@researai/deepscientist 1.5.7 → 1.5.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (156) hide show
  1. package/LICENSE +186 -21
  2. package/README.md +8 -4
  3. package/bin/ds.js +224 -9
  4. package/docs/en/00_QUICK_START.md +2 -2
  5. package/docs/en/07_MEMORY_AND_MCP.md +40 -3
  6. package/docs/en/99_ACKNOWLEDGEMENTS.md +1 -0
  7. package/docs/zh/00_QUICK_START.md +2 -2
  8. package/docs/zh/07_MEMORY_AND_MCP.md +40 -3
  9. package/docs/zh/99_ACKNOWLEDGEMENTS.md +1 -0
  10. package/install.sh +34 -0
  11. package/package.json +2 -2
  12. package/pyproject.toml +2 -2
  13. package/src/deepscientist/__init__.py +1 -1
  14. package/src/deepscientist/acp/envelope.py +1 -0
  15. package/src/deepscientist/artifact/metrics.py +814 -83
  16. package/src/deepscientist/artifact/schemas.py +1 -0
  17. package/src/deepscientist/artifact/service.py +2001 -229
  18. package/src/deepscientist/bash_exec/monitor.py +1 -1
  19. package/src/deepscientist/bash_exec/service.py +17 -9
  20. package/src/deepscientist/channels/qq.py +17 -0
  21. package/src/deepscientist/channels/relay.py +16 -0
  22. package/src/deepscientist/config/models.py +6 -0
  23. package/src/deepscientist/config/service.py +70 -2
  24. package/src/deepscientist/daemon/api/handlers.py +414 -14
  25. package/src/deepscientist/daemon/api/router.py +4 -0
  26. package/src/deepscientist/daemon/app.py +292 -21
  27. package/src/deepscientist/gitops/diff.py +6 -10
  28. package/src/deepscientist/mcp/server.py +191 -40
  29. package/src/deepscientist/prompts/builder.py +65 -19
  30. package/src/deepscientist/quest/node_traces.py +129 -2
  31. package/src/deepscientist/quest/service.py +140 -34
  32. package/src/deepscientist/quest/stage_views.py +175 -33
  33. package/src/deepscientist/registries/baseline.py +56 -4
  34. package/src/deepscientist/runners/codex.py +1 -1
  35. package/src/prompts/connectors/qq.md +1 -1
  36. package/src/prompts/contracts/shared_interaction.md +14 -0
  37. package/src/prompts/system.md +113 -32
  38. package/src/skills/analysis-campaign/SKILL.md +10 -14
  39. package/src/skills/baseline/SKILL.md +51 -38
  40. package/src/skills/baseline/references/baseline-plan-template.md +2 -0
  41. package/src/skills/decision/SKILL.md +12 -8
  42. package/src/skills/experiment/SKILL.md +28 -16
  43. package/src/skills/experiment/references/main-experiment-plan-template.md +2 -0
  44. package/src/skills/figure-polish/SKILL.md +1 -0
  45. package/src/skills/finalize/SKILL.md +3 -8
  46. package/src/skills/idea/SKILL.md +18 -8
  47. package/src/skills/idea/references/literature-survey-template.md +24 -0
  48. package/src/skills/idea/references/related-work-playbook.md +4 -0
  49. package/src/skills/idea/references/selection-gate.md +9 -0
  50. package/src/skills/intake-audit/SKILL.md +2 -8
  51. package/src/skills/rebuttal/SKILL.md +2 -8
  52. package/src/skills/review/SKILL.md +2 -8
  53. package/src/skills/scout/SKILL.md +2 -8
  54. package/src/skills/write/SKILL.md +53 -17
  55. package/src/skills/write/templates/DEEPSCIENTIST_NOTES.md +21 -0
  56. package/src/skills/write/templates/README.md +408 -0
  57. package/src/skills/write/templates/UPSTREAM_LICENSE.txt +21 -0
  58. package/src/skills/write/templates/aaai2026/README.md +534 -0
  59. package/src/skills/write/templates/aaai2026/aaai2026-unified-supp.tex +144 -0
  60. package/src/skills/write/templates/aaai2026/aaai2026-unified-template.tex +952 -0
  61. package/src/skills/write/templates/aaai2026/aaai2026.bib +111 -0
  62. package/src/skills/write/templates/aaai2026/aaai2026.bst +1493 -0
  63. package/src/skills/write/templates/aaai2026/aaai2026.sty +315 -0
  64. package/src/skills/write/templates/acl/README.md +50 -0
  65. package/src/skills/write/templates/acl/acl.sty +312 -0
  66. package/src/skills/write/templates/acl/acl_latex.tex +377 -0
  67. package/src/skills/write/templates/acl/acl_lualatex.tex +101 -0
  68. package/src/skills/write/templates/acl/acl_natbib.bst +1940 -0
  69. package/src/skills/write/templates/acl/anthology.bib.txt +26 -0
  70. package/src/skills/write/templates/acl/custom.bib +70 -0
  71. package/src/skills/write/templates/acl/formatting.md +326 -0
  72. package/src/skills/write/templates/asplos2027/main.tex +459 -0
  73. package/src/skills/write/templates/asplos2027/references.bib +135 -0
  74. package/src/skills/write/templates/colm2025/README.md +3 -0
  75. package/src/skills/write/templates/colm2025/colm2025_conference.bib +11 -0
  76. package/src/skills/write/templates/colm2025/colm2025_conference.bst +1440 -0
  77. package/src/skills/write/templates/colm2025/colm2025_conference.sty +218 -0
  78. package/src/skills/write/templates/colm2025/colm2025_conference.tex +305 -0
  79. package/src/skills/write/templates/colm2025/fancyhdr.sty +485 -0
  80. package/src/skills/write/templates/colm2025/math_commands.tex +508 -0
  81. package/src/skills/write/templates/colm2025/natbib.sty +1246 -0
  82. package/src/skills/write/templates/iclr2026/fancyhdr.sty +485 -0
  83. package/src/skills/write/templates/iclr2026/iclr2026_conference.bib +24 -0
  84. package/src/skills/write/templates/iclr2026/iclr2026_conference.bst +1440 -0
  85. package/src/skills/write/templates/iclr2026/iclr2026_conference.sty +246 -0
  86. package/src/skills/write/templates/iclr2026/iclr2026_conference.tex +414 -0
  87. package/src/skills/write/templates/iclr2026/math_commands.tex +508 -0
  88. package/src/skills/write/templates/iclr2026/natbib.sty +1246 -0
  89. package/src/skills/write/templates/icml2026/algorithm.sty +79 -0
  90. package/src/skills/write/templates/icml2026/algorithmic.sty +201 -0
  91. package/src/skills/write/templates/icml2026/example_paper.bib +75 -0
  92. package/src/skills/write/templates/icml2026/example_paper.tex +662 -0
  93. package/src/skills/write/templates/icml2026/fancyhdr.sty +864 -0
  94. package/src/skills/write/templates/icml2026/icml2026.bst +1443 -0
  95. package/src/skills/write/templates/icml2026/icml2026.sty +767 -0
  96. package/src/skills/write/templates/neurips2025/Makefile +36 -0
  97. package/src/skills/write/templates/neurips2025/extra_pkgs.tex +53 -0
  98. package/src/skills/write/templates/neurips2025/main.tex +38 -0
  99. package/src/skills/write/templates/neurips2025/neurips.sty +382 -0
  100. package/src/skills/write/templates/nsdi2027/main.tex +426 -0
  101. package/src/skills/write/templates/nsdi2027/references.bib +151 -0
  102. package/src/skills/write/templates/nsdi2027/usenix-2020-09.sty +83 -0
  103. package/src/skills/write/templates/osdi2026/main.tex +429 -0
  104. package/src/skills/write/templates/osdi2026/references.bib +150 -0
  105. package/src/skills/write/templates/osdi2026/usenix-2020-09.sty +83 -0
  106. package/src/skills/write/templates/sosp2026/main.tex +532 -0
  107. package/src/skills/write/templates/sosp2026/references.bib +148 -0
  108. package/src/tui/package.json +1 -1
  109. package/src/ui/dist/assets/{AiManusChatView-BS3V4ZOk.js → AiManusChatView-BKZ103sn.js} +110 -14
  110. package/src/ui/dist/assets/{AnalysisPlugin-DLPXQsmr.js → AnalysisPlugin-mTTzGAlK.js} +1 -1
  111. package/src/ui/dist/assets/{AutoFigurePlugin-C-Fr9knQ.js → AutoFigurePlugin-C_wWw4AP.js} +5 -5
  112. package/src/ui/dist/assets/{CliPlugin-Dd8AHzFg.js → CliPlugin-BH58n3GY.js} +9 -9
  113. package/src/ui/dist/assets/{CodeEditorPlugin-Dg-RepTl.js → CodeEditorPlugin-BKGRUH7e.js} +8 -8
  114. package/src/ui/dist/assets/{CodeViewerPlugin-D2J_3nyt.js → CodeViewerPlugin-BMADwFWJ.js} +5 -5
  115. package/src/ui/dist/assets/{DocViewerPlugin-ChRLLKNb.js → DocViewerPlugin-ZOnTIHLN.js} +3 -3
  116. package/src/ui/dist/assets/{GitDiffViewerPlugin-DgHfcved.js → GitDiffViewerPlugin-CQ7h1Djm.js} +830 -86
  117. package/src/ui/dist/assets/{ImageViewerPlugin-C89GZMBy.js → ImageViewerPlugin-GVS5MsnC.js} +5 -5
  118. package/src/ui/dist/assets/{LabCopilotPanel-BUfIwUcb.js → LabCopilotPanel-BZNv1JML.js} +10 -10
  119. package/src/ui/dist/assets/{LabPlugin-zvUmQUMq.js → LabPlugin-TWcJsdQA.js} +1 -1
  120. package/src/ui/dist/assets/{LatexPlugin-C1SSNuWp.js → LatexPlugin-DIjHiR2x.js} +7 -7
  121. package/src/ui/dist/assets/{MarkdownViewerPlugin-D2Mf5tU5.js → MarkdownViewerPlugin-D3ooGAH0.js} +4 -4
  122. package/src/ui/dist/assets/{MarketplacePlugin-CF4LgiS2.js → MarketplacePlugin-DfVfE9hN.js} +3 -3
  123. package/src/ui/dist/assets/{NotebookEditor-BM7Bgwlv.js → NotebookEditor-DDl0_Mc0.js} +1 -1
  124. package/src/ui/dist/assets/{index-Be0NAmh8.js → NotebookEditor-s8JhzuX1.js} +12 -155
  125. package/src/ui/dist/assets/{PdfLoader-Bc5qfD-Z.js → PdfLoader-C2Sf6SJM.js} +1 -1
  126. package/src/ui/dist/assets/{PdfMarkdownPlugin-sh1-IRcp.js → PdfMarkdownPlugin-CXFLoIsa.js} +3 -3
  127. package/src/ui/dist/assets/{PdfViewerPlugin-C_a7CpWG.js → PdfViewerPlugin-BYTmz2fK.js} +10 -10
  128. package/src/ui/dist/assets/{SearchPlugin-L4z3HcLf.js → SearchPlugin-CjWBI1O9.js} +1 -1
  129. package/src/ui/dist/assets/{Stepper-Dk4aQ3fN.js → Stepper-B0Dd8CxK.js} +1 -1
  130. package/src/ui/dist/assets/{TextViewerPlugin-BsNtlKVo.js → TextViewerPlugin-DdOBU3-S.js} +4 -4
  131. package/src/ui/dist/assets/{VNCViewer-BpeDcZ5_.js → VNCViewer-B8HGgLwQ.js} +9 -9
  132. package/src/ui/dist/assets/{bibtex-C4QI-bbj.js → bibtex-CKaefIN2.js} +1 -1
  133. package/src/ui/dist/assets/{code-DuMINRsg.js → code-BWAY76JP.js} +1 -1
  134. package/src/ui/dist/assets/{file-content-C3N-432K.js → file-content-C1NwU5oQ.js} +1 -1
  135. package/src/ui/dist/assets/{file-diff-panel-CffQ4ZMg.js → file-diff-panel-CywslwB9.js} +1 -1
  136. package/src/ui/dist/assets/{file-socket-CRH59PCO.js → file-socket-B4kzuOBQ.js} +1 -1
  137. package/src/ui/dist/assets/{file-utils-vYGtW2mI.js → file-utils-H2fjA46S.js} +1 -1
  138. package/src/ui/dist/assets/{image-DBVGaooo.js → image-D-NZM-6P.js} +1 -1
  139. package/src/ui/dist/assets/{index-B1P6hQRJ.js → index-7Chr1g9c.js} +3734 -1862
  140. package/src/ui/dist/assets/{index-DjSFDmgB.js → index-BdM1Gqfr.js} +2 -2
  141. package/src/ui/dist/assets/{index-BpjYH9Vg.js → index-CDxNdQdz.js} +1 -1
  142. package/src/ui/dist/assets/{index-Do9N28uB.css → index-DGIYDuTv.css} +163 -34
  143. package/src/ui/dist/assets/index-DHZJ_0TI.js +159 -0
  144. package/src/ui/dist/assets/{message-square-BsPDBhiY.js → message-square-BzjLiXir.js} +1 -1
  145. package/src/ui/dist/assets/{monaco-BTkdPojV.js → monaco-Cb2uKKe6.js} +1 -1
  146. package/src/ui/dist/assets/{popover-cWjCk-vc.js → popover-Bg72DGgT.js} +1 -1
  147. package/src/ui/dist/assets/{project-sync-CXn530xb.js → project-sync-Ce_0BglY.js} +1 -1
  148. package/src/ui/dist/assets/{sigma-04Jr12jg.js → sigma-DPaACDrh.js} +1 -1
  149. package/src/ui/dist/assets/{tooltip-BdVDl0G5.js → tooltip-C_mA6R0w.js} +1 -1
  150. package/src/ui/dist/assets/{trash-CB_GlQyC.js → trash-BvTgE5__.js} +1 -1
  151. package/src/ui/dist/assets/{useCliAccess-BL932NwS.js → useCliAccess-CgPeMOwP.js} +1 -1
  152. package/src/ui/dist/assets/{useFileDiffOverlay-B2WK7Tvq.js → useFileDiffOverlay-xPhz7P5B.js} +1 -1
  153. package/src/ui/dist/assets/{wrap-text-YC68g12z.js → wrap-text-C3Un3YQr.js} +1 -1
  154. package/src/ui/dist/assets/{zoom-out-C0RJvFiJ.js → zoom-out-BgxLa0Ri.js} +1 -1
  155. package/src/ui/dist/index.html +5 -2
  156. /package/src/ui/dist/assets/{index-CccQYZjX.css → NotebookEditor-CccQYZjX.css} +0 -0
package/src/ui/dist/assets/{index-DjSFDmgB.js → index-BdM1Gqfr.js} RENAMED
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- import { r as reactExports, G as ConnectionState, j as jsxRuntimeExports, H as EnhancedTerminal } from './index-B1P6hQRJ.js';
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- import { u as useCliAccess, a as useCliSocket, n as nextSeq, b as buildChatSessionId } from './useCliAccess-BL932NwS.js';
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+ import { r as reactExports, G as ConnectionState, j as jsxRuntimeExports, H as EnhancedTerminal } from './index-7Chr1g9c.js';
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+ import { u as useCliAccess, a as useCliSocket, n as nextSeq, b as buildChatSessionId } from './useCliAccess-CgPeMOwP.js';
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  function CliToolTerminal({
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  projectId,
package/src/ui/dist/assets/{index-BpjYH9Vg.js → index-CDxNdQdz.js} RENAMED
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- import { z as createLucideIcon } from './index-B1P6hQRJ.js';
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+ import { z as createLucideIcon } from './index-7Chr1g9c.js';
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  /**
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  * @license lucide-react v0.511.0 - ISC