@researai/deepscientist 1.5.7 → 1.5.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (148) hide show
  1. package/README.md +4 -0
  2. package/bin/ds.js +220 -5
  3. package/docs/en/07_MEMORY_AND_MCP.md +40 -3
  4. package/docs/en/99_ACKNOWLEDGEMENTS.md +1 -0
  5. package/docs/zh/07_MEMORY_AND_MCP.md +40 -3
  6. package/docs/zh/99_ACKNOWLEDGEMENTS.md +1 -0
  7. package/install.sh +34 -0
  8. package/package.json +1 -1
  9. package/pyproject.toml +1 -1
  10. package/src/deepscientist/__init__.py +1 -1
  11. package/src/deepscientist/acp/envelope.py +1 -0
  12. package/src/deepscientist/artifact/metrics.py +813 -80
  13. package/src/deepscientist/artifact/schemas.py +1 -0
  14. package/src/deepscientist/artifact/service.py +1101 -99
  15. package/src/deepscientist/bash_exec/monitor.py +1 -1
  16. package/src/deepscientist/bash_exec/service.py +17 -9
  17. package/src/deepscientist/channels/qq.py +17 -0
  18. package/src/deepscientist/channels/relay.py +16 -0
  19. package/src/deepscientist/config/models.py +6 -0
  20. package/src/deepscientist/config/service.py +70 -2
  21. package/src/deepscientist/daemon/api/handlers.py +284 -14
  22. package/src/deepscientist/daemon/api/router.py +1 -0
  23. package/src/deepscientist/daemon/app.py +291 -20
  24. package/src/deepscientist/gitops/diff.py +6 -10
  25. package/src/deepscientist/mcp/server.py +188 -39
  26. package/src/deepscientist/prompts/builder.py +51 -18
  27. package/src/deepscientist/quest/service.py +83 -34
  28. package/src/deepscientist/quest/stage_views.py +74 -29
  29. package/src/deepscientist/runners/codex.py +1 -1
  30. package/src/prompts/connectors/qq.md +1 -1
  31. package/src/prompts/contracts/shared_interaction.md +14 -0
  32. package/src/prompts/system.md +106 -32
  33. package/src/skills/analysis-campaign/SKILL.md +10 -14
  34. package/src/skills/baseline/SKILL.md +51 -38
  35. package/src/skills/baseline/references/baseline-plan-template.md +2 -0
  36. package/src/skills/decision/SKILL.md +12 -8
  37. package/src/skills/experiment/SKILL.md +28 -16
  38. package/src/skills/experiment/references/main-experiment-plan-template.md +2 -0
  39. package/src/skills/figure-polish/SKILL.md +1 -0
  40. package/src/skills/finalize/SKILL.md +3 -8
  41. package/src/skills/idea/SKILL.md +2 -8
  42. package/src/skills/intake-audit/SKILL.md +2 -8
  43. package/src/skills/rebuttal/SKILL.md +2 -8
  44. package/src/skills/review/SKILL.md +2 -8
  45. package/src/skills/scout/SKILL.md +2 -8
  46. package/src/skills/write/SKILL.md +52 -16
  47. package/src/skills/write/templates/DEEPSCIENTIST_NOTES.md +21 -0
  48. package/src/skills/write/templates/README.md +408 -0
  49. package/src/skills/write/templates/UPSTREAM_LICENSE.txt +21 -0
  50. package/src/skills/write/templates/aaai2026/README.md +534 -0
  51. package/src/skills/write/templates/aaai2026/aaai2026-unified-supp.tex +144 -0
  52. package/src/skills/write/templates/aaai2026/aaai2026-unified-template.tex +952 -0
  53. package/src/skills/write/templates/aaai2026/aaai2026.bib +111 -0
  54. package/src/skills/write/templates/aaai2026/aaai2026.bst +1493 -0
  55. package/src/skills/write/templates/aaai2026/aaai2026.sty +315 -0
  56. package/src/skills/write/templates/acl/README.md +50 -0
  57. package/src/skills/write/templates/acl/acl.sty +312 -0
  58. package/src/skills/write/templates/acl/acl_latex.tex +377 -0
  59. package/src/skills/write/templates/acl/acl_lualatex.tex +101 -0
  60. package/src/skills/write/templates/acl/acl_natbib.bst +1940 -0
  61. package/src/skills/write/templates/acl/anthology.bib.txt +26 -0
  62. package/src/skills/write/templates/acl/custom.bib +70 -0
  63. package/src/skills/write/templates/acl/formatting.md +326 -0
  64. package/src/skills/write/templates/asplos2027/main.tex +459 -0
  65. package/src/skills/write/templates/asplos2027/references.bib +135 -0
  66. package/src/skills/write/templates/colm2025/README.md +3 -0
  67. package/src/skills/write/templates/colm2025/colm2025_conference.bib +11 -0
  68. package/src/skills/write/templates/colm2025/colm2025_conference.bst +1440 -0
  69. package/src/skills/write/templates/colm2025/colm2025_conference.sty +218 -0
  70. package/src/skills/write/templates/colm2025/colm2025_conference.tex +305 -0
  71. package/src/skills/write/templates/colm2025/fancyhdr.sty +485 -0
  72. package/src/skills/write/templates/colm2025/math_commands.tex +508 -0
  73. package/src/skills/write/templates/colm2025/natbib.sty +1246 -0
  74. package/src/skills/write/templates/iclr2026/fancyhdr.sty +485 -0
  75. package/src/skills/write/templates/iclr2026/iclr2026_conference.bib +24 -0
  76. package/src/skills/write/templates/iclr2026/iclr2026_conference.bst +1440 -0
  77. package/src/skills/write/templates/iclr2026/iclr2026_conference.sty +246 -0
  78. package/src/skills/write/templates/iclr2026/iclr2026_conference.tex +414 -0
  79. package/src/skills/write/templates/iclr2026/math_commands.tex +508 -0
  80. package/src/skills/write/templates/iclr2026/natbib.sty +1246 -0
  81. package/src/skills/write/templates/icml2026/algorithm.sty +79 -0
  82. package/src/skills/write/templates/icml2026/algorithmic.sty +201 -0
  83. package/src/skills/write/templates/icml2026/example_paper.bib +75 -0
  84. package/src/skills/write/templates/icml2026/example_paper.tex +662 -0
  85. package/src/skills/write/templates/icml2026/fancyhdr.sty +864 -0
  86. package/src/skills/write/templates/icml2026/icml2026.bst +1443 -0
  87. package/src/skills/write/templates/icml2026/icml2026.sty +767 -0
  88. package/src/skills/write/templates/neurips2025/Makefile +36 -0
  89. package/src/skills/write/templates/neurips2025/extra_pkgs.tex +53 -0
  90. package/src/skills/write/templates/neurips2025/main.tex +38 -0
  91. package/src/skills/write/templates/neurips2025/neurips.sty +382 -0
  92. package/src/skills/write/templates/nsdi2027/main.tex +426 -0
  93. package/src/skills/write/templates/nsdi2027/references.bib +151 -0
  94. package/src/skills/write/templates/nsdi2027/usenix-2020-09.sty +83 -0
  95. package/src/skills/write/templates/osdi2026/main.tex +429 -0
  96. package/src/skills/write/templates/osdi2026/references.bib +150 -0
  97. package/src/skills/write/templates/osdi2026/usenix-2020-09.sty +83 -0
  98. package/src/skills/write/templates/sosp2026/main.tex +532 -0
  99. package/src/skills/write/templates/sosp2026/references.bib +148 -0
  100. package/src/tui/package.json +1 -1
  101. package/src/ui/dist/assets/{AiManusChatView-BS3V4ZOk.js → AiManusChatView-m2FNtwbn.js} +110 -14
  102. package/src/ui/dist/assets/{AnalysisPlugin-DLPXQsmr.js → AnalysisPlugin-BMTF8EGL.js} +1 -1
  103. package/src/ui/dist/assets/{AutoFigurePlugin-C-Fr9knQ.js → AutoFigurePlugin-DxPdMUNb.js} +5 -5
  104. package/src/ui/dist/assets/{CliPlugin-Dd8AHzFg.js → CliPlugin-BEOWgxCI.js} +9 -9
  105. package/src/ui/dist/assets/{CodeEditorPlugin-Dg-RepTl.js → CodeEditorPlugin-BCXvjqmb.js} +8 -8
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  108. package/src/ui/dist/assets/{GitDiffViewerPlugin-DgHfcved.js → GitDiffViewerPlugin-Cksf3VZ-.js} +830 -86
  109. package/src/ui/dist/assets/{ImageViewerPlugin-C89GZMBy.js → ImageViewerPlugin-CFz-OsTS.js} +5 -5
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  115. package/src/ui/dist/assets/{index-Be0NAmh8.js → NotebookEditor-CSJYx7b-.js} +12 -155
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  130. package/src/ui/dist/assets/{image-DBVGaooo.js → image-BZkGJ4mM.js} +1 -1
  131. package/src/ui/dist/assets/{index-DjSFDmgB.js → index-CxkvSeKw.js} +2 -2
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  133. package/src/ui/dist/assets/{index-Do9N28uB.css → index-DXZ1daiJ.css} +163 -34
  134. package/src/ui/dist/assets/index-DdRW6RMJ.js +159 -0
  135. package/src/ui/dist/assets/{index-B1P6hQRJ.js → index-DjggJovS.js} +3029 -1780
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  143. package/src/ui/dist/assets/{useCliAccess-BL932NwS.js → useCliAccess-b8L6JuZm.js} +1 -1
  144. package/src/ui/dist/assets/{useFileDiffOverlay-B2WK7Tvq.js → useFileDiffOverlay-BY7uA9hV.js} +1 -1
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  146. package/src/ui/dist/assets/{zoom-out-C0RJvFiJ.js → zoom-out-RDpLugQP.js} +1 -1
  147. package/src/ui/dist/index.html +5 -2
  148. /package/src/ui/dist/assets/{index-CccQYZjX.css → NotebookEditor-CccQYZjX.css} +0 -0
package/src/deepscientist/artifact/schemas.py CHANGED
@@ -18,6 +18,7 @@ DECISION_ACTIONS = {
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  "launch_analysis_campaign",
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  "branch",
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  "prepare_branch",
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+ "activate_branch",
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  "reuse_baseline",
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  "attach_baseline",
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  "publish_baseline",