@rhydb/rhydb-wasm 0.16.1 → 0.17.1

package/README.md

@@ -21,13 +21,28 @@ The WASM build supports raw and `.zst` preprocessing inputs. The native `.xz` in
 
 Browser queries use a smaller materialization cutoff than native RhyDB to keep intermediate batches within browser memory limits, especially when projecting full nucleotide sequences.
 
+## 32-bit and 64-bit variants
+
+RhyDB ships two WebAssembly builds:
+
+- **32-bit (default)**: the standard build. Works in all WebAssembly runtimes. Its memory is
+  capped at 2 GiB (Emscripten's default `MAXIMUM_MEMORY`; the 32-bit address space cannot exceed
+  4 GiB in any case).
+- **64-bit (wasm64 / MEMORY64)**: raises the memory ceiling to 16 GiB so larger datasets fit in the
+  browser. It is larger and somewhat slower, and requires a memory64-capable runtime (recent
+  Chrome/Firefox and Node 24+; Safari does not yet support it). Use it when a dataset needs more
+  than the 32-bit build's 2 GiB.
+
 ## Artifacts
 
-Building the WASM target creates these files relative to the RhyDB repository root:
+Building the WASM targets creates these files relative to the RhyDB repository root:
 
 - `wasm/dist/rhydb_wasm.js`: ES module loader generated by Emscripten. Import this from browser code.
 - `wasm/dist/rhydb_wasm.d.ts`: Autogenerated type declarations.
 - `wasm/dist/rhydb_wasm.wasm`: compiled RhyDB C++ code and linked dependencies.
+- `wasm/dist/wasm64/rhydb_wasm.{js,d.ts,wasm}`: the 64-bit variant, same file names in a `wasm64/`
+  subdirectory. Each loader fetches its own `rhydb_wasm.wasm` relative to itself, so the two
+  variants coexist without renaming.
 
 All files must be served by the web app. The JavaScript loader fetches the `.wasm` file at runtime.
 
@@ -47,6 +62,14 @@ import createRhydbModule from "@rhydb/rhydb-wasm";
 const rhydb = await createRhydbModule();
 ```
 
+To use the 64-bit variant, import the `./wasm64` subpath instead. The API is identical; only import it from a memory64-capable runtime:
+
+```js
+import createRhydbModule from "@rhydb/rhydb-wasm/wasm64";
+
+const rhydb = await createRhydbModule();
+```
+
 The `.wasm` file ships alongside `rhydb_wasm.js` and must be resolvable by your bundler so the loader can fetch it at runtime. The package version matches the RhyDB release version.
 
 The current build uses pthreads, so the page serving the module must be cross-origin isolated. Pthreads are the POSIX thread API that Emscripten maps to Web Workers, and RhyDB uses them because its dependencies and query execution are built around threaded native code. Serve it over HTTP with these headers:
@@ -92,10 +115,15 @@ Prerequisites:
 From the RhyDB repository root, build the WASM artifacts:
 
 ```sh
-make wasm
+make wasm     # 32-bit build -> wasm/dist/
+make wasm64   # 64-bit (wasm64) build -> wasm/dist/wasm64/
 ```
 
-The compatibility wrapper `./wasm/scripts/build-wasm.sh` also calls `make wasm`. The Makefile writes the Emscripten Conan profile to `build/wasm/conanprofile-emscripten`, installs dependencies into `build/wasm`, configures CMake with `emcmake`, builds `rhydb_wasm`, and copies the artifacts to `wasm/dist`.
+For each variant the Makefile writes the Emscripten Conan profile to
+`build/<variant>/conanprofile-emscripten`, installs dependencies into `build/<variant>`, configures
+CMake with the Conan-generated toolchain (via the `wasm` / `wasm64` preset in `CMakePresets.json`),
+builds `rhydb_wasm`, and copies the artifacts to `wasm/dist` (the 64-bit variant into
+`wasm/dist/wasm64`).
 
 ## Tests
 
@@ -107,7 +135,8 @@ state through `save`/`load`. Run it with:
 make wasm-test
 ```
 
-This builds `rhydb_wasm` first if necessary, then runs `node --test wasm/test/*.test.mjs`.
+This builds both variants first if necessary, then runs `node --test wasm/test/*.test.mts`.
+The suite runs every test against the 32-bit and the 64-bit build.
 
 ## Example App
 

package/dist/rhydb_wasm.d.ts

@@ -217,23 +217,13 @@ interface WasmModule {
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb6schema11TableSchemaEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__28optionalIN5rhydb6schema16ColumnIdentifierEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb6schema16ColumnIdentifierEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
+  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb6schema8DataTypeEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__26vectorIN5rhydb6schema16ColumnIdentifierENS4_9allocatorIS8_EEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column20StringColumnMetadataEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb6common22BidirectionalStringMapEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__26vectorINS4_12basic_stringIcNS4_11char_traitsIcEENS4_9allocatorIcEEEENS9_ISB_EEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__28optionalIN5rhydb6common9PhyloTreeEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb6common9PhyloTreeEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column31DictionaryEncodedColumnMetadataEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__28optionalIN5rhydb6common19LineageTreeAndIdMapEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb6common19LineageTreeAndIdMapEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb6common11LineageTreeEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__26vectorINS5_IjNS4_9allocatorIjEEEENS6_IS8_EEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__26vectorIjNS4_9allocatorIjEEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__213unordered_mapIjNS4_8optionalIjEENS4_4hashIjEENS4_8equal_toIjEENS4_9allocatorINS4_4pairIKjS7_EEEEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__24pairIKjNS4_8optionalIjEEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__28optionalIjEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__213unordered_mapIjjNS4_4hashIjEENS4_8equal_toIjEENS4_9allocatorINS4_4pairIKjjEEEEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__24pairIKjjEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column14ColumnMetadataEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column22SequenceColumnMetadataINS4_10NucleotideEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__26vectorIN5rhydb10Nucleotide6SymbolENS4_9allocatorIS8_EEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
@@ -247,23 +237,13 @@ interface WasmModule {
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb6schema11TableSchemaEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__28optionalIN5rhydb6schema16ColumnIdentifierEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb6schema16ColumnIdentifierEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
+  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb6schema8DataTypeEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__26vectorIN5rhydb6schema16ColumnIdentifierENS4_9allocatorIS8_EEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__210shared_ptrIN5rhydb7storage6column20StringColumnMetadataEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb6common22BidirectionalStringMapEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__26vectorINS4_12basic_stringIcNS4_11char_traitsIcEENS4_9allocatorIcEEEENS9_ISB_EEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__28optionalIN5rhydb6common9PhyloTreeEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb6common9PhyloTreeEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
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-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__28optionalIN5rhydb6common19LineageTreeAndIdMapEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb6common19LineageTreeAndIdMapEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb6common11LineageTreeEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__26vectorINS5_IjNS4_9allocatorIjEEEENS6_IS8_EEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__26vectorIjNS4_9allocatorIjEEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__213unordered_mapIjNS4_8optionalIjEENS4_4hashIjEENS4_8equal_toIjEENS4_9allocatorINS4_4pairIKjS7_EEEEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__24pairIKjNS4_8optionalIjEEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__28optionalIjEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__213unordered_mapIjjNS4_4hashIjEENS4_8equal_toIjEENS4_9allocatorINS4_4pairIKjjEEEEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
-  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__24pairIKjjEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__210shared_ptrIN5rhydb7storage6column14ColumnMetadataEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__210shared_ptrIN5rhydb7storage6column22SequenceColumnMetadataINS6_10NucleotideEEEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__26vectorIN5rhydb10Nucleotide6SymbolENS4_9allocatorIS8_EEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
@@ -282,11 +262,10 @@ interface WasmModule {
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__25dequeIN5rhydb7storage6buffer4PageENS4_9allocatorIS9_EEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column23DictionaryEncodedColumnEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column18ChunkedValueBufferIjEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
+  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__26vectorINS5_IjNS4_9allocatorIjEEEENS6_IS8_EEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
+  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__26vectorIjNS4_9allocatorIjEEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__213unordered_mapIjN7roaring7RoaringENS4_4hashIjEENS4_8equal_toIjEENS4_9allocatorINS4_4pairIKjS7_EEEEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveENSt3__24pairIKjN7roaring7RoaringEEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
-  __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage12LineageIndexEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
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   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column10BoolColumnEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
   __ZNK5boost7archive6detail11oserializerINS0_15binary_oarchiveEN5rhydb7storage6column13NumericColumnIiEEE16save_object_dataERNS1_14basic_oarchiveEPKv(_0: number, _1: number, _2: number): void;
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@@ -351,11 +330,10 @@ interface WasmModule {
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__25dequeIN5rhydb7storage6buffer4PageENS4_9allocatorIS9_EEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb7storage6column23DictionaryEncodedColumnEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveEN5rhydb7storage6column18ChunkedValueBufferIjEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
+  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__26vectorINS5_IjNS4_9allocatorIjEEEENS6_IS8_EEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
+  __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__26vectorIjNS4_9allocatorIjEEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__213unordered_mapIjN7roaring7RoaringENS4_4hashIjEENS4_8equal_toIjEENS4_9allocatorINS4_4pairIKjS7_EEEEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
   __ZNK5boost7archive6detail11iserializerINS0_15binary_iarchiveENSt3__24pairIKjN7roaring7RoaringEEEE16load_object_dataERNS1_14basic_iarchiveEPvj(_0: number, _1: number, _2: number, _3: number): void;
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