@rivm-loculus-tools/common-frontend 0.1.4 → 0.3.0

package/dist/components/FastaDataImportDialogLoader/index.js

@@ -1,70 +0,0 @@
-import { UrlUtil as e } from "../../utils/UrlUtil/index.js";
-import { ErrorUtil as t } from "../../utils/ErrorUtil/index.js";
-import { LOADING_STATUS as n } from "../../models/fasta.js";
-import { FastaDataEventBusService as r } from "../../classes/services/FastaDataEventBusService/index.js";
-import { t as i } from "../../_chunks/react.js";
-import { t as a } from "../../_chunks/FastaDataImportDialog.js";
-import { Fragment as o, jsx as s } from "react/jsx-runtime";
-import { useCallback as c, useEffect as l, useRef as u } from "react";
-//#region src/components/FastaDataImportDialogLoader/FastaDataImportDialogLoader.tsx
-var d = ({ extraActions: d, store: f }) => {
-	let p = i(f, (e) => e.setData), m = i(f, (e) => e.setLoadingStatus), h = u(null);
-	l(() => {
-		let e = [r.getInstance().addEventListener("onShowImportDialog", (e) => {
-			h.current?.open(e ? { initialErrorMessage: e } : void 0);
-		}), r.getInstance().addEventListener("onCloseImportDialog", () => {
-			h.current?.close();
-		})];
-		return () => {
-			e.forEach((e) => e());
-		};
-	}, []), l(() => {
-		let e = new URLSearchParams(window.location.search), t = e.get("input-fasta"), i = e.get("input-metadata");
-		(async () => {
-			if (t) {
-				m(n.LOADING);
-				try {
-					let e = await fetch(t);
-					if (!e.ok) throw Error(`FASTA fetch failed (${e.status})`);
-					let r = await e.text();
-					if (!r.trim()) throw m(n.ERROR), Error("The input-fasta URL returned no sequence data. Check that the URL and requested accession(s) are correct.");
-					let a;
-					if (i) try {
-						let e = await fetch(i);
-						e.ok && (a = await e.text());
-					} catch (e) {
-						console.warn("[App] Failed to auto-fetch metadata:", e);
-					}
-					await p(r, a);
-				} catch (e) {
-					console.error("[App] Failed to auto-load FASTA:", e);
-					let t = e instanceof Error ? e.message : "Failed to auto-load FASTA from the provided URL.";
-					r.getInstance().emit("onShowImportDialog", t);
-				}
-			} else r.getInstance().emit("onShowImportDialog");
-		})();
-	}, [p, m]);
-	let g = c((e) => {
-		h.current?.close(), r.getInstance().emit("onShowImportDialog", e);
-	}, []), _ = c(async (n, r) => {
-		try {
-			await p(n, r), h.current?.close();
-		} catch (e) {
-			g(t.getErrorMessage(e, "Unknown error"));
-		} finally {
-			e.clearSearchParams();
-		}
-	}, [g, p]), v = c((e) => {
-		g(t.getErrorMessage(e, "Unknown error"));
-	}, [g]);
-	return /* @__PURE__ */ s(o, { children: /* @__PURE__ */ s(a, {
-		extraActions: d,
-		onDataChange: _,
-		onError: v,
-		ref: h
-	}) });
-};
-//#endregion
-export { d as FastaDataImportDialogLoader };
-
-//# sourceMappingURL=index.js.map

package/dist/components/FastaDataImportDialogLoader/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/components/FastaDataImportDialogLoader/FastaDataImportDialogLoader.tsx"],"sourcesContent":["import type { DialogAction } from '@gen-epix/ui-core-components/components/Dialog';\nimport {\n  useCallback,\n  useEffect,\n  useRef,\n} from 'react';\nimport type { StoreApi } from 'zustand';\nimport { useStore } from 'zustand';\n\nimport { FastaDataEventBusService } from '../../classes/services/FastaDataEventBusService';\nimport { LOADING_STATUS } from '../../models/fasta';\nimport type { FastaDataStore } from '../../stores/fastaDataStore';\nimport { UrlUtil } from '../../utils/UrlUtil';\nimport type { FastaDataImportDialogRefMethods } from '../FastaDataImportDialog/FastaDataImportDialog';\nimport { FastaDataImportDialog } from '../FastaDataImportDialog/FastaDataImportDialog';\nimport { ErrorUtil } from '../../utils/ErrorUtil';\n\n\nexport type FastaDataImportDialogLoaderProps = {\n  extraActions: DialogAction[];\n  store: StoreApi<FastaDataStore>;\n};\n\nexport const FastaDataImportDialogLoader = ({ extraActions, store }: FastaDataImportDialogLoaderProps) => {\n  const setData = useStore(store, (state) => state.setData);\n  const setLoadingStatus = useStore(store, (state) => state.setLoadingStatus);\n  const fastaDataImportDialogRef = useRef<FastaDataImportDialogRefMethods>(null);\n\n  useEffect(() => {\n    const removers = [\n      // eslint-disable-next-line @eslint-react/web-api-no-leaked-event-listener\n      FastaDataEventBusService.getInstance().addEventListener('onShowImportDialog', (initialErrorMessage?: string) => {\n        fastaDataImportDialogRef.current?.open(initialErrorMessage ? { initialErrorMessage } : undefined);\n      }),\n      // eslint-disable-next-line @eslint-react/web-api-no-leaked-event-listener\n      FastaDataEventBusService.getInstance().addEventListener('onCloseImportDialog', () => {\n        fastaDataImportDialogRef.current?.close();\n      }),\n    ];\n    return () => {\n      removers.forEach((remove) => remove());\n    };\n  }, []);\n\n  useEffect(() => {\n    // Scan URL parameters for deep-linking\n    const urlParams = new URLSearchParams(window.location.search);\n    const inputFastaUrl = urlParams.get('input-fasta');\n    const inputMetadataUrl = urlParams.get('input-metadata');\n\n    const handleDeepLinking = async () => {\n      if (inputFastaUrl) {\n        setLoadingStatus(LOADING_STATUS.LOADING);\n        try {\n          const fastaRes = await fetch(inputFastaUrl);\n          if (!fastaRes.ok) {\n            throw new Error(`FASTA fetch failed (${fastaRes.status})`);\n          }\n          const fastaText = await fastaRes.text();\n\n          if (!fastaText.trim()) {\n            setLoadingStatus(LOADING_STATUS.ERROR);\n            throw new Error('The input-fasta URL returned no sequence data. Check that the URL and requested accession(s) are correct.');\n          }\n\n          let metaText: string | undefined;\n          if (inputMetadataUrl) {\n            try {\n              const metaRes = await fetch(inputMetadataUrl);\n              if (metaRes.ok) {\n                metaText = await metaRes.text();\n              }\n            } catch (metaErr) {\n              console.warn('[App] Failed to auto-fetch metadata:', metaErr);\n            }\n          }\n\n          await setData(fastaText, metaText);\n        } catch (fastaErr) {\n          console.error('[App] Failed to auto-load FASTA:', fastaErr);\n          const message = fastaErr instanceof Error ? fastaErr.message : 'Failed to auto-load FASTA from the provided URL.';\n          FastaDataEventBusService.getInstance().emit('onShowImportDialog', message);\n        }\n      } else {\n        // PV1-02: Show data loading modal if no data provided via URL query params\n        FastaDataEventBusService.getInstance().emit('onShowImportDialog');\n      }\n    };\n\n    void handleDeepLinking();\n  }, [setData, setLoadingStatus]);\n\n  const handleError = useCallback((errorMessage: string) => {\n    fastaDataImportDialogRef.current?.close();\n    FastaDataEventBusService.getInstance().emit('onShowImportDialog', errorMessage);\n  }, []);\n\n  const onDataChange = useCallback(async (fastaContent: string, metadataContent?: string) => {\n    try {\n      await setData(fastaContent, metadataContent);\n      fastaDataImportDialogRef.current?.close();\n    } catch (e) {\n      handleError(ErrorUtil.getErrorMessage(e, 'Unknown error'));\n    } finally {\n      // clear any search params from the URL\n      UrlUtil.clearSearchParams();\n    }\n  }, [handleError, setData]);\n\n  const onError = useCallback((errorMessage: unknown) => {\n    handleError(ErrorUtil.getErrorMessage(errorMessage, 'Unknown error'));\n  }, [handleError]);\n\n  return (\n    <>\n      <FastaDataImportDialog\n        extraActions={extraActions}\n        onDataChange={onDataChange}\n        onError={onError}\n        ref={fastaDataImportDialogRef}\n      />\n    </>\n  );\n};\n"],"mappings":";;;;;;;;;AAuBA,IAAa,KAA+B,EAAE,iBAAc,eAA8C;CACxG,IAAM,IAAU,EAAS,IAAQ,MAAU,EAAM,OAAO,GAClD,IAAmB,EAAS,IAAQ,MAAU,EAAM,gBAAgB,GACpE,IAA2B,EAAwC,IAAI;CAkB7E,AAhBA,QAAgB;EACd,IAAM,IAAW,CAEf,EAAyB,YAAY,CAAC,CAAC,iBAAiB,uBAAuB,MAAiC;GAC9G,EAAyB,SAAS,KAAK,IAAsB,EAAE,uBAAoB,IAAI,KAAA,CAAS;EAClG,CAAC,GAED,EAAyB,YAAY,CAAC,CAAC,iBAAiB,6BAA6B;GACnF,EAAyB,SAAS,MAAM;EAC1C,CAAC,CACH;EACA,aAAa;GACX,EAAS,SAAS,MAAW,EAAO,CAAC;EACvC;CACF,GAAG,CAAC,CAAC,GAEL,QAAgB;EAEd,IAAM,IAAY,IAAI,gBAAgB,OAAO,SAAS,MAAM,GACtD,IAAgB,EAAU,IAAI,aAAa,GAC3C,IAAmB,EAAU,IAAI,gBAAgB;EAyCvD,aAvCsC;GACpC,IAAI,GAAe;IACjB,EAAiB,EAAe,OAAO;IACvC,IAAI;KACF,IAAM,IAAW,MAAM,MAAM,CAAa;KAC1C,IAAI,CAAC,EAAS,IACZ,MAAU,MAAM,uBAAuB,EAAS,OAAO,EAAE;KAE3D,IAAM,IAAY,MAAM,EAAS,KAAK;KAEtC,IAAI,CAAC,EAAU,KAAK,GAElB,MADA,EAAiB,EAAe,KAAK,GAC3B,MAAM,2GAA2G;KAG7H,IAAI;KACJ,IAAI,GACF,IAAI;MACF,IAAM,IAAU,MAAM,MAAM,CAAgB;MAC5C,AAAI,EAAQ,OACV,IAAW,MAAM,EAAQ,KAAK;KAElC,SAAS,GAAS;MAChB,QAAQ,KAAK,wCAAwC,CAAO;KAC9D;KAGF,MAAM,EAAQ,GAAW,CAAQ;IACnC,SAAS,GAAU;KACjB,QAAQ,MAAM,oCAAoC,CAAQ;KAC1D,IAAM,IAAU,aAAoB,QAAQ,EAAS,UAAU;KAC/D,EAAyB,YAAY,CAAC,CAAC,KAAK,sBAAsB,CAAO;IAC3E;GACF,OAEE,EAAyB,YAAY,CAAC,CAAC,KAAK,oBAAoB;EAEpE,EAEK,CAAkB;CACzB,GAAG,CAAC,GAAS,CAAgB,CAAC;CAE9B,IAAM,IAAc,GAAa,MAAyB;EAExD,AADA,EAAyB,SAAS,MAAM,GACxC,EAAyB,YAAY,CAAC,CAAC,KAAK,sBAAsB,CAAY;CAChF,GAAG,CAAC,CAAC,GAEC,IAAe,EAAY,OAAO,GAAsB,MAA6B;EACzF,IAAI;GAEF,AADA,MAAM,EAAQ,GAAc,CAAe,GAC3C,EAAyB,SAAS,MAAM;EAC1C,SAAS,GAAG;GACV,EAAY,EAAU,gBAAgB,GAAG,eAAe,CAAC;EAC3D,UAAU;GAER,EAAQ,kBAAkB;EAC5B;CACF,GAAG,CAAC,GAAa,CAAO,CAAC,GAEnB,IAAU,GAAa,MAA0B;EACrD,EAAY,EAAU,gBAAgB,GAAc,eAAe,CAAC;CACtE,GAAG,CAAC,CAAW,CAAC;CAEhB,OACE,kBAAA,GAAA,EAAA,UACE,kBAAC,GAAD;EACgB;EACA;EACL;EACT,KAAK;CACN,CAAA,EACD,CAAA;AAEN"}

package/dist/components/FastaNotLoaded/index.js

@@ -1,53 +0,0 @@
-import { FastaDataEventBusService as e } from "../../classes/services/FastaDataEventBusService/index.js";
-import { Box as t, Button as n, Typography as r } from "@mui/material";
-import { jsx as i, jsxs as a } from "react/jsx-runtime";
-import { useCallback as o } from "react";
-import s from "@mui/icons-material/FileUploadOutlined";
-//#region src/components/FastaNotLoaded/FastaNotLoaded.tsx
-var c = ({ description: c, icon: l, title: u }) => {
-	let d = o(() => {
-		e.getInstance().emit("onShowImportDialog");
-	}, []);
-	return /* @__PURE__ */ a(t, {
-		sx: {
-			alignItems: "center",
-			display: "flex",
-			flexDirection: "column",
-			gap: 2,
-			height: "100%",
-			justifyContent: "center",
-			p: 3,
-			width: "100%"
-		},
-		children: [
-			l,
-			/* @__PURE__ */ i(r, {
-				color: "text.secondary",
-				sx: { fontWeight: 600 },
-				variant: "h6",
-				children: u
-			}),
-			/* @__PURE__ */ i(r, {
-				color: "text.secondary",
-				sx: {
-					maxWidth: 450,
-					textAlign: "center"
-				},
-				variant: "body2",
-				children: c
-			}),
-			/* @__PURE__ */ i(n, {
-				color: "primary",
-				onClick: d,
-				startIcon: /* @__PURE__ */ i(s, {}),
-				sx: { mt: 1 },
-				variant: "contained",
-				children: "Load Data"
-			})
-		]
-	});
-};
-//#endregion
-export { c as FastaNotLoaded };
-
-//# sourceMappingURL=index.js.map

package/dist/components/FastaNotLoaded/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/components/FastaNotLoaded/FastaNotLoaded.tsx"],"sourcesContent":["import {\n  Box,\n  Button,\n  Typography,\n} from '@mui/material';\nimport FileUploadOutlinedIcon from '@mui/icons-material/FileUploadOutlined';\nimport type { ReactNode } from 'react';\nimport { useCallback } from 'react';\n\nimport { FastaDataEventBusService } from '../../classes/services/FastaDataEventBusService';\n\nexport type FastaNotLoadedProps = {\n  description: ReactNode;\n  icon: ReactNode;\n  title: ReactNode;\n};\n\nexport const FastaNotLoaded = ({ description, icon, title }: FastaNotLoadedProps) => {\n  const onClickLoadData = useCallback(() => {\n    FastaDataEventBusService.getInstance().emit('onShowImportDialog');\n  }, []);\n\n  return (\n    <Box\n      sx={{\n        alignItems: 'center',\n        display: 'flex',\n        flexDirection: 'column',\n        gap: 2,\n        height: '100%',\n        justifyContent: 'center',\n        p: 3,\n        width: '100%',\n      }}\n    >\n      {icon}\n      <Typography\n        color={'text.secondary'}\n        sx={{ fontWeight: 600 }}\n        variant={'h6'}\n      >\n        {title}\n      </Typography>\n      <Typography\n        color={'text.secondary'}\n        sx={{ maxWidth: 450, textAlign: 'center' }}\n        variant={'body2'}\n      >\n        {description}\n      </Typography>\n      <Button\n        color={'primary'}\n        onClick={onClickLoadData}\n        startIcon={<FileUploadOutlinedIcon />}\n        sx={{ mt: 1 }}\n        variant={'contained'}\n      >\n        {'Load Data'}\n      </Button>\n    </Box>\n  );\n};\n"],"mappings":";;;;;;AAiBA,IAAa,KAAkB,EAAE,gBAAa,SAAM,eAAiC;CACnF,IAAM,IAAkB,QAAkB;EACxC,EAAyB,YAAY,CAAC,CAAC,KAAK,oBAAoB;CAClE,GAAG,CAAC,CAAC;CAEL,OACE,kBAAC,GAAD;EACE,IAAI;GACF,YAAY;GACZ,SAAS;GACT,eAAe;GACf,KAAK;GACL,QAAQ;GACR,gBAAgB;GAChB,GAAG;GACH,OAAO;EACT;EAVF,UAAA;GAYG;GACD,kBAAC,GAAD;IACE,OAAO;IACP,IAAI,EAAE,YAAY,IAAI;IACtB,SAAS;IAER,UAAA;GACS,CAAA;GACZ,kBAAC,GAAD;IACE,OAAO;IACP,IAAI;KAAE,UAAU;KAAK,WAAW;IAAS;IACzC,SAAS;IAER,UAAA;GACS,CAAA;GACZ,kBAAC,GAAD;IACE,OAAO;IACP,SAAS;IACT,WAAW,kBAAC,GAAD,CAAyB,CAAA;IACpC,IAAI,EAAE,IAAI,EAAE;IACZ,SAAS;IAER,UAAA;GACK,CAAA;EACL;;AAET"}

package/dist/components/FastaPageHeaderCenterComponent/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/components/FastaPageHeaderCenterComponent/FastaPageHeaderCenterComponent.tsx"],"sourcesContent":["import {\n  Box,\n  Chip,\n} from '@mui/material';\nimport type { StoreApi } from 'zustand';\nimport { useStore } from 'zustand';\n\nimport type { FastaDataStore } from '../../stores/fastaDataStore';\n\n\nexport type FastaPageHeaderCenterComponentProps = {\n  store: StoreApi<FastaDataStore>;\n};\n\nexport const FastaPageHeaderCenterComponent = ({ store }: FastaPageHeaderCenterComponentProps) => {\n  const parsedFasta = useStore(store, (state) => state.parsedFasta);\n  const parsedMetadata = useStore(store, (state) => state.parsedMetadata);\n\n  const seqCount = parsedFasta?.sequences?.length || 0;\n  const metaCount = parsedMetadata?.records?.length || 0;\n\n  return (\n    <Box sx={{ alignItems: 'center', display: 'flex', gap: 1 }}>\n      {seqCount > 0 && (\n        <Chip\n          label={`${seqCount} Sequences`}\n          size={'small'}\n          sx={{\n            backgroundColor: 'rgba(255, 255, 255, 0.2)',\n            color: '#FFFFFF',\n            fontSize: '0.75rem',\n            fontWeight: 600,\n          }}\n        />\n      )}\n      {metaCount > 0 && (\n        <Chip\n          label={`${metaCount} Metadata Records`}\n          size={'small'}\n          sx={{\n            backgroundColor: 'rgba(255, 255, 255, 0.2)',\n            color: '#FFFFFF',\n            fontSize: '0.75rem',\n            fontWeight: 600,\n          }}\n        />\n      )}\n    </Box>\n  );\n};\n"],"mappings":";;;;AAcA,IAAa,KAAkC,EAAE,eAAiD;CAChG,IAAM,IAAc,EAAS,IAAQ,MAAU,EAAM,WAAW,GAC1D,IAAiB,EAAS,IAAQ,MAAU,EAAM,cAAc,GAEhE,IAAW,GAAa,WAAW,UAAU,GAC7C,IAAY,GAAgB,SAAS,UAAU;CAErD,OACE,kBAAC,GAAD;EAAK,IAAI;GAAE,YAAY;GAAU,SAAS;GAAQ,KAAK;EAAE;EAAzD,UAAA,CACG,IAAW,KACV,kBAAC,GAAD;GACE,OAAO,GAAG,EAAS;GACnB,MAAM;GACN,IAAI;IACF,iBAAiB;IACjB,OAAO;IACP,UAAU;IACV,YAAY;GACd;EACD,CAAA,GAEF,IAAY,KACX,kBAAC,GAAD;GACE,OAAO,GAAG,EAAU;GACpB,MAAM;GACN,IAAI;IACF,iBAAiB;IACjB,OAAO;IACP,UAAU;IACV,YAAY;GACd;EACD,CAAA,CAEA;;AAET"}

package/dist/components/FastaPageHeaderImportButton/index.js

@@ -1,26 +0,0 @@
-import { FastaDataEventBusService as e } from "../../classes/services/FastaDataEventBusService/index.js";
-import { Button as t } from "@mui/material";
-import { jsx as n } from "react/jsx-runtime";
-import { useCallback as r } from "react";
-import i from "@mui/icons-material/FileUploadOutlined";
-//#region src/components/FastaPageHeaderImportButton/FastaPageHeaderImportButton.tsx
-var a = () => {
-	let a = r(() => e.getInstance().emit("onShowImportDialog"), []);
-	return /* @__PURE__ */ n(t, {
-		color: "inherit",
-		onClick: a,
-		size: "small",
-		startIcon: /* @__PURE__ */ n(i, {}),
-		sx: {
-			"&:hover": { backgroundColor: "rgba(255, 255, 255, 0.25)" },
-			backgroundColor: "rgba(255, 255, 255, 0.15)",
-			color: "#FFFFFF"
-		},
-		variant: "contained",
-		children: "Import Data"
-	});
-};
-//#endregion
-export { a as FastaPageHeaderImportButton };
-
-//# sourceMappingURL=index.js.map

package/dist/components/FastaPageHeaderImportButton/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/components/FastaPageHeaderImportButton/FastaPageHeaderImportButton.tsx"],"sourcesContent":["import FileUploadOutlinedIcon from '@mui/icons-material/FileUploadOutlined';\nimport { Button } from '@mui/material';\nimport { useCallback } from 'react';\n\nimport { FastaDataEventBusService } from '../../classes/services/FastaDataEventBusService';\n\nexport const FastaPageHeaderImportButton = () => {\n  const onImportDataButtonClick = useCallback(() => FastaDataEventBusService.getInstance().emit('onShowImportDialog'), []);\n\n  return (\n    <Button\n      color={'inherit'}\n      onClick={onImportDataButtonClick}\n      size={'small'}\n      startIcon={<FileUploadOutlinedIcon />}\n      sx={{\n        '&:hover': {\n          backgroundColor: 'rgba(255, 255, 255, 0.25)',\n        },\n        backgroundColor: 'rgba(255, 255, 255, 0.15)',\n        color: '#FFFFFF',\n      }}\n      variant={'contained'}\n    >\n      {'Import Data'}\n    </Button>\n  );\n};\n"],"mappings":";;;;;;AAMA,IAAa,UAAoC;CAC/C,IAAM,IAA0B,QAAkB,EAAyB,YAAY,CAAC,CAAC,KAAK,oBAAoB,GAAG,CAAC,CAAC;CAEvH,OACE,kBAAC,GAAD;EACE,OAAO;EACP,SAAS;EACT,MAAM;EACN,WAAW,kBAAC,GAAD,CAAyB,CAAA;EACpC,IAAI;GACF,WAAW,EACT,iBAAiB,4BACnB;GACA,iBAAiB;GACjB,OAAO;EACT;EACA,SAAS;EAER,UAAA;CACK,CAAA;AAEZ"}

package/dist/components/FastaPageHeaderResetButton/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/components/FastaPageHeaderResetButton/FastaPageHeaderResetButton.tsx"],"sourcesContent":["import RestartAltIcon from '@mui/icons-material/RestartAlt';\nimport {\n  IconButton,\n  Tooltip,\n} from '@mui/material';\nimport {\n  useCallback,\n  useRef,\n} from 'react';\nimport { Confirmation } from '@gen-epix/ui-core-components/components/Confirmation';\nimport type { ConfirmationRefMethods } from '@gen-epix/ui-core-components/components/Confirmation';\nimport { t } from 'i18next';\n\nexport type FastaPageHeaderResetButtonProps = {\n  onReset: () => void;\n};\n\nexport const FastaPageHeaderResetButton = ({ onReset }: FastaPageHeaderResetButtonProps) => {\n  const confirmationRef = useRef<ConfirmationRefMethods>(null);\n  const onClickResetSession = useCallback(() => {\n    confirmationRef.current?.open();\n  }, []);\n\n  const onConfirm = useCallback(() => {\n    onReset();\n  }, [onReset]);\n\n  return (\n    <>\n      <Tooltip title={'Reset current session and dataset'}>\n        <IconButton\n          color={'inherit'}\n          onClick={onClickResetSession}\n          size={'small'}\n          sx={{ opacity: 0.85 }}\n        >\n          <RestartAltIcon fontSize={'small'} />\n        </IconButton>\n      </Tooltip>\n      <Confirmation\n        body={t`Are you sure you want to reset the current session and dataset?`}\n        cancelLabel={t`Cancel`}\n        confirmLabel={t`Reset`}\n        onConfirm={onConfirm}\n        ref={confirmationRef}\n        title={t`Reset current session and dataset?`}\n      />\n    </>\n  );\n};\n"],"mappings":";;;;;;;AAiBA,IAAa,KAA8B,EAAE,iBAA+C;CAC1F,IAAM,IAAkB,EAA+B,IAAI,GACrD,IAAsB,QAAkB;EAC5C,EAAgB,SAAS,KAAK;CAChC,GAAG,CAAC,CAAC,GAEC,IAAY,QAAkB;EAClC,EAAQ;CACV,GAAG,CAAC,CAAO,CAAC;CAEZ,OACE,kBAAA,GAAA,EAAA,UAAA,CACE,kBAAC,GAAD;EAAS,OAAO;EACd,UAAA,kBAAC,GAAD;GACE,OAAO;GACP,SAAS;GACT,MAAM;GACN,IAAI,EAAE,SAAS,IAAK;GAEpB,UAAA,kBAAC,GAAD,EAAgB,UAAU,QAAU,CAAA;EAC1B,CAAA;CACL,CAAA,GACT,kBAAC,GAAD;EACE,MAAM,CAAC;EACP,aAAa,CAAC;EACd,cAAc,CAAC;EACJ;EACX,KAAK;EACL,OAAO,CAAC;CACT,CAAA,CACD,EAAA,CAAA;AAEN"}

package/dist/components/I18nWrapper/index.js

@@ -1,21 +0,0 @@
-import e from "i18next";
-import { Fragment as t, jsx as n } from "react/jsx-runtime";
-import { useEffect as r, useState as i } from "react";
-import { initReactI18next as a } from "react-i18next";
-//#region src/components/I18nWrapper/I18nWrapper.tsx
-var o = ({ children: o }) => {
-	let [s, c] = i(!1);
-	return r(() => {
-		(async () => {
-			await e.use(a).init({
-				interpolation: { escapeValue: !1 },
-				lng: "en",
-				resources: { en: { translation: {} } }
-			}), c(!0);
-		})();
-	}, []), /* @__PURE__ */ n(t, { children: s ? o : null });
-};
-//#endregion
-export { o as I18nWrapper };
-
-//# sourceMappingURL=index.js.map

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package/dist/components/page/ErrorPageCommon.d.ts

@@ -1,4 +0,0 @@
-export type ErrorPageCommonProps = {
-    error: unknown;
-};
-export declare const ErrorPageCommon: ({ error }: ErrorPageCommonProps) => import('react').JSX.Element;

package/dist/components/page/PageCommon.d.ts

@@ -1,8 +0,0 @@
-import { ReactNode } from 'react';
-export type PageCommonProps = {
-    readonly children: ReactNode;
-    readonly drawerComponent?: ReactNode;
-    readonly headerComponent?: ReactNode;
-    readonly isNoInteraction?: boolean;
-};
-export declare const PageCommon: ({ children, drawerComponent, headerComponent, isNoInteraction }: PageCommonProps) => import('react').JSX.Element;

package/dist/components/page/index.d.ts

@@ -1,6 +0,0 @@
-export * from './ErrorPageCommon';
-export * from './PageCommon';
-export * from './PageCommonContext';
-export * from './PageCommonContextProvider';
-export * from './PageCommonDrawer';
-export * from './PageCommonHeader';

package/dist/components/page/index.js

@@ -1,207 +0,0 @@
-import "../../constants/page.js";
-import { AppBar as e, Box as t, Drawer as n, IconButton as r, Toolbar as i, Typography as a, useTheme as o } from "@mui/material";
-import { t as s } from "i18next";
-import { Fragment as c, jsx as l, jsxs as u } from "react/jsx-runtime";
-import { createContext as d, use as f, useCallback as p, useEffect as m, useMemo as h, useState as g } from "react";
-import _ from "@mui/icons-material/Menu";
-//#region src/components/page/ErrorPageCommon.tsx
-var v = ({ error: e }) => /* @__PURE__ */ u(t, {
-	sx: {
-		alignItems: "center",
-		display: "flex",
-		flexDirection: "column",
-		justifyContent: "center",
-		width: "100%"
-	},
-	children: [
-		/* @__PURE__ */ l(t, {
-			sx: { padding: 1 },
-			children: /* @__PURE__ */ l(a, {
-				variant: "h1",
-				children: s`Something went wrong`
-			})
-		}),
-		/* @__PURE__ */ l(t, {
-			sx: { padding: 1 },
-			children: /* @__PURE__ */ l(a, {
-				variant: "body2",
-				children: e instanceof Error ? e.message : s`An unexpected error occurred.`
-			})
-		}),
-		/* @__PURE__ */ u(t, {
-			sx: { padding: 1 },
-			children: [/* @__PURE__ */ l(a, {
-				variant: "h6",
-				children: s`Details for our technicians`
-			}), /* @__PURE__ */ l(t, {
-				component: "pre",
-				sx: { fontSize: "0.8rem" },
-				children: e?.stack
-			})]
-		})
-	]
-}), y = d({
-	isDrawerOpen: !1,
-	isNoInteraction: !1,
-	setIsDrawerOpen: () => null,
-	setIsNoInteraction: () => null
-}), b = ({ children: e, drawerComponent: n, headerComponent: r, isNoInteraction: i }) => {
-	let a = o(), { isDrawerOpen: s, setIsNoInteraction: c } = f(y);
-	return m(() => {
-		c(!!i);
-	}, [i, c]), /* @__PURE__ */ u(t, {
-		sx: {
-			display: "flex",
-			flexDirection: "column",
-			height: "100vh",
-			overflow: "hidden",
-			position: "relative",
-			width: "100vw"
-		},
-		children: [r, /* @__PURE__ */ u(t, {
-			sx: {
-				display: "flex",
-				flex: 1,
-				height: "calc(100vh - 56px)",
-				overflow: "hidden",
-				position: "relative",
-				width: "100%"
-			},
-			children: [n, /* @__PURE__ */ l(t, {
-				component: "main",
-				sx: {
-					flexGrow: 1,
-					height: "100%",
-					overflow: "hidden",
-					position: "relative",
-					transition: () => a.transitions.create(["margin", "width"], {
-						duration: a.transitions.duration.leavingScreen,
-						easing: a.transitions.easing.sharp
-					}),
-					width: s ? "calc(100% - 340px)" : "100%"
-				},
-				children: e
-			})]
-		})]
-	});
-}, x = ({ children: e }) => {
-	let [t, n] = g(!1), [r, i] = g(!1), a = h(() => ({
-		isDrawerOpen: t,
-		isNoInteraction: r,
-		setIsDrawerOpen: n,
-		setIsNoInteraction: i
-	}), [t, r]);
-	return /* @__PURE__ */ l(y, {
-		value: a,
-		children: e
-	});
-}, S = ({ children: e }) => {
-	let { isDrawerOpen: t } = f(y);
-	return /* @__PURE__ */ l(n, {
-		anchor: "left",
-		open: t,
-		sx: {
-			"& .MuiDrawer-paper": {
-				height: "calc(100% - 56px)",
-				overflowY: "auto",
-				top: "56px",
-				width: 340
-			},
-			flexShrink: 0,
-			width: t ? 340 : 0
-		},
-		variant: "persistent",
-		children: e
-	});
-}, C = ({ centerComponent: n, icon: o, rightComponent: s, title: d }) => {
-	let { isDrawerOpen: m, isNoInteraction: h, setIsDrawerOpen: g } = f(y), v = p(() => {
-		g(!m);
-	}, [m, g]);
-	return /* @__PURE__ */ l(e, {
-		elevation: 1,
-		position: "static",
-		sx: {
-			backgroundColor: "primary.main",
-			color: "#FFFFFF",
-			height: 56,
-			justifyContent: "center",
-			zIndex: (e) => e.zIndex.drawer + 1
-		},
-		children: /* @__PURE__ */ u(i, {
-			sx: {
-				display: "flex",
-				justifyContent: "space-between",
-				px: 2
-			},
-			variant: "dense",
-			children: [
-				/* @__PURE__ */ u(t, {
-					sx: {
-						alignItems: "center",
-						display: "flex",
-						gap: 1.5
-					},
-					children: [
-						!h && /* @__PURE__ */ l(r, {
-							"aria-label": "open drawer",
-							color: "inherit",
-							edge: "start",
-							onClick: v,
-							size: "small",
-							children: /* @__PURE__ */ l(_, {})
-						}),
-						o && /* @__PURE__ */ l(c, { children: o }),
-						/* @__PURE__ */ l(a, {
-							component: "div",
-							noWrap: !0,
-							sx: {
-								color: "inherit",
-								fontSize: "1.05rem",
-								fontWeight: 700,
-								letterSpacing: "-0.01em"
-							},
-							variant: "h6",
-							children: d
-						}),
-						/* @__PURE__ */ l(a, {
-							sx: {
-								backgroundColor: "rgba(255, 255, 255, 0.15)",
-								borderRadius: 1,
-								display: {
-									sm: "inline-block",
-									xs: "none"
-								},
-								fontSize: "0.7rem",
-								fontWeight: 600,
-								px: 1,
-								py: .25
-							},
-							variant: "caption",
-							children: "Loculus Tool"
-						})
-					]
-				}),
-				/* @__PURE__ */ l(t, {
-					sx: {
-						alignItems: "center",
-						display: "flex",
-						gap: 1
-					},
-					children: n
-				}),
-				!h && /* @__PURE__ */ l(t, {
-					sx: {
-						alignItems: "center",
-						display: "flex",
-						gap: 1
-					},
-					children: s
-				})
-			]
-		})
-	});
-};
-//#endregion
-export { v as ErrorPageCommon, b as PageCommon, y as PageCommonContext, x as PageCommonContextProvider, S as PageCommonDrawer, C as PageCommonHeader };
-
-//# sourceMappingURL=index.js.map

package/dist/components/page/index.js.map

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-{"version":3,"file":"index.js","names":[],"sources":["../../../src/components/page/ErrorPageCommon.tsx","../../../src/components/page/PageCommonContext.ts","../../../src/components/page/PageCommon.tsx","../../../src/components/page/PageCommonContextProvider.tsx","../../../src/components/page/PageCommonDrawer.tsx","../../../src/components/page/PageCommonHeader.tsx"],"sourcesContent":["import {\n  Box,\n  Typography,\n} from '@mui/material';\nimport { t } from 'i18next';\n\nexport type ErrorPageCommonProps = {\n  error: unknown;\n};\n\nexport const ErrorPageCommon = ({ error }: ErrorPageCommonProps) => {\n  return (\n    <Box\n      sx={{\n        alignItems: 'center',\n        display: 'flex',\n        flexDirection: 'column',\n        justifyContent: 'center',\n        width: '100%',\n      }}\n    >\n      <Box sx={{ padding: 1 }}>\n        <Typography\n          variant={'h1'}\n        >\n          {t`Something went wrong`}\n        </Typography>\n      </Box>\n      <Box sx={{ padding: 1 }}>\n        <Typography\n          variant={'body2'}\n        >\n          {error instanceof Error ? error.message : t`An unexpected error occurred.`}\n        </Typography>\n      </Box>\n      <Box sx={{ padding: 1 }}>\n        <Typography variant={'h6'}>\n          {t`Details for our technicians`}\n        </Typography>\n        <Box\n          component={'pre'}\n          sx={{\n            fontSize: '0.8rem',\n          }}\n        >\n          {(error as Error)?.stack}\n        </Box>\n      </Box>\n    </Box>\n  );\n};\n","import { createContext } from 'react';\n\nexport type PageCommonContextData = {\n  readonly isDrawerOpen: boolean;\n  readonly isNoInteraction: boolean;\n  readonly setIsDrawerOpen: (open: boolean) => void;\n  readonly setIsNoInteraction: (open: boolean) => void;\n};\n\nexport const PageCommonContext = createContext<PageCommonContextData>({\n  isDrawerOpen: false,\n  isNoInteraction: false,\n  setIsDrawerOpen: () => null,\n  setIsNoInteraction: () => null,\n});\n","import {\n  Box,\n  useTheme,\n} from '@mui/material';\nimport {\n  use,\n  useEffect,\n} from 'react';\nimport type { ReactNode } from 'react';\n\nimport { DRAWER_WIDTH } from '../../constants/page';\n\nimport { PageCommonContext } from './PageCommonContext';\n\nexport type PageCommonProps = {\n  readonly children: ReactNode;\n  readonly drawerComponent?: ReactNode;\n  readonly headerComponent?: ReactNode;\n  readonly isNoInteraction?: boolean;\n};\n\n\nexport const PageCommon = ({ children, drawerComponent, headerComponent, isNoInteraction }: PageCommonProps) => {\n  const theme = useTheme();\n  const { isDrawerOpen, setIsNoInteraction } = use(PageCommonContext);\n\n  useEffect(() => {\n    setIsNoInteraction(!!isNoInteraction);\n  }, [isNoInteraction, setIsNoInteraction]);\n\n  return (\n    <Box\n      sx={{\n        display: 'flex',\n        flexDirection: 'column',\n        height: '100vh',\n        overflow: 'hidden',\n        position: 'relative',\n        width: '100vw',\n      }}\n    >\n      {headerComponent}\n      {/* Main Body */}\n      <Box\n        sx={{\n          display: 'flex',\n          flex: 1,\n          height: 'calc(100vh - 56px)',\n          overflow: 'hidden',\n          position: 'relative',\n          width: '100%',\n        }}\n      >\n        {drawerComponent}\n        <Box\n          component={'main'}\n          sx={{\n            flexGrow: 1,\n            height: '100%',\n            overflow: 'hidden',\n            position: 'relative',\n            transition: () =>\n              theme.transitions.create(['margin', 'width'], {\n                duration: theme.transitions.duration.leavingScreen,\n                easing: theme.transitions.easing.sharp,\n              }),\n            width: isDrawerOpen ? `calc(100% - ${DRAWER_WIDTH}px)` : '100%',\n          }}\n        >\n          {children}\n        </Box>\n\n      </Box>\n    </Box>\n  );\n};\n","import {\n  useMemo,\n  useState,\n} from 'react';\nimport type { PropsWithChildren } from 'react';\n\nimport type { PageCommonContextData } from './PageCommonContext';\nimport { PageCommonContext } from './PageCommonContext';\n\nexport type PageCommonContextProviderProps = PropsWithChildren;\n\nexport const PageCommonContextProvider = ({ children }: PageCommonContextProviderProps) => {\n  const [isDrawerOpen, setIsDrawerOpen] = useState(false);\n  const [isNoInteraction, setIsNoInteraction] = useState(false);\n\n  const contextValue = useMemo<PageCommonContextData>(() => {\n    return {\n      isDrawerOpen,\n      isNoInteraction,\n      setIsDrawerOpen,\n      setIsNoInteraction,\n    };\n  }, [isDrawerOpen, isNoInteraction]);\n\n  return (\n    <PageCommonContext value={contextValue}>\n      { children }\n    </PageCommonContext>\n  );\n};\n","import { Drawer } from '@mui/material';\nimport { use } from 'react';\nimport type { ReactNode } from 'react';\n\nimport { DRAWER_WIDTH } from '../../constants/page';\n\nimport { PageCommonContext } from './PageCommonContext';\n\nexport type PageCommonDrawerProps = {\n  readonly children: ReactNode;\n};\n\nexport const PageCommonDrawer = ({ children }: PageCommonDrawerProps) => {\n  const { isDrawerOpen } = use(PageCommonContext);\n\n  return (\n    <Drawer\n      anchor={'left'}\n      open={isDrawerOpen}\n      sx={{\n        '& .MuiDrawer-paper': {\n          height: 'calc(100% - 56px)',\n          overflowY: 'auto',\n          top: '56px',\n          width: DRAWER_WIDTH,\n        },\n        flexShrink: 0,\n        width: isDrawerOpen ? DRAWER_WIDTH : 0,\n      }}\n      variant={'persistent'}\n    >\n      {children}\n    </Drawer>\n  );\n};\n","import type { ReactNode } from 'react';\nimport {\n  use,\n  useCallback,\n} from 'react';\nimport {\n  AppBar,\n  Box,\n  IconButton,\n  Toolbar,\n  Typography,\n} from '@mui/material';\nimport MenuIcon from '@mui/icons-material/Menu';\n\nimport { PageCommonContext } from './PageCommonContext';\n\nexport type PageCommonHeaderProps = {\n  readonly centerComponent?: ReactNode;\n  readonly icon?: ReactNode;\n  readonly rightComponent?: ReactNode;\n  readonly title: string;\n};\n\nexport const PageCommonHeader = ({ centerComponent, icon, rightComponent, title }: PageCommonHeaderProps) => {\n  const { isDrawerOpen, isNoInteraction, setIsDrawerOpen } = use(PageCommonContext);\n\n  const onToggleDrawerButtonClick = useCallback(() => {\n    setIsDrawerOpen(!isDrawerOpen);\n  }, [isDrawerOpen, setIsDrawerOpen]);\n\n  return (\n    <AppBar\n      elevation={1}\n      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'inherit', fontSize: '1.05rem', fontWeight: 700, letterSpacing: '-0.01em' }}\n            variant={'h6'}\n          >\n            {title}\n          </Typography>\n          <Typography\n            sx={{\n              backgroundColor: 'rgba(255, 255, 255, 0.15)',\n              borderRadius: 1,\n              display: { sm: 'inline-block', xs: 'none' },\n              fontSize: '0.7rem',\n              fontWeight: 600,\n              px: 1,\n              py: 0.25,\n            }}\n            variant={'caption'}\n          >\n            {'Loculus Tool'}\n          </Typography>\n        </Box>\n        <Box sx={{ alignItems: 'center', display: 'flex', gap: 1 }}>\n          {centerComponent}\n        </Box>\n        {!isNoInteraction && (\n          <Box sx={{ alignItems: 'center', display: 'flex', gap: 1 }}>\n            {rightComponent}\n          </Box>\n        )}\n      </Toolbar>\n    </AppBar>\n  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package/dist/constants/page.js

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-//#region src/constants/page.ts
-var e = 340;
-//#endregion
-export { e as DRAWER_WIDTH };
-
-//# sourceMappingURL=page.js.map

package/dist/constants/page.js.map

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package/dist/models/fasta.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"fasta.js","names":[],"sources":["../../src/models/fasta.ts"],"sourcesContent":["export enum LOADING_STATUS {\n  ERROR = 'ERROR',\n  IDLE = 'IDLE',\n  LOADING = 'LOADING',\n  SUCCESS = 'SUCCESS',\n}\n\nexport type FastaParseResult = {\n  error?: string;\n  expectedLength: number;\n  invalidSequences?: { id: string; length: number }[];\n  isAligned: boolean;\n  sequences: FastaSequence[];\n};\n\nexport type FastaSequence = {\n  accessionVersion: string;\n  header: string;\n  id: string;\n  length: number;\n  sequence: string;\n};\n"],"mappings":";AAAA,IAAY,IAAL,yBAAA,GAAA;QACL,EAAA,QAAA,SACA,EAAA,OAAA,QACA,EAAA,UAAA,WACA,EAAA,UAAA;AACF,EAAA,CAAA,CAAA"}