@researai/deepscientist 1.5.9 → 1.5.11

package/README.md

@@ -5,129 +5,113 @@
 </p>
 
 <p align="center">
-  Local-first research operating system with a Python runtime, an npm launcher,
-  one quest per Git repository, and shared web plus TUI surfaces.
+  <strong>DeepScientist is not just a long-running autonomous scientific discovery system. It is also a persistent research map that lives on your own machine.</strong>
 </p>
 
-## Install
-
-Install DeepScientist:
-
-```bash
-npm install -g @researai/deepscientist
-```
-
-For the best experience, we recommend using GPT-5.4 in `xhigh` mode (for example, via the $20 GPT Plus plan or the $200 GPT Pro plan); if you are in China, we recommend the MiniMax-M2.7 Token Plan (Max plan): https://platform.minimaxi.com/subscribe/token-plan
-
-## Start
-
-```bash
-ds
-```
-
-DeepScientist starts the local web workspace at `http://127.0.0.1:20999` by default.
-
-By default, DeepScientist keeps Codex on the standard profile: `approval_policy=on-request` and `sandbox_mode=workspace-write`. Use `--yolo` only when you want explicit full-access execution.
-
-Recommended command when you want the current directory as the home and Codex full-access execution:
-
-```bash
-ds --yolo --port 20999 --here
-```
-
-Parameter meanings:
-
-- `--yolo`: run Codex in YOLO mode, which sets `approval_policy=never` and `sandbox_mode=danger-full-access`
-- `--port 20999`: bind the local web workspace to port `20999`
-- `--here`: create or use `./DeepScientist` under the current working directory as the DeepScientist home
-
-On first start, `ds` will:
-
-- bootstrap a local `uv` runtime manager automatically if your machine does not already have one
-- use the bundled Codex CLI that ships with the npm package
-- still require you to complete Codex login once if your account is not ready yet
-
-If you want another port:
+<p align="center">
+  Local-first. Open-source. Git-backed. Built for verifiable computational research.
+</p>
 
-```bash
-ds --port 21000
-```
+<p align="center">
+  <a href="docs/en/README.md">English</a> | <a href="docs/zh/README.md">中文</a>
+</p>
 
-If you want YOLO mode on another port:
+<p align="center">
+  <a href="https://openreview.net/forum?id=cZFgsLq8Gs"><img alt="ICLR 2026" src="https://img.shields.io/badge/ICLR-2026-blue?style=for-the-badge&logo=openreview"></a>
+  <a href="LICENSE"><img alt="License Apache-2.0" src="https://img.shields.io/badge/License-Apache%202.0-yellow.svg?style=for-the-badge"></a>
+  <a href="https://www.python.org/"><img alt="Python 3.11+" src="https://img.shields.io/badge/Python-3.11%2B-blue?style=for-the-badge&logo=python&logoColor=white"></a>
+  <a href="https://www.npmjs.com/package/@researai/deepscientist"><img alt="npm @researai/deepscientist" src="https://img.shields.io/badge/npm-%40researai%2Fdeepscientist-CB3837?style=for-the-badge&logo=npm&logoColor=white"></a>
+  <a href="https://deepscientist.cc/"><img alt="Website deepscientist.cc" src="https://img.shields.io/badge/Website-deepscientist.cc-brightgreen?style=for-the-badge&logo=googlechrome&logoColor=white"></a>
+</p>
 
-```bash
-ds --yolo --port 21000
-```
+<p align="center">
+  <a href="docs/en/00_QUICK_START.md">Quick Start</a> •
+  <a href="docs/en/02_START_RESEARCH_GUIDE.md">Start Research Guide</a> •
+  <a href="docs/en/10_WEIXIN_CONNECTOR_GUIDE.md"><img src="assets/branding/connector-weixin.png" alt="Weixin" width="14" height="14" /> Weixin</a> •
+  <a href="docs/en/03_QQ_CONNECTOR_GUIDE.md"><img src="assets/branding/connector-qq.png" alt="QQ" width="14" height="14" /> QQ</a> •
+  <a href="docs/en/04_LINGZHU_CONNECTOR_GUIDE.md"><img src="assets/branding/connector-rokid.png" alt="Rokid" width="14" height="14" /> Rokid</a> •
+  <a href="https://openreview.net/forum?id=cZFgsLq8Gs">Paper</a>
+</p>
 
-If you want to bind on all interfaces:
+## About
 
-```bash
-ds --host 0.0.0.0 --port 21000
-```
+DeepScientist is not just a long-running autonomous scientific discovery system. It is also a persistent research map that lives on your own machine.
 
-DeepScientist now uses `uv` to manage a locked local Python runtime. If a conda environment is active and already provides Python `>=3.11`, `ds` prefers it automatically; otherwise it bootstraps a managed `uv` + Python toolchain under `~/DeepScientist/runtime/`.
+- See every branch.
+- Recover every lesson.
+- Compound every round.
 
-The default DeepScientist home is:
+**A research workspace you can actually inspect.** The frontend rebuilds a live [Canvas](docs/en/06_RUNTIME_AND_CANVAS.md) from Git branches, artifacts, connector traffic, and raw quest events, so progress stays visible as a navigable map instead of collapsing into one long chat log.
 
-- macOS / Linux: `~/DeepScientist`
-- Windows: `%USERPROFILE%\\DeepScientist`
+**Memory that survives failure.** Built-in [memory](docs/en/07_MEMORY_AND_MCP.md) turns paper notes, dead ends, route decisions, and recovered lessons into searchable project state that later rounds can pull back deliberately.
 
-Use `ds --home <path>` if you want to place the runtime somewhere else.
+**A self-evolving loop with real state.** Failed branches, reusable baselines, promoted lessons, and new evidence all feed the next round, so DeepScientist compounds research progress instead of restarting from zero.
 
-If you want to place the DeepScientist home under the current working directory, use:
+**A studio, not a sealed autopilot.** DeepScientist can drive a task end to end, but you can step in at any moment to redirect the plan, edit code, inspect files, or run the terminal yourself inside the same quest.
 
-```bash
-ds --here
-```
+DeepScientist is strong at:
 
-This is equivalent to launching with `ds --home "$PWD/DeepScientist"`.
+- reproducing baselines and keeping them reusable
+- reading papers, extracting concrete limitations, and generating hypotheses
+- running experiment branches, analysis campaigns, figures, and paper drafts
+- preserving both successful and failed results so the next round can start stronger
 
-Useful launch examples:
+DeepScientist is flexible and easy to use with:
 
-```bash
-ds --yolo --port 20999 --here
-ds --host 0.0.0.0 --port 21000
-ds --yolo --host 0.0.0.0 --port 21000 --here
-```
+- local-first, open-source, one-command install
+- Git-backed quest repositories, shared web workspace, Studio / Canvas, and TUI
+- workshop-style collaboration: let DeepScientist drive, or pause anytime to inspect, edit, and run commands yourself
+- Codex with `gpt-5.4` by default, plus external OpenAI-compatible inference endpoints
+- use DeepScientist anywhere: server via TUI, browser via Web, phone via Weixin or QQ, and even glasses via Rokid Glasses
+- one bound external connector per quest: [Weixin](docs/en/10_WEIXIN_CONNECTOR_GUIDE.md), [QQ](docs/en/03_QQ_CONNECTOR_GUIDE.md), Telegram, Discord, Slack, Feishu, WhatsApp, and [Lingzhu / Rokid](docs/en/04_LINGZHU_CONNECTOR_GUIDE.md)
+- conference-to-journal extension workflows, and rebuttal workflows from paper, code, and reviewer comments
+- one quest, one Git repository
+- branches and worktrees as native research structure
+- live Studio and Canvas from durable quest state
+- reusable baselines, not one-off benchmark runs
+- durable `bash_exec` sessions, not disposable terminal output
 
-If you want to install the bundled CLI tree into another base path from a source checkout:
+DeepScientist works best when the task is computational, verifiable, and worth tracking across multiple rounds.
 
-```bash
-bash install.sh --dir /data/DeepScientist
-```
+## News
 
-If you already have a populated DeepScientist home and want to move it safely:
+- `2026/03/24`: DeepScientist officially releases `v1.5`.
+- `2026/02/01`: the DeepScientist paper is available on [OpenReview](https://openreview.net/forum?id=cZFgsLq8Gs) for `ICLR 2026`.
 
-```bash
-ds migrate /data/DeepScientist
-```
+## Getting Started
 
-`ds migrate` stops the managed daemon first, shows the absolute source and target paths, asks for a double confirmation, verifies the copied tree, updates launcher wrappers, and only then removes the old path.
+- [Docs Index (English)](docs/en/README.md)
+- [Quick Start (English)](docs/en/00_QUICK_START.md)
+- [Guided Workflow Tour (English)](docs/en/12_GUIDED_WORKFLOW_TOUR.md)
+- [Start Research Guide (English)](docs/en/02_START_RESEARCH_GUIDE.md)
+- [Core Architecture Guide (English)](docs/en/13_CORE_ARCHITECTURE_GUIDE.md)
 
-## Troubleshooting
+## Install
 
 ```bash
-ds doctor
+npm install -g @researai/deepscientist
+codex --login
+ds --yolo --here
 ```
 
-`ds docker` is also accepted as a compatibility alias, but `ds doctor` is the documented command.
+If `codex --login` is unavailable, run `codex` once and finish authentication there. After startup, open `http://127.0.0.1:20999`.
 
-## Local PDF Compile
+For detailed install, troubleshooting, PDF compile, and other launch modes, use:
 
-```bash
-ds latex install-runtime
-```
-
-This installs a lightweight TinyTeX `pdflatex` runtime for local paper compilation.
+- [Quick Start](docs/en/00_QUICK_START.md)
+- [Doctor](docs/en/09_DOCTOR.md)
 
-## QQ Connector
+## Documentation
 
-- [Quick Start (English)](docs/en/00_QUICK_START.md)
-- [快速开始（中文）](docs/zh/00_QUICK_START.md)
+- [Docs Index (English)](docs/en/README.md)
+- [Guided Workflow Tour (English)](docs/en/12_GUIDED_WORKFLOW_TOUR.md)
+- [Core Architecture Guide (English)](docs/en/13_CORE_ARCHITECTURE_GUIDE.md)
+- [Prompt, Skills, and MCP Guide (English)](docs/en/14_PROMPT_SKILLS_AND_MCP_GUIDE.md)
+- [Weixin Connector Guide (English)](docs/en/10_WEIXIN_CONNECTOR_GUIDE.md)
 - [QQ Connector Guide (English)](docs/en/03_QQ_CONNECTOR_GUIDE.md)
-- [QQ Connector Guide (中文)](docs/zh/03_QQ_CONNECTOR_GUIDE.md)
+- [Lingzhu / Rokid Guide (English)](docs/en/04_LINGZHU_CONNECTOR_GUIDE.md)
 - [Memory and MCP Guide (English)](docs/en/07_MEMORY_AND_MCP.md)
-- [Memory 与 MCP 指南（中文）](docs/zh/07_MEMORY_AND_MCP.md)
+- [Settings Reference (English)](docs/en/01_SETTINGS_REFERENCE.md)
 
 ## Maintainers
 
@@ -136,9 +120,7 @@ This installs a lightweight TinyTeX `pdflatex` runtime for local paper compilati
 
 ## Citation
 
-This project is currently contributed by Yixuan Weng, Shichen Li, Weixu Zhao, Minjun Zhu. If you find our work valuable, please cite:
-
-本项目当前由 Yixuan Weng、Shichen Li、Weixu Zhao、Minjun Zhu 共同贡献。如果你觉得我们的工作有价值，请引用：
+This project is currently contributed by Yixuan Weng, Shichen Li, Weixu Zhao, Qiyao Sun, Zhen Lin, Minjun Zhu. If you find our work valuable, please cite:
 
 ```bibtex
 @inproceedings{
@@ -151,6 +133,37 @@ url={https://openreview.net/forum?id=cZFgsLq8Gs}
 }
 ```
 
+## End-to-End Autonomous Research Systems
+
+| System | System Type | E2E | Research Map | Workshop | Keeps Growing | Channels | Figure & Rebuttal & Review |
+|---|---|---|---|---|---|---|---|
+| [autoresearch](https://github.com/karpathy/autoresearch) | Open-source |  |  | ✓ |  |  |  |
+| [RD-Agent](https://github.com/microsoft/RD-Agent) | Open-source |  |  |  | ✓ |  |  |
+| [Agent Laboratory](https://github.com/SamuelSchmidgall/AgentLaboratory) | Open-source | ✓ |  | ✓ | ✓ |  |  |
+| [AI-Scientist](https://github.com/SakanaAI/AI-Scientist) | Open-source | ✓ |  |  |  |  |  |
+| [AI-Scientist-v2](https://github.com/SakanaAI/AI-Scientist-v2) | Open-source | ✓ |  |  |  |  |  |
+| [AutoResearchClaw](https://github.com/aiming-lab/AutoResearchClaw) | Open-source | ✓ |  |  | ✓ | ✓ |  |
+| [ClawPhD](https://github.com/ZhihaoAIRobotic/ClawPhD) | Open-source |  |  | ✓ |  | ✓ |  |
+| [Dr. Claw](https://github.com/OpenLAIR/dr-claw) | Open-source | ✓ |  | ✓ |  | ✓ |  |
+| [FARS](https://analemma.ai/fars/) | Closed-source | ✓ |  |  |  |  |  |
+| [EvoScientist](https://github.com/EvoScientist/EvoScientist) | Open-source | ✓ |  | ✓ | ✓ | ✓ |  |
+| [PaperClaw](https://github.com/meowscles69/PaperClaw) | Open-source |  |  |  |  |  | ✓ |
+| [ScienceClaw](https://github.com/beita6969/ScienceClaw) | Open-source |  |  |  | ✓ | ✓ |  |
+| [claude-scholar](https://github.com/Galaxy-Dawn/claude-scholar) | Open-source | ✓ |  | ✓ | ✓ |  |  |
+| [Research-Claw](https://github.com/wentorai/Research-Claw) | Open-source | ✓ |  | ✓ | ✓ | ✓ |  |
+| [DeepScientist](https://github.com/ResearAI/DeepScientist) | Open-source | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
+
+## More From ResearAI
+
+DeepReviewer and AutoFigure projects worth exploring alongside DeepScientist:
+
+| Project | What it does |
+|---|---|
+| [AutoFigure](https://github.com/ResearAI/AutoFigure) | generate paper-ready figures |
+| [AutoFigure-Edit](https://github.com/ResearAI/AutoFigure-Edit) | editable vector paper figures |
+| [DeepReviewer-v2](https://github.com/ResearAI/DeepReviewer-v2) | review papers and drafts |
+| [Awesome-AI-Scientist](https://github.com/ResearAI/Awesome-AI-Scientist) | curated AI scientist landscape |
+
 ## License
 
 [Apache License 2.0](LICENSE)

package/bin/ds.js

@@ -564,6 +564,12 @@ function colorize(code, text) {
   return `${code}${text}\u001B[0m`;
 }
 
+const OFFICIAL_REPOSITORY_URL = 'https://github.com/ResearAI/DeepScientist';
+
+function officialRepositoryLine() {
+  return `Official open-source repository: ${hyperlink(OFFICIAL_REPOSITORY_URL, OFFICIAL_REPOSITORY_URL)}`;
+}
+
 function renderBrandArtwork() {
   const brandPath = path.join(repoRoot, 'assets', 'branding', 'deepscientist-mark.png');
   const chafa = resolveExecutableOnPath('chafa');
@@ -668,7 +674,10 @@ function printLaunchCard({
   const width = Math.max(72, Math.min(process.stdout.columns || 100, 108));
   const divider = colorize('\u001B[38;5;245m', '─'.repeat(Math.max(36, width - 6)));
   const title = colorize('\u001B[1;38;5;39m', 'ResearAI');
-  const subtitle = colorize('\u001B[38;5;110m', 'Local-first research operating system');
+  const subtitleLines = [
+    colorize('\u001B[38;5;110m', 'DeepScientist is not just a fully open-source autonomous scientific discovery system.'),
+    colorize('\u001B[38;5;110m', 'It is also a research map that keeps growing from every round.'),
+  ];
   const versionLine = colorize('\u001B[38;5;245m', `Version ${packageJson.version}`);
   const urlLabel = colorize('\u001B[1;38;5;45m', hyperlink(url, url));
   const workspaceMode =
@@ -711,7 +720,9 @@ function printLaunchCard({
   for (const line of wordmark) {
     console.log(centerText(colorize('\u001B[1;38;5;39m', line), width));
   }
-  console.log(centerText(subtitle, width));
+  for (const line of subtitleLines) {
+    console.log(centerText(line, width));
+  }
   console.log('');
   console.log(centerText(divider, width));
   console.log(centerText(colorize('\u001B[1m', workspaceMode), width));
@@ -721,6 +732,7 @@ function printLaunchCard({
   console.log(centerText(nextStep, width));
   console.log(centerText('Run ds --stop to stop the managed daemon.', width));
   console.log(centerText('Need to move this installation later? Use ds migrate /new/path.', width));
+  console.log(centerText(officialRepositoryLine(), width));
   console.log('');
   renderLaunchHints({ home, url, bindUrl, pythonSelection, yolo });
 }
@@ -802,8 +814,8 @@ function writeCodexPreflightReport(home, probe) {
     <main class="page">
       <section class="panel">
         <h1>DeepScientist could not start Codex</h1>
-        <p class="meta">DeepScientist blocked startup because the Codex hello probe did not pass. Please run <code>codex</code>, complete login, then launch <code>ds</code> again.</p>
-        <p class="meta">DeepScientist 启动前进行了 Codex 可用性检查，但 hello 探测没有通过。请先手动运行 <code>codex</code> 并完成登录，再重新启动 <code>ds</code>。</p>
+        <p class="meta">DeepScientist blocked startup because the Codex hello probe did not pass. In most installs, <code>npm install -g @researai/deepscientist</code> also installs the bundled Codex dependency. If <code>codex</code> is still missing, repair it with <code>npm install -g @openai/codex</code>. Then run <code>codex --login</code> (or <code>codex</code>), finish authentication, run <code>ds doctor</code>, and launch <code>ds</code> again.</p>
+        <p class="meta">DeepScientist 启动前进行了 Codex 可用性检查，但 hello 探测没有通过。正常情况下，<code>npm install -g @researai/deepscientist</code> 也会一并安装 bundled Codex 依赖；如果此后 <code>codex</code> 仍不可用，请再执行 <code>npm install -g @openai/codex</code> 修复。然后运行 <code>codex --login</code>（或 <code>codex</code>）完成认证，再执行 <code>ds doctor</code>，最后重新启动 <code>ds</code>。</p>
 
         <h2>Summary</h2>
         <p>${escapeHtml(probe?.summary || 'Codex startup probe failed.')}</p>
@@ -1002,6 +1014,8 @@ Flags:
   --force-check      Ignore the cached version probe
   --remind-later     Defer prompts for the current published version
   --skip-version     Skip reminders for the current published version
+
+Without \`--yes\`, \`ds update\` will ask for a \`Y/N\` confirmation on interactive terminals.
 `);
 }
 
@@ -2769,6 +2783,33 @@ function printUpdateStatus(status, { compact = false } = {}) {
   }
 }
 
+function parseYesNoAnswer(answer, defaultValue = false) {
+  const normalized = String(answer || '').trim().toLowerCase();
+  if (!normalized) {
+    return defaultValue;
+  }
+  if (normalized === 'y' || normalized === 'yes') {
+    return true;
+  }
+  if (normalized === 'n' || normalized === 'no') {
+    return false;
+  }
+  return defaultValue;
+}
+
+async function promptYesNo(question, { defaultValue = false } = {}) {
+  if (!process.stdin.isTTY || !process.stdout.isTTY) {
+    return defaultValue;
+  }
+  return new Promise((resolve) => {
+    const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+    rl.question(question, (answer) => {
+      rl.close();
+      resolve(parseYesNoAnswer(answer, defaultValue));
+    });
+  });
+}
+
 function spawnDetachedNode(args, options = {}) {
   const out = options.logPath ? fs.openSync(options.logPath, 'a') : 'ignore';
   const child = spawn(process.execPath, args, {
@@ -2965,6 +3006,50 @@ async function performSelfUpdate(home, options = {}) {
   };
 }
 
+function normalizeLauncherRelaunchArgs(rawArgs, home) {
+  const normalized = [];
+  for (let index = 0; index < rawArgs.length; index += 1) {
+    const arg = rawArgs[index];
+    if (arg === '--home') {
+      index += 1;
+      continue;
+    }
+    if (arg === '--here' || arg === '--skip-update-check') {
+      continue;
+    }
+    normalized.push(arg);
+  }
+  return ['--home', home, ...normalized, '--skip-update-check'];
+}
+
+function relaunchLauncherAfterUpdate(rawArgs, home) {
+  const launcherPath = resolveLauncherPath();
+  if (!launcherPath) {
+    return {
+      ok: false,
+      exitCode: 1,
+      message: 'DeepScientist was updated, but the new launcher path could not be resolved for relaunch.',
+    };
+  }
+  const result = spawnSync(process.execPath, [launcherPath, ...normalizeLauncherRelaunchArgs(rawArgs, home)], {
+    cwd: repoRoot,
+    stdio: 'inherit',
+    env: process.env,
+  });
+  if (result.error) {
+    return {
+      ok: false,
+      exitCode: 1,
+      message: result.error.message,
+    };
+  }
+  return {
+    ok: true,
+    exitCode: result.status ?? 0,
+    message: null,
+  };
+}
+
 async function maybeHandleStartupUpdate(home, rawArgs, options = {}) {
   if (options.skipUpdateCheck || process.env.DS_SKIP_UPDATE_PROMPT === '1') {
     return false;
@@ -2978,8 +3063,43 @@ async function maybeHandleStartupUpdate(home, rawArgs, options = {}) {
   }
 
   printUpdateStatus(status, { compact: true });
-  markUpdateDeferred(home, status.latest_version);
-  return false;
+  if (!status.can_self_update || !process.stdin.isTTY || !process.stdout.isTTY) {
+    markUpdateDeferred(home, status.latest_version);
+    return false;
+  }
+
+  const confirmed = await promptYesNo(`Install DeepScientist ${status.latest_version} now? [y/N]: `, {
+    defaultValue: false,
+  });
+  if (!confirmed) {
+    markUpdateDeferred(home, status.latest_version);
+    console.log(`DeepScientist will remind you later about ${status.latest_version || 'the next release'}.`);
+    return false;
+  }
+
+  console.log('Updating DeepScientist now...');
+  const payload = await performSelfUpdate(home, {
+    host: options.host,
+    port: options.port,
+    restartDaemon: false,
+  });
+  console.log(payload.message);
+  if (payload.log_path) {
+    console.log(`Update log: ${payload.log_path}`);
+  }
+  if (!payload.ok) {
+    console.log('DeepScientist will continue launching with the current session.');
+    return false;
+  }
+
+  console.log('Relaunching DeepScientist...');
+  const relaunch = relaunchLauncherAfterUpdate(rawArgs, home);
+  if (!relaunch.ok) {
+    console.error(relaunch.message);
+    process.exit(relaunch.exitCode || 1);
+  }
+  process.exit(relaunch.exitCode || 0);
+  return true;
 }
 
 async function startBackgroundUpdateWorker(home, options = {}) {
@@ -3244,14 +3364,27 @@ function handleCodexPreflightFailure(error) {
   if (!error || error.code !== 'DS_CODEX_PREFLIGHT') {
     return false;
   }
+  const errorLabel = colorize('\u001B[1;38;5;196m', 'ERROR');
+  const warningLabel = colorize('\u001B[1;38;5;214m', 'WARNING');
   console.error('');
-  console.error('DeepScientist could not start because Codex is not ready yet.');
+  console.error(`${errorLabel} DeepScientist could not start because Codex is not ready yet.`);
   console.error(`Report: ${error.reportPath}`);
   if (Array.isArray(error.probe?.errors)) {
     for (const item of error.probe.errors) {
-      console.error(`  - ${item}`);
+      console.error(`${errorLabel} ${item}`);
+    }
+  }
+  if (Array.isArray(error.probe?.warnings)) {
+    for (const item of error.probe.warnings) {
+      console.error(`${warningLabel} ${item}`);
     }
   }
+  console.error(`${warningLabel} Recommended fix:`);
+  console.error(`${warningLabel} 1. In most installs, \`npm install -g @researai/deepscientist\` also installs the bundled Codex dependency.`);
+  console.error(`${warningLabel} 2. If \`codex\` is still missing, run \`npm install -g @openai/codex\`.`);
+  console.error(`${warningLabel} 3. Run \`codex --login\` (or \`codex\`) and finish authentication.`);
+  console.error(`${warningLabel} 4. Run \`ds doctor\` and confirm the Codex check passes.`);
+  console.error(`${warningLabel} 5. Run \`ds\` again.`);
   openBrowser(error.reportUrl);
   process.exit(1);
   return true;
@@ -3375,7 +3508,29 @@ async function updateMain(rawArgs) {
     process.exit(0);
   }
   printUpdateStatus(status, { compact: true });
-  process.exit(0);
+  if (!status.can_self_update) {
+    process.exit(0);
+  }
+
+  const confirmed = await promptYesNo(`Install DeepScientist ${status.latest_version} now? [y/N]: `, {
+    defaultValue: false,
+  });
+  if (!confirmed) {
+    const payload = markUpdateDeferred(home, status.latest_version);
+    console.log(`DeepScientist will remind you later about ${payload.latest_version || 'the next release'}.`);
+    process.exit(0);
+  }
+
+  const payload = await performSelfUpdate(home, {
+    host: options.host,
+    port: options.port,
+    restartDaemon: options.restartDaemon,
+  });
+  console.log(payload.message);
+  if (payload.log_path) {
+    console.log(`Update log: ${payload.log_path}`);
+  }
+  process.exit(payload.ok ? 0 : 1);
 }
 
 async function migrateMain(rawArgs) {
@@ -3680,6 +3835,10 @@ module.exports = {
     detectInstallMode,
     updateManualCommand,
     buildUpdateStatus,
+    parseYesNoAnswer,
+    normalizeLauncherRelaunchArgs,
+    officialRepositoryLine,
+    stripAnsi,
   },
 };