaDataImportDialogRefMethods = WithDialogRefMethods<FastaDataImportDialogProps, FastaDataImportDialogOpenProps>;\n\nexport const FastaDataImportDialog = withDialog<FastaDataImportDialogProps, FastaDataImportDialogOpenProps>((\n {\n extraActions,\n onActionsChange,\n onClose,\n onDataChange,\n onDisableBackdropClickChange,\n onError,\n onNoCloseButtonChange,\n openProps,\n }: FastaDataImportDialogProps,\n): ReactElement => {\n // FASTA state\n const [fastaTab, setFastaTab] = useState(FASTA_TAB.DROP);\n const [fastaFile, setFastaFile] = useState<FileList | null>(null);\n const [fastaUrl, setFastaUrl] = useState('');\n const [fastaText, setFastaText] = useState('');\n\n // Metadata state\n const [metadataTab, setMetadataTab] = useState(META_DATA_TAB.DROP);\n const [metadataFile, setMetadataFile] = useState<FileList | null>(null);\n const [metadataUrl, setMetadataUrl] = useState('');\n const [metadataText, setMetadataText] = useState('');\n\n const [isLoading, setIsLoading] = useState(false);\n const [errorMsg, setErrorMsg] = useState<null | string>(null);\n\n useEffect(() => {\n setErrorMsg(openProps?.initialErrorMessage ?? null);\n }, [openProps]);\n\n useEffect(() => {\n if (onNoCloseButtonChange) {\n onNoCloseButtonChange(!!openProps?.initialErrorMessage);\n }\n if (onDisableBackdropClickChange) {\n onDisableBackdropClickChange(!!openProps?.initialErrorMessage);\n }\n }, [onDisableBackdropClickChange, onNoCloseButtonChange, openProps?.initialErrorMessage]);\n\n const onCloseError = useCallback(() => setErrorMsg(null), []);\n const onChangeFastaTab = useCallback((_event: SyntheticEvent, value: number) => {\n setFastaTab(value);\n }, []);\n const onChangeMetadataTab = useCallback((_event: SyntheticEvent, value: number) => {\n setMetadataTab(value);\n }, []);\n const onFileSelectedFasta = useCallback((file: FileList) => setFastaFile(file), []);\n const onFileSelectedMetadata = useCallback((file: FileList) => setMetadataFile(file), []);\n const onChangeFastaUrl = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setFastaUrl(event.target.value);\n }, []);\n const onChangeFastaText = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setFastaText(event.target.value);\n }, []);\n const onChangeMetadataUrl = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setMetadataUrl(event.target.value);\n }, []);\n const onChangeMetadataText = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setMetadataText(event.target.value);\n }, []);\n\n const onClickLoadData = useCallback(async () => {\n setErrorMsg(null);\n setIsLoading(true);\n\n try {\n // 1. Resolve FASTA content\n let fastaContent = '';\n if (fastaTab === FASTA_TAB.DROP && fastaFile) {\n fastaContent = await fastaFile[0].text();\n } else if (fastaTab === FASTA_TAB.URL && fastaUrl.trim()) {\n const res = await fetch(fastaUrl.trim());\n if (!res.ok) {\n throw new Error(`Failed to fetch FASTA from URL (${res.status} ${res.statusText})`);\n }\n fastaContent = await res.text();\n } else if (fastaTab === FASTA_TAB.PASTE && fastaText.trim()) {\n fastaContent = fastaText.trim();\n }\n\n if (!fastaContent?.trim()) {\n throw new Error('Please provide FASTA sequence data via file, URL, or paste.');\n }\n\n // 2. Resolve Metadata content (optional)\n let metadataContent = '';\n if (metadataTab === META_DATA_TAB.DROP && metadataFile) {\n metadataContent = await metadataFile[0].text();\n } else if (metadataTab === META_DATA_TAB.URL && metadataUrl.trim()) {\n const res = await fetch(metadataUrl.trim());\n if (!res.ok) {\n throw new Error(`Failed to fetch Metadata from URL (${res.status} ${res.statusText})`);\n }\n metadataContent = await res.text();\n } else if (metadataTab === META_DATA_TAB.PASTE && metadataText.trim()) {\n metadataContent = metadataText.trim();\n }\n onDataChange(fastaContent, metadataContent);\n if (onClose) {\n onClose();\n }\n } catch (err: unknown) {\n console.error('Data import failed:', err);\n onError(err);\n } finally {\n setIsLoading(false);\n }\n }, [fastaFile, fastaTab, fastaText, fastaUrl, metadataFile, metadataTab, metadataText, metadataUrl, onClose, onDataChange, onError]);\n\n\n useEffect(() => {\n const actions: DialogAction[] = [\n {\n disabled: isLoading,\n label: isLoading ? 'Processing...' : 'Load & Calculate',\n onClick: onClickLoadData,\n startIcon: isLoading ? (\n <CircularProgress\n color={'inherit'}\n size={18}\n />\n ) : undefined,\n variant: 'contained',\n },\n ];\n if (extraActions?.length) {\n actions.unshift(...extraActions);\n }\n if (onActionsChange) {\n onActionsChange(actions);\n }\n }, [onActionsChange, onClickLoadData, isLoading, extraActions]);\n\n return (\n <>\n {errorMsg && (\n <Alert\n onClose={onCloseError}\n severity={'error'}\n sx={{\n marginBottom: 2,\n }}\n >\n {errorMsg}\n </Alert>\n )}\n <Box sx={{ display: 'grid', gap: 3, gridTemplateColumns: { md: '1fr 1fr', xs: '1fr' } }}>\n {/* FASTA Sequences Group */}\n <Paper\n sx={{ borderRadius: 2, p: 2.5 }}\n variant={'outlined'}\n >\n <Box sx={{ alignItems: 'center', display: 'flex', gap: 1, mb: 1.5 }}>\n <DnaIcon color={'primary'} />\n <Typography\n sx={{ fontWeight: 700 }}\n variant={'subtitle1'}\n >\n {'1. FASTA Sequences (Required)'}\n </Typography>\n </Box>\n <Typography\n color={'text.secondary'}\n sx={{ display: 'block', mb: 2 }}\n variant={'caption'}\n >\n {'Pre-aligned nucleotide or amino-acid sequence data.'}\n </Typography>\n <Tabs\n onChange={onChangeFastaTab}\n sx={{ mb: 2, minHeight: 36 }}\n value={fastaTab}\n >\n <Tab\n label={'File Upload'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Public URL'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Direct Paste'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n </Tabs>\n {fastaTab === FASTA_TAB.DROP && (\n <FileDropZone\n accept={'.fasta,.fa,.fna,.aln'}\n files={fastaFile}\n helperText={'Drag & drop .fasta / .fa alignment file'}\n onFilesSelected={onFileSelectedFasta}\n />\n )}\n {fastaTab === FASTA_TAB.URL && (\n <Box sx={{ display: 'flex', flexDirection: 'column', gap: 1.5, justifyContent: 'center', minHeight: 180 }}>\n <TextField\n fullWidth\n helperText={'Enter a publicly accessible URL to a FASTA alignment'}\n label={'FASTA URL'}\n onChange={onChangeFastaUrl}\n placeholder={'https://example.com/sequences.fasta'}\n value={fastaUrl}\n variant={'outlined'}\n />\n </Box>\n )}\n {fastaTab === FASTA_TAB.PASTE && (\n <Box sx={{ minHeight: 180 }}>\n <TextField\n fullWidth\n label={'Paste FASTA Content'}\n multiline\n onChange={onChangeFastaText}\n placeholder={'>seq1&#10;ACTG...&#10;>seq2&#10;ACTG...'}\n rows={6}\n sx={{ fontFamily: 'monospace' }}\n value={fastaText}\n variant={'outlined'}\n />\n </Box>\n )}\n </Paper>\n {/* TSV Metadata Group */}\n <Paper\n sx={{ borderRadius: 2, p: 2.5 }}\n variant={'outlined'}\n >\n <Box sx={{ alignItems: 'center', display: 'flex', gap: 1, mb: 1.5 }}>\n <TableChartIcon color={'primary'} />\n <Typography\n sx={{ fontWeight: 700 }}\n variant={'subtitle1'}\n >\n {'2. TSV Metadata (Optional)'}\n </Typography>\n </Box>\n <Typography\n color={'text.primary'}\n sx={{ display: 'block', mb: 2 }}\n variant={'caption'}\n >\n {'Sample attributes for coloring, search & custom leaf labels.'}\n </Typography>\n <Tabs\n onChange={onChangeMetadataTab}\n sx={{ mb: 2, minHeight: 36 }}\n value={metadataTab}\n >\n <Tab\n label={'File Upload'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Public URL'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Direct Paste'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n </Tabs>\n {metadataTab === META_DATA_TAB.DROP && (\n <FileDropZone\n accept={'.tsv,.txt,.csv'}\n files={metadataFile}\n label={'TSV Metadata File'}\n onFilesSelected={onFileSelectedMetadata}\n />\n )}\n {metadataTab === META_DATA_TAB.URL && (\n <Box sx={{ display: 'flex', flexDirection: 'column', gap: 1.5, justifyContent: 'center', minHeight: 180 }}>\n <TextField\n fullWidth\n helperText={'Enter a publicly accessible URL to a TSV metadata file'}\n label={'Metadata TSV URL'}\n onChange={onChangeMetadataUrl}\n placeholder={'https://example.com/metadata.tsv'}\n value={metadataUrl}\n variant={'outlined'}\n />\n </Box>\n )}\n {metadataTab === META_DATA_TAB.PASTE && (\n <Box sx={{ minHeight: 180 }}>\n <TextField\n fullWidth\n label={'Paste TSV Content'}\n multiline\n onChange={onChangeMetadataText}\n placeholder={'SampleID&#9;Country&#9;Date&#10;Sample1&#9;NL&#9;2024-01-01'}\n rows={6}\n sx={{ fontFamily: 'monospace' }}\n value={metadataText}\n variant={'outlined'}\n />\n </Box>\n )}\n </Paper>\n </Box>\n </>\n );\n}, {\n defaultTitle: 'Load Phylogenetic Data',\n fullWidth: true,\n maxWidth: 'xl',\n testId: 'FastaDataImportDialog',\n});\n"],"mappings":";;;;;;;;AAuDA,IAAaG,IAAwBC,GACnC,EACE,iBACA,oBACA,YACA,iBACA,iCACA,YACA,0BACA,mBAEe;CAEjB,IAAM,CAACC,GAAUC,KAAeC,EAAA,CAAuB,GACjD,CAACC,GAAWC,KAAgBF,EAA0B,IAAI,GAC1D,CAACG,GAAUC,KAAeJ,EAAS,EAAE,GACrC,CAACK,GAAWC,KAAgBN,EAAS,EAAE,GAGvC,CAACO,GAAaC,MAAkBR,EAAA,CAA2B,GAC3D,CAACS,GAAcC,KAAmBV,EAA0B,IAAI,GAChE,CAACW,GAAaC,KAAkBZ,EAAS,EAAE,GAC3C,CAACa,GAAcC,KAAmBd,EAAS,EAAE,GAE7C,CAACe,GAAWC,KAAgBhB,EAAS,EAAK,GAC1C,CAACiB,GAAUC,KAAelB,EAAwB,IAAI;CAM5D,AAJAmB,QAAgB;EACd,EAAYC,GAAW,uBAAuB,IAAI;CACpD,GAAG,CAACA,CAAS,CAAC,GAEdD,QAAgB;EAId,AAHIE,KACFA,EAAsB,CAAC,CAACD,GAAW,mBAAmB,GAEpDE,KACFA,EAA6B,CAAC,CAACF,GAAW,mBAAmB;CAEjE,GAAG;EAACE;EAA8BD;EAAuBD,GAAW;CAAmB,CAAC;CAExF,IAAMG,IAAeC,QAAkBN,EAAY,IAAI,GAAG,CAAC,CAAC,GACtDO,IAAmBD,GAAa,GAAwB,MAAkB;EAC9E,EAAYE,CAAK;CACnB,GAAG,CAAC,CAAC,GACCC,IAAsBH,GAAa,GAAwB,MAAkB;EACjF,GAAeE,CAAK;CACtB,GAAG,CAAC,CAAC,GACCE,IAAsBJ,GAAa,MAAmBtB,EAAa2B,CAAI,GAAG,CAAC,CAAC,GAC5EC,IAAyBN,GAAa,MAAmBd,EAAgBmB,CAAI,GAAG,CAAC,CAAC,GAClFE,IAAmBP,GAAa,MAAyC;EAC7E,EAAYQ,EAAM,OAAO,KAAK;CAChC,GAAG,CAAC,CAAC,GACCC,IAAoBT,GAAa,MAAyC;EAC9E,EAAaQ,EAAM,OAAO,KAAK;CACjC,GAAG,CAAC,CAAC,GACCE,IAAsBV,GAAa,MAAyC;EAChF,EAAeQ,EAAM,OAAO,KAAK;CACnC,GAAG,CAAC,CAAC,GACCG,IAAuBX,GAAa,MAAyC;EACjF,EAAgBQ,EAAM,OAAO,KAAK;CACpC,GAAG,CAAC,CAAC,GAECI,IAAkBZ,EAAY,YAAY;EAE9C,AADAN,EAAY,IAAI,GAChBF,EAAa,EAAI;EAEjB,IAAI;GAEF,IAAIqB,IAAe;GACnB,IAAIvC,MAAA,KAA+BG,GACjC,IAAe,MAAMA,EAAU,EAAE,CAAC,KAAK;QAClC,IAAIH,MAAA,KAA8BK,EAAS,KAAK,GAAG;IACxD,IAAMmC,IAAM,MAAM,MAAMnC,EAAS,KAAK,CAAC;IACvC,IAAI,CAACmC,EAAI,IACP,MAAU,MAAM,mCAAmCA,EAAI,OAAO,GAAGA,EAAI,WAAW,EAAE;IAEpF,IAAe,MAAMA,EAAI,KAAK;GAChC,OAAO,AAAIxC,MAAA,KAAgCO,EAAU,KAAK,MACxD,IAAeA,EAAU,KAAK;GAGhC,IAAI,CAACgC,GAAc,KAAK,GACtB,MAAU,MAAM,6DAA6D;GAI/E,IAAIE,IAAkB;GACtB,IAAIhC,MAAA,KAAsCE,GACxC,IAAkB,MAAMA,EAAa,EAAE,CAAC,KAAK;QACxC,IAAIF,MAAA,KAAqCI,EAAY,KAAK,GAAG;IAClE,IAAM2B,IAAM,MAAM,MAAM3B,EAAY,KAAK,CAAC;IAC1C,IAAI,CAAC2B,EAAI,IACP,MAAU,MAAM,sCAAsCA,EAAI,OAAO,GAAGA,EAAI,WAAW,EAAE;IAEvF,IAAkB,MAAMA,EAAI,KAAK;GACnC,OAAO,AAAI/B,MAAA,KAAuCM,EAAa,KAAK,MAClE,IAAkBA,EAAa,KAAK;GAGtC,AADA2B,EAAaH,GAAcE,CAAe,GACtCE,KACFA,EAAQ;EAEZ,SAASC,GAAc;GAErB,AADA,QAAQ,MAAM,uBAAuBA,CAAG,GACxCC,EAAQD,CAAG;EACb,UAAU;GACR,EAAa,EAAK;EACpB;CACF,GAAG;EAACzC;EAAWH;EAAUO;EAAWF;EAAUM;EAAcF;EAAaM;EAAcF;EAAa8B;EAASD;EAAcG;CAAO,CAAC;CA0BnI,OAvBAxB,QAAgB;EACd,IAAMyB,IAA0B,CAC9B;GACE,UAAU7B;GACV,OAAOA,IAAY,kBAAkB;GACrC,SAASqB;GACT,WAAWrB,IACT,kBAAC8B,GAAD;IACE,OAAO;IACP,MAAM;GACP,CAAA,IACC,KAAA;GACJ,SAAS;EACX,CACF;EAIA,AAHIC,GAAc,UAChBF,EAAQ,QAAQ,GAAGE,CAAY,GAE7BC,KACFA,EAAgBH,CAAO;CAE3B,GAAG;EAACG;EAAiBX;EAAiBrB;EAAW+B;CAAY,CAAC,GAG5D,kBAAArD,GAAA,EAAA,UAAA,CACGwB,KACC,kBAACgC,GAAD;EACE,SAAS1B;EACT,UAAU;EACV,IAAI,EACF,cAAc,EAChB;EAEC,UAAAN;CACI,CAAA,GAET,kBAACiC,GAAD;EAAK,IAAI;GAAE,SAAS;GAAQ,KAAK;GAAG,qBAAqB;IAAE,IAAI;IAAW,IAAI;GAAM;EAAE;EAAtF,UAAA,CAEE,kBAACC,GAAD;GACE,IAAI;IAAE,cAAc;IAAG,GAAG;GAAI;GAC9B,SAAS;GAFX,UAAA;IAIE,kBAACD,GAAD;KAAK,IAAI;MAAE,YAAY;MAAU,SAAS;MAAQ,KAAK;MAAG,IAAI;KAAI;KAAlE,UAAA,CACE,kBAACxD,GAAD,EAAS,OAAO,UAAY,CAAA,GAC5B,kBAAC0D,GAAD;MACE,IAAI,EAAE,YAAY,IAAI;MACtB,SAAS;MAER,UAAA;KACS,CAAA,CACT;;IACL,kBAACA,GAAD;KACE,OAAO;KACP,IAAI;MAAE,SAAS;MAAS,IAAI;KAAE;KAC9B,SAAS;KAER,UAAA;IACS,CAAA;IACZ,kBAACC,GAAD;KACE,UAAU5B;KACV,IAAI;MAAE,IAAI;MAAG,WAAW;KAAG;KAC3B,OAAO3B;KAHT,UAAA;MAKE,kBAACwD,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;KACG;;IACLxD,MAAA,KACC,kBAACyD,GAAD;KACE,QAAQ;KACR,OAAOtD;KACP,YAAY;KACZ,iBAAiB2B;IAClB,CAAA;IAEF9B,MAAA,KACC,kBAACoD,GAAD;KAAK,IAAI;MAAE,SAAS;MAAQ,eAAe;MAAU,KAAK;MAAK,gBAAgB;MAAU,WAAW;KAAI;KACtG,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,YAAY;MACZ,OAAO;MACP,UAAUzB;MACV,aAAa;MACb,OAAO5B;MACP,SAAS;KACV,CAAA;IACE,CAAA;IAENL,MAAA,KACC,kBAACoD,GAAD;KAAK,IAAI,EAAE,WAAW,IAAI;KACxB,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,OAAO;MACP,WAAA;MACA,UAAUvB;MACV,aAAa;MACb,MAAM;MACN,IAAI,EAAE,YAAY,YAAY;MAC9B,OAAO5B;MACP,SAAS;KACV,CAAA;IACE,CAAA;GAEF;EAEP,CAAA,GAAA,kBAAC8C,GAAD;GACE,IAAI;IAAE,cAAc;IAAG,GAAG;GAAI;GAC9B,SAAS;GAFX,UAAA;IAIE,kBAACD,GAAD;KAAK,IAAI;MAAE,YAAY;MAAU,SAAS;MAAQ,KAAK;MAAG,IAAI;KAAI;KAAlE,UAAA,CACE,kBAACvD,GAAD,EAAgB,OAAO,UAAY,CAAA,GACnC,kBAACyD,GAAD;MACE,IAAI,EAAE,YAAY,IAAI;MACtB,SAAS;MAER,UAAA;KACS,CAAA,CACT;;IACL,kBAACA,GAAD;KACE,OAAO;KACP,IAAI;MAAE,SAAS;MAAS,IAAI;KAAE;KAC9B,SAAS;KAER,UAAA;IACS,CAAA;IACZ,kBAACC,GAAD;KACE,UAAU1B;KACV,IAAI;MAAE,IAAI;MAAG,WAAW;KAAG;KAC3B,OAAOpB;KAHT,UAAA;MAKE,kBAAC+C,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;KACG;;IACL/C,MAAA,KACC,kBAACgD,GAAD;KACE,QAAQ;KACR,OAAO9C;KACP,OAAO;KACP,iBAAiBqB;IAClB,CAAA;IAEFvB,MAAA,KACC,kBAAC2C,GAAD;KAAK,IAAI;MAAE,SAAS;MAAQ,eAAe;MAAU,KAAK;MAAK,gBAAgB;MAAU,WAAW;KAAI;KACtG,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,YAAY;MACZ,OAAO;MACP,UAAUtB;MACV,aAAa;MACb,OAAOvB;MACP,SAAS;KACV,CAAA;IACE,CAAA;IAENJ,MAAA,KACC,kBAAC2C,GAAD;KAAK,IAAI,EAAE,WAAW,IAAI;KACxB,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,OAAO;MACP,WAAA;MACA,UAAUrB;MACV,aAAa;MACb,MAAM;MACN,IAAI,EAAE,YAAY,YAAY;MAC9B,OAAOtB;MACP,SAAS;KACV,CAAA;IACE,CAAA;GAEF;EACJ,CAAA,CAAA;CACL,CAAA,CAAA,EAAA,CAAA;AAEN,GAAG;CACD,cAAc;CACd,WAAW;CACX,UAAU;CACV,QAAQ;AACV,CAAC"}
1
+ {"version":3,"file":"index.js","names":["_Fragment","DnaIcon","TableChartIcon","FastaDataImportDialog","withDialog","fastaTab","setFastaTab","useState","fastaFile","setFastaFile","fastaUrl","setFastaUrl","fastaText","setFastaText","metadataTab","setMetadataTab","metadataFile","setMetadataFile","metadataUrl","setMetadataUrl","metadataText","setMetadataText","isLoading","setIsLoading","errorMsg","setErrorMsg","useEffect","openProps","onNoCloseButtonChange","onDisableBackdropClickChange","onCloseError","useCallback","onChangeFastaTab","value","onChangeMetadataTab","onFileSelectedFasta","file","onFileSelectedMetadata","onChangeFastaUrl","event","onChangeFastaText","onChangeMetadataUrl","onChangeMetadataText","onClickLoadData","fastaContent","res","metadataContent","onDataChange","onClose","err","onError","actions","CircularProgress","extraActions","onActionsChange","Fragment","Alert","Box","Paper","Typography","Tabs","Tab","FileDropZone","TextField"],"sources":["../../../../src/components/fasta/FastaDataImportDialog/FastaDataImportDialog.tsx"],"sourcesContent":["import type {\n ChangeEvent,\n ReactElement,\n SyntheticEvent,\n} from 'react';\nimport {\n useCallback,\n useEffect,\n useState,\n} from 'react';\nimport {\n Alert,\n Box,\n CircularProgress,\n Paper,\n Tab,\n Tabs,\n TextField,\n Typography,\n} from '@mui/material';\nimport DnaIcon from '@mui/icons-material/Biotech';\nimport TableChartIcon from '@mui/icons-material/TableChart';\nimport { FileDropZone } from '@gen-epix/ui-core-components/components/FileDropZone';\nimport type {\n WithDialogRefMethods,\n WithDialogRenderProps,\n} from '@gen-epix/ui-core-components/hoc/withDialog';\nimport { withDialog } from '@gen-epix/ui-core-components/hoc/withDialog';\nimport type { DialogAction } from '@gen-epix/ui-core-components/components/Dialog';\n\n\nenum FASTA_TAB {\n DROP = 0,\n URL = 1,\n PASTE = 2,\n}\n\nenum META_DATA_TAB {\n DROP = 0,\n URL = 1,\n PASTE = 2,\n}\n\nexport interface FastaDataImportDialogOpenProps {\n initialErrorMessage?: string;\n}\n\nexport interface FastaDataImportDialogProps extends WithDialogRenderProps<FastaDataImportDialogOpenProps> {\n extraActions?: DialogAction[];\n onDataChange: (fasta: string, metaData?: string) => void;\n onError: (error: unknown) => void;\n}\n\nexport type FastaDataImportDialogRefMethods = WithDialogRefMethods<FastaDataImportDialogProps, FastaDataImportDialogOpenProps>;\n\nexport const FastaDataImportDialog = withDialog<FastaDataImportDialogProps, FastaDataImportDialogOpenProps>((\n {\n extraActions,\n onActionsChange,\n onClose,\n onDataChange,\n onDisableBackdropClickChange,\n onError,\n onNoCloseButtonChange,\n openProps,\n }: FastaDataImportDialogProps,\n): ReactElement => {\n // FASTA state\n const [fastaTab, setFastaTab] = useState(FASTA_TAB.DROP);\n const [fastaFile, setFastaFile] = useState<FileList | null>(null);\n const [fastaUrl, setFastaUrl] = useState('');\n const [fastaText, setFastaText] = useState('');\n\n // Metadata state\n const [metadataTab, setMetadataTab] = useState(META_DATA_TAB.DROP);\n const [metadataFile, setMetadataFile] = useState<FileList | null>(null);\n const [metadataUrl, setMetadataUrl] = useState('');\n const [metadataText, setMetadataText] = useState('');\n\n const [isLoading, setIsLoading] = useState(false);\n const [errorMsg, setErrorMsg] = useState<null | string>(null);\n\n useEffect(() => {\n setErrorMsg(openProps?.initialErrorMessage ?? null);\n }, [openProps]);\n\n useEffect(() => {\n if (onNoCloseButtonChange) {\n onNoCloseButtonChange(!!openProps?.initialErrorMessage);\n }\n if (onDisableBackdropClickChange) {\n onDisableBackdropClickChange(!!openProps?.initialErrorMessage);\n }\n }, [onDisableBackdropClickChange, onNoCloseButtonChange, openProps?.initialErrorMessage]);\n\n const onCloseError = useCallback(() => setErrorMsg(null), []);\n const onChangeFastaTab = useCallback((_event: SyntheticEvent, value: number) => {\n setFastaTab(value);\n }, []);\n const onChangeMetadataTab = useCallback((_event: SyntheticEvent, value: number) => {\n setMetadataTab(value);\n }, []);\n const onFileSelectedFasta = useCallback((file: FileList) => setFastaFile(file), []);\n const onFileSelectedMetadata = useCallback((file: FileList) => setMetadataFile(file), []);\n const onChangeFastaUrl = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setFastaUrl(event.target.value);\n }, []);\n const onChangeFastaText = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setFastaText(event.target.value);\n }, []);\n const onChangeMetadataUrl = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setMetadataUrl(event.target.value);\n }, []);\n const onChangeMetadataText = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n setMetadataText(event.target.value);\n }, []);\n\n const onClickLoadData = useCallback(async () => {\n setErrorMsg(null);\n setIsLoading(true);\n\n try {\n // 1. Resolve FASTA content\n let fastaContent = '';\n if (fastaTab === FASTA_TAB.DROP && fastaFile) {\n fastaContent = await fastaFile[0].text();\n } else if (fastaTab === FASTA_TAB.URL && fastaUrl.trim()) {\n const res = await fetch(fastaUrl.trim());\n if (!res.ok) {\n throw new Error(`Failed to fetch FASTA from URL (${res.status} ${res.statusText})`);\n }\n fastaContent = await res.text();\n } else if (fastaTab === FASTA_TAB.PASTE && fastaText.trim()) {\n fastaContent = fastaText.trim();\n }\n\n if (!fastaContent?.trim()) {\n throw new Error('Please provide FASTA sequence data via file, URL, or paste.');\n }\n\n // 2. Resolve Metadata content (optional)\n let metadataContent = '';\n if (metadataTab === META_DATA_TAB.DROP && metadataFile) {\n metadataContent = await metadataFile[0].text();\n } else if (metadataTab === META_DATA_TAB.URL && metadataUrl.trim()) {\n const res = await fetch(metadataUrl.trim());\n if (!res.ok) {\n throw new Error(`Failed to fetch Metadata from URL (${res.status} ${res.statusText})`);\n }\n metadataContent = await res.text();\n } else if (metadataTab === META_DATA_TAB.PASTE && metadataText.trim()) {\n metadataContent = metadataText.trim();\n }\n onDataChange(fastaContent, metadataContent);\n if (onClose) {\n onClose();\n }\n } catch (err: unknown) {\n console.error('Data import failed:', err);\n onError(err);\n } finally {\n setIsLoading(false);\n }\n }, [fastaFile, fastaTab, fastaText, fastaUrl, metadataFile, metadataTab, metadataText, metadataUrl, onClose, onDataChange, onError]);\n\n\n useEffect(() => {\n const actions: DialogAction[] = [\n {\n disabled: isLoading,\n label: isLoading ? 'Processing...' : 'Load & Calculate',\n onClick: onClickLoadData,\n startIcon: isLoading ? (\n <CircularProgress\n color={'inherit'}\n size={18}\n />\n ) : undefined,\n variant: 'contained',\n },\n ];\n if (extraActions?.length) {\n actions.unshift(...extraActions);\n }\n if (onActionsChange) {\n onActionsChange(actions);\n }\n }, [onActionsChange, onClickLoadData, isLoading, extraActions]);\n\n return (\n <>\n {errorMsg && (\n <Alert\n onClose={onCloseError}\n severity={'error'}\n sx={{\n marginBottom: 2,\n }}\n >\n {errorMsg}\n </Alert>\n )}\n <Box sx={{ display: 'grid', gap: 3, gridTemplateColumns: { md: '1fr 1fr', xs: '1fr' } }}>\n {/* FASTA Sequences Group */}\n <Paper\n sx={{ borderRadius: 2, p: 2.5 }}\n variant={'outlined'}\n >\n <Box sx={{ alignItems: 'center', display: 'flex', gap: 1, mb: 1.5 }}>\n <DnaIcon color={'primary'} />\n <Typography\n sx={{ fontWeight: 700 }}\n variant={'subtitle1'}\n >\n {'1. FASTA Sequences (required)'}\n </Typography>\n </Box>\n <Typography\n color={'text.secondary'}\n sx={{ display: 'block', mb: 2 }}\n variant={'caption'}\n >\n {'Pre-aligned nucleotide or amino-acid sequence data.'}\n </Typography>\n <Tabs\n onChange={onChangeFastaTab}\n sx={{ mb: 2, minHeight: 36 }}\n value={fastaTab}\n >\n <Tab\n label={'File Upload'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Public URL'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Direct Paste'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n </Tabs>\n {fastaTab === FASTA_TAB.DROP && (\n <FileDropZone\n accept={'.fasta,.fa,.fna,.aln'}\n files={fastaFile}\n helperText={'Drag & drop .fasta / .fa alignment file'}\n onFilesSelected={onFileSelectedFasta}\n />\n )}\n {fastaTab === FASTA_TAB.URL && (\n <Box sx={{ display: 'flex', flexDirection: 'column', gap: 1.5, justifyContent: 'center', minHeight: 180 }}>\n <TextField\n fullWidth\n helperText={'Enter a publicly accessible URL to a FASTA alignment'}\n label={'FASTA URL'}\n onChange={onChangeFastaUrl}\n placeholder={'https://example.com/sequences.fasta'}\n value={fastaUrl}\n variant={'outlined'}\n />\n </Box>\n )}\n {fastaTab === FASTA_TAB.PASTE && (\n <Box sx={{ minHeight: 180 }}>\n <TextField\n fullWidth\n label={'Paste FASTA Content'}\n multiline\n onChange={onChangeFastaText}\n placeholder={'>seq1&#10;ACTG...&#10;>seq2&#10;ACTG...'}\n rows={6}\n sx={{ fontFamily: 'monospace' }}\n value={fastaText}\n variant={'outlined'}\n />\n </Box>\n )}\n </Paper>\n {/* TSV Metadata Group */}\n <Paper\n sx={{ borderRadius: 2, p: 2.5 }}\n variant={'outlined'}\n >\n <Box sx={{ alignItems: 'center', display: 'flex', gap: 1, mb: 1.5 }}>\n <TableChartIcon color={'primary'} />\n <Typography\n sx={{ fontWeight: 700 }}\n variant={'subtitle1'}\n >\n {'2. TSV Metadata (optional)'}\n </Typography>\n </Box>\n <Typography\n color={'text.primary'}\n sx={{ display: 'block', mb: 2 }}\n variant={'caption'}\n >\n {'Sample attributes for coloring, search & custom leaf labels.'}\n </Typography>\n <Tabs\n onChange={onChangeMetadataTab}\n sx={{ mb: 2, minHeight: 36 }}\n value={metadataTab}\n >\n <Tab\n label={'File Upload'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Public URL'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n <Tab\n label={'Direct Paste'}\n sx={{ fontSize: '0.85rem', py: 0.5 }}\n />\n </Tabs>\n {metadataTab === META_DATA_TAB.DROP && (\n <FileDropZone\n accept={'.tsv,.txt,.csv'}\n files={metadataFile}\n label={'TSV Metadata File'}\n onFilesSelected={onFileSelectedMetadata}\n />\n )}\n {metadataTab === META_DATA_TAB.URL && (\n <Box sx={{ display: 'flex', flexDirection: 'column', gap: 1.5, justifyContent: 'center', minHeight: 180 }}>\n <TextField\n fullWidth\n helperText={'Enter a publicly accessible URL to a TSV metadata file'}\n label={'Metadata TSV URL'}\n onChange={onChangeMetadataUrl}\n placeholder={'https://example.com/metadata.tsv'}\n value={metadataUrl}\n variant={'outlined'}\n />\n </Box>\n )}\n {metadataTab === META_DATA_TAB.PASTE && (\n <Box sx={{ minHeight: 180 }}>\n <TextField\n fullWidth\n label={'Paste TSV Content'}\n multiline\n onChange={onChangeMetadataText}\n placeholder={'SampleID&#9;Country&#9;Date&#10;Sample1&#9;NL&#9;2024-01-01'}\n rows={6}\n sx={{ fontFamily: 'monospace' }}\n value={metadataText}\n variant={'outlined'}\n />\n </Box>\n )}\n </Paper>\n </Box>\n </>\n );\n}, {\n defaultTitle: 'Load phylogenetic data',\n fullWidth: true,\n maxWidth: 'xl',\n testId: 'FastaDataImportDialog',\n});\n"],"mappings":";;;;;;;;AAuDA,IAAaG,IAAwBC,GACnC,EACE,iBACA,oBACA,YACA,iBACA,iCACA,YACA,0BACA,mBAEe;CAEjB,IAAM,CAACC,GAAUC,KAAeC,EAAA,CAAuB,GACjD,CAACC,GAAWC,KAAgBF,EAA0B,IAAI,GAC1D,CAACG,GAAUC,KAAeJ,EAAS,EAAE,GACrC,CAACK,GAAWC,KAAgBN,EAAS,EAAE,GAGvC,CAACO,GAAaC,MAAkBR,EAAA,CAA2B,GAC3D,CAACS,GAAcC,KAAmBV,EAA0B,IAAI,GAChE,CAACW,GAAaC,KAAkBZ,EAAS,EAAE,GAC3C,CAACa,GAAcC,KAAmBd,EAAS,EAAE,GAE7C,CAACe,GAAWC,KAAgBhB,EAAS,EAAK,GAC1C,CAACiB,GAAUC,KAAelB,EAAwB,IAAI;CAM5D,AAJAmB,QAAgB;EACd,EAAYC,GAAW,uBAAuB,IAAI;CACpD,GAAG,CAACA,CAAS,CAAC,GAEdD,QAAgB;EAId,AAHIE,KACFA,EAAsB,CAAC,CAACD,GAAW,mBAAmB,GAEpDE,KACFA,EAA6B,CAAC,CAACF,GAAW,mBAAmB;CAEjE,GAAG;EAACE;EAA8BD;EAAuBD,GAAW;CAAmB,CAAC;CAExF,IAAMG,IAAeC,QAAkBN,EAAY,IAAI,GAAG,CAAC,CAAC,GACtDO,IAAmBD,GAAa,GAAwB,MAAkB;EAC9E,EAAYE,CAAK;CACnB,GAAG,CAAC,CAAC,GACCC,IAAsBH,GAAa,GAAwB,MAAkB;EACjF,GAAeE,CAAK;CACtB,GAAG,CAAC,CAAC,GACCE,IAAsBJ,GAAa,MAAmBtB,EAAa2B,CAAI,GAAG,CAAC,CAAC,GAC5EC,IAAyBN,GAAa,MAAmBd,EAAgBmB,CAAI,GAAG,CAAC,CAAC,GAClFE,IAAmBP,GAAa,MAAyC;EAC7E,EAAYQ,EAAM,OAAO,KAAK;CAChC,GAAG,CAAC,CAAC,GACCC,IAAoBT,GAAa,MAAyC;EAC9E,EAAaQ,EAAM,OAAO,KAAK;CACjC,GAAG,CAAC,CAAC,GACCE,IAAsBV,GAAa,MAAyC;EAChF,EAAeQ,EAAM,OAAO,KAAK;CACnC,GAAG,CAAC,CAAC,GACCG,IAAuBX,GAAa,MAAyC;EACjF,EAAgBQ,EAAM,OAAO,KAAK;CACpC,GAAG,CAAC,CAAC,GAECI,IAAkBZ,EAAY,YAAY;EAE9C,AADAN,EAAY,IAAI,GAChBF,EAAa,EAAI;EAEjB,IAAI;GAEF,IAAIqB,IAAe;GACnB,IAAIvC,MAAA,KAA+BG,GACjC,IAAe,MAAMA,EAAU,EAAE,CAAC,KAAK;QAClC,IAAIH,MAAA,KAA8BK,EAAS,KAAK,GAAG;IACxD,IAAMmC,IAAM,MAAM,MAAMnC,EAAS,KAAK,CAAC;IACvC,IAAI,CAACmC,EAAI,IACP,MAAU,MAAM,mCAAmCA,EAAI,OAAO,GAAGA,EAAI,WAAW,EAAE;IAEpF,IAAe,MAAMA,EAAI,KAAK;GAChC,OAAO,AAAIxC,MAAA,KAAgCO,EAAU,KAAK,MACxD,IAAeA,EAAU,KAAK;GAGhC,IAAI,CAACgC,GAAc,KAAK,GACtB,MAAU,MAAM,6DAA6D;GAI/E,IAAIE,IAAkB;GACtB,IAAIhC,MAAA,KAAsCE,GACxC,IAAkB,MAAMA,EAAa,EAAE,CAAC,KAAK;QACxC,IAAIF,MAAA,KAAqCI,EAAY,KAAK,GAAG;IAClE,IAAM2B,IAAM,MAAM,MAAM3B,EAAY,KAAK,CAAC;IAC1C,IAAI,CAAC2B,EAAI,IACP,MAAU,MAAM,sCAAsCA,EAAI,OAAO,GAAGA,EAAI,WAAW,EAAE;IAEvF,IAAkB,MAAMA,EAAI,KAAK;GACnC,OAAO,AAAI/B,MAAA,KAAuCM,EAAa,KAAK,MAClE,IAAkBA,EAAa,KAAK;GAGtC,AADA2B,EAAaH,GAAcE,CAAe,GACtCE,KACFA,EAAQ;EAEZ,SAASC,GAAc;GAErB,AADA,QAAQ,MAAM,uBAAuBA,CAAG,GACxCC,EAAQD,CAAG;EACb,UAAU;GACR,EAAa,EAAK;EACpB;CACF,GAAG;EAACzC;EAAWH;EAAUO;EAAWF;EAAUM;EAAcF;EAAaM;EAAcF;EAAa8B;EAASD;EAAcG;CAAO,CAAC;CA0BnI,OAvBAxB,QAAgB;EACd,IAAMyB,IAA0B,CAC9B;GACE,UAAU7B;GACV,OAAOA,IAAY,kBAAkB;GACrC,SAASqB;GACT,WAAWrB,IACT,kBAAC8B,GAAD;IACE,OAAO;IACP,MAAM;GACP,CAAA,IACC,KAAA;GACJ,SAAS;EACX,CACF;EAIA,AAHIC,GAAc,UAChBF,EAAQ,QAAQ,GAAGE,CAAY,GAE7BC,KACFA,EAAgBH,CAAO;CAE3B,GAAG;EAACG;EAAiBX;EAAiBrB;EAAW+B;CAAY,CAAC,GAG5D,kBAAArD,GAAA,EAAA,UAAA,CACGwB,KACC,kBAACgC,GAAD;EACE,SAAS1B;EACT,UAAU;EACV,IAAI,EACF,cAAc,EAChB;EAEC,UAAAN;CACI,CAAA,GAET,kBAACiC,GAAD;EAAK,IAAI;GAAE,SAAS;GAAQ,KAAK;GAAG,qBAAqB;IAAE,IAAI;IAAW,IAAI;GAAM;EAAE;EAAtF,UAAA,CAEE,kBAACC,GAAD;GACE,IAAI;IAAE,cAAc;IAAG,GAAG;GAAI;GAC9B,SAAS;GAFX,UAAA;IAIE,kBAACD,GAAD;KAAK,IAAI;MAAE,YAAY;MAAU,SAAS;MAAQ,KAAK;MAAG,IAAI;KAAI;KAAlE,UAAA,CACE,kBAACxD,GAAD,EAAS,OAAO,UAAY,CAAA,GAC5B,kBAAC0D,GAAD;MACE,IAAI,EAAE,YAAY,IAAI;MACtB,SAAS;MAER,UAAA;KACS,CAAA,CACT;;IACL,kBAACA,GAAD;KACE,OAAO;KACP,IAAI;MAAE,SAAS;MAAS,IAAI;KAAE;KAC9B,SAAS;KAER,UAAA;IACS,CAAA;IACZ,kBAACC,GAAD;KACE,UAAU5B;KACV,IAAI;MAAE,IAAI;MAAG,WAAW;KAAG;KAC3B,OAAO3B;KAHT,UAAA;MAKE,kBAACwD,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;KACG;;IACLxD,MAAA,KACC,kBAACyD,GAAD;KACE,QAAQ;KACR,OAAOtD;KACP,YAAY;KACZ,iBAAiB2B;IAClB,CAAA;IAEF9B,MAAA,KACC,kBAACoD,GAAD;KAAK,IAAI;MAAE,SAAS;MAAQ,eAAe;MAAU,KAAK;MAAK,gBAAgB;MAAU,WAAW;KAAI;KACtG,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,YAAY;MACZ,OAAO;MACP,UAAUzB;MACV,aAAa;MACb,OAAO5B;MACP,SAAS;KACV,CAAA;IACE,CAAA;IAENL,MAAA,KACC,kBAACoD,GAAD;KAAK,IAAI,EAAE,WAAW,IAAI;KACxB,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,OAAO;MACP,WAAA;MACA,UAAUvB;MACV,aAAa;MACb,MAAM;MACN,IAAI,EAAE,YAAY,YAAY;MAC9B,OAAO5B;MACP,SAAS;KACV,CAAA;IACE,CAAA;GAEF;EAEP,CAAA,GAAA,kBAAC8C,GAAD;GACE,IAAI;IAAE,cAAc;IAAG,GAAG;GAAI;GAC9B,SAAS;GAFX,UAAA;IAIE,kBAACD,GAAD;KAAK,IAAI;MAAE,YAAY;MAAU,SAAS;MAAQ,KAAK;MAAG,IAAI;KAAI;KAAlE,UAAA,CACE,kBAACvD,GAAD,EAAgB,OAAO,UAAY,CAAA,GACnC,kBAACyD,GAAD;MACE,IAAI,EAAE,YAAY,IAAI;MACtB,SAAS;MAER,UAAA;KACS,CAAA,CACT;;IACL,kBAACA,GAAD;KACE,OAAO;KACP,IAAI;MAAE,SAAS;MAAS,IAAI;KAAE;KAC9B,SAAS;KAER,UAAA;IACS,CAAA;IACZ,kBAACC,GAAD;KACE,UAAU1B;KACV,IAAI;MAAE,IAAI;MAAG,WAAW;KAAG;KAC3B,OAAOpB;KAHT,UAAA;MAKE,kBAAC+C,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;MACD,kBAACA,GAAD;OACE,OAAO;OACP,IAAI;QAAE,UAAU;QAAW,IAAI;OAAI;MACpC,CAAA;KACG;;IACL/C,MAAA,KACC,kBAACgD,GAAD;KACE,QAAQ;KACR,OAAO9C;KACP,OAAO;KACP,iBAAiBqB;IAClB,CAAA;IAEFvB,MAAA,KACC,kBAAC2C,GAAD;KAAK,IAAI;MAAE,SAAS;MAAQ,eAAe;MAAU,KAAK;MAAK,gBAAgB;MAAU,WAAW;KAAI;KACtG,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,YAAY;MACZ,OAAO;MACP,UAAUtB;MACV,aAAa;MACb,OAAOvB;MACP,SAAS;KACV,CAAA;IACE,CAAA;IAENJ,MAAA,KACC,kBAAC2C,GAAD;KAAK,IAAI,EAAE,WAAW,IAAI;KACxB,UAAA,kBAACM,GAAD;MACE,WAAA;MACA,OAAO;MACP,WAAA;MACA,UAAUrB;MACV,aAAa;MACb,MAAM;MACN,IAAI,EAAE,YAAY,YAAY;MAC9B,OAAOtB;MACP,SAAS;KACV,CAAA;IACE,CAAA;GAEF;EACJ,CAAA,CAAA;CACL,CAAA,CAAA,EAAA,CAAA;AAEN,GAAG;CACD,cAAc;CACd,WAAW;CACX,UAAU;CACV,QAAQ;AACV,CAAC"}
@@ -42,7 +42,7 @@ var l = ({ children: l, isNoInteraction: u, title: d }) => {
42
42
  duration: m.transitions.duration.leavingScreen,
43
43
  easing: m.transitions.easing.sharp
44
44
  }),
45
- width: g ? "calc(100% - 340px)" : "100%"
45
+ width: g ? "calc(100% - 540px)" : "100%"
46
46
  },
47
47
  children: l
48
48
  })]
@@ -18,7 +18,7 @@ var i = ({ children: i }) => {
18
18
  height: "100%",
19
19
  overflowY: "auto",
20
20
  position: "absolute",
21
- width: o ? 340 : 0
21
+ width: o ? 540 : 0
22
22
  } },
23
23
  variant: "persistent",
24
24
  children: i
@@ -1 +1 @@
1
- export declare const DRAWER_WIDTH = 340;
1
+ export declare const DRAWER_WIDTH = 540;
@@ -1,5 +1,5 @@
1
1
  // src/constants/page.constants.ts
2
- var e = 340;
2
+ var e = 540;
3
3
  export { e as DRAWER_WIDTH };
4
4
 
5
5
  //# sourceMappingURL=page.constants.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"page.constants.js","names":["DRAWER_WIDTH"],"sources":["../../src/constants/page.constants.ts"],"sourcesContent":["export const DRAWER_WIDTH = 340;\n"],"mappings":";AAAA,IAAaA,IAAe"}
1
+ {"version":3,"file":"page.constants.js","names":["DRAWER_WIDTH"],"sources":["../../src/constants/page.constants.ts"],"sourcesContent":["export const DRAWER_WIDTH = 540;\n"],"mappings":";AAAA,IAAaA,IAAe"}
@@ -1,5 +1,6 @@
1
1
  export declare class UrlUtil {
2
2
  static clearSearchParams(): void;
3
3
  static fastaLabelFromUrl(url: string): string;
4
+ static getBaseURLWithPath(): string;
4
5
  static validateFastaUrl(url: string): string;
5
6
  }
@@ -14,6 +14,10 @@ var n = class {
14
14
  return "remote-alignment.fasta";
15
15
  }
16
16
  }
17
+ static getBaseURLWithPath() {
18
+ let n = new URL(e.resolve(t).window.location.href);
19
+ return `${n.protocol}//${n.host}/${n.pathname.split("/").filter(Boolean).shift()}`;
20
+ }
17
21
  static validateFastaUrl(e) {
18
22
  let t;
19
23
  try {
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","names":["UrlUtil","url","container","WindowService","urlObject","segment"],"sources":["../../../src/utils/UrlUtil/UrlUtil.ts"],"sourcesContent":["import { container } from 'tsyringe';\nimport { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\n\n\nexport class UrlUtil {\n public static clearSearchParams(): void {\n const url = new URL(container.resolve(WindowService).window.location.href);\n url.search = '';\n container.resolve(WindowService).window.history.replaceState(null, '', url.toString());\n }\n\n public static fastaLabelFromUrl(url: string): string {\n try {\n const urlObject = new URL(url);\n const segment = urlObject.pathname.split('/').filter(Boolean).pop();\n if (segment) {\n return decodeURIComponent(segment);\n }\n return `${urlObject.hostname}.fasta`;\n } catch {\n return 'remote-alignment.fasta';\n }\n }\n\n public static validateFastaUrl(url: string): string {\n let urlObject: URL;\n try {\n urlObject = new URL(url.trim());\n } catch {\n throw new Error('Enter a valid FASTA URL.');\n }\n if (urlObject.protocol !== 'http:' && urlObject.protocol !== 'https:') {\n throw new Error('FASTA URLs must use HTTP or HTTPS.');\n }\n return urlObject.href;\n }\n}\n"],"mappings":";;;AAIA,IAAaA,IAAb,MAAqB;CACnB,OAAc,oBAA0B;EACtC,IAAMC,IAAM,IAAI,IAAIC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,SAAS,IAAI;EAEzE,AADA,EAAI,SAAS,IACbD,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,QAAQ,aAAa,MAAM,IAAIF,EAAI,SAAS,CAAC;CACvF;CAEA,OAAc,kBAAkB,GAAqB;EACnD,IAAI;GACF,IAAMG,IAAY,IAAI,IAAIH,CAAG,GACvBI,IAAUD,EAAU,SAAS,MAAM,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,IAAI;GAIlE,OAHIC,IACK,mBAAmBA,CAAO,IAE5B,GAAGD,EAAU,SAAS;EAC/B,QAAQ;GACN,OAAO;EACT;CACF;CAEA,OAAc,iBAAiB,GAAqB;EAClD,IAAIA;EACJ,IAAI;GACF,IAAY,IAAI,IAAIH,EAAI,KAAK,CAAC;EAChC,QAAQ;GACN,MAAU,MAAM,0BAA0B;EAC5C;EACA,IAAIG,EAAU,aAAa,WAAWA,EAAU,aAAa,UAC3D,MAAU,MAAM,oCAAoC;EAEtD,OAAOA,EAAU;CACnB;AACF"}
1
+ {"version":3,"file":"index.js","names":["UrlUtil","url","container","WindowService","urlObject","segment"],"sources":["../../../src/utils/UrlUtil/UrlUtil.ts"],"sourcesContent":["import { container } from 'tsyringe';\nimport { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\n\n\nexport class UrlUtil {\n public static clearSearchParams(): void {\n const url = new URL(container.resolve(WindowService).window.location.href);\n url.search = '';\n container.resolve(WindowService).window.history.replaceState(null, '', url.toString());\n }\n public static fastaLabelFromUrl(url: string): string {\n try {\n const urlObject = new URL(url);\n const segment = urlObject.pathname.split('/').filter(Boolean).pop();\n if (segment) {\n return decodeURIComponent(segment);\n }\n return `${urlObject.hostname}.fasta`;\n } catch {\n return 'remote-alignment.fasta';\n }\n }\n\n public static getBaseURLWithPath(): string {\n const url = new URL(container.resolve(WindowService).window.location.href);\n return `${url.protocol}//${url.host}/${url.pathname.split('/').filter(Boolean).shift()}`;\n }\n\n public static validateFastaUrl(url: string): string {\n let urlObject: URL;\n try {\n urlObject = new URL(url.trim());\n } catch {\n throw new Error('Enter a valid FASTA URL.');\n }\n if (urlObject.protocol !== 'http:' && urlObject.protocol !== 'https:') {\n throw new Error('FASTA URLs must use HTTP or HTTPS.');\n }\n return urlObject.href;\n }\n}\n"],"mappings":";;;AAIA,IAAaA,IAAb,MAAqB;CACnB,OAAc,oBAA0B;EACtC,IAAMC,IAAM,IAAI,IAAIC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,SAAS,IAAI;EAEzE,AADA,EAAI,SAAS,IACbD,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,QAAQ,aAAa,MAAM,IAAIF,EAAI,SAAS,CAAC;CACvF;CACA,OAAc,kBAAkB,GAAqB;EACnD,IAAI;GACF,IAAMG,IAAY,IAAI,IAAIH,CAAG,GACvBI,IAAUD,EAAU,SAAS,MAAM,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,IAAI;GAIlE,OAHIC,IACK,mBAAmBA,CAAO,IAE5B,GAAGD,EAAU,SAAS;EAC/B,QAAQ;GACN,OAAO;EACT;CACF;CAEA,OAAc,qBAA6B;EACzC,IAAMH,IAAM,IAAI,IAAIC,EAAU,QAAQC,CAAa,CAAC,CAAC,OAAO,SAAS,IAAI;EACzE,OAAO,GAAGF,EAAI,SAAS,IAAIA,EAAI,KAAK,GAAGA,EAAI,SAAS,MAAM,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,MAAM;CACvF;CAEA,OAAc,iBAAiB,GAAqB;EAClD,IAAIG;EACJ,IAAI;GACF,IAAY,IAAI,IAAIH,EAAI,KAAK,CAAC;EAChC,QAAQ;GACN,MAAU,MAAM,0BAA0B;EAC5C;EACA,IAAIG,EAAU,aAAa,WAAWA,EAAU,aAAa,UAC3D,MAAU,MAAM,oCAAoC;EAEtD,OAAOA,EAAU;CACnB;AACF"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@rivm-loculus-tools/common-frontend",
3
- "version": "0.8.0",
3
+ "version": "0.9.0",
4
4
  "license": "EUPL-1.2",
5
5
  "repository": {
6
6
  "type": "git",