@rethinkhealth/hl7v2-parser 0.2.6 → 0.2.7

package/dist/index.js

@@ -52,8 +52,9 @@ function createParserCore() {
   let comp = null;
   let currentSub = null;
   let segmentHasContent = false;
-  const openSegment = () => {
-    seg = { type: "segment", children: [] };
+  let lastContentEnd = null;
+  const openSegment = (start) => {
+    seg = { type: "segment", children: [], position: { start, end: start } };
     root.children.push(seg);
     field = null;
     rep = null;
@@ -61,65 +62,100 @@ function createParserCore() {
     currentSub = null;
     segmentHasContent = false;
   };
-  const ensureSegment = () => {
+  const ensureSegment = (start) => {
     if (!seg) {
-      openSegment();
+      openSegment(start);
     }
   };
-  const openField = () => {
-    ensureSegment();
-    field = { type: "field", children: [] };
+  const openField = (start) => {
+    ensureSegment(start);
+    field = { type: "field", children: [], position: { start, end: start } };
     seg.children.push(field);
-    rep = { type: "field-repetition", children: [] };
+    rep = {
+      type: "field-repetition",
+      children: [],
+      position: { start, end: start }
+    };
     field.children.push(rep);
-    comp = { type: "component", children: [] };
+    comp = { type: "component", children: [], position: { start, end: start } };
     rep.children.push(comp);
     currentSub = null;
     segmentHasContent = true;
   };
-  const openRepetition = () => {
+  const openRepetition = (start) => {
     if (!field) {
-      openField();
+      openField(start);
     }
-    rep = { type: "field-repetition", children: [] };
+    rep = {
+      type: "field-repetition",
+      children: [],
+      position: { start, end: start }
+    };
     field.children.push(rep);
-    comp = { type: "component", children: [] };
+    comp = { type: "component", children: [], position: { start, end: start } };
     rep.children.push(comp);
     currentSub = null;
     segmentHasContent = true;
   };
-  const openComponent = () => {
+  const openComponent = (start) => {
     if (!field) {
-      openField();
+      openField(start);
     }
     if (!rep) {
-      rep = { type: "field-repetition", children: [] };
+      rep = {
+        type: "field-repetition",
+        children: [],
+        position: { start, end: start }
+      };
       field.children.push(rep);
     }
-    comp = { type: "component", children: [] };
+    comp = { type: "component", children: [], position: { start, end: start } };
     rep.children.push(comp);
     currentSub = null;
     segmentHasContent = true;
   };
-  const ensureForText = () => {
+  const ensureForText = (start) => {
     if (!field) {
-      openField();
+      openField(start);
     }
     if (!rep) {
-      openRepetition();
+      openRepetition(start);
     }
     if (!comp) {
-      openComponent();
+      openComponent(start);
     }
     if (!currentSub) {
-      currentSub = { type: "subcomponent", value: "" };
+      currentSub = {
+        type: "subcomponent",
+        value: "",
+        position: { start, end: start }
+      };
       comp.children.push(currentSub);
       segmentHasContent = true;
     }
   };
+  const updatePositionsToEnd = (endPos) => {
+    if (currentSub?.position) {
+      currentSub.position.end = endPos;
+    }
+    if (comp?.position) {
+      comp.position.end = endPos;
+    }
+    if (rep?.position) {
+      rep.position.end = endPos;
+    }
+    if (field?.position) {
+      field.position.end = endPos;
+    }
+    if (seg?.position) {
+      seg.position.end = endPos;
+    }
+  };
   const processToken = (tok) => {
     switch (tok.type) {
       case "SEGMENT_END": {
+        const endPos = lastContentEnd || tok.position.start;
+        updatePositionsToEnd(endPos);
         dropTrailingEmptyFieldIfPresent();
         seg = null;
         field = null;
@@ -127,41 +163,56 @@ function createParserCore() {
         comp = null;
         currentSub = null;
         segmentHasContent = false;
+        lastContentEnd = null;
         return;
       }
       case "FIELD_DELIM": {
+        lastContentEnd = tok.position.end;
         if (!field) {
-          openField();
-          comp.children.push({ type: "subcomponent", value: "" });
+          openField(tok.position.start);
+          comp.children.push({
+            type: "subcomponent",
+            value: "",
+            position: { start: tok.position.start, end: tok.position.start }
+          });
           segmentHasContent = true;
         }
-        openField();
+        openField(tok.position.end);
         return;
       }
       case "REPETITION_DELIM": {
+        lastContentEnd = tok.position.end;
         if (!field) {
-          openField();
+          openField(tok.position.start);
         }
-        openRepetition();
+        openRepetition(tok.position.end);
         return;
       }
       case "COMPONENT_DELIM": {
-        openComponent();
+        lastContentEnd = tok.position.end;
+        openComponent(tok.position.end);
         return;
       }
       case "SUBCOMP_DELIM": {
+        lastContentEnd = tok.position.end;
         if (!comp) {
-          openComponent();
+          openComponent(tok.position.start);
         }
-        currentSub = { type: "subcomponent", value: "" };
+        currentSub = {
+          type: "subcomponent",
+          value: "",
+          position: { start: tok.position.end, end: tok.position.end }
+        };
         comp.children.push(currentSub);
         segmentHasContent = true;
         return;
       }
       case "TEXT": {
         const val = tok.value ?? "";
-        ensureForText();
+        ensureForText(tok.position.start);
         currentSub.value += val;
+        updatePositionsToEnd(tok.position.end);
+        lastContentEnd = tok.position.end;
         segmentHasContent = true;
         return;
       }
@@ -171,6 +222,9 @@ function createParserCore() {
     }
   };
   const finalize = () => {
+    if (lastContentEnd && seg) {
+      updatePositionsToEnd(lastContentEnd);
+    }
     dropTrailingEmptyFieldIfPresent();
     if (seg && !segmentHasContent) {
       root.children.pop();

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/parser.ts","../src/preprocessor.ts","../src/processor.ts","../src/tokenizer.ts","../src/utils.ts"],"sourcesContent":["import type { Root } from '@rethinkhealth/hl7v2-ast';\nimport { DEFAULT_DELIMITERS } from '@rethinkhealth/hl7v2-utils';\nimport type { Plugin } from 'unified';\nimport { defaultPreprocessors, runPreprocessors } from './preprocessor';\nimport { parseHL7v2FromIterator } from './processor';\nimport { HL7v2Tokenizer } from './tokenizer';\nimport type { ParseOptions, ParserContext } from './types';\nimport { iterateTokenizerSync } from './utils';\n\nexport function parseHL7v2(input: string, opts: ParseOptions): Root {\n  let ctx: ParserContext = {\n    input,\n    delimiters: opts.delimiters || DEFAULT_DELIMITERS,\n  };\n  // Run preprocessing\n  ctx = runPreprocessors(ctx, opts.preprocess || defaultPreprocessors);\n  // Run tokenizer\n  const tokenizer = new HL7v2Tokenizer();\n  // Reset tokenizer.\n  tokenizer.reset(ctx);\n  // Parse\n  return parseHL7v2FromIterator(iterateTokenizerSync(tokenizer));\n}\n\nconst hl7v2Parser: Plugin<[ParseOptions?], string, Root> = function (\n  options = {}\n) {\n  this.parser = (document: string) => parseHL7v2(document, options);\n};\n\nexport default hl7v2Parser;\n","import type { ParserContext, PreprocessorStep } from './types';\n\n// PreprocessorStep is declared in `types.ts` to avoid circular imports\n\n/**\n * Step: strip UTF-8 BOM.\n */\nexport const stripBOM: PreprocessorStep = (ctx) => {\n  if (ctx.input.charCodeAt(0) === 0xfe_ff) {\n    ctx.input = ctx.input.slice(1);\n  }\n  return ctx;\n};\n\n/**\n * Step: normalize newlines to CR (\\r).\n */\nexport const normalizeNewlines: PreprocessorStep = (ctx) => {\n  ctx.input = ctx.input.replace(/\\r?\\n/g, '\\r');\n  return ctx;\n};\n\n/**\n * Step: auto-detect delimiters from MSH.\n */\nexport const detectDelimiters: PreprocessorStep = (ctx) => {\n  if (ctx.input.startsWith('MSH')) {\n    const fieldDelim = ctx.input.charAt(3) || '|';\n    const enc = ctx.input.slice(4, 8);\n    const component = enc.charAt(0) || '^';\n    const repetition = enc.charAt(1) || '~';\n    const _escape = enc.charAt(2) || '\\\\';\n    const subcomponent = enc.charAt(3) || '&';\n\n    ctx.delimiters = {\n      field: fieldDelim,\n      component,\n      repetition,\n      escape: _escape,\n      subcomponent,\n      segment: '\\r',\n    };\n  }\n  return ctx;\n};\n\n/**\n * Default preprocessing pipeline.\n */\nexport const defaultPreprocessors: PreprocessorStep[] = [\n  stripBOM,\n  normalizeNewlines,\n  detectDelimiters,\n];\n\n/**\n * Run the pipeline to initialize ParserContext.\n */\nexport function runPreprocessors(\n  ctx: ParserContext,\n  steps: PreprocessorStep[]\n): ParserContext {\n  for (const step of steps) {\n    // biome-ignore lint/style/noParameterAssign: this is necessary to keep no-copy\n    ctx = step(ctx);\n  }\n\n  return ctx;\n}\n","// src/parser.ts\n\nimport type {\n  Component,\n  Field,\n  FieldRepetition,\n  Root,\n  Segment,\n  Subcomponent,\n} from '@rethinkhealth/hl7v2-ast';\nimport type { Token } from './types';\n\n// Shared core: process a single token into mutable parse state\nfunction createParserCore() {\n  const root: Root = { type: 'root', children: [] };\n\n  let seg: Segment | null = null;\n  let field: Field | null = null;\n  let rep: FieldRepetition | null = null;\n  let comp: Component | null = null;\n  let currentSub: Subcomponent | null = null;\n  let segmentHasContent = false;\n\n  const openSegment = () => {\n    seg = { type: 'segment', children: [] };\n    root.children.push(seg);\n    field = null;\n    rep = null;\n    comp = null;\n    currentSub = null;\n    segmentHasContent = false;\n  };\n\n  const ensureSegment = () => {\n    if (!seg) {\n      openSegment();\n    }\n  };\n\n  const openField = () => {\n    ensureSegment();\n    field = { type: 'field', children: [] };\n    // biome-ignore lint/style/noNonNullAssertion: seg is ensured above\n    seg!.children.push(field);\n    rep = { type: 'field-repetition', children: [] };\n    field.children.push(rep);\n    comp = { type: 'component', children: [] };\n    rep.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const openRepetition = () => {\n    if (!field) {\n      openField();\n    }\n    rep = { type: 'field-repetition', children: [] };\n    // biome-ignore lint/style/noNonNullAssertion: field is ensured above\n    field!.children.push(rep);\n    comp = { type: 'component', children: [] };\n    rep.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const openComponent = () => {\n    if (!field) {\n      openField();\n    }\n    if (!rep) {\n      rep = { type: 'field-repetition', children: [] };\n      // biome-ignore lint/style/noNonNullAssertion: field is ensured above\n      field!.children.push(rep);\n    }\n    comp = { type: 'component', children: [] };\n    // biome-ignore lint/style/noNonNullAssertion: rep is ensured above\n    rep!.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const ensureForText = () => {\n    if (!field) {\n      openField();\n    }\n    if (!rep) {\n      openRepetition();\n    }\n    if (!comp) {\n      openComponent();\n    }\n    if (!currentSub) {\n      currentSub = { type: 'subcomponent', value: '' };\n      // biome-ignore lint/style/noNonNullAssertion: comp is ensured above\n      comp!.children.push(currentSub);\n      segmentHasContent = true;\n    }\n  };\n\n  const processToken = (tok: Token) => {\n    switch (tok.type) {\n      case 'SEGMENT_END': {\n        dropTrailingEmptyFieldIfPresent();\n        // Close current segment (if any) and reset; do not auto-open next segment\n        seg = null;\n        field = null;\n        rep = null;\n        comp = null;\n        currentSub = null;\n        segmentHasContent = false;\n        return;\n      }\n      case 'FIELD_DELIM': {\n        // Leading field delimiter implies an empty first field\n        if (!field) {\n          // Open an empty first field and record an empty subcomponent slot\n          openField();\n          // biome-ignore lint/style/noNonNullAssertion: comp is initialized in openField\n          comp!.children.push({ type: 'subcomponent', value: '' });\n          segmentHasContent = true;\n        }\n        openField();\n        return;\n      }\n      case 'REPETITION_DELIM': {\n        if (!field) {\n          openField();\n        }\n        openRepetition();\n        return;\n      }\n      case 'COMPONENT_DELIM': {\n        openComponent();\n        return;\n      }\n      case 'SUBCOMP_DELIM': {\n        if (!comp) {\n          openComponent();\n        }\n        // Start a new empty subcomponent slot\n        currentSub = { type: 'subcomponent', value: '' };\n        // biome-ignore lint/style/noNonNullAssertion: comp is ensured above\n        comp!.children.push(currentSub);\n        segmentHasContent = true;\n        return;\n      }\n      case 'TEXT': {\n        const val = tok.value ?? '';\n        ensureForText();\n        // biome-ignore lint/style/noNonNullAssertion: ensured above\n        currentSub!.value += val;\n        segmentHasContent = true;\n        return;\n      }\n      default: {\n        throw new Error(`Unexpected token type: ${tok.type}`);\n      }\n    }\n  };\n\n  // Do not pre-open a segment; lazily open upon first non-SEGMENT_END token.\n\n  const finalize = () => {\n    // Handle input that ends without an explicit segment delimiter as above.\n    dropTrailingEmptyFieldIfPresent();\n    if (seg && !segmentHasContent) {\n      // Drop trailing empty segment if no content was added\n      root.children.pop();\n    }\n    return root;\n  };\n\n  function dropTrailingEmptyFieldIfPresent() {\n    if (!seg || seg.children.length === 0) {\n      return;\n    }\n    // Drop only the final trailing empty field (created by the last delimiter),\n    // preserving any intentional empty fields immediately before it.\n    const lastField = seg.children.at(-1) as Field;\n    const hasAnySubcomponents = lastField.children.some((r) =>\n      r.children.some((c) => c.children.length > 0)\n    );\n    if (!hasAnySubcomponents) {\n      seg.children.pop();\n    }\n  }\n\n  return { processToken, finalize, root };\n}\n\n// Sync convenience wrapper over a sync Iterable token source\nexport function parseHL7v2FromIterator(tokens: Iterable<Token>): Root {\n  const core = createParserCore();\n  for (const tok of tokens) {\n    core.processToken(tok);\n  }\n  return core.finalize();\n}\n","// src/tokenizer.ts\nimport type { HL7v2Delimiters } from '@rethinkhealth/hl7v2-utils';\nimport type {\n  ParserContext,\n  Position,\n  Token,\n  Tokenizer,\n  TokenType,\n} from './types';\n\nexport class HL7v2Tokenizer implements Tokenizer, Iterable<Token> {\n  private input = '';\n  private i = 0;\n  private line = 1;\n  private col = 1;\n  private delims!: HL7v2Delimiters;\n\n  // Only-run-once MSH bootstrap at the start of the file\n  private didMshBootstrap = false;\n  private pendingBootstrap: null | Array<\n    | { kind: 'TEXT'; value: string; advance: number }\n    | { kind: 'FIELD_DELIM'; advance: number }\n  > = null; // queue to emit TEXT('MSH'), FIELD_DELIM, TEXT('^~\\\\&')\n\n  reset(ctx: ParserContext) {\n    this.input = ctx.input;\n    this.delims = ctx.delimiters;\n    this.i = 0;\n    this.line = 1;\n    this.col = 1;\n    this.didMshBootstrap = false;\n    this.pendingBootstrap = null;\n\n    // Prepare a one-time bootstrap if file starts with MSH\n    if (this.input.startsWith('MSH')) {\n      // Precompute MSH and MSH.2; MSH.1 is the field delimiter char at index 3\n      const msh = this._slice(0, 3);\n      const msh1 = this._slice(3, 4); // the field delimiter char at index 3\n      const msh2 = this._slice(4, 8); // may be shorter than 4 if truncated\n      this.pendingBootstrap = [\n        { kind: 'TEXT', value: msh, advance: msh.length },\n        { kind: 'FIELD_DELIM', advance: 0 },\n        { kind: 'TEXT', value: msh1, advance: msh1.length },\n        { kind: 'FIELD_DELIM', advance: 0 },\n        { kind: 'TEXT', value: msh2, advance: msh2.length },\n      ];\n      // NOTE: we have not advanced indices yet; we will as we emit tokens\n    }\n  }\n\n  // biome-ignore lint/complexity/noExcessiveCognitiveComplexity: The cognitive complexity of this method is justified because it must handle the HL7v2 MSH segment bootstrap logic and multiple tokenization cases in a single method for performance and maintainability.\n  next(): Token | null {\n    const s = this.input;\n    const n = s.length;\n    if (this.i >= n && !this.pendingBootstrap?.length) {\n      return null;\n    }\n\n    const start = { offset: this.i, line: this.line, column: this.col };\n\n    // ---- One-time MSH bootstrap at file start ----\n    if (!this.didMshBootstrap && this.pendingBootstrap) {\n      const step = this.pendingBootstrap.shift();\n      if (step) {\n        if (step.kind === 'TEXT') {\n          const take = Math.min(step.advance, n - this.i);\n          const out = step.value.slice(0, take);\n          this._fastAdvance(out);\n          if (this.pendingBootstrap.length === 0) {\n            this.pendingBootstrap = null;\n            this.didMshBootstrap = true;\n          }\n          return this._tok('TEXT', out, start);\n        }\n        // FIELD_DELIM: advance exactly one char (the delimiter) and emit a FIELD_DELIM token\n        this._advance(Math.min(step.advance, n - this.i));\n        if (this.pendingBootstrap.length === 0) {\n          this.pendingBootstrap = null;\n          this.didMshBootstrap = true;\n        }\n        return this._tok('FIELD_DELIM', undefined, start);\n      }\n    }\n\n    // ---- Normal tokenization (delimiters + text) ----\n    if (this.i >= n) {\n      return null;\n    }\n    const ch = s.charAt(this.i);\n\n    if (ch === this.delims.segment) {\n      this._advance(1, true);\n      return this._tok('SEGMENT_END', undefined, start);\n    }\n    if (ch === this.delims.field) {\n      this._advance(1);\n      return this._tok('FIELD_DELIM', undefined, start);\n    }\n    if (ch === this.delims.repetition) {\n      this._advance(1);\n      return this._tok('REPETITION_DELIM', undefined, start);\n    }\n    if (ch === this.delims.component) {\n      this._advance(1);\n      return this._tok('COMPONENT_DELIM', undefined, start);\n    }\n    if (ch === this.delims.subcomponent) {\n      this._advance(1);\n      return this._tok('SUBCOMP_DELIM', undefined, start);\n    }\n\n    // TEXT until next delimiter or end\n    let j = this.i;\n    const seg = this.delims.segment,\n      fld = this.delims.field,\n      rep = this.delims.repetition,\n      cmp = this.delims.component,\n      sub = this.delims.subcomponent;\n\n    while (j < s.length) {\n      const c = s.charAt(j);\n      if (c === seg || c === fld || c === rep || c === cmp || c === sub) {\n        break;\n      }\n      j++;\n    }\n\n    const val = s.slice(this.i, j);\n    this._fastAdvance(val);\n    return this._tok('TEXT', val, start);\n  }\n\n  // ---- helpers ----\n  private _slice(start: number, end: number): string {\n    return this.input.slice(start, Math.min(end, this.input.length));\n  }\n\n  private _advance(n: number, isNewline = false) {\n    this.i += n;\n    if (isNewline) {\n      this.line += 1;\n      this.col = 1;\n    } else {\n      this.col += n;\n    }\n  }\n\n  private _fastAdvance(chunk: string) {\n    const parts = chunk.split('\\r');\n    if (parts.length > 1) {\n      this.line += parts.length - 1;\n      this.col = (parts.at(-1)?.length ?? 0) + 1;\n    } else {\n      this.col += chunk.length;\n    }\n    this.i += chunk.length;\n  }\n\n  private _tok(\n    type: TokenType,\n    value: string | undefined,\n    start: Position['start']\n  ): Token {\n    const end = { offset: this.i, line: this.line, column: this.col };\n    return { type, value, position: { start, end } };\n  }\n\n  // Iterable protocol (sync)\n  [Symbol.iterator](): Iterator<Token> {\n    return {\n      next: () => {\n        const t = this.next();\n        if (t == null) {\n          return { done: true, value: undefined as unknown as Token };\n        }\n        return { done: false, value: t };\n      },\n    };\n  }\n\n  // Async iteration support removed to keep the API synchronous.\n}\n","import type { Token, Tokenizer } from './types';\n\nexport function* iterateTokenizerSync(t: Tokenizer): Iterable<Token> {\n  for (let tok = t.next(); tok; tok = t.next()) {\n    yield tok;\n  }\n}\n\n// Removed async stream support; the parser now operates synchronously 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package/dist/processor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"processor.d.ts","sourceRoot":"","sources":["../src/processor.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAIV,IAAI,EAGL,MAAM,0BAA0B,CAAC;AAClC,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAC;AAqLrC,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,QAAQ,CAAC,KAAK,CAAC,GAAG,IAAI,CAMpE"}
+{"version":3,"file":"processor.d.ts","sourceRoot":"","sources":["../src/processor.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAIV,IAAI,EAGL,MAAM,0BAA0B,CAAC;AAClC,OAAO,KAAK,EAAY,KAAK,EAAE,MAAM,SAAS,CAAC;AA6O/C,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,QAAQ,CAAC,KAAK,CAAC,GAAG,IAAI,CAMpE"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@rethinkhealth/hl7v2-parser",
   "description": "hl7v2 plugin to parse hl7v2 messages",
-  "version": "0.2.6",
+  "version": "0.2.7",
   "license": "MIT",
   "author": {
     "name": "Melek Somai",
@@ -17,7 +17,7 @@
   },
   "dependencies": {
     "unified": "11.0.1",
-    "@rethinkhealth/hl7v2-utils": "0.2.6"
+    "@rethinkhealth/hl7v2-utils": "0.2.7"
   },
   "devDependencies": {
     "@types/node": "22.15.31",
@@ -27,7 +27,7 @@
     "tsup": "8.5.0",
     "typescript": "^5.8.3",
     "vitest": "^3.2.4",
-    "@rethinkhealth/hl7v2-ast": "0.2.6",
+    "@rethinkhealth/hl7v2-ast": "0.2.7",
     "@rethinkhealth/testing": "0.0.0",
     "@rethinkhealth/tsconfig": "0.0.0"
   },