@rivm-loculus-tools/common-frontend 0.2.0 → 0.4.0

package/dist/_chunks/EmotionCacheService.js

@@ -0,0 +1,33 @@
+import { CONFIG_TOKEN as e, WINDOW_SERVICE_TOKEN as t } from "../constants/config.constants.js";
+import { t as n } from "./decorate.js";
+import { inject as r, singleton as i } from "tsyringe";
+import a from "@emotion/cache";
+//#region \0@oxc-project+runtime@0.153.0/helpers/esm/decorateParam.js
+function o(e, t) {
+	return function(n, r) {
+		t(n, r, e);
+	};
+}
+//#endregion
+//#region src/classes/services/EmotionCacheService/EmotionCacheService.ts
+var s = class {
+	emotionCache;
+	constructor(e, t) {
+		this.emotionCache = a({
+			container: t.document.head,
+			key: "loculus-tools",
+			nonce: e.nonce,
+			prepend: !!e.nonce,
+			stylisPlugins: []
+		});
+	}
+};
+s = n([
+	i(),
+	o(0, r(e)),
+	o(1, r(t))
+], s);
+//#endregion
+export { s as t };
+
+//# sourceMappingURL=EmotionCacheService.js.map

package/dist/_chunks/EmotionCacheService.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"EmotionCacheService.js","names":["_decorate","_decorateParam","__decorate","createCache","__decorateParam","target","key","paramIndex","EmotionCacheService","windowService","config","singleton","inject","CONFIG_TOKEN","WINDOW_SERVICE_TOKEN"],"sources":["../../src/classes/services/EmotionCacheService/EmotionCacheService.ts"],"sourcesContent":["import type { EmotionCache } from '@emotion/cache';\nimport createCache from '@emotion/cache';\nimport {\n  inject,\n  singleton,\n} from 'tsyringe';\nimport type { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\n\nimport {\n  CONFIG_TOKEN,\n  WINDOW_SERVICE_TOKEN,\n} from '../../../constants/config.constants';\nimport type { ConfigBase } from '../../../models/config.models';\n\n\n@singleton()\nexport class EmotionCacheService {\n  public readonly emotionCache: EmotionCache;\n\n  public constructor(\n    @inject(CONFIG_TOKEN) config: ConfigBase,\n    @inject(WINDOW_SERVICE_TOKEN) windowService: WindowService,\n  ) {\n    this.emotionCache = createCache({\n      container: windowService.document.head,\n      key: 'loculus-tools',\n      nonce: config.nonce,\n      prepend: !!config.nonce,\n      stylisPlugins: [],\n    });\n  }\n}\n"],"mappings":";;;;;;;;;;;;AAgBO,IAAMQ,IAAN,MAA0B;CAC/B;CAEA,YACE,GACA,GACA;EACA,KAAK,eAAeL,EAAY;GAC9B,WAAWM,EAAc,SAAS;GAClC,KAAK;GACL,OAAOC,EAAO;GACd,SAAS,CAAC,CAACA,EAAO;GAClB,eAAe,CAAC;EAClB,CAAC;CACH;AACF;;CAhBCC,EAAU;CAKNV,EAAA,GAAAW,EAAOC,CAAY,CAAA;CACnBZ,EAAA,GAAAW,EAAOE,CAAoB,CAAA"}

package/dist/_chunks/decorate.js

@@ -0,0 +1,9 @@
+//#region \0@oxc-project+runtime@0.153.0/helpers/esm/decorate.js
+function e(e, t, n, r) {
+	var i = arguments.length, a = i < 3 ? t : r === null ? r = Object.getOwnPropertyDescriptor(t, n) : r, o;
+	if (typeof Reflect == "object" && typeof Reflect.decorate == "function") a = Reflect.decorate(e, t, n, r);
+	else for (var s = e.length - 1; s >= 0; s--) (o = e[s]) && (a = (i < 3 ? o(a) : i > 3 ? o(t, n, a) : o(t, n)) || a);
+	return i > 3 && a && Object.defineProperty(t, n, a), a;
+}
+//#endregion
+export { e as t };

package/dist/classes/services/EmotionCacheService/EmotionCacheService.d.ts

@@ -0,0 +1,7 @@
+import { EmotionCache } from '@emotion/cache';
+import { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';
+import { ConfigBase } from '../../../models/config.models';
+export declare class EmotionCacheService {
+    readonly emotionCache: EmotionCache;
+    constructor(config: ConfigBase, windowService: WindowService);
+}

package/dist/classes/services/EmotionCacheService/index.d.ts

@@ -0,0 +1 @@
+export * from './EmotionCacheService';

package/dist/classes/services/EmotionCacheService/index.js

@@ -0,0 +1 @@
+export { t as EmotionCacheService } from "../../../_chunks/EmotionCacheService.js";

package/dist/classes/services/FastaDataEventBusService/FastaDataEventBusService.d.ts

@@ -4,7 +4,5 @@ export type Event = {
     onShowImportDialog: string | undefined;
 };
 export declare class FastaDataEventBusService extends EventBusAbstract<Event> {
-    private static __instance;
-    private constructor();
-    static getInstance(): FastaDataEventBusService;
+    constructor();
 }

package/dist/classes/services/FastaDataEventBusService/index.js

@@ -1,16 +1,14 @@
-import { EventBusAbstract as e } from "@gen-epix/ui-core/classes/abstracts/EventBusAbstract";
-import { HmrUtil as t } from "@gen-epix/ui-core/utils/HmrUtil";
+import { t as e } from "../../../_chunks/decorate.js";
+import { singleton as t } from "tsyringe";
+import { EventBusAbstract as n } from "@gen-epix/ui-core/classes/abstracts/EventBusAbstract";
 //#region src/classes/services/FastaDataEventBusService/FastaDataEventBusService.ts
-var n = class n extends e {
-	static __instance;
+var r = class extends n {
 	constructor() {
 		super();
 	}
-	static getInstance() {
-		return n.__instance = t.getHmrSingleton("fastaDataEventBusService", n.__instance, () => new n()), n.__instance;
-	}
 };
+r = e([t()], r);
 //#endregion
-export { n as FastaDataEventBusService };
+export { r as FastaDataEventBusService };
 
 //# sourceMappingURL=index.js.map

package/dist/classes/services/FastaDataEventBusService/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":["FastaDataEventBusService","EventBusAbstract","HmrUtil"],"sources":["../../../../src/classes/services/FastaDataEventBusService/FastaDataEventBusService.ts"],"sourcesContent":["import { EventBusAbstract } from '@gen-epix/ui-core/classes/abstracts/EventBusAbstract';\nimport { HmrUtil } from '@gen-epix/ui-core/utils/HmrUtil';\n\n\nexport type Event = {\n  onCloseImportDialog: undefined;\n  onShowImportDialog: string | undefined;\n};\n\nexport class FastaDataEventBusService extends EventBusAbstract<Event> {\n  private static __instance: FastaDataEventBusService;\n\n\n  private constructor() {\n    super();\n  }\n\n  public static getInstance(): FastaDataEventBusService {\n    FastaDataEventBusService.__instance = HmrUtil.getHmrSingleton('fastaDataEventBusService', FastaDataEventBusService.__instance, () => new FastaDataEventBusService());\n    return FastaDataEventBusService.__instance;\n  }\n}\n"],"mappings":";;;AASA,IAAaA,IAAb,MAAaA,UAAiCC,EAAwB;CACpE,OAAe;CAGf,cAAsB;EACpB,MAAM;CACR;CAEA,OAAc,cAAwC;EAEpD,OADA,EAAyB,aAAaC,EAAQ,gBAAgB,4BAA4BF,EAAyB,kBAAkB,IAAIA,EAAyB,CAAC,GAC5JA,EAAyB;CAClC;AACF"}
+{"version":3,"file":"index.js","names":["_decorate","__decorate","FastaDataEventBusService","EventBusAbstract","singleton"],"sources":["../../../../src/classes/services/FastaDataEventBusService/FastaDataEventBusService.ts"],"sourcesContent":["import { EventBusAbstract } from '@gen-epix/ui-core/classes/abstracts/EventBusAbstract';\nimport { singleton } from 'tsyringe';\n\n\nexport type Event = {\n  onCloseImportDialog: undefined;\n  onShowImportDialog: string | undefined;\n};\n\n@singleton()\nexport class FastaDataEventBusService extends EventBusAbstract<Event> {\n  public constructor() {\n    super();\n  }\n}\n"],"mappings":";;;;AAUO,IAAME,IAAN,cAAuCC,EAAwB;CACpE,cAAqB;EACnB,MAAM;CACR;AACF;AALC,IAAAH,EAAA,CAAAI,EAAU,CAAA,GAAAF,CAAA"}

package/dist/components/app/App/App.d.ts

@@ -0,0 +1,6 @@
+import { DependencyContainer } from 'tsyringe';
+import { PropsWithChildren } from 'react';
+export type AppProps = PropsWithChildren<{
+    readonly container: DependencyContainer;
+}>;
+export declare const App: ({ children, container }: AppProps) => import('react').JSX.Element;

package/dist/components/app/App/index.d.ts

@@ -0,0 +1 @@
+export * from './App';

package/dist/components/app/App/index.js

@@ -0,0 +1,104 @@
+import { DependencyContainerUtil as e } from "../../../utils/DependencyContainerUtil/index.js";
+import { PageCommonContextProvider as t } from "../../../context/pageCommonContext/index.js";
+import { CommonConfigContextProvider as n } from "../../../context/commonConfigContext/index.js";
+import { ErrorPage as r } from "../../../pages/ErrorPage/index.js";
+import { I18nWrapper as i } from "../../ui/I18nWrapper/index.js";
+import { t as a } from "../../../_chunks/EmotionCacheService.js";
+import { CssBaseline as o, ThemeProvider as s } from "@mui/material";
+import { jsx as c, jsxs as l } from "react/jsx-runtime";
+import { Component as u, createContext as d, createElement as f, useMemo as p } from "react";
+import { CacheProvider as m } from "@emotion/react";
+//#region ../../../node_modules/.pnpm/react-error-boundary@6.1.6_@types+react@19.3.0_react@19.3.0/node_modules/react-error-boundary/dist/react-error-boundary.js
+var h = d(null);
+function g({ children: e, didCatch: t, error: n, resetErrorBoundary: r }) {
+	let i = p(() => ({
+		didCatch: t,
+		error: n,
+		resetErrorBoundary: r
+	}), [
+		t,
+		n,
+		r
+	]);
+	return f(h.Provider, { value: i }, e);
+}
+var _ = {
+	didCatch: !1,
+	error: null
+}, v = class extends u {
+	constructor(e) {
+		super(e), this.resetErrorBoundary = this.resetErrorBoundary.bind(this), this.state = _;
+	}
+	static getDerivedStateFromError(e) {
+		return {
+			didCatch: !0,
+			error: e
+		};
+	}
+	resetErrorBoundary(...e) {
+		let { didCatch: t } = this.state;
+		t && (this.props.onReset?.({
+			args: e,
+			reason: "imperative-api"
+		}), this.setState(_));
+	}
+	componentDidCatch(e, t) {
+		this.props.onError?.(e, t);
+	}
+	componentDidUpdate(e, t) {
+		let { didCatch: n } = this.state, { resetKeys: r } = this.props;
+		n && t.didCatch && y(e.resetKeys, r) && (this.props.onReset?.({
+			next: r,
+			prev: e.resetKeys,
+			reason: "keys"
+		}), this.setState(_));
+	}
+	render() {
+		let { children: e, fallbackRender: t, FallbackComponent: n, fallback: r } = this.props, { didCatch: i, error: a } = this.state, o = e;
+		if (i) {
+			let e = {
+				error: a,
+				resetErrorBoundary: this.resetErrorBoundary
+			};
+			if (typeof t == "function") o = t(e);
+			else if (n) o = f(n, e);
+			else if ("fallback" in this.props) o = r;
+			else throw a;
+		}
+		return f(g, {
+			didCatch: i,
+			error: a,
+			resetErrorBoundary: this.resetErrorBoundary
+		}, o);
+	}
+};
+function y(e = [], t = []) {
+	return e.length !== t.length || e.some((e, n) => !Object.is(e, t[n]));
+}
+//#endregion
+//#region src/components/app/App/App.tsx
+var b = ({ children: u, container: d }) => {
+	let f = e.resolveConfig(d), { pageConfig: p } = f, h = f.getTouchIconUrl?.();
+	h && document.querySelector("link[rel=\"icon\"]")?.setAttribute("href", h);
+	let g = d.resolve(a).emotionCache;
+	return /* @__PURE__ */ c(n, {
+		container: d,
+		children: /* @__PURE__ */ c(m, {
+			value: g,
+			children: /* @__PURE__ */ l(s, {
+				theme: f.theme,
+				children: [/* @__PURE__ */ c(o, {}), /* @__PURE__ */ c(v, {
+					FallbackComponent: r,
+					children: /* @__PURE__ */ c(i, { children: /* @__PURE__ */ c(t, {
+						...p,
+						children: u
+					}) })
+				})]
+			})
+		})
+	});
+};
+//#endregion
+export { b as App };
+
+//# sourceMappingURL=index.js.map

package/dist/components/app/App/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","names":["l","h","i","y","ErrorBoundary","EmotionCacheService","f","createContext","m","r","e","t","o","n","useMemo","createElement","d","C","Component","g","s","c","u","App","config","DependencyContainerUtil","container","touchIconUrl","emotionCache","CommonConfigContextProvider","CacheProvider","ThemeProvider","CssBaseline","ErrorPage","I18nWrapper","PageCommonContextProvider","pageConfig"],"sources":["../../../../../../../node_modules/.pnpm/react-error-boundary@6.1.6_@types+react@19.3.0_react@19.3.0/node_modules/react-error-boundary/dist/react-error-boundary.js","../../../../src/components/app/App/App.tsx"],"sourcesContent":["\"use client\";\nimport { createContext as l, useMemo as h, createElement as i, Component as y, useContext as p, useState as E, forwardRef as B } from \"react\";\nconst f = l(null);\nfunction m({\n  children: r,\n  didCatch: e,\n  error: t,\n  resetErrorBoundary: o\n}) {\n  const n = h(\n    () => ({ didCatch: e, error: t, resetErrorBoundary: o }),\n    [e, t, o]\n  );\n  return i(f.Provider, { value: n }, r);\n}\nconst d = {\n  didCatch: !1,\n  error: null\n};\nclass C extends y {\n  constructor(e) {\n    super(e), this.resetErrorBoundary = this.resetErrorBoundary.bind(this), this.state = d;\n  }\n  static getDerivedStateFromError(e) {\n    return { didCatch: !0, error: e };\n  }\n  resetErrorBoundary(...e) {\n    const { didCatch: t } = this.state;\n    t && (this.props.onReset?.({\n      args: e,\n      reason: \"imperative-api\"\n    }), this.setState(d));\n  }\n  componentDidCatch(e, t) {\n    this.props.onError?.(e, t);\n  }\n  componentDidUpdate(e, t) {\n    const { didCatch: o } = this.state, { resetKeys: n } = this.props;\n    o && t.didCatch && g(e.resetKeys, n) && (this.props.onReset?.({\n      next: n,\n      prev: e.resetKeys,\n      reason: \"keys\"\n    }), this.setState(d));\n  }\n  render() {\n    const { children: e, fallbackRender: t, FallbackComponent: o, fallback: n } = this.props, { didCatch: s, error: a } = this.state;\n    let c = e;\n    if (s) {\n      const u = {\n        error: a,\n        resetErrorBoundary: this.resetErrorBoundary\n      };\n      if (typeof t == \"function\")\n        c = t(u);\n      else if (o)\n        c = i(o, u);\n      else if (\"fallback\" in this.props)\n        c = n;\n      else\n        throw a;\n    }\n    return i(\n      m,\n      {\n        didCatch: s,\n        error: a,\n        resetErrorBoundary: this.resetErrorBoundary\n      },\n      c\n    );\n  }\n}\nfunction g(r = [], e = []) {\n  return r.length !== e.length || r.some((t, o) => !Object.is(t, e[o]));\n}\nfunction x(r) {\n  return r !== null && typeof r == \"object\" && \"didCatch\" in r && typeof r.didCatch == \"boolean\" && \"error\" in r && \"resetErrorBoundary\" in r && typeof r.resetErrorBoundary == \"function\";\n}\nfunction b(r) {\n  if (!x(r))\n    throw new Error(\"ErrorBoundaryContext not found\");\n}\nfunction S() {\n  const r = p(f);\n  b(r);\n  const { error: e, resetErrorBoundary: t } = r, [o, n] = E({\n    error: null,\n    hasError: !1\n  }), s = h(\n    () => ({\n      error: e,\n      resetBoundary: () => {\n        t(), n({ error: null, hasError: !1 });\n      },\n      showBoundary: (a) => n({\n        error: a,\n        hasError: !0\n      })\n    }),\n    [e, t]\n  );\n  if (o.hasError)\n    throw o.error;\n  return s;\n}\nfunction w(r) {\n  switch (typeof r) {\n    case \"object\": {\n      if (r !== null && \"message\" in r && typeof r.message == \"string\")\n        return r.message;\n      break;\n    }\n    case \"string\":\n      return r;\n  }\n}\nfunction R(r, e) {\n  const t = B(\n    (n, s) => i(\n      C,\n      e,\n      i(r, { ...n, ref: s })\n    )\n  ), o = r.displayName || r.name || \"Unknown\";\n  return t.displayName = `withErrorBoundary(${o})`, t;\n}\nexport {\n  C as ErrorBoundary,\n  f as ErrorBoundaryContext,\n  w as getErrorMessage,\n  S as useErrorBoundary,\n  R as withErrorBoundary\n};\n//# sourceMappingURL=react-error-boundary.js.map\n","import type { DependencyContainer } from 'tsyringe';\nimport { CacheProvider } from '@emotion/react';\nimport {\n  CssBaseline,\n  ThemeProvider,\n} from '@mui/material';\nimport { ErrorBoundary } from 'react-error-boundary';\nimport type { PropsWithChildren } from 'react';\n\nimport { EmotionCacheService } from '../../../classes/services/EmotionCacheService';\nimport type { ConfigBase } from '../../../models/config.models';\nimport { DependencyContainerUtil } from '../../../utils/DependencyContainerUtil';\nimport { CommonConfigContextProvider } from '../../../context/commonConfigContext';\nimport { ErrorPage } from '../../../pages/ErrorPage';\nimport { I18nWrapper } from '../../ui/I18nWrapper';\nimport { PageCommonContextProvider } from '../../../context/pageCommonContext';\n\nexport type AppProps = PropsWithChildren<{\n  readonly container: DependencyContainer;\n}>;\n\nexport const App = ({ children, container }: AppProps) => {\n  const config = DependencyContainerUtil.resolveConfig<ConfigBase>(container);\n  const { pageConfig } = config;\n  const touchIconUrl = config.getTouchIconUrl?.();\n  if (touchIconUrl) {\n    document.querySelector('link[rel=\"icon\"]')?.setAttribute('href', touchIconUrl);\n  }\n\n  const emotionCache = container.resolve(EmotionCacheService).emotionCache;\n\n  return (\n    <CommonConfigContextProvider container={container}>\n      <CacheProvider value={emotionCache}>\n        <ThemeProvider theme={config.theme}>\n          <CssBaseline />\n          <ErrorBoundary FallbackComponent={ErrorPage}>\n            <I18nWrapper>\n              <PageCommonContextProvider {...pageConfig}>\n                {children}\n              </PageCommonContextProvider>\n            </I18nWrapper>\n          </ErrorBoundary>\n        </ThemeProvider>\n      </CacheProvider>\n    </CommonConfigContextProvider>\n  );\n};\n"],"ignoreList":[0],"mappings":";;;;;;;;;;;AAEA,IAAMM,IAAIN,EAAE,IAAI;AAChB,SAASQ,EAAE,EACT,UAAUC,GACV,UAAUC,GACV,OAAOC,GACP,oBAAoBC,KACnB;CACD,IAAMC,IAAIZ,SACD;EAAE,UAAUS;EAAG,OAAOC;EAAG,oBAAoBC;CAAE,IACtD;EAACF;EAAGC;EAAGC;CAAC,CACV;CACA,OAAOV,EAAEI,EAAE,UAAU,EAAE,OAAOO,EAAE,GAAGJ,CAAC;AACtC;AACA,IAAMO,IAAI;CACR,UAAU,CAAC;CACX,OAAO;AACT,GACMC,IAAN,cAAgBd,EAAE;CAChB,YAAY,GAAG;EACb,MAAM,CAAC,GAAG,KAAK,qBAAqB,KAAK,mBAAmB,KAAK,IAAI,GAAG,KAAK,QAAQa;CACvF;CACA,OAAO,yBAAyB,GAAG;EACjC,OAAO;GAAE,UAAU,CAAC;GAAG,OAAO;EAAE;CAClC;CACA,mBAAmB,GAAG,GAAG;EACvB,IAAM,EAAE,UAAU,MAAM,KAAK;EAC7B,MAAM,KAAK,MAAM,UAAU;GACzB,MAAM;GACN,QAAQ;EACV,CAAC,GAAG,KAAK,SAASA,CAAC;CACrB;CACA,kBAAkB,GAAG,GAAG;EACtB,KAAK,MAAM,UAAU,GAAG,CAAC;CAC3B;CACA,mBAAmB,GAAG,GAAG;EACvB,IAAM,EAAE,UAAUJ,MAAM,KAAK,OAAO,EAAE,WAAWC,MAAM,KAAK;EAC5D,KAAK,EAAE,YAAYM,EAAE,EAAE,WAAWN,CAAC,MAAM,KAAK,MAAM,UAAU;GAC5D,MAAMA;GACN,MAAM,EAAE;GACR,QAAQ;EACV,CAAC,GAAG,KAAK,SAASG,CAAC;CACrB;CACA,SAAS;EACP,IAAM,EAAE,UAAU,GAAG,gBAAgB,GAAG,mBAAmBJ,GAAG,UAAUC,MAAM,KAAK,OAAO,EAAE,UAAUO,GAAG,OAAO,MAAM,KAAK,OACvHC,IAAI;EACR,IAAID,GAAG;GACL,IAAME,IAAI;IACR,OAAO;IACP,oBAAoB,KAAK;GAC3B;GACA,IAAI,OAAO,KAAK,YACd,IAAI,EAAEA,CAAC;QACJ,IAAIV,GACP,IAAIV,EAAEU,GAAGU,CAAC;QACP,IAAI,cAAc,KAAK,OAC1B,IAAIT;QAEJ,MAAM;EACV;EACA,OAAOX,EACLM,GACA;GACE,UAAUY;GACV,OAAO;GACP,oBAAoB,KAAK;EAC3B,GACAC,CACF;CACF;AACF;AACA,SAASF,EAAE,IAAI,CAAC,GAAG,IAAI,CAAC,GAAG;CACzB,OAAOV,EAAE,WAAWC,EAAE,UAAUD,EAAE,MAAM,GAAG,MAAM,CAAC,OAAO,GAAGE,GAAGD,EAAEE,EAAE,CAAC;AACtE;;;ACrDA,IAAaW,KAAO,EAAE,aAAU,mBAA0B;CACxD,IAAMC,IAASC,EAAwB,cAA0BC,CAAS,GACpE,EAAE,kBAAeF,GACjBG,IAAeH,EAAO,kBAAkB;CAC9C,AAAIG,KACF,SAAS,cAAc,oBAAkB,CAAC,EAAE,aAAa,QAAQA,CAAY;CAG/E,IAAMC,IAAeF,EAAU,QAAQrB,CAAmB,CAAC,CAAC;CAE5D,OACE,kBAACwB,GAAD;EAAwC;EACtC,UAAA,kBAACC,GAAD;GAAe,OAAOF;GACpB,UAAA,kBAACG,GAAD;IAAe,OAAOP,EAAO;IAA7B,UAAA,CACE,kBAACQ,GAAD,CAAc,CAAA,GACd,kBAAC5B,GAAD;KAAe,mBAAmB6B;KAChC,UAAA,kBAACC,GAAD,EAAA,UACE,kBAACC,GAAD;MAA2B,GAAIC;MAC5B;KACwB,CAAA,EAChB,CAAA;IACA,CAAA,CACF;;EACF,CAAA;CACY,CAAA;AAEjC"}

package/dist/{_chunks/FastaDataImportDialog.js → components/fasta/FastaDataImportDialog/index.js}

@@ -5,7 +5,7 @@ import m from "@mui/icons-material/Biotech";
 import h from "@mui/icons-material/TableChart";
 import { FileDropZone as g } from "@gen-epix/ui-core-components/components/FileDropZone";
 import { withDialog as _ } from "@gen-epix/ui-core-components/hoc/withDialog";
-//#region src/components/FastaDataImportDialog/FastaDataImportDialog.tsx
+//#region src/components/fasta/FastaDataImportDialog/FastaDataImportDialog.tsx
 var v = _(({ extraActions: _, onActionsChange: v, onClose: y, onDataChange: b, onDisableBackdropClickChange: x, onError: S, onNoCloseButtonChange: C, openProps: w }) => {
 	let [T, E] = p(0), [D, O] = p(null), [k, A] = p(""), [j, M] = p(""), [N, ee] = p(0), [P, F] = p(null), [I, L] = p(""), [R, z] = p(""), [B, V] = p(!1), [H, U] = p(null);
 	f(() => {
@@ -304,6 +304,6 @@ var v = _(({ extraActions: _, onActionsChange: v, onClose: y, onDataChange: b, o
 	testId: "FastaDataImportDialog"
 });
 //#endregion
-export { v as t };
+export { v as FastaDataImportDialog };
 
-//# sourceMappingURL=FastaDataImportDialog.js.map
+//# sourceMappingURL=index.js.map

package/dist/components/fasta/FastaDataImportDialog/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","names":["_Fragment","DnaIcon","TableChartIcon","FastaDataImportDialog","withDialog","fastaTab","setFastaTab","useState","fastaFile","setFastaFile","fastaUrl","setFastaUrl","fastaText","setFastaText","metadataTab","setMetadataTab","metadataFile","setMetadataFile","metadataUrl","setMetadataUrl","metadataText","setMetadataText","isLoading","setIsLoading","errorMsg","setErrorMsg","useEffect","openProps","onNoCloseButtonChange","onDisableBackdropClickChange","onCloseError","useCallback","onChangeFastaTab","value","onChangeMetadataTab","onFileSelectedFasta","file","onFileSelectedMetadata","onChangeFastaUrl","event","onChangeFastaText","onChangeMetadataUrl","onChangeMetadataText","onClickLoadData","fastaContent","res","metadataContent","onDataChange","onClose","err","onError","actions","CircularProgress","extraActions","onActionsChange","Fragment","Alert","Box","Paper","Typography","Tabs","Tab","FileDropZone","TextField"],"sources":["../../../../src/components/fasta/FastaDataImportDialog/FastaDataImportDialog.tsx"],"sourcesContent":["import type {\n  ChangeEvent,\n  ReactElement,\n  SyntheticEvent,\n} from 'react';\nimport {\n  useCallback,\n  useEffect,\n  useState,\n} from 'react';\nimport {\n  Alert,\n  Box,\n  CircularProgress,\n  Paper,\n  Tab,\n  Tabs,\n  TextField,\n  Typography,\n} from '@mui/material';\nimport DnaIcon from '@mui/icons-material/Biotech';\nimport TableChartIcon from '@mui/icons-material/TableChart';\nimport { FileDropZone } from '@gen-epix/ui-core-components/components/FileDropZone';\nimport type {\n  WithDialogRefMethods,\n  WithDialogRenderProps,\n} from '@gen-epix/ui-core-components/hoc/withDialog';\nimport { withDialog } from '@gen-epix/ui-core-components/hoc/withDialog';\nimport type { DialogAction } from '@gen-epix/ui-core-components/components/Dialog';\n\n\nenum FASTA_TAB {\n  DROP = 0,\n  URL = 1,\n  PASTE = 2,\n}\n\nenum META_DATA_TAB {\n  DROP = 0,\n  URL = 1,\n  PASTE = 2,\n}\n\nexport interface FastaDataImportDialogOpenProps {\n  initialErrorMessage?: string;\n}\n\nexport interface FastaDataImportDialogProps extends WithDialogRenderProps<FastaDataImportDialogOpenProps> {\n  extraActions?: DialogAction[];\n  onDataChange: (fasta: string, metaData?: string) => void;\n  onError: (error: unknown) => void;\n}\n\nexport type FastaDataImportDialogRefMethods = WithDialogRefMethods<FastaDataImportDialogProps, FastaDataImportDialogOpenProps>;\n\nexport const FastaDataImportDialog = withDialog<FastaDataImportDialogProps, FastaDataImportDialogOpenProps>((\n  {\n    extraActions,\n    onActionsChange,\n    onClose,\n    onDataChange,\n    onDisableBackdropClickChange,\n    onError,\n    onNoCloseButtonChange,\n    openProps,\n  }: FastaDataImportDialogProps,\n): ReactElement => {\n  // FASTA state\n  const [fastaTab, setFastaTab] = useState(FASTA_TAB.DROP);\n  const [fastaFile, setFastaFile] = useState<FileList | null>(null);\n  const [fastaUrl, setFastaUrl] = useState('');\n  const [fastaText, setFastaText] = useState('');\n\n  // Metadata state\n  const [metadataTab, setMetadataTab] = useState(META_DATA_TAB.DROP);\n  const [metadataFile, setMetadataFile] = useState<FileList | null>(null);\n  const [metadataUrl, setMetadataUrl] = useState('');\n  const [metadataText, setMetadataText] = useState('');\n\n  const [isLoading, setIsLoading] = useState(false);\n  const [errorMsg, setErrorMsg] = useState<null | string>(null);\n\n  useEffect(() => {\n    setErrorMsg(openProps?.initialErrorMessage ?? null);\n  }, [openProps]);\n\n  useEffect(() => {\n    if (onNoCloseButtonChange) {\n      onNoCloseButtonChange(!!openProps?.initialErrorMessage);\n    }\n    if (onDisableBackdropClickChange) {\n      onDisableBackdropClickChange(!!openProps?.initialErrorMessage);\n    }\n  }, [onDisableBackdropClickChange, onNoCloseButtonChange, openProps?.initialErrorMessage]);\n\n  const onCloseError = useCallback(() => setErrorMsg(null), []);\n  const onChangeFastaTab = useCallback((_event: SyntheticEvent, value: number) => {\n    setFastaTab(value);\n  }, []);\n  const onChangeMetadataTab = useCallback((_event: SyntheticEvent, value: number) => {\n    setMetadataTab(value);\n  }, []);\n  const onFileSelectedFasta = useCallback((file: FileList) => setFastaFile(file), []);\n  const onFileSelectedMetadata = useCallback((file: FileList) => setMetadataFile(file), []);\n  const onChangeFastaUrl = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n    setFastaUrl(event.target.value);\n  }, []);\n  const onChangeFastaText = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n    setFastaText(event.target.value);\n  }, []);\n  const onChangeMetadataUrl = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n    setMetadataUrl(event.target.value);\n  }, []);\n  const onChangeMetadataText = useCallback((event: ChangeEvent<HTMLInputElement>) => {\n    setMetadataText(event.target.value);\n  }, []);\n\n  const onClickLoadData = useCallback(async () => {\n    setErrorMsg(null);\n    setIsLoading(true);\n\n    try {\n      // 1. Resolve FASTA content\n      let fastaContent = '';\n      if (fastaTab === FASTA_TAB.DROP && fastaFile) {\n        fastaContent = await fastaFile[0].text();\n      } else if (fastaTab === FASTA_TAB.URL && fastaUrl.trim()) {\n        const res = await fetch(fastaUrl.trim());\n        if (!res.ok) {\n          throw new Error(`Failed to fetch FASTA from URL (${res.status} ${res.statusText})`);\n        }\n        fastaContent = await res.text();\n      } else if (fastaTab === FASTA_TAB.PASTE && fastaText.trim()) {\n        fastaContent = fastaText.trim();\n      }\n\n      if (!fastaContent?.trim()) {\n        throw new Error('Please provide FASTA sequence data via file, URL, or paste.');\n      }\n\n      // 2. Resolve Metadata content (optional)\n      let metadataContent = '';\n      if (metadataTab === META_DATA_TAB.DROP && metadataFile) {\n        metadataContent = await metadataFile[0].text();\n      } else if (metadataTab === META_DATA_TAB.URL && metadataUrl.trim()) {\n        const res = await fetch(metadataUrl.trim());\n        if (!res.ok) {\n          throw new Error(`Failed to fetch Metadata from URL (${res.status} ${res.statusText})`);\n        }\n        metadataContent = await res.text();\n      } else if (metadataTab === META_DATA_TAB.PASTE && metadataText.trim()) {\n        metadataContent = metadataText.trim();\n      }\n      onDataChange(fastaContent, metadataContent);\n      if (onClose) {\n        onClose();\n      }\n    } catch (err: unknown) {\n      console.error('Data import failed:', err);\n      onError(err);\n    } finally {\n      setIsLoading(false);\n    }\n  }, [fastaFile, fastaTab, fastaText, fastaUrl, metadataFile, metadataTab, metadataText, metadataUrl, onClose, onDataChange, onError]);\n\n\n  useEffect(() => {\n    const actions: DialogAction[] = [\n      {\n        disabled: isLoading,\n        label: isLoading ? 'Processing...' : 'Load & Calculate',\n        onClick: onClickLoadData,\n        startIcon: isLoading ? (\n          <CircularProgress\n            color={'inherit'}\n            size={18}\n          />\n        ) : undefined,\n        variant: 'contained',\n      },\n    ];\n    if (extraActions?.length) {\n      actions.unshift(...extraActions);\n    }\n    if (onActionsChange) {\n      onActionsChange(actions);\n    }\n  }, [onActionsChange, onClickLoadData, isLoading, extraActions]);\n\n  return (\n    <>\n      {errorMsg && (\n        <Alert\n          onClose={onCloseError}\n          severity={'error'}\n          sx={{\n            marginBottom: 2,\n          }}\n        >\n          {errorMsg}\n        </Alert>\n      )}\n      <Box sx={{ display: 'grid', gap: 3, gridTemplateColumns: { md: '1fr 1fr', xs: '1fr' } }}>\n        {/* FASTA Sequences Group */}\n        <Paper\n          sx={{ borderRadius: 2, p: 2.5 }}\n          variant={'outlined'}\n        >\n          <Box sx={{ alignItems: 'center', display: 'flex', gap: 1, mb: 1.5 }}>\n            <DnaIcon color={'primary'} />\n            <Typography\n              sx={{ fontWeight: 700 }}\n              variant={'subtitle1'}\n            >\n              {'1. FASTA Sequences (Required)'}\n            </Typography>\n          </Box>\n          <Typography\n            color={'text.secondary'}\n            sx={{ display: 'block', mb: 2 }}\n            variant={'caption'}\n          >\n            {'Pre-aligned nucleotide or amino-acid sequence data.'}\n          </Typography>\n          <Tabs\n            onChange={onChangeFastaTab}\n            sx={{ mb: 2, minHeight: 36 }}\n            value={fastaTab}\n          >\n            <Tab\n              label={'File Upload'}\n              sx={{ fontSize: '0.85rem', py: 0.5 }}\n            />\n            <Tab\n              label={'Public URL'}\n              sx={{ fontSize: '0.85rem', py: 0.5 }}\n            />\n            <Tab\n              label={'Direct Paste'}\n              sx={{ fontSize: '0.85rem', py: 0.5 }}\n            />\n          </Tabs>\n          {fastaTab === FASTA_TAB.DROP && (\n            <FileDropZone\n              accept={'.fasta,.fa,.fna,.aln'}\n              files={fastaFile}\n              helperText={'Drag & drop .fasta / .fa alignment file'}\n              onFilesSelected={onFileSelectedFasta}\n            />\n          )}\n          {fastaTab === FASTA_TAB.URL && (\n            <Box sx={{ display: 'flex', flexDirection: 'column', gap: 1.5, justifyContent: 'center', minHeight: 180 }}>\n              <TextField\n                fullWidth\n                helperText={'Enter a publicly accessible URL to a FASTA alignment'}\n                label={'FASTA URL'}\n                onChange={onChangeFastaUrl}\n                placeholder={'https://example.com/sequences.fasta'}\n                value={fastaUrl}\n                variant={'outlined'}\n              />\n            </Box>\n          )}\n          {fastaTab === FASTA_TAB.PASTE && (\n            <Box sx={{ minHeight: 180 }}>\n              <TextField\n                fullWidth\n                label={'Paste FASTA Content'}\n                multiline\n                onChange={onChangeFastaText}\n                placeholder={'>seq1&#10;ACTG...&#10;>seq2&#10;ACTG...'}\n                rows={6}\n                sx={{ fontFamily: 'monospace' }}\n                value={fastaText}\n                variant={'outlined'}\n              />\n            </Box>\n          )}\n        </Paper>\n        {/* TSV Metadata Group */}\n        <Paper\n          sx={{ borderRadius: 2, p: 2.5 }}\n          variant={'outlined'}\n        >\n          <Box sx={{ alignItems: 'center', display: 'flex', gap: 1, mb: 1.5 }}>\n            <TableChartIcon color={'primary'} />\n            <Typography\n              sx={{ fontWeight: 700 }}\n              variant={'subtitle1'}\n            >\n              {'2. TSV Metadata (Optional)'}\n            </Typography>\n          </Box>\n          <Typography\n            color={'text.primary'}\n            sx={{ display: 'block', mb: 2 }}\n            variant={'caption'}\n          >\n            {'Sample attributes for coloring, search & custom leaf labels.'}\n          </Typography>\n          <Tabs\n            onChange={onChangeMetadataTab}\n            sx={{ mb: 2, minHeight: 36 }}\n            value={metadataTab}\n          >\n            <Tab\n              label={'File Upload'}\n              sx={{ fontSize: '0.85rem', py: 0.5 }}\n            />\n            <Tab\n              label={'Public URL'}\n              sx={{ fontSize: '0.85rem', py: 0.5 }}\n            />\n            <Tab\n              label={'Direct Paste'}\n              sx={{ fontSize: '0.85rem', py: 0.5 }}\n            />\n          </Tabs>\n          {metadataTab === META_DATA_TAB.DROP && (\n            <FileDropZone\n              accept={'.tsv,.txt,.csv'}\n              files={metadataFile}\n              label={'TSV Metadata File'}\n              onFilesSelected={onFileSelectedMetadata}\n            />\n          )}\n          {metadataTab === META_DATA_TAB.URL && (\n            <Box sx={{ display: 'flex', flexDirection: 'column', gap: 1.5, justifyContent: 'center', minHeight: 180 }}>\n              <TextField\n                fullWidth\n                helperText={'Enter a publicly accessible URL to a TSV metadata file'}\n                label={'Metadata TSV URL'}\n                onChange={onChangeMetadataUrl}\n                placeholder={'https://example.com/metadata.tsv'}\n                value={metadataUrl}\n                variant={'outlined'}\n              />\n            </Box>\n          )}\n          {metadataTab === META_DATA_TAB.PASTE && (\n            <Box sx={{ minHeight: 180 }}>\n              <TextField\n                fullWidth\n                label={'Paste TSV Content'}\n                multiline\n                onChange={onChangeMetadataText}\n                placeholder={'SampleID&#9;Country&#9;Date&#10;Sample1&#9;NL&#9;2024-01-01'}\n                rows={6}\n                sx={{ fontFamily: 'monospace' }}\n                value={metadataText}\n                variant={'outlined'}\n              />\n            </Box>\n          )}\n        </Paper>\n      </Box>\n    </>\n  );\n}, {\n  defaultTitle: 'Load Phylogenetic Data',\n  fullWidth: true,\n  maxWidth: 'xl',\n  testId: 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package/dist/components/{FastaDataImportDialogLoader → fasta/FastaDataImportDialogLoader}/FastaDataImportDialogLoader.d.ts

@@ -1,8 +1,8 @@
 import { DialogAction } from '@gen-epix/ui-core-components/components/Dialog';
 import { StoreApi } from 'zustand';
-import { FastaDataStore } from '../../stores/fastaDataStore';
+import { FastaDataStore } from '../../../stores/fastaDataStore';
 export type FastaDataImportDialogLoaderProps = {
-    extraActions: DialogAction[];
+    extraActions?: DialogAction[];
     store: StoreApi<FastaDataStore>;
 };
 export declare const FastaDataImportDialogLoader: ({ extraActions, store }: FastaDataImportDialogLoaderProps) => import('react').JSX.Element;

package/dist/components/fasta/FastaDataImportDialogLoader/index.js

@@ -0,0 +1,71 @@
+import { UrlUtil as e } from "../../../utils/UrlUtil/index.js";
+import { ErrorUtil as t } from "../../../utils/ErrorUtil/index.js";
+import { LOADING_STATUS as n } from "../../../models/fasta.models.js";
+import { FastaDataEventBusService as r } from "../../../classes/services/FastaDataEventBusService/index.js";
+import { t as i } from "../../../_chunks/react.js";
+import { FastaDataImportDialog as a } from "../FastaDataImportDialog/index.js";
+import { container as o } from "tsyringe";
+import { Fragment as s, jsx as c } from "react/jsx-runtime";
+import { useCallback as l, useEffect as u, useRef as d } from "react";
+//#region src/components/fasta/FastaDataImportDialogLoader/FastaDataImportDialogLoader.tsx
+var f = ({ extraActions: f, store: p }) => {
+	let m = i(p, (e) => e.setData), h = i(p, (e) => e.setLoadingStatus), g = d(null);
+	u(() => {
+		let e = [o.resolve(r).addEventListener("onShowImportDialog", (e) => {
+			g.current?.open(e ? { initialErrorMessage: e } : void 0);
+		}), o.resolve(r).addEventListener("onCloseImportDialog", () => {
+			g.current?.close();
+		})];
+		return () => {
+			e.forEach((e) => e());
+		};
+	}, []), u(() => {
+		let e = new URLSearchParams(window.location.search), t = e.get("input-fasta"), i = e.get("input-metadata");
+		(async () => {
+			if (t) {
+				h(n.LOADING);
+				try {
+					let e = await fetch(t);
+					if (!e.ok) throw Error(`FASTA fetch failed (${e.status})`);
+					let r = await e.text();
+					if (!r.trim()) throw h(n.ERROR), Error("The input-fasta URL returned no sequence data. Check that the URL and requested accession(s) are correct.");
+					let a;
+					if (i) try {
+						let e = await fetch(i);
+						e.ok && (a = await e.text());
+					} catch (e) {
+						console.warn("[App] Failed to auto-fetch metadata:", e);
+					}
+					await m(r, a);
+				} catch (e) {
+					console.error("[App] Failed to auto-load FASTA:", e);
+					let t = e instanceof Error ? e.message : "Failed to auto-load FASTA from the provided URL.";
+					o.resolve(r).emit("onShowImportDialog", t);
+				}
+			} else o.resolve(r).emit("onShowImportDialog");
+		})();
+	}, [m, h]);
+	let _ = l((e) => {
+		g.current?.close(), o.resolve(r).emit("onShowImportDialog", e);
+	}, []), v = l(async (n, r) => {
+		try {
+			await m(n, r), g.current?.close();
+		} catch (e) {
+			_(t.getErrorMessage(e, "Unknown error"));
+		} finally {
+			e.clearSearchParams();
+		}
+	}, [_, m]), y = l((e) => {
+		_(t.getErrorMessage(e, "Unknown error"));
+	}, [_]);
+	return /* @__PURE__ */ c(s, { children: /* @__PURE__ */ c(a, {
+		extraActions: f,
+		onDataChange: v,
+		onError: y,
+		ref: g
+	}) });
+};
+//#endregion
+export { f as FastaDataImportDialogLoader };
+
+//# sourceMappingURL=index.js.map

package/dist/components/fasta/FastaDataImportDialogLoader/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","names":["_Fragment","useStore","FastaDataImportDialogLoader","setData","store","state","setLoadingStatus","fastaDataImportDialogRef","useRef","useEffect","removers","container","FastaDataEventBusService","initialErrorMessage","remove","urlParams","inputFastaUrl","inputMetadataUrl","LOADING_STATUS","fastaRes","fastaText","metaText","metaRes","metaErr","fastaErr","message","handleError","useCallback","errorMessage","onDataChange","fastaContent","metadataContent","ErrorUtil","onError","Fragment","FastaDataImportDialog"],"sources":["../../../../src/components/fasta/FastaDataImportDialogLoader/FastaDataImportDialogLoader.tsx"],"sourcesContent":["import { container } from 'tsyringe';\nimport type { DialogAction } from '@gen-epix/ui-core-components/components/Dialog';\nimport {\n  useCallback,\n  useEffect,\n  useRef,\n} from 'react';\nimport type { StoreApi } from 'zustand';\nimport { useStore } from 'zustand';\n\nimport { FastaDataEventBusService } from '../../../classes/services/FastaDataEventBusService';\nimport { LOADING_STATUS } from '../../../models/fasta.models';\nimport type { FastaDataStore } from '../../../stores/fastaDataStore';\nimport { UrlUtil } from '../../../utils/UrlUtil';\nimport type { FastaDataImportDialogRefMethods } from '../FastaDataImportDialog';\nimport { FastaDataImportDialog } from '../FastaDataImportDialog';\nimport { ErrorUtil } from '../../../utils/ErrorUtil';\n\n\nexport type FastaDataImportDialogLoaderProps = {\n  extraActions?: DialogAction[];\n  store: StoreApi<FastaDataStore>;\n};\n\nexport const FastaDataImportDialogLoader = ({ extraActions, store }: FastaDataImportDialogLoaderProps) => {\n  const setData = useStore(store, (state) => state.setData);\n  const setLoadingStatus = useStore(store, (state) => state.setLoadingStatus);\n  const fastaDataImportDialogRef = useRef<FastaDataImportDialogRefMethods>(null);\n\n  useEffect(() => {\n    const removers = [\n      // eslint-disable-next-line @eslint-react/web-api-no-leaked-event-listener\n      container.resolve(FastaDataEventBusService).addEventListener('onShowImportDialog', (initialErrorMessage?: string) => {\n        fastaDataImportDialogRef.current?.open(initialErrorMessage ? { initialErrorMessage } : undefined);\n      }),\n      // eslint-disable-next-line @eslint-react/web-api-no-leaked-event-listener\n      container.resolve(FastaDataEventBusService).addEventListener('onCloseImportDialog', () => {\n        fastaDataImportDialogRef.current?.close();\n      }),\n    ];\n    return () => {\n      removers.forEach((remove) => remove());\n    };\n  }, []);\n\n  useEffect(() => {\n    // Scan URL parameters for deep-linking\n    const urlParams = new URLSearchParams(window.location.search);\n    const inputFastaUrl = urlParams.get('input-fasta');\n    const inputMetadataUrl = urlParams.get('input-metadata');\n\n    const handleDeepLinking = async () => {\n      if (inputFastaUrl) {\n        setLoadingStatus(LOADING_STATUS.LOADING);\n        try {\n          const fastaRes = await fetch(inputFastaUrl);\n          if (!fastaRes.ok) {\n            throw new Error(`FASTA fetch failed (${fastaRes.status})`);\n          }\n          const fastaText = await fastaRes.text();\n\n          if (!fastaText.trim()) {\n            setLoadingStatus(LOADING_STATUS.ERROR);\n            throw new Error('The input-fasta URL returned no sequence data. Check that the URL and requested accession(s) are correct.');\n          }\n\n          let metaText: string | undefined;\n          if (inputMetadataUrl) {\n            try {\n              const metaRes = await fetch(inputMetadataUrl);\n              if (metaRes.ok) {\n                metaText = await metaRes.text();\n              }\n            } catch (metaErr) {\n              console.warn('[App] Failed to auto-fetch metadata:', metaErr);\n            }\n          }\n\n          await setData(fastaText, metaText);\n        } catch (fastaErr) {\n          console.error('[App] Failed to auto-load FASTA:', fastaErr);\n          const message = fastaErr instanceof Error ? fastaErr.message : 'Failed to auto-load FASTA from the provided URL.';\n          container.resolve(FastaDataEventBusService).emit('onShowImportDialog', message);\n        }\n      } else {\n        // PV1-02: Show data loading modal if no data provided via URL query params\n        container.resolve(FastaDataEventBusService).emit('onShowImportDialog');\n      }\n    };\n\n    void handleDeepLinking();\n  }, [setData, setLoadingStatus]);\n\n  const handleError = useCallback((errorMessage: string) => {\n    fastaDataImportDialogRef.current?.close();\n    container.resolve(FastaDataEventBusService).emit('onShowImportDialog', errorMessage);\n  }, []);\n\n  const onDataChange = useCallback(async (fastaContent: string, metadataContent?: string) => {\n    try {\n      await setData(fastaContent, metadataContent);\n      fastaDataImportDialogRef.current?.close();\n    } catch (e) {\n      handleError(ErrorUtil.getErrorMessage(e, 'Unknown error'));\n    } finally {\n      // clear any search params from the URL\n      UrlUtil.clearSearchParams();\n    }\n  }, [handleError, setData]);\n\n  const onError = useCallback((errorMessage: unknown) => {\n    handleError(ErrorUtil.getErrorMessage(errorMessage, 'Unknown error'));\n  }, [handleError]);\n\n  return (\n    <>\n      <FastaDataImportDialog\n        extraActions={extraActions}\n        onDataChange={onDataChange}\n        onError={onError}\n        ref={fastaDataImportDialogRef}\n      />\n    </>\n  );\n};\n"],"mappings":";;;;;;;;;;AAwBA,IAAaE,KAA+B,EAAE,iBAAc,eAA8C;CACxG,IAAMC,IAAUF,EAASG,IAAQ,MAAUC,EAAM,OAAO,GAClDC,IAAmBL,EAASG,IAAQ,MAAUC,EAAM,gBAAgB,GACpEE,IAA2BC,EAAwC,IAAI;CAkB7E,AAhBAC,QAAgB;EACd,IAAMC,IAAW,CAEfC,EAAU,QAAQC,CAAwB,CAAC,CAAC,iBAAiB,uBAAuB,MAAiC;GACnH,EAAyB,SAAS,KAAKC,IAAsB,EAAE,uBAAoB,IAAI,KAAA,CAAS;EAClG,CAAC,GAEDF,EAAU,QAAQC,CAAwB,CAAC,CAAC,iBAAiB,6BAA6B;GACxF,EAAyB,SAAS,MAAM;EAC1C,CAAC,CACH;EACA,aAAa;GACX,EAAS,SAAS,MAAWE,EAAO,CAAC;EACvC;CACF,GAAG,CAAC,CAAC,GAELL,QAAgB;EAEd,IAAMM,IAAY,IAAI,gBAAgB,OAAO,SAAS,MAAM,GACtDC,IAAgBD,EAAU,IAAI,aAAa,GAC3CE,IAAmBF,EAAU,IAAI,gBAAgB;EAyCvD,aAvCsC;GACpC,IAAIC,GAAe;IACjB,EAAiBE,EAAe,OAAO;IACvC,IAAI;KACF,IAAMC,IAAW,MAAM,MAAMH,CAAa;KAC1C,IAAI,CAACG,EAAS,IACZ,MAAU,MAAM,uBAAuBA,EAAS,OAAO,EAAE;KAE3D,IAAMC,IAAY,MAAMD,EAAS,KAAK;KAEtC,IAAI,CAACC,EAAU,KAAK,GAElB,MADAd,EAAiBY,EAAe,KAAK,GAC3B,MAAM,2GAA2G;KAG7H,IAAIG;KACJ,IAAIJ,GACF,IAAI;MACF,IAAMK,IAAU,MAAM,MAAML,CAAgB;MAC5C,AAAIK,EAAQ,OACV,IAAW,MAAMA,EAAQ,KAAK;KAElC,SAASC,GAAS;MAChB,QAAQ,KAAK,wCAAwCA,CAAO;KAC9D;KAGF,MAAMpB,EAAQiB,GAAWC,CAAQ;IACnC,SAASG,GAAU;KACjB,QAAQ,MAAM,oCAAoCA,CAAQ;KAC1D,IAAMC,IAAUD,aAAoB,QAAQA,EAAS,UAAU;KAC/D,EAAU,QAAQZ,CAAwB,CAAC,CAAC,KAAK,sBAAsBa,CAAO;IAChF;GACF,OAEE,EAAU,QAAQb,CAAwB,CAAC,CAAC,KAAK,oBAAoB;EAEzE,EAEK,CAAkB;CACzB,GAAG,CAACT,GAASG,CAAgB,CAAC;CAE9B,IAAMoB,IAAcC,GAAa,MAAyB;EAExD,AADApB,EAAyB,SAAS,MAAM,GACxCI,EAAU,QAAQC,CAAwB,CAAC,CAAC,KAAK,sBAAsBgB,CAAY;CACrF,GAAG,CAAC,CAAC,GAECC,IAAeF,EAAY,OAAO,GAAsB,MAA6B;EACzF,IAAI;GAEF,AADA,MAAMxB,EAAQ2B,GAAcC,CAAe,GAC3CxB,EAAyB,SAAS,MAAM;EAC1C,SAAS,GAAG;GACV,EAAYyB,EAAU,gBAAgB,GAAG,eAAe,CAAC;EAC3D,UAAU;GAER,EAAQ,kBAAkB;EAC5B;CACF,GAAG,CAACN,GAAavB,CAAO,CAAC,GAEnB8B,IAAUN,GAAa,MAA0B;EACrD,EAAYK,EAAU,gBAAgBJ,GAAc,eAAe,CAAC;CACtE,GAAG,CAACF,CAAW,CAAC;CAEhB,OACE,kBAAA1B,GAAA,EAAA,UACE,kBAACmC,GAAD;EACgB;EACA;EACL;EACT,KAAK5B;CACN,CAAA,EACD,CAAA;AAEN"}

package/dist/components/fasta/FastaNotLoaded/index.js

@@ -0,0 +1,54 @@
+import { FastaDataEventBusService as e } from "../../../classes/services/FastaDataEventBusService/index.js";
+import { container as t } from "tsyringe";
+import { Box as n, Button as r, Typography as i } from "@mui/material";
+import { jsx as a, jsxs as o } from "react/jsx-runtime";
+import { useCallback as s } from "react";
+import c from "@mui/icons-material/FileUploadOutlined";
+//#region src/components/fasta/FastaNotLoaded/FastaNotLoaded.tsx
+var l = ({ description: l, icon: u, title: d }) => {
+	let f = s(() => {
+		t.resolve(e).emit("onShowImportDialog");
+	}, []);
+	return /* @__PURE__ */ o(n, {
+		sx: {
+			alignItems: "center",
+			display: "flex",
+			flexDirection: "column",
+			gap: 2,
+			height: "100%",
+			justifyContent: "center",
+			p: 3,
+			width: "100%"
+		},
+		children: [
+			u,
+			/* @__PURE__ */ a(i, {
+				color: "text.secondary",
+				sx: { fontWeight: 600 },
+				variant: "h6",
+				children: d
+			}),
+			/* @__PURE__ */ a(i, {
+				color: "text.secondary",
+				sx: {
+					maxWidth: 450,
+					textAlign: "center"
+				},
+				variant: "body2",
+				children: l
+			}),
+			/* @__PURE__ */ a(r, {
+				color: "primary",
+				onClick: f,
+				startIcon: /* @__PURE__ */ a(c, {}),
+				sx: { mt: 1 },
+				variant: "contained",
+				children: "Load Data"
+			})
+		]
+	});
+};
+//#endregion
+export { l as FastaNotLoaded };
+
+//# sourceMappingURL=index.js.map

package/dist/components/fasta/FastaNotLoaded/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","names":["FileUploadOutlinedIcon","FastaNotLoaded","onClickLoadData","useCallback","FastaDataEventBusService","Box","icon","Typography","title","description","Button"],"sources":["../../../../src/components/fasta/FastaNotLoaded/FastaNotLoaded.tsx"],"sourcesContent":["import { container } from 'tsyringe';\nimport {\n  Box,\n  Button,\n  Typography,\n} from '@mui/material';\nimport FileUploadOutlinedIcon from '@mui/icons-material/FileUploadOutlined';\nimport type { ReactNode } from 'react';\nimport { useCallback } from 'react';\n\nimport { FastaDataEventBusService } from '../../../classes/services/FastaDataEventBusService';\n\nexport type FastaNotLoadedProps = {\n  description: ReactNode;\n  icon: ReactNode;\n  title: ReactNode;\n};\n\nexport const FastaNotLoaded = ({ description, icon, title }: FastaNotLoadedProps) => {\n  const onClickLoadData = useCallback(() => {\n    container.resolve(FastaDataEventBusService).emit('onShowImportDialog');\n  }, []);\n\n  return (\n    <Box\n      sx={{\n        alignItems: 'center',\n        display: 'flex',\n        flexDirection: 'column',\n        gap: 2,\n        height: '100%',\n        justifyContent: 'center',\n        p: 3,\n        width: '100%',\n      }}\n    >\n      {icon}\n      <Typography\n        color={'text.secondary'}\n        sx={{ fontWeight: 600 }}\n        variant={'h6'}\n      >\n        {title}\n      </Typography>\n      <Typography\n        color={'text.secondary'}\n        sx={{ maxWidth: 450, textAlign: 'center' }}\n        variant={'body2'}\n      >\n        {description}\n      </Typography>\n      <Button\n        color={'primary'}\n        onClick={onClickLoadData}\n        startIcon={<FileUploadOutlinedIcon />}\n        sx={{ mt: 1 }}\n        variant={'contained'}\n      >\n        {'Load Data'}\n      </Button>\n    </Box>\n  );\n};\n"],"mappings":";;;;;;;AAkBA,IAAaC,KAAkB,EAAE,gBAAa,SAAM,eAAiC;CACnF,IAAMC,IAAkBC,QAAkB;EACxC,EAAU,QAAQC,CAAwB,CAAC,CAAC,KAAK,oBAAoB;CACvE,GAAG,CAAC,CAAC;CAEL,OACE,kBAACC,GAAD;EACE,IAAI;GACF,YAAY;GACZ,SAAS;GACT,eAAe;GACf,KAAK;GACL,QAAQ;GACR,gBAAgB;GAChB,GAAG;GACH,OAAO;EACT;EAVF,UAAA;GAYGC;GACD,kBAACC,GAAD;IACE,OAAO;IACP,IAAI,EAAE,YAAY,IAAI;IACtB,SAAS;IAER,UAAAC;GACS,CAAA;GACZ,kBAACD,GAAD;IACE,OAAO;IACP,IAAI;KAAE,UAAU;KAAK,WAAW;IAAS;IACzC,SAAS;IAER,UAAAE;GACS,CAAA;GACZ,kBAACC,GAAD;IACE,OAAO;IACP,SAASR;IACT,WAAW,kBAACF,GAAD,CAAyB,CAAA;IACpC,IAAI,EAAE,IAAI,EAAE;IACZ,SAAS;IAER,UAAA;GACK,CAAA;EACL;;AAET"}

package/dist/components/{FastaPageHeaderCenterComponent → fasta/FastaPageHeaderCenterComponent}/FastaPageHeaderCenterComponent.d.ts

@@ -1,5 +1,5 @@
 import { StoreApi } from 'zustand';
-import { FastaDataStore } from '../../stores/fastaDataStore';
+import { FastaDataStore } from '../../../stores/fastaDataStore';
 export type FastaPageHeaderCenterComponentProps = {
     store: StoreApi<FastaDataStore>;
 };

package/dist/components/{FastaPageHeaderCenterComponent → fasta/FastaPageHeaderCenterComponent}/index.js

@@ -1,7 +1,7 @@
-import { t as e } from "../../_chunks/react.js";
+import { t as e } from "../../../_chunks/react.js";
 import { Box as t, Chip as n } from "@mui/material";
 import { jsx as r, jsxs as i } from "react/jsx-runtime";
-//#region src/components/FastaPageHeaderCenterComponent/FastaPageHeaderCenterComponent.tsx
+//#region src/components/fasta/FastaPageHeaderCenterComponent/FastaPageHeaderCenterComponent.tsx
 var a = ({ store: a }) => {
 	let o = e(a, (e) => e.parsedFasta), s = e(a, (e) => e.parsedMetadata), c = o?.sequences?.length || 0, l = s?.records?.length || 0;
 	return /* @__PURE__ */ i(t, {

package/dist/components/fasta/FastaPageHeaderCenterComponent/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","names":["useStore","FastaPageHeaderCenterComponent","parsedFasta","store","state","parsedMetadata","seqCount","metaCount","Box","Chip"],"sources":["../../../../src/components/fasta/FastaPageHeaderCenterComponent/FastaPageHeaderCenterComponent.tsx"],"sourcesContent":["import {\n  Box,\n  Chip,\n} from '@mui/material';\nimport type { StoreApi } from 'zustand';\nimport { useStore } from 'zustand';\n\nimport type { FastaDataStore } from '../../../stores/fastaDataStore';\n\n\nexport type FastaPageHeaderCenterComponentProps = {\n  store: StoreApi<FastaDataStore>;\n};\n\nexport const FastaPageHeaderCenterComponent = ({ store }: FastaPageHeaderCenterComponentProps) => {\n  const parsedFasta = useStore(store, (state) => state.parsedFasta);\n  const parsedMetadata = useStore(store, (state) => state.parsedMetadata);\n\n  const seqCount = parsedFasta?.sequences?.length || 0;\n  const metaCount = parsedMetadata?.records?.length || 0;\n\n  return (\n    <Box sx={{ alignItems: 'center', display: 'flex', gap: 1 }}>\n      {seqCount > 0 && (\n        <Chip\n          label={`${seqCount} Sequences`}\n          size={'small'}\n          sx={{\n            backgroundColor: 'rgba(255, 255, 255, 0.2)',\n            color: '#FFFFFF',\n            fontSize: '0.75rem',\n            fontWeight: 600,\n          }}\n        />\n      )}\n      {metaCount > 0 && (\n        <Chip\n          label={`${metaCount} Metadata Records`}\n          size={'small'}\n          sx={{\n            backgroundColor: 'rgba(255, 255, 255, 0.2)',\n            color: '#FFFFFF',\n            fontSize: '0.75rem',\n            fontWeight: 600,\n          }}\n        />\n      )}\n    </Box>\n  );\n};\n"],"mappings":";;;;AAcA,IAAaC,KAAkC,EAAE,eAAiD;CAChG,IAAMC,IAAcF,EAASG,IAAQ,MAAUC,EAAM,WAAW,GAC1DC,IAAiBL,EAASG,IAAQ,MAAUC,EAAM,cAAc,GAEhEE,IAAWJ,GAAa,WAAW,UAAU,GAC7CK,IAAYF,GAAgB,SAAS,UAAU;CAErD,OACE,kBAACG,GAAD;EAAK,IAAI;GAAE,YAAY;GAAU,SAAS;GAAQ,KAAK;EAAE;EAAzD,UAAA,CACGF,IAAW,KACV,kBAACG,GAAD;GACE,OAAO,GAAGH,EAAS;GACnB,MAAM;GACN,IAAI;IACF,iBAAiB;IACjB,OAAO;IACP,UAAU;IACV,YAAY;GACd;EACD,CAAA,GAEFC,IAAY,KACX,kBAACE,GAAD;GACE,OAAO,GAAGF,EAAU;GACpB,MAAM;GACN,IAAI;IACF,iBAAiB;IACjB,OAAO;IACP,UAAU;IACV,YAAY;GACd;EACD,CAAA,CAEA;;AAET"}

package/dist/components/fasta/FastaPageHeaderImportButton/index.js

@@ -0,0 +1,27 @@
+import { FastaDataEventBusService as e } from "../../../classes/services/FastaDataEventBusService/index.js";
+import { container as t } from "tsyringe";
+import { Button as n } from "@mui/material";
+import { jsx as r } from "react/jsx-runtime";
+import { useCallback as i } from "react";
+import a from "@mui/icons-material/FileUploadOutlined";
+//#region src/components/fasta/FastaPageHeaderImportButton/FastaPageHeaderImportButton.tsx
+var o = () => {
+	let o = i(() => t.resolve(e).emit("onShowImportDialog"), []);
+	return /* @__PURE__ */ r(n, {
+		color: "inherit",
+		onClick: o,
+		size: "small",
+		startIcon: /* @__PURE__ */ r(a, {}),
+		sx: {
+			"&:hover": { backgroundColor: "rgba(255, 255, 255, 0.25)" },
+			backgroundColor: "rgba(255, 255, 255, 0.15)",
+			color: "#FFFFFF"
+		},
+		variant: "contained",
+		children: "Import Data"
+	});
+};
+//#endregion
+export { o as FastaPageHeaderImportButton };
+
+//# sourceMappingURL=index.js.map

package/dist/components/fasta/FastaPageHeaderImportButton/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","names":["FileUploadOutlinedIcon","FastaPageHeaderImportButton","onImportDataButtonClick","useCallback","container","FastaDataEventBusService","Button"],"sources":["../../../../src/components/fasta/FastaPageHeaderImportButton/FastaPageHeaderImportButton.tsx"],"sourcesContent":["import { container } from 'tsyringe';\nimport FileUploadOutlinedIcon from '@mui/icons-material/FileUploadOutlined';\nimport { Button } from '@mui/material';\nimport { useCallback } from 'react';\n\nimport { FastaDataEventBusService } from '../../../classes/services/FastaDataEventBusService';\n\nexport const FastaPageHeaderImportButton = () => {\n  const onImportDataButtonClick = useCallback(() => container.resolve(FastaDataEventBusService).emit('onShowImportDialog'), []);\n\n  return (\n    <Button\n      color={'inherit'}\n      onClick={onImportDataButtonClick}\n      size={'small'}\n      startIcon={<FileUploadOutlinedIcon />}\n      sx={{\n        '&:hover': {\n          backgroundColor: 'rgba(255, 255, 255, 0.25)',\n        },\n        backgroundColor: 'rgba(255, 255, 255, 0.15)',\n        color: '#FFFFFF',\n      }}\n      variant={'contained'}\n    >\n      {'Import Data'}\n    </Button>\n  );\n};\n"],"mappings":";;;;;;;AAOA,IAAaC,UAAoC;CAC/C,IAAMC,IAA0BC,QAAkBC,EAAU,QAAQC,CAAwB,CAAC,CAAC,KAAK,oBAAoB,GAAG,CAAC,CAAC;CAE5H,OACE,kBAACC,GAAD;EACE,OAAO;EACP,SAASJ;EACT,MAAM;EACN,WAAW,kBAACF,GAAD,CAAyB,CAAA;EACpC,IAAI;GACF,WAAW,EACT,iBAAiB,4BACnB;GACA,iBAAiB;GACjB,OAAO;EACT;EACA,SAAS;EAER,UAAA;CACK,CAAA;AAEZ"}

package/dist/components/{FastaPageHeaderResetButton → fasta/FastaPageHeaderResetButton}/index.js

@@ -4,7 +4,7 @@ import { Fragment as r, jsx as i, jsxs as a } from "react/jsx-runtime";
 import { useCallback as o, useRef as s } from "react";
 import c from "@mui/icons-material/RestartAlt";
 import { Confirmation as l } from "@gen-epix/ui-core-components/components/Confirmation";
-//#region src/components/FastaPageHeaderResetButton/FastaPageHeaderResetButton.tsx
+//#region src/components/fasta/FastaPageHeaderResetButton/FastaPageHeaderResetButton.tsx
 var u = ({ onReset: u }) => {
 	let d = s(null), f = o(() => {
 		d.current?.open();

package/dist/components/fasta/FastaPageHeaderResetButton/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","names":["_Fragment","RestartAltIcon","FastaPageHeaderResetButton","confirmationRef","useRef","onClickResetSession","useCallback","onConfirm","onReset","Fragment","Tooltip","IconButton","Confirmation"],"sources":["../../../../src/components/fasta/FastaPageHeaderResetButton/FastaPageHeaderResetButton.tsx"],"sourcesContent":["import RestartAltIcon from '@mui/icons-material/RestartAlt';\nimport {\n  IconButton,\n  Tooltip,\n} from '@mui/material';\nimport {\n  useCallback,\n  useRef,\n} from 'react';\nimport { Confirmation } from '@gen-epix/ui-core-components/components/Confirmation';\nimport type { ConfirmationRefMethods } from '@gen-epix/ui-core-components/components/Confirmation';\nimport { t } from 'i18next';\n\nexport type FastaPageHeaderResetButtonProps = {\n  onReset: () => void;\n};\n\nexport const FastaPageHeaderResetButton = ({ onReset }: FastaPageHeaderResetButtonProps) => {\n  const confirmationRef = useRef<ConfirmationRefMethods>(null);\n  const onClickResetSession = useCallback(() => {\n    confirmationRef.current?.open();\n  }, []);\n\n  const onConfirm = useCallback(() => {\n    onReset();\n  }, [onReset]);\n\n  return (\n    <>\n      <Tooltip title={'Reset current session and dataset'}>\n        <IconButton\n          color={'inherit'}\n          onClick={onClickResetSession}\n          size={'small'}\n          sx={{ opacity: 0.85 }}\n        >\n          <RestartAltIcon fontSize={'small'} />\n        </IconButton>\n      </Tooltip>\n      <Confirmation\n        body={t`Are you sure you want to reset the current session and dataset?`}\n        cancelLabel={t`Cancel`}\n        confirmLabel={t`Reset`}\n        onConfirm={onConfirm}\n        ref={confirmationRef}\n        title={t`Reset current session and dataset?`}\n      />\n    </>\n  );\n};\n"],"mappings":";;;;;;;AAiBA,IAAaE,KAA8B,EAAE,iBAA+C;CAC1F,IAAMC,IAAkBC,EAA+B,IAAI,GACrDC,IAAsBC,QAAkB;EAC5C,EAAgB,SAAS,KAAK;CAChC,GAAG,CAAC,CAAC,GAECC,IAAYD,QAAkB;EAClC,EAAQ;CACV,GAAG,CAACE,CAAO,CAAC;CAEZ,OACE,kBAAAR,GAAA,EAAA,UAAA,CACE,kBAACU,GAAD;EAAS,OAAO;EACd,UAAA,kBAACC,GAAD;GACE,OAAO;GACP,SAASN;GACT,MAAM;GACN,IAAI,EAAE,SAAS,IAAK;GAEpB,UAAA,kBAACJ,GAAD,EAAgB,UAAU,QAAU,CAAA;EAC1B,CAAA;CACL,CAAA,GACT,kBAACW,GAAD;EACE,MAAM,CAAC;EACP,aAAa,CAAC;EACd,cAAc,CAAC;EACJ;EACX,KAAKT;EACL,OAAO,CAAC;CACT,CAAA,CACD,EAAA,CAAA;AAEN"}

package/dist/components/ui/ButtonWithMenu/ButtonWithMenu.d.ts

@@ -0,0 +1,12 @@
+import { ReactElement } from 'react';
+export type ButtonWithMenuProps = {
+    disabled?: boolean;
+    items: Array<{
+        icon: ReactElement;
+        label: string;
+        onClick: () => void;
+    }>;
+    label: string;
+    startIcon?: ReactElement;
+};
+export declare const ButtonWithMenu: ({ disabled, items, label, startIcon }: ButtonWithMenuProps) => import('react').JSX.Element;

package/dist/components/ui/ButtonWithMenu/index.d.ts

@@ -0,0 +1 @@
+export * from './ButtonWithMenu';

package/dist/components/ui/ButtonWithMenu/index.js

@@ -0,0 +1,47 @@
+import { Button as e, ListItemIcon as t, ListItemText as n, Menu as r, MenuItem as i } from "@mui/material";
+import { Fragment as a, jsx as o, jsxs as s } from "react/jsx-runtime";
+import { useCallback as c, useState as l } from "react";
+//#region src/components/ui/ButtonWithMenu/ButtonWithMenu.tsx
+var u = ({ disabled: u, items: d, label: f, startIcon: p }) => {
+	let [m, h] = l(null), g = !!m, _ = c((e) => {
+		h(e.currentTarget);
+	}, []), v = c(() => {
+		h(null);
+	}, []);
+	return /* @__PURE__ */ s(a, { children: [/* @__PURE__ */ o(e, {
+		color: "inherit",
+		disabled: u,
+		onClick: _,
+		size: "small",
+		startIcon: p,
+		sx: {
+			"&:hover": { backgroundColor: "rgba(255, 255, 255, 0.25)" },
+			backgroundColor: "rgba(255, 255, 255, 0.15)",
+			color: "#FFFFFF"
+		},
+		variant: "contained",
+		children: f
+	}), /* @__PURE__ */ o(r, {
+		anchorEl: m,
+		anchorOrigin: {
+			horizontal: "right",
+			vertical: "bottom"
+		},
+		onClose: v,
+		open: g,
+		transformOrigin: {
+			horizontal: "right",
+			vertical: "top"
+		},
+		children: d.map(({ icon: e, label: r, onClick: a }) => /* @__PURE__ */ s(i, {
+			onClick: () => {
+				v(), a();
+			},
+			children: [/* @__PURE__ */ o(t, { children: e }), /* @__PURE__ */ o(n, { primary: r })]
+		}, r))
+	})] });
+};
+//#endregion
+export { u as ButtonWithMenu };
+
+//# sourceMappingURL=index.js.map