@rethinkhealth/hl7v2-parser 0.2.17 → 0.2.18

package/README.md

@@ -41,6 +41,43 @@ const tree = unified()
 console.log(tree);
 ```
 
+### Custom Delimiters
+
+You can specify custom delimiters for parsing non-standard HL7v2 messages. The `delimiters` option accepts a partial object, so you only need to specify the delimiters you want to override:
+
+```typescript
+import { unified } from 'unified';
+import { hl7v2Parser } from '@rethinkhealth/hl7v2-parser';
+
+// Override only the segment delimiter
+const tree = unified()
+  .use(hl7v2Parser, {
+    delimiters: {
+      segment: '\n', // Use newline instead of carriage return
+    }
+  })
+  .parse(message);
+
+// Override multiple delimiters
+const customTree = unified()
+  .use(hl7v2Parser, {
+    delimiters: {
+      field: '$',
+      component: '%',
+      segment: '\n',
+    }
+  })
+  .parse(customMessage);
+```
+
+The default delimiters are:
+- `field`: `|`
+- `component`: `^`
+- `repetition`: `~`
+- `subcomponent`: `&`
+- `escape`: `\`
+- `segment`: `\r`
+
 ## Contributing
 
 We welcome contributions! Please see our [Contributing Guide][github-contributing] for more details.

package/dist/index.js

@@ -419,7 +419,10 @@ function* iterateTokenizerSync(t) {
 function parseHL7v2(input, opts) {
   let ctx = {
     input,
-    delimiters: opts.delimiters || DEFAULT_DELIMITERS2
+    delimiters: {
+      ...DEFAULT_DELIMITERS2,
+      ...opts.delimiters
+    }
   };
   ctx = runPreprocessors(ctx, opts.preprocess || defaultPreprocessors);
   const tokenizer = new HL7v2Tokenizer();

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/parser.ts","../src/preprocessor.ts","../src/processor.ts","../src/tokenizer.ts"],"sourcesContent":["import type { Root } from \"@rethinkhealth/hl7v2-ast\";\nimport { DEFAULT_DELIMITERS } from \"@rethinkhealth/hl7v2-utils\";\nimport type { Plugin } from \"unified\";\nimport { defaultPreprocessors, runPreprocessors } from \"./preprocessor\";\nimport { parseHL7v2FromIterator } from \"./processor\";\nimport { HL7v2Tokenizer } from \"./tokenizer\";\nimport type { ParseOptions, ParserContext, Token, Tokenizer } from \"./types\";\n\nfunction* iterateTokenizerSync(t: Tokenizer): Iterable<Token> {\n  for (let tok = t.next(); tok; tok = t.next()) {\n    yield tok;\n  }\n}\n\nexport function parseHL7v2(input: string, opts: ParseOptions): Root {\n  let ctx: ParserContext = {\n    input,\n    delimiters: opts.delimiters || DEFAULT_DELIMITERS,\n  };\n  // Run preprocessing\n  ctx = runPreprocessors(ctx, opts.preprocess || defaultPreprocessors);\n  // Run tokenizer\n  const tokenizer = new HL7v2Tokenizer();\n  // Reset tokenizer.\n  tokenizer.reset(ctx);\n  // Parse\n  return parseHL7v2FromIterator(iterateTokenizerSync(tokenizer), ctx);\n}\n\nconst hl7v2Parser: Plugin<[ParseOptions?], string, Root> = function (\n  options = {}\n) {\n  this.parser = (document: string) => parseHL7v2(document, options);\n};\n\nexport default hl7v2Parser;\n","import { DEFAULT_DELIMITERS } from \"@rethinkhealth/hl7v2-utils\";\nimport type { ParserContext, PreprocessorStep } from \"./types\";\n\n// PreprocessorStep is declared in `types.ts` to avoid circular imports\n\n/**\n * Step: strip UTF-8 BOM.\n */\nexport const stripBOM: PreprocessorStep = (ctx) => {\n  if (ctx.input.charCodeAt(0) === 0xfe_ff) {\n    ctx.input = ctx.input.slice(1);\n  }\n  return ctx;\n};\n\n/**\n * Step: normalize newlines to the default delimiters.\n */\nexport const normalizeNewlines: PreprocessorStep = (ctx) => {\n  ctx.input = ctx.input.replace(/\\r?\\n/g, ctx.delimiters.segment);\n  return ctx;\n};\n\n/**\n * Step: auto-detect delimiters from MSH.\n */\nexport const detectDelimiters: PreprocessorStep = (ctx) => {\n  if (ctx.input.startsWith(\"MSH\")) {\n    const field = ctx.input.charAt(3) || DEFAULT_DELIMITERS.field;\n    const enc = ctx.input.slice(4, 8);\n    const component = enc.charAt(0) || DEFAULT_DELIMITERS.component;\n    const repetition = enc.charAt(1) || DEFAULT_DELIMITERS.repetition;\n    const _escape = enc.charAt(2) || DEFAULT_DELIMITERS.escape;\n    const subcomponent = enc.charAt(3) || DEFAULT_DELIMITERS.subcomponent;\n    const segment = DEFAULT_DELIMITERS.segment;\n\n    ctx.delimiters = {\n      field,\n      component,\n      repetition,\n      escape: _escape,\n      subcomponent,\n      segment,\n    };\n  }\n  return ctx;\n};\n\n/**\n * Default preprocessing pipeline.\n */\nexport const defaultPreprocessors: PreprocessorStep[] = [\n  stripBOM,\n  normalizeNewlines,\n  detectDelimiters,\n];\n\n/**\n * Run the pipeline to initialize ParserContext.\n */\nexport function runPreprocessors(\n  ctx: ParserContext,\n  steps: PreprocessorStep[]\n): ParserContext {\n  for (const step of steps) {\n    // biome-ignore lint/style/noParameterAssign: this is necessary to keep no-copy\n    ctx = step(ctx);\n  }\n\n  return ctx;\n}\n","// src/parser.ts\n\nimport type {\n  Component,\n  Field,\n  FieldRepetition,\n  Root,\n  Segment,\n  Subcomponent,\n} from \"@rethinkhealth/hl7v2-ast\";\nimport { isEmptyNode } from \"@rethinkhealth/hl7v2-utils\";\nimport type { ParserContext, Position, Token } from \"./types\";\n\n// Shared core: process a single token into mutable parse state\nfunction createParserCore(ctx: ParserContext) {\n  const root: Root = {\n    type: \"root\",\n    children: [],\n    data: {\n      delimiters: ctx.delimiters,\n    },\n  };\n\n  let seg: Segment | null = null;\n  let field: Field | null = null;\n  let rep: FieldRepetition | null = null;\n  let comp: Component | null = null;\n  let currentSub: Subcomponent | null = null;\n  let segmentHasContent = false;\n  let lastContentEnd: Position[\"end\"] | null = null;\n\n  const openSegment = (start: Position[\"start\"]) => {\n    seg = { type: \"segment\", children: [], position: { start, end: start } };\n    root.children.push(seg);\n    field = null;\n    rep = null;\n    comp = null;\n    currentSub = null;\n    segmentHasContent = false;\n  };\n\n  const ensureSegment = (start: Position[\"start\"]) => {\n    if (!seg) {\n      openSegment(start);\n    }\n  };\n\n  const openField = (start: Position[\"start\"]) => {\n    ensureSegment(start);\n    field = { type: \"field\", children: [], position: { start, end: start } };\n    // biome-ignore lint/style/noNonNullAssertion: seg is ensured above\n    seg!.children.push(field);\n    rep = {\n      type: \"field-repetition\",\n      children: [],\n      position: { start, end: start },\n    };\n    field.children.push(rep);\n    comp = { type: \"component\", children: [], position: { start, end: start } };\n    rep.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const openRepetition = (start: Position[\"start\"]) => {\n    if (!field) {\n      openField(start);\n    }\n    rep = {\n      type: \"field-repetition\",\n      children: [],\n      position: { start, end: start },\n    };\n    // biome-ignore lint/style/noNonNullAssertion: field is ensured above\n    field!.children.push(rep);\n    comp = { type: \"component\", children: [], position: { start, end: start } };\n    rep.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const openComponent = (start: Position[\"start\"]) => {\n    if (!field) {\n      openField(start);\n    }\n    if (!rep) {\n      rep = {\n        type: \"field-repetition\",\n        children: [],\n        position: { start, end: start },\n      };\n      // biome-ignore lint/style/noNonNullAssertion: field is ensured above\n      field!.children.push(rep);\n    }\n    comp = { type: \"component\", children: [], position: { start, end: start } };\n    // biome-ignore lint/style/noNonNullAssertion: rep is ensured above\n    rep!.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const ensureForText = (start: Position[\"start\"]) => {\n    if (!field) {\n      openField(start);\n    }\n    if (!rep) {\n      openRepetition(start);\n    }\n    if (!comp) {\n      openComponent(start);\n    }\n    if (!currentSub) {\n      currentSub = {\n        type: \"subcomponent\",\n        value: \"\",\n        position: { start, end: start },\n      };\n      // biome-ignore lint/style/noNonNullAssertion: comp is ensured above\n      comp!.children.push(currentSub);\n      segmentHasContent = true;\n    }\n  };\n\n  const updatePositionsToEnd = (endPos: Position[\"end\"]) => {\n    if (currentSub?.position) {\n      currentSub.position.end = endPos;\n    }\n    if (comp?.position) {\n      comp.position.end = endPos;\n    }\n    if (rep?.position) {\n      rep.position.end = endPos;\n    }\n    if (field?.position) {\n      field.position.end = endPos;\n    }\n    if (seg?.position) {\n      seg.position.end = endPos;\n    }\n  };\n\n  const processToken = (tok: Token) => {\n    switch (tok.type) {\n      case \"SEGMENT_END\": {\n        // Use the last content position instead of the segment delimiter position\n        const endPos = lastContentEnd || tok.position.start;\n        updatePositionsToEnd(endPos);\n        dropTrailingEmptyFieldIfPresent();\n        // Close current segment (if any) and reset; do not auto-open next segment\n        seg = null;\n        field = null;\n        rep = null;\n        comp = null;\n        currentSub = null;\n        segmentHasContent = false;\n        lastContentEnd = null;\n        return;\n      }\n      case \"FIELD_DELIM\": {\n        lastContentEnd = tok.position.end;\n        // Leading field delimiter implies an empty first field\n        if (!field) {\n          // Open an empty first field and record an empty subcomponent slot\n          openField(tok.position.start);\n          // biome-ignore lint/style/noNonNullAssertion: comp is initialized in openField\n          comp!.children.push({\n            type: \"subcomponent\",\n            value: \"\",\n            position: { start: tok.position.start, end: tok.position.start },\n          });\n          segmentHasContent = true;\n        }\n        openField(tok.position.end);\n        return;\n      }\n      case \"REPETITION_DELIM\": {\n        lastContentEnd = tok.position.end;\n        if (!field) {\n          openField(tok.position.start);\n        }\n        openRepetition(tok.position.end);\n        return;\n      }\n      case \"COMPONENT_DELIM\": {\n        lastContentEnd = tok.position.end;\n        openComponent(tok.position.end);\n        return;\n      }\n      case \"SUBCOMP_DELIM\": {\n        lastContentEnd = tok.position.end;\n        if (!comp) {\n          openComponent(tok.position.start);\n        }\n        // Start a new empty subcomponent slot\n        currentSub = {\n          type: \"subcomponent\",\n          value: \"\",\n          position: { start: tok.position.end, end: tok.position.end },\n        };\n        // biome-ignore lint/style/noNonNullAssertion: comp is ensured above\n        comp!.children.push(currentSub);\n        segmentHasContent = true;\n        return;\n      }\n      case \"TEXT\": {\n        const val = tok.value ?? \"\";\n        ensureForText(tok.position.start);\n        // biome-ignore lint/style/noNonNullAssertion: ensured above\n        currentSub!.value += val;\n        updatePositionsToEnd(tok.position.end);\n        lastContentEnd = tok.position.end;\n        segmentHasContent = true;\n        return;\n      }\n      default: {\n        throw new Error(`Unexpected token type: ${tok.type}`);\n      }\n    }\n  };\n\n  // Do not pre-open a segment; lazily open upon first non-SEGMENT_END token.\n\n  const finalize = () => {\n    // Handle input that ends without an explicit segment delimiter as above.\n    if (lastContentEnd && seg) {\n      updatePositionsToEnd(lastContentEnd);\n    }\n    dropTrailingEmptyFieldIfPresent();\n    if (seg && !segmentHasContent) {\n      // Drop trailing empty segment if no content was added\n      root.children.pop();\n    }\n    return root;\n  };\n\n  function dropTrailingEmptyFieldIfPresent() {\n    if (!seg || seg.children.length === 0) {\n      return;\n    }\n    // Drop only the final trailing empty field (created by the last delimiter),\n    // preserving any intentional empty fields immediately before it.\n    const lastField = seg.children.at(-1) as Field;\n    if (isEmptyNode(lastField)) {\n      seg.children.pop();\n    }\n  }\n\n  return { processToken, finalize, root };\n}\n\n// Sync convenience wrapper over a sync Iterable token source\nexport function parseHL7v2FromIterator(\n  tokens: Iterable<Token>,\n  ctx: ParserContext\n): Root {\n  const core = createParserCore(ctx);\n  for (const tok of tokens) {\n    core.processToken(tok);\n  }\n  return core.finalize();\n}\n","// src/tokenizer.ts\nimport type { Delimiters } from \"@rethinkhealth/hl7v2-ast\";\nimport type {\n  ParserContext,\n  Position,\n  Token,\n  Tokenizer,\n  TokenType,\n} from \"./types\";\n\nconst MSH_SEGMENT_START = 0;\nconst MSH_SEGMENT_END = 3;\nconst MSH_FIELD_SEPERATOR_START = 3;\nconst MSH_FIELD_SEPERATOR_END = 4;\nconst MSH_FIELD_DELIMITER_START = 4;\nconst MSH_FIELD_DELIMITER_END = 8;\n\nexport class HL7v2Tokenizer implements Tokenizer, Iterable<Token> {\n  private input = \"\";\n  private i = 0;\n  private line = 1;\n  private col = 1;\n  private delims!: Delimiters;\n\n  // Only-run-once MSH bootstrap at the start of the file\n  private didMshBootstrap = false;\n  private pendingBootstrap: null | Array<\n    | { kind: \"TEXT\"; value: string; advance: number }\n    | { kind: \"FIELD_DELIM\"; advance: number }\n  > = null; // queue to emit TEXT('MSH'), FIELD_DELIM, TEXT('^~\\\\&')\n\n  reset(ctx: ParserContext) {\n    this.input = ctx.input;\n    this.delims = ctx.delimiters;\n    this.i = 0;\n    this.line = 1;\n    this.col = 1;\n    this.didMshBootstrap = false;\n    this.pendingBootstrap = null;\n\n    // Prepare a one-time bootstrap if file starts with MSH\n    if (this.input.startsWith(\"MSH\")) {\n      // Precompute MSH and MSH.2; MSH.1 is the field delimiter char at index 3\n      const msh = this._slice(MSH_SEGMENT_START, MSH_SEGMENT_END);\n      const msh1 = this._slice(\n        MSH_FIELD_SEPERATOR_START,\n        MSH_FIELD_SEPERATOR_END\n      ); // the field delimiter char at index 3\n      const msh2 = this._slice(\n        MSH_FIELD_DELIMITER_START,\n        MSH_FIELD_DELIMITER_END\n      ); // may be shorter than 4 if truncated\n      this.pendingBootstrap = [\n        { kind: \"TEXT\", value: msh, advance: msh.length },\n        { kind: \"FIELD_DELIM\", advance: 0 },\n        { kind: \"TEXT\", value: msh1, advance: msh1.length },\n        { kind: \"FIELD_DELIM\", advance: 0 },\n        { kind: \"TEXT\", value: msh2, advance: msh2.length },\n      ];\n      // NOTE: we have not advanced indices yet; we will as we emit tokens\n    }\n  }\n\n  // biome-ignore lint/complexity/noExcessiveCognitiveComplexity: The cognitive complexity of this method is justified because it must handle the HL7v2 MSH segment bootstrap logic and multiple tokenization cases in a single method for performance and maintainability.\n  next(): Token | null {\n    const s = this.input;\n    const n = s.length;\n    if (this.i >= n && !this.pendingBootstrap?.length) {\n      return null;\n    }\n\n    const start = { offset: this.i, line: this.line, column: this.col };\n\n    // ---- One-time MSH bootstrap at file start ----\n    if (!this.didMshBootstrap && this.pendingBootstrap) {\n      const step = this.pendingBootstrap.shift();\n      if (step) {\n        if (step.kind === \"TEXT\") {\n          const take = Math.min(step.advance, n - this.i);\n          const out = step.value.slice(0, take);\n          this._fastAdvance(out);\n          if (this.pendingBootstrap.length === 0) {\n            this.pendingBootstrap = null;\n            this.didMshBootstrap = true;\n          }\n          return this._tok(\"TEXT\", out, start);\n        }\n        // FIELD_DELIM: advance exactly one char (the delimiter) and emit a FIELD_DELIM token\n        this._advance(Math.min(step.advance, n - this.i));\n        if (this.pendingBootstrap.length === 0) {\n          this.pendingBootstrap = null;\n          this.didMshBootstrap = true;\n        }\n        return this._tok(\"FIELD_DELIM\", undefined, start);\n      }\n    }\n\n    // ---- Normal tokenization (delimiters + text) ----\n    if (this.i >= n) {\n      return null;\n    }\n    const ch = s.charAt(this.i);\n\n    if (ch === this.delims.segment) {\n      this._advance(1, true);\n      return this._tok(\"SEGMENT_END\", undefined, start);\n    }\n    if (ch === this.delims.field) {\n      this._advance(1);\n      return this._tok(\"FIELD_DELIM\", undefined, start);\n    }\n    if (ch === this.delims.repetition) {\n      this._advance(1);\n      return this._tok(\"REPETITION_DELIM\", undefined, start);\n    }\n    if (ch === this.delims.component) {\n      this._advance(1);\n      return this._tok(\"COMPONENT_DELIM\", undefined, start);\n    }\n    if (ch === this.delims.subcomponent) {\n      this._advance(1);\n      return this._tok(\"SUBCOMP_DELIM\", undefined, start);\n    }\n\n    // TEXT until next delimiter or end\n    let j = this.i;\n    const seg = this.delims.segment,\n      fld = this.delims.field,\n      rep = this.delims.repetition,\n      cmp = this.delims.component,\n      sub = this.delims.subcomponent;\n\n    while (j < s.length) {\n      const c = s.charAt(j);\n      if (c === seg || c === fld || c === rep || c === cmp || c === sub) {\n        break;\n      }\n      j++;\n    }\n\n    const val = s.slice(this.i, j);\n    this._fastAdvance(val);\n    return this._tok(\"TEXT\", val, start);\n  }\n\n  // ---- helpers ----\n  private _slice(start: number, end: number): string {\n    return this.input.slice(start, Math.min(end, this.input.length));\n  }\n\n  private _advance(n: number, isNewline = false) {\n    this.i += n;\n    if (isNewline) {\n      this.line += 1;\n      this.col = 1;\n    } else {\n      this.col += n;\n    }\n  }\n\n  private _fastAdvance(chunk: string) {\n    const parts = chunk.split(this.delims.segment);\n    if (parts.length > 1) {\n      this.line += parts.length - 1;\n      this.col = (parts.at(-1)?.length ?? 0) + 1;\n    } else {\n      this.col += chunk.length;\n    }\n    this.i += chunk.length;\n  }\n\n  private _tok(\n    type: TokenType,\n    value: string | undefined,\n    start: Position[\"start\"]\n  ): Token {\n    const end = { offset: this.i, line: this.line, column: this.col };\n    return { type, value, position: { start, end } };\n  }\n\n  // Iterable protocol (sync)\n  [Symbol.iterator](): Iterator<Token> {\n    return {\n      next: () => {\n        const t = this.next();\n        if (t == null) {\n          return { done: true, value: undefined as unknown as Token };\n        }\n        return { done: false, value: t };\n      },\n    };\n  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ctx.input.replace(/\\r?\\n/g, ctx.delimiters.segment);\n  return ctx;\n};\n\n/**\n * Step: auto-detect delimiters from MSH.\n */\nexport const detectDelimiters: PreprocessorStep = (ctx) => {\n  if (ctx.input.startsWith(\"MSH\")) {\n    const field = ctx.input.charAt(3) || DEFAULT_DELIMITERS.field;\n    const enc = ctx.input.slice(4, 8);\n    const component = enc.charAt(0) || DEFAULT_DELIMITERS.component;\n    const repetition = enc.charAt(1) || DEFAULT_DELIMITERS.repetition;\n    const _escape = enc.charAt(2) || DEFAULT_DELIMITERS.escape;\n    const subcomponent = enc.charAt(3) || DEFAULT_DELIMITERS.subcomponent;\n    const segment = DEFAULT_DELIMITERS.segment;\n\n    ctx.delimiters = {\n      field,\n      component,\n      repetition,\n      escape: _escape,\n      subcomponent,\n      segment,\n    };\n  }\n  return ctx;\n};\n\n/**\n * Default preprocessing pipeline.\n */\nexport const defaultPreprocessors: PreprocessorStep[] = [\n  stripBOM,\n  normalizeNewlines,\n  detectDelimiters,\n];\n\n/**\n * Run the pipeline to initialize ParserContext.\n */\nexport function runPreprocessors(\n  ctx: ParserContext,\n  steps: PreprocessorStep[]\n): ParserContext {\n  for (const step of steps) {\n    // biome-ignore lint/style/noParameterAssign: this is necessary to keep no-copy\n    ctx = step(ctx);\n  }\n\n  return ctx;\n}\n","// src/parser.ts\n\nimport type {\n  Component,\n  Field,\n  FieldRepetition,\n  Root,\n  Segment,\n  Subcomponent,\n} from \"@rethinkhealth/hl7v2-ast\";\nimport { isEmptyNode } from \"@rethinkhealth/hl7v2-utils\";\nimport type { ParserContext, Position, Token } from \"./types\";\n\n// Shared core: process a single token into mutable parse state\nfunction createParserCore(ctx: ParserContext) {\n  const root: Root = {\n    type: \"root\",\n    children: [],\n    data: {\n      delimiters: ctx.delimiters,\n    },\n  };\n\n  let seg: Segment | null = null;\n  let field: Field | null = null;\n  let rep: FieldRepetition | null = null;\n  let comp: Component | null = null;\n  let currentSub: Subcomponent | null = null;\n  let segmentHasContent = false;\n  let lastContentEnd: Position[\"end\"] | null = null;\n\n  const openSegment = (start: Position[\"start\"]) => {\n    seg = { type: \"segment\", children: [], position: { start, end: start } };\n    root.children.push(seg);\n    field = null;\n    rep = null;\n    comp = null;\n    currentSub = null;\n    segmentHasContent = false;\n  };\n\n  const ensureSegment = (start: Position[\"start\"]) => {\n    if (!seg) {\n      openSegment(start);\n    }\n  };\n\n  const openField = (start: Position[\"start\"]) => {\n    ensureSegment(start);\n    field = { type: \"field\", children: [], position: { start, end: start } };\n    // biome-ignore lint/style/noNonNullAssertion: seg is ensured above\n    seg!.children.push(field);\n    rep = {\n      type: \"field-repetition\",\n      children: [],\n      position: { start, end: start },\n    };\n    field.children.push(rep);\n    comp = { type: \"component\", children: [], position: { start, end: start } };\n    rep.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const openRepetition = (start: Position[\"start\"]) => {\n    if (!field) {\n      openField(start);\n    }\n    rep = {\n      type: \"field-repetition\",\n      children: [],\n      position: { start, end: start },\n    };\n    // biome-ignore lint/style/noNonNullAssertion: field is ensured above\n    field!.children.push(rep);\n    comp = { type: \"component\", children: [], position: { start, end: start } };\n    rep.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const openComponent = (start: Position[\"start\"]) => {\n    if (!field) {\n      openField(start);\n    }\n    if (!rep) {\n      rep = {\n        type: \"field-repetition\",\n        children: [],\n        position: { start, end: start },\n      };\n      // biome-ignore lint/style/noNonNullAssertion: field is ensured above\n      field!.children.push(rep);\n    }\n    comp = { type: \"component\", children: [], position: { start, end: start } };\n    // biome-ignore lint/style/noNonNullAssertion: rep is ensured above\n    rep!.children.push(comp);\n    currentSub = null;\n    segmentHasContent = true;\n  };\n\n  const ensureForText = (start: Position[\"start\"]) => {\n    if (!field) {\n      openField(start);\n    }\n    if (!rep) {\n      openRepetition(start);\n    }\n    if (!comp) {\n      openComponent(start);\n    }\n    if (!currentSub) {\n      currentSub = {\n        type: \"subcomponent\",\n        value: \"\",\n        position: { start, end: start },\n      };\n      // biome-ignore lint/style/noNonNullAssertion: comp is ensured above\n      comp!.children.push(currentSub);\n      segmentHasContent = true;\n    }\n  };\n\n  const updatePositionsToEnd = (endPos: Position[\"end\"]) => {\n    if (currentSub?.position) {\n      currentSub.position.end = endPos;\n    }\n    if (comp?.position) {\n      comp.position.end = endPos;\n    }\n    if (rep?.position) {\n      rep.position.end = endPos;\n    }\n    if (field?.position) {\n      field.position.end = endPos;\n    }\n    if (seg?.position) {\n      seg.position.end = endPos;\n    }\n  };\n\n  const processToken = (tok: Token) => {\n    switch (tok.type) {\n      case \"SEGMENT_END\": {\n        // Use the last content position instead of the segment delimiter position\n        const endPos = lastContentEnd || tok.position.start;\n        updatePositionsToEnd(endPos);\n        dropTrailingEmptyFieldIfPresent();\n        // Close current segment (if any) and reset; do not auto-open next segment\n        seg = null;\n        field = null;\n        rep = null;\n        comp = null;\n        currentSub = null;\n        segmentHasContent = false;\n        lastContentEnd = null;\n        return;\n      }\n      case \"FIELD_DELIM\": {\n        lastContentEnd = tok.position.end;\n        // Leading field delimiter implies an empty first field\n        if (!field) {\n          // Open an empty first field and record an empty subcomponent slot\n          openField(tok.position.start);\n          // biome-ignore lint/style/noNonNullAssertion: comp is initialized in openField\n          comp!.children.push({\n            type: \"subcomponent\",\n            value: \"\",\n            position: { start: tok.position.start, end: tok.position.start },\n          });\n          segmentHasContent = true;\n        }\n        openField(tok.position.end);\n        return;\n      }\n      case \"REPETITION_DELIM\": {\n        lastContentEnd = tok.position.end;\n        if (!field) {\n          openField(tok.position.start);\n        }\n        openRepetition(tok.position.end);\n        return;\n      }\n      case \"COMPONENT_DELIM\": {\n        lastContentEnd = tok.position.end;\n        openComponent(tok.position.end);\n        return;\n      }\n      case \"SUBCOMP_DELIM\": {\n        lastContentEnd = tok.position.end;\n        if (!comp) {\n          openComponent(tok.position.start);\n        }\n        // Start a new empty subcomponent slot\n        currentSub = {\n          type: \"subcomponent\",\n          value: \"\",\n          position: { start: tok.position.end, end: tok.position.end },\n        };\n        // biome-ignore lint/style/noNonNullAssertion: comp is ensured above\n        comp!.children.push(currentSub);\n        segmentHasContent = true;\n        return;\n      }\n      case \"TEXT\": {\n        const val = tok.value ?? \"\";\n        ensureForText(tok.position.start);\n        // biome-ignore lint/style/noNonNullAssertion: ensured above\n        currentSub!.value += val;\n        updatePositionsToEnd(tok.position.end);\n        lastContentEnd = tok.position.end;\n        segmentHasContent = true;\n        return;\n      }\n      default: {\n        throw new Error(`Unexpected token type: ${tok.type}`);\n      }\n    }\n  };\n\n  // Do not pre-open a segment; lazily open upon first non-SEGMENT_END token.\n\n  const finalize = () => {\n    // Handle input that ends without an explicit segment delimiter as above.\n    if (lastContentEnd && seg) {\n      updatePositionsToEnd(lastContentEnd);\n    }\n    dropTrailingEmptyFieldIfPresent();\n    if (seg && !segmentHasContent) {\n      // Drop trailing empty segment if no content was added\n      root.children.pop();\n    }\n    return root;\n  };\n\n  function dropTrailingEmptyFieldIfPresent() {\n    if (!seg || seg.children.length === 0) {\n      return;\n    }\n    // Drop only the final trailing empty field (created by the last delimiter),\n    // preserving any intentional empty fields immediately before it.\n    const lastField = seg.children.at(-1) as Field;\n    if (isEmptyNode(lastField)) {\n      seg.children.pop();\n    }\n  }\n\n  return { processToken, finalize, root };\n}\n\n// Sync convenience wrapper over a sync Iterable token source\nexport function parseHL7v2FromIterator(\n  tokens: Iterable<Token>,\n  ctx: ParserContext\n): Root {\n  const core = createParserCore(ctx);\n  for (const tok of tokens) {\n    core.processToken(tok);\n  }\n  return core.finalize();\n}\n","// src/tokenizer.ts\nimport type { Delimiters } from \"@rethinkhealth/hl7v2-ast\";\nimport type {\n  ParserContext,\n  Position,\n  Token,\n  Tokenizer,\n  TokenType,\n} from \"./types\";\n\nconst MSH_SEGMENT_START = 0;\nconst MSH_SEGMENT_END = 3;\nconst MSH_FIELD_SEPERATOR_START = 3;\nconst MSH_FIELD_SEPERATOR_END = 4;\nconst MSH_FIELD_DELIMITER_START = 4;\nconst MSH_FIELD_DELIMITER_END = 8;\n\nexport class HL7v2Tokenizer implements Tokenizer, Iterable<Token> {\n  private input = \"\";\n  private i = 0;\n  private line = 1;\n  private col = 1;\n  private delims!: Delimiters;\n\n  // Only-run-once MSH bootstrap at the start of the file\n  private didMshBootstrap = false;\n  private pendingBootstrap: null | Array<\n    | { kind: \"TEXT\"; value: string; advance: number }\n    | { kind: \"FIELD_DELIM\"; advance: number }\n  > = null; // queue to emit TEXT('MSH'), FIELD_DELIM, TEXT('^~\\\\&')\n\n  reset(ctx: ParserContext) {\n    this.input = ctx.input;\n    this.delims = ctx.delimiters;\n    this.i = 0;\n    this.line = 1;\n    this.col = 1;\n    this.didMshBootstrap = false;\n    this.pendingBootstrap = null;\n\n    // Prepare a one-time bootstrap if file starts with MSH\n    if (this.input.startsWith(\"MSH\")) {\n      // Precompute MSH and MSH.2; MSH.1 is the field delimiter char at index 3\n      const msh = this._slice(MSH_SEGMENT_START, MSH_SEGMENT_END);\n      const msh1 = this._slice(\n        MSH_FIELD_SEPERATOR_START,\n        MSH_FIELD_SEPERATOR_END\n      ); // the field delimiter char at index 3\n      const msh2 = this._slice(\n        MSH_FIELD_DELIMITER_START,\n        MSH_FIELD_DELIMITER_END\n      ); // may be shorter than 4 if truncated\n      this.pendingBootstrap = [\n        { kind: \"TEXT\", value: msh, advance: msh.length },\n        { kind: \"FIELD_DELIM\", advance: 0 },\n        { kind: \"TEXT\", value: msh1, advance: msh1.length },\n        { kind: \"FIELD_DELIM\", advance: 0 },\n        { kind: \"TEXT\", value: msh2, advance: msh2.length },\n      ];\n      // NOTE: we have not advanced indices yet; we will as we emit tokens\n    }\n  }\n\n  // biome-ignore lint/complexity/noExcessiveCognitiveComplexity: The cognitive complexity of this method is justified because it must handle the HL7v2 MSH segment bootstrap logic and multiple tokenization cases in a single method for performance and maintainability.\n  next(): Token | null {\n    const s = this.input;\n    const n = s.length;\n    if (this.i >= n && !this.pendingBootstrap?.length) {\n      return null;\n    }\n\n    const start = { offset: this.i, line: this.line, column: this.col };\n\n    // ---- One-time MSH bootstrap at file start ----\n    if (!this.didMshBootstrap && this.pendingBootstrap) {\n      const step = this.pendingBootstrap.shift();\n      if (step) {\n        if (step.kind === \"TEXT\") {\n          const take = Math.min(step.advance, n - this.i);\n          const out = step.value.slice(0, take);\n          this._fastAdvance(out);\n          if (this.pendingBootstrap.length === 0) {\n            this.pendingBootstrap = null;\n            this.didMshBootstrap = true;\n          }\n          return this._tok(\"TEXT\", out, start);\n        }\n        // FIELD_DELIM: advance exactly one char (the delimiter) and emit a FIELD_DELIM token\n        this._advance(Math.min(step.advance, n - this.i));\n        if (this.pendingBootstrap.length === 0) {\n          this.pendingBootstrap = null;\n          this.didMshBootstrap = true;\n        }\n        return this._tok(\"FIELD_DELIM\", undefined, start);\n      }\n    }\n\n    // ---- Normal tokenization (delimiters + text) ----\n    if (this.i >= n) {\n      return null;\n    }\n    const ch = s.charAt(this.i);\n\n    if (ch === this.delims.segment) {\n      this._advance(1, true);\n      return this._tok(\"SEGMENT_END\", undefined, start);\n    }\n    if (ch === this.delims.field) {\n      this._advance(1);\n      return this._tok(\"FIELD_DELIM\", undefined, start);\n    }\n    if (ch === this.delims.repetition) {\n      this._advance(1);\n      return this._tok(\"REPETITION_DELIM\", undefined, start);\n    }\n    if (ch === this.delims.component) {\n      this._advance(1);\n      return this._tok(\"COMPONENT_DELIM\", undefined, start);\n    }\n    if (ch === this.delims.subcomponent) {\n      this._advance(1);\n      return this._tok(\"SUBCOMP_DELIM\", undefined, start);\n    }\n\n    // TEXT until next delimiter or end\n    let j = this.i;\n    const seg = this.delims.segment,\n      fld = this.delims.field,\n      rep = this.delims.repetition,\n      cmp = this.delims.component,\n      sub = this.delims.subcomponent;\n\n    while (j < s.length) {\n      const c = s.charAt(j);\n      if (c === seg || c === fld || c === rep || c === cmp || c === sub) {\n        break;\n      }\n      j++;\n    }\n\n    const val = s.slice(this.i, j);\n    this._fastAdvance(val);\n    return this._tok(\"TEXT\", val, start);\n  }\n\n  // ---- helpers ----\n  private _slice(start: number, end: number): string {\n    return this.input.slice(start, Math.min(end, this.input.length));\n  }\n\n  private _advance(n: number, isNewline = false) {\n    this.i += n;\n    if (isNewline) {\n      this.line += 1;\n      this.col = 1;\n    } else {\n      this.col += n;\n    }\n  }\n\n  private _fastAdvance(chunk: string) {\n    const parts = chunk.split(this.delims.segment);\n    if (parts.length > 1) {\n      this.line += parts.length - 1;\n      this.col = (parts.at(-1)?.length ?? 0) + 1;\n    } else {\n      this.col += chunk.length;\n    }\n    this.i += chunk.length;\n  }\n\n  private _tok(\n    type: TokenType,\n    value: string | undefined,\n    start: Position[\"start\"]\n  ): Token {\n    const end = { offset: this.i, line: this.line, column: this.col };\n    return { type, value, position: { start, end } };\n  }\n\n  // Iterable protocol (sync)\n  [Symbol.iterator](): Iterator<Token> {\n    return {\n      next: () => {\n        const t = this.next();\n        if (t == null) {\n          return { done: true, value: undefined as unknown as Token };\n        }\n        return { done: false, value: t };\n      },\n    };\n  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package/dist/parser.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"parser.d.ts","sourceRoot":"","sources":["../src/parser.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,0BAA0B,CAAC;AAErD,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,SAAS,CAAC;AAItC,OAAO,KAAK,EAAE,YAAY,EAAmC,MAAM,SAAS,CAAC;AAQ7E,wBAAgB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,YAAY,GAAG,IAAI,CAgBlE;AAED,QAAA,MAAM,WAAW,EAAE,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,MAAM,EAAE,IAAI,CAItD,CAAC;AAEF,eAAe,WAAW,CAAC"}

package/dist/types.d.ts

@@ -1,7 +1,7 @@
 import type { Delimiters } from "@rethinkhealth/hl7v2-ast";
 export type PreprocessorStep = (ctx: ParserContext) => ParserContext;
 export type ParseOptions = {
-    delimiters?: Delimiters;
+    delimiters?: Partial<Delimiters>;
     preprocess?: PreprocessorStep[];
 };
 export type ParserContext = {

package/dist/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../src/types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAI3D,MAAM,MAAM,gBAAgB,GAAG,CAAC,GAAG,EAAE,aAAa,KAAK,aAAa,CAAC;AAErE,MAAM,MAAM,YAAY,GAAG;IACzB,UAAU,CAAC,EAAE,OAAO,CAAC,UAAU,CAAC,CAAC;IAEjC,UAAU,CAAC,EAAE,gBAAgB,EAAE,CAAC;CACjC,CAAC;AAEF,MAAM,MAAM,aAAa,GAAG;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,UAAU,CAAC;IACvB,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACpC,CAAC;AAGF,MAAM,MAAM,QAAQ,GAAG;IACrB,KAAK,EAAE;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;IACxD,GAAG,EAAE;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;CACvD,CAAC;AAEF,MAAM,MAAM,KAAK,GAAG;IAClB,IAAI,EAAE,SAAS,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,QAAQ,CAAC;CACpB,CAAC;AAGF,MAAM,MAAM,SAAS,GACjB,eAAe,GACf,aAAa,GACb,aAAa,GACb,kBAAkB,GAClB,iBAAiB,GACjB,eAAe,GACf,MAAM,CAAC;AAEX,MAAM,MAAM,SAAS,GAAG;IACtB,KAAK,CAAC,GAAG,EAAE,aAAa,GAAG,IAAI,CAAC;IAChC,IAAI,IAAI,KAAK,GAAG,IAAI,CAAC;CACtB,CAAC"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@rethinkhealth/hl7v2-parser",
   "description": "hl7v2 plugin to parse hl7v2 messages",
-  "version": "0.2.17",
+  "version": "0.2.18",
   "license": "MIT",
   "author": {
     "name": "Melek Somai",
@@ -17,7 +17,7 @@
   },
   "dependencies": {
     "unified": "11.0.5",
-    "@rethinkhealth/hl7v2-utils": "0.2.17"
+    "@rethinkhealth/hl7v2-utils": "0.2.18"
   },
   "devDependencies": {
     "@types/node": "24.5.2",
@@ -26,9 +26,9 @@
     "tsup": "8.5.0",
     "typescript": "^5.8.3",
     "vitest": "^3.2.4",
-    "@rethinkhealth/hl7v2-ast": "0.2.17",
-    "@rethinkhealth/testing": "0.0.1",
-    "@rethinkhealth/tsconfig": "0.0.1"
+    "@rethinkhealth/hl7v2-ast": "0.2.18",
+    "@rethinkhealth/tsconfig": "0.0.1",
+    "@rethinkhealth/testing": "0.0.1"
   },
   "repository": "rethinkhealth/hl7v2.git",
   "homepage": "https://www.rethinkhealth.io/hl7v2/docs",