@reposkein/mcp 0.6.1 → 0.8.0

package/dist/store/decisions.js

@@ -92,10 +92,31 @@ export function takenDecisionIds(repoPath) {
     }
     return taken;
 }
-/** SHA-256 over the immutable body. Excludes status/superseded_by (lifecycle)
- *  and anchor hash values (re-stamped by reaffirm) — but covers WHICH nodes
- *  and paths the decision governs, and every prose field. */
+/** SHA-256 over the immutable body, `"v2:"`-prefixed. Excludes lifecycle
+ *  (status/superseded_by), audit metadata (reanchored_at/anchor_history) and —
+ *  since v2 — the anchors entirely: anchors are machine-managed pointers,
+ *  re-stamped by reaffirm and repaired by reanchor, so binding them into the
+ *  body made every mechanical repair look like an edit. Covers prose, paths,
+ *  supersedes and attribution. */
 export function computeBodyHash(rec) {
+    const body = {
+        alternatives: rec.alternatives ?? "",
+        consequences: rec.consequences ?? "",
+        context: rec.context,
+        decided_at: rec.decided_at,
+        decided_by: rec.decided_by,
+        decision: rec.decision,
+        paths: rec.paths,
+        supersedes: rec.supersedes,
+        title: rec.title,
+        trigger: rec.trigger.kind,
+    };
+    return "v2:" + createHash("sha256").update(JSON.stringify(body)).digest("hex");
+}
+/** The pre-v2 hash (included anchor_node_ids, bare hex). Verification only:
+ *  records signed before the v2 scheme verify against this until their next
+ *  write re-signs them. */
+export function computeBodyHashV1(rec) {
     const body = {
         alternatives: rec.alternatives ?? "",
         anchor_node_ids: rec.anchors.map((a) => a.node_id),
@@ -111,6 +132,12 @@ export function computeBodyHash(rec) {
     };
     return createHash("sha256").update(JSON.stringify(body)).digest("hex");
 }
+/** True when body_hash matches the record under whichever scheme signed it. */
+export function verifyBodyHash(rec) {
+    return rec.body_hash.startsWith("v2:")
+        ? rec.body_hash === computeBodyHash(rec)
+        : rec.body_hash === computeBodyHashV1(rec);
+}
 /** File name for a decision id (`adr:` prefix stripped). */
 export function decisionFileName(id) {
     return `${id.replace(/^adr:/, "")}.json`;
@@ -150,19 +177,14 @@ export function writeDecision(repoPath, rec) {
     writeFileSync(tmp, canonicalizeDecision(rec));
     renameSync(tmp, file);
 }
-function parseDecision(obj) {
-    if (typeof obj.id !== "string" || !obj.id.startsWith("adr:"))
-        return null;
-    if (typeof obj.title !== "string" || typeof obj.context !== "string")
-        return null;
-    if (typeof obj.decision !== "string" || typeof obj.decided_at !== "string")
-        return null;
-    const status = obj.status;
-    if (typeof status !== "string" || !STATUSES.includes(status))
-        return null;
-    const anchorsRaw = Array.isArray(obj.anchors) ? obj.anchors : [];
+/** Parses an anchors array tolerantly: a malformed entry (not an object, or
+ *  missing node_id) is dropped, never fatal — shared by `anchors` and each
+ *  `anchor_history` entry. */
+function parseAnchorArray(v) {
     const anchors = [];
-    for (const a of anchorsRaw) {
+    if (!Array.isArray(v))
+        return anchors;
+    for (const a of v) {
         if (a === null || typeof a !== "object")
             continue;
         const o = a;
@@ -176,6 +198,25 @@ function parseDecision(obj) {
             hash: typeof o.hash === "string" ? o.hash : null,
         });
     }
+    return anchors;
+}
+function parseDecision(obj) {
+    if (typeof obj.id !== "string" || !obj.id.startsWith("adr:"))
+        return null;
+    // The id is path-derived (decisionFileName/writeDecision join it under
+    // decisions dir) — reject a remainder with a separator or a `..` segment
+    // so no writer can ever be made to escape that directory.
+    const idRest = obj.id.slice("adr:".length);
+    if (/[/\\]/.test(idRest) || idRest.split(/[/\\]/).includes(".."))
+        return null;
+    if (typeof obj.title !== "string" || typeof obj.context !== "string")
+        return null;
+    if (typeof obj.decision !== "string" || typeof obj.decided_at !== "string")
+        return null;
+    const status = obj.status;
+    if (typeof status !== "string" || !STATUSES.includes(status))
+        return null;
+    const anchors = parseAnchorArray(obj.anchors);
     const strArray = (v) => Array.isArray(v) ? v.filter((x) => typeof x === "string") : [];
     const triggerKind = obj.trigger !== null &&
         typeof obj.trigger === "object" &&
@@ -206,6 +247,21 @@ function parseDecision(obj) {
         rec.alternatives = obj.alternatives;
     if (typeof obj.superseded_by === "string")
         rec.superseded_by = obj.superseded_by;
+    if (typeof obj.reanchored_at === "string")
+        rec.reanchored_at = obj.reanchored_at;
+    if (Array.isArray(obj.anchor_history)) {
+        const history = [];
+        for (const h of obj.anchor_history) {
+            if (h === null || typeof h !== "object")
+                continue;
+            const ho = h;
+            if (typeof ho.reanchored_at !== "string" || !Array.isArray(ho.anchors))
+                continue;
+            history.push({ reanchored_at: ho.reanchored_at, anchors: parseAnchorArray(ho.anchors) });
+        }
+        if (history.length > 0)
+            rec.anchor_history = history;
+    }
     return rec;
 }
 /** Raw per-file scan (no dedupe) — the substrate for loadDecisions and for

package/dist/store/decisions.js.map

@@ -1 +1 @@
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package/dist/store/instrumentTool.d.ts

@@ -36,5 +36,13 @@ export interface ToolLogger {
  *     (default `setImmediate`), which runs only after the response has
  *     already been handed back to the MCP transport. The deferred callback
  *     swallows every error itself — it must never surface as an unhandled
- *     exception/rejection. */
+ *     exception/rejection.
+ *
+ *  A third constraint added by the REP-35 tracked-graph warning below:
+ *  `session.takeTrackedGraphWarning()` can itself shell out to git on the
+ *  FIRST call for a repo, so it must (a) reuse `cachedResolve()` rather than
+ *  calling `session.resolve()` a second time (preserves fix 1), and (b) run
+ *  strictly AFTER `ts` is captured, so its cost is never attributed to the
+ *  call's logged timestamp (preserves fix 2's "ts is call-completion time,
+ *  not deferred-write time" contract). */
 export declare function createToolLogger(session: RepoSession, sessionLogger: SessionLogger, schedule?: (fn: () => void) => void): ToolLogger;

package/dist/store/instrumentTool.js

@@ -20,7 +20,15 @@ import { argsShapeOf, extractTouchedIds, resultByteSize } from "./sessionLog.js"
  *     (default `setImmediate`), which runs only after the response has
  *     already been handed back to the MCP transport. The deferred callback
  *     swallows every error itself — it must never surface as an unhandled
- *     exception/rejection. */
+ *     exception/rejection.
+ *
+ *  A third constraint added by the REP-35 tracked-graph warning below:
+ *  `session.takeTrackedGraphWarning()` can itself shell out to git on the
+ *  FIRST call for a repo, so it must (a) reuse `cachedResolve()` rather than
+ *  calling `session.resolve()` a second time (preserves fix 1), and (b) run
+ *  strictly AFTER `ts` is captured, so its cost is never attributed to the
+ *  call's logged timestamp (preserves fix 2's "ts is call-completion time,
+ *  not deferred-write time" contract). */
 export function createToolLogger(session, sessionLogger, schedule = setImmediate) {
     const als = new AsyncLocalStorage();
     function cachedResolve() {
@@ -53,8 +61,31 @@ export function createToolLogger(session, sessionLogger, schedule = setImmediate
         return (args) => als.run({}, async () => {
             let result;
             let threw = false;
+            // Captured right when `cb` finishes — see (3) below; the `finally`
+            // block reuses it rather than re-stamping after the warning-append
+            // work runs.
+            let ts;
             try {
                 result = await cb(args);
+                ts = new Date().toISOString();
+                try {
+                    // REP-35: surface the tracked-graph hazard on the FIRST successful
+                    // tool call that resolves to an affected repo — once per repo per
+                    // session, appended as an extra content item so no handler needs
+                    // to know about it. Reuses `cachedResolve()` (not
+                    // `session.resolve()` directly) so this never costs a second,
+                    // unmemoized resolution for the same call — see (1) above.
+                    if (result?.isError !== true) {
+                        const warning = session.takeTrackedGraphWarning(cachedResolve().repoPath);
+                        const content = result?.content;
+                        if (warning && Array.isArray(content)) {
+                            content.push({ type: "text", text: JSON.stringify({ warning }) });
+                        }
+                    }
+                }
+                catch {
+                    // the warning must never break a tool call
+                }
                 return result;
             }
             catch (err) {
@@ -68,7 +99,7 @@ export function createToolLogger(session, sessionLogger, schedule = setImmediate
                 try {
                     const resolution = cachedResolve();
                     if (resolution.repoPath) {
-                        deferredLog(new Date().toISOString(), resolution.repoPath, name, argsShapeOf(args), !threw && result?.isError !== true, result);
+                        deferredLog(ts ?? new Date().toISOString(), resolution.repoPath, name, argsShapeOf(args), !threw && result?.isError !== true, result);
                     }
                 }
                 catch {

package/dist/store/instrumentTool.js.map

@@ -1 +1 @@
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package/dist/store/reanchor.d.ts

@@ -0,0 +1,33 @@
+import type { GraphStore } from "./GraphStore.js";
+import { type DecisionAnchor, type DecisionRecord } from "./decisions.js";
+/** Anchor repair for `adr reanchor` / `reanchor_decision` (REP-24).
+ *
+ *  Reanchor is MECHANICAL pointer repair, distinct from reaffirm's semantic
+ *  judgment: it rebinds an anchor only on a confident match — the id resolves
+ *  under a live repo_id (suffix retry), or the recorded content hash matches
+ *  exactly one live node — and preserves staleness (a suffix rebind keeps the
+ *  recorded hash, so a stale flag survives the repair; clearing it is
+ *  reaffirm_decision's job). Ambiguous and orphaned anchors are reported,
+ *  never guessed. plan is pure; apply writes only when something rebinds, so
+ *  a second run on the same graph is a byte-level no-op. */
+export type ReanchorAction = "keep" | "rebind" | "stale" | "orphaned" | "ambiguous";
+export interface AnchorPlanEntry {
+    anchor: DecisionAnchor;
+    action: ReanchorAction;
+    /** Present iff action === "rebind". */
+    to?: DecisionAnchor;
+    /** Content-hash match count when ambiguous. */
+    candidates?: number;
+}
+export interface ReanchorPlan {
+    decision_id: string;
+    anchors: AnchorPlanEntry[];
+    changed: boolean;
+    unresolved: number;
+}
+export declare function planReanchor(store: GraphStore, repoIds: string[], rec: DecisionRecord): Promise<ReanchorPlan>;
+/** Applies a plan's rebinds. Returns the written record, or null when the
+ *  plan changes nothing (in which case NOTHING is written — idempotence is
+ *  the determinism gate). Body prose is never touched; the v2 body hash is
+ *  anchor-independent, so re-signing here only upgrades pre-v2 records. */
+export declare function applyReanchor(repoPath: string, rec: DecisionRecord, plan: ReanchorPlan, reanchoredAt: string): DecisionRecord | null;

package/dist/store/reanchor.js

@@ -0,0 +1,85 @@
+import { computeBodyHash, nodeIdSuffix, writeDecision, } from "./decisions.js";
+function liveAnchor(live, fallbackKind, hash) {
+    return {
+        node_id: live.id,
+        path: live.file_path,
+        name: live.qualified_name || live.name,
+        kind: live.labels[0] ?? fallbackKind,
+        hash,
+    };
+}
+export async function planReanchor(store, repoIds, rec) {
+    const anchors = [];
+    for (const anchor of rec.anchors) {
+        let live = await store.getNode(repoIds, anchor.node_id);
+        if (!live) {
+            const suffix = nodeIdSuffix(anchor.node_id);
+            if (suffix) {
+                for (const repoId of repoIds) {
+                    const candidate = `rs1:${repoId}${suffix}`;
+                    if (candidate === anchor.node_id)
+                        continue;
+                    live = await store.getNode(repoIds, candidate);
+                    if (live)
+                        break;
+                }
+            }
+        }
+        if (live) {
+            if (live.id !== anchor.node_id) {
+                // Suffix repair: rebind the pointer, keep the recorded hash so a
+                // stale flag survives (reaffirm clears it, not reanchor).
+                anchors.push({ anchor, action: "rebind", to: liveAnchor(live, anchor.kind, anchor.hash) });
+            }
+            else if (anchor.hash !== null && live.content_hash !== null && anchor.hash !== live.content_hash) {
+                anchors.push({ anchor, action: "stale" });
+            }
+            else {
+                anchors.push({ anchor, action: "keep" });
+            }
+            continue;
+        }
+        if (anchor.hash && store.findByContentHash) {
+            const matches = await store.findByContentHash(repoIds, anchor.hash);
+            if (matches.length === 1) {
+                anchors.push({ anchor, action: "rebind", to: liveAnchor(matches[0], anchor.kind, anchor.hash) });
+                continue;
+            }
+            if (matches.length > 1) {
+                anchors.push({ anchor, action: "ambiguous", candidates: matches.length });
+                continue;
+            }
+        }
+        anchors.push({ anchor, action: "orphaned" });
+    }
+    return {
+        decision_id: rec.id,
+        anchors,
+        changed: anchors.some((a) => a.action === "rebind"),
+        unresolved: anchors.filter((a) => a.action === "orphaned" || a.action === "ambiguous").length,
+    };
+}
+/** Applies a plan's rebinds. Returns the written record, or null when the
+ *  plan changes nothing (in which case NOTHING is written — idempotence is
+ *  the determinism gate). Body prose is never touched; the v2 body hash is
+ *  anchor-independent, so re-signing here only upgrades pre-v2 records. */
+export function applyReanchor(repoPath, rec, plan, reanchoredAt) {
+    if (!plan.changed)
+        return null;
+    const anchors = plan.anchors.map((a) => (a.action === "rebind" ? a.to : a.anchor));
+    const history = [
+        ...(rec.anchor_history ?? []),
+        { reanchored_at: reanchoredAt, anchors: rec.anchors },
+    ];
+    const updated = {
+        ...rec,
+        anchors,
+        reanchored_at: reanchoredAt,
+        anchor_history: history,
+        body_hash: "",
+    };
+    updated.body_hash = computeBodyHash(updated);
+    writeDecision(repoPath, updated);
+    return updated;
+}
+//# sourceMappingURL=reanchor.js.map

package/dist/store/reanchor.js.map

@@ -0,0 +1 @@
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package/dist/store/repoSession.d.ts

@@ -10,6 +10,9 @@ export interface RepoInfo {
     /** Cheap line counts (not full parses) — omitted where the file is absent. */
     nodes?: number;
     edges?: number;
+    /** True when git still TRACKS the derived graph here (pre-0.2.7 adopter —
+     *  REP-35). Omitted when clean, so existing consumers see no change. */
+    graph_tracked?: boolean;
 }
 export declare function describeRepo(path: string): RepoInfo;
 /** Every repo `list_repos` should report. Deliberately broader than
@@ -37,12 +40,28 @@ export declare class RepoSession {
     private readonly cwd;
     private readonly envRepoPath;
     private selectedPath;
+    /** Repo paths whose tracked-graph state this session has already probed —
+     *  warned or clean, either way we never probe (or repeat) again. */
+    private readonly graphWarned;
     constructor(opts: {
         cwd: string;
         envRepoPath: string | undefined;
     });
     /** Current resolution, honoring an active `select_repo` pick first. */
     resolve(): RepoResolution;
+    /** One-shot, once per repo per session: the tracked-graph warning for the
+     *  currently resolved repo, or undefined (clean repo, no repo, or already
+     *  taken). The instrumentation layer (instrumentTool.ts) appends it to the
+     *  first successful tool result — repeating it every call would spend the
+     *  context this feature exists to protect (REP-35).
+     *
+     *  `resolvedPath` is an optional override: `instrumentTool.ts` already
+     *  computes the call's resolution once via its ALS-memoized
+     *  `cachedResolve()` (see its "single resolution per call" invariant) and
+     *  passes that in, so this never triggers a second, unmemoized
+     *  `resolve()` walk for the same tool call. Omit it (as a standalone
+     *  caller would) to resolve directly. */
+    takeTrackedGraphWarning(resolvedPath?: string): string | undefined;
     /** Every candidate repo for this session — see `discoverRepoPaths`. Each
      *  entry is flagged `selected` for whichever one `resolve()` currently
      *  returns, so an agent can see the effect of a prior `select_repo` call. */

package/dist/store/repoSession.js

@@ -1,6 +1,7 @@
 import { existsSync, readFileSync } from "node:fs";
 import { basename, join } from "node:path";
 import { resolveRepoPath, walkUp, walkDown } from "./resolveRepoPath.js";
+import { trackedGraphFiles, trackedGraphWarning } from "./trackedGraph.js";
 function countLines(text) {
     let n = 0;
     for (const line of text.split("\n"))
@@ -41,11 +42,13 @@ function cheapCounts(path) {
 }
 export function describeRepo(path) {
     const repo_id = readMetaRepoId(path);
+    const tracked = trackedGraphFiles(path).length > 0;
     return {
         path,
         ...(repo_id ? { repo_id } : {}),
         name: repo_id ?? basename(path),
         ...cheapCounts(path),
+        ...(tracked ? { graph_tracked: true } : {}),
     };
 }
 /** Every repo `list_repos` should report. Deliberately broader than
@@ -77,6 +80,9 @@ export class RepoSession {
     cwd;
     envRepoPath;
     selectedPath;
+    /** Repo paths whose tracked-graph state this session has already probed —
+     *  warned or clean, either way we never probe (or repeat) again. */
+    graphWarned = new Set();
     constructor(opts) {
         this.cwd = opts.cwd;
         this.envRepoPath = opts.envRepoPath;
@@ -87,6 +93,25 @@ export class RepoSession {
             return { repoPath: this.selectedPath, source: "explicit" };
         return resolveRepoPath({ cwd: this.cwd, envRepoPath: this.envRepoPath });
     }
+    /** One-shot, once per repo per session: the tracked-graph warning for the
+     *  currently resolved repo, or undefined (clean repo, no repo, or already
+     *  taken). The instrumentation layer (instrumentTool.ts) appends it to the
+     *  first successful tool result — repeating it every call would spend the
+     *  context this feature exists to protect (REP-35).
+     *
+     *  `resolvedPath` is an optional override: `instrumentTool.ts` already
+     *  computes the call's resolution once via its ALS-memoized
+     *  `cachedResolve()` (see its "single resolution per call" invariant) and
+     *  passes that in, so this never triggers a second, unmemoized
+     *  `resolve()` walk for the same tool call. Omit it (as a standalone
+     *  caller would) to resolve directly. */
+    takeTrackedGraphWarning(resolvedPath) {
+        const path = resolvedPath ?? this.resolve().repoPath;
+        if (!path || this.graphWarned.has(path))
+            return undefined;
+        this.graphWarned.add(path);
+        return trackedGraphWarning(path);
+    }
     /** Every candidate repo for this session — see `discoverRepoPaths`. Each
      *  entry is flagged `selected` for whichever one `resolve()` currently
      *  returns, so an agent can see the effect of a prior `select_repo` call. */

package/dist/store/repoSession.js.map

@@ -1 +1 @@
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+{"version":3,"file":"repoSession.js","sourceRoot":"","sources":["../../src/store/repoSession.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACnD,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC3C,OAAO,EAAE,eAAe,EAAE,MAAM,EAAE,QAAQ,EAAuB,MAAM,sBAAsB,CAAC;AAC9F,OAAO,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AAkB3E,SAAS,UAAU,CAAC,IAAY;IAC9B,IAAI,CAAC,GAAG,CAAC,CAAC;IACV,KAAK,MAAM,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC;QAAE,IAAI,IAAI,CAAC,IAAI,EAAE;YAAE,CAAC,EAAE,CAAC;IAC1D,OAAO,CAAC,CAAC;AACX,CAAC;AAED,SAAS,cAAc,CAAC,IAAY;IAClC,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,IAAI,EAAE,YAAY,EAAE,WAAW,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC;QACrF,OAAO,OAAO,IAAI,CAAC,OAAO,KAAK,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS,CAAC;IACrE,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,SAAS,CAAC;IACnB,CAAC;AACH,CAAC;AAED;+EAC+E;AAC/E,SAAS,WAAW,CAAC,IAAY;IAC/B,MAAM,GAAG,GAAuC,EAAE,CAAC;IACnD,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,EAAE,YAAY,EAAE,aAAa,CAAC,CAAC;IAC1D,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,EAAE,YAAY,EAAE,aAAa,CAAC,CAAC;IAC1D,IAAI,CAAC;QACH,IAAI,UAAU,CAAC,SAAS,CAAC;YAAE,GAAG,CAAC,KAAK,GAAG,UAAU,CAAC,YAAY,CAAC,SAAS,EAAE,MAAM,CAAC,CAAC,CAAC;IACrF,CAAC;IAAC,MAAM,CAAC;QACP,iEAAiE;IACnE,CAAC;IACD,IAAI,CAAC;QACH,IAAI,UAAU,CAAC,SAAS,CAAC;YAAE,GAAG,CAAC,KAAK,GAAG,UAAU,CAAC,YAAY,CAAC,SAAS,EAAE,MAAM,CAAC,CAAC,CAAC;IACrF,CAAC;IAAC,MAAM,CAAC;QACP,uBAAuB;IACzB,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,IAAY;IACvC,MAAM,OAAO,GAAG,cAAc,CAAC,IAAI,CAAC,CAAC;IACrC,MAAM,OAAO,GAAG,iBAAiB,CAAC,IAAI,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;IACnD,OAAO;QACL,IAAI;QACJ,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QAC/B,IAAI,EAAE,OAAO,IAAI,QAAQ,CAAC,IAAI,CAAC;QAC/B,GAAG,WAAW,CAAC,IAAI,CAAC;QACpB,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;KAC5C,CAAC;AACJ,CAAC;AAED;;;;;;;;wEAQwE;AACxE,MAAM,UAAU,iBAAiB,CAAC,IAA2C;IAC3E,MAAM,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAC5B,MAAM,QAAQ,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAChD,IAAI,IAAI,CAAC,WAAW,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC;QAC7D,OAAO,CAAC,GAAG,QAAQ,EAAE,IAAI,CAAC,WAAW,CAAC,CAAC,IAAI,EAAE,CAAC;IAChD,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED;;;;;;;sEAOsE;AACtE,MAAM,OAAO,WAAW;IACL,GAAG,CAAS;IACZ,WAAW,CAAqB;IACzC,YAAY,CAAqB;IACzC;wEACoE;IACnD,WAAW,GAAG,IAAI,GAAG,EAAU,CAAC;IAEjD,YAAY,IAAsD;QAChE,IAAI,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC;QACpB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,WAAW,CAAC;IACtC,CAAC;IAED,uEAAuE;IACvE,OAAO;QACL,IAAI,IAAI,CAAC,YAAY;YAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,CAAC,YAAY,EAAE,MAAM,EAAE,UAAU,EAAE,CAAC;QAClF,OAAO,eAAe,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,GAAG,EAAE,WAAW,EAAE,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC;IAC3E,CAAC;IAED;;;;;;;;;;;6CAWyC;IACzC,uBAAuB,CAAC,YAAqB;QAC3C,MAAM,IAAI,GAAG,YAAY,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC;QACrD,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,OAAO,SAAS,CAAC;QAC1D,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAC3B,OAAO,mBAAmB,CAAC,IAAI,CAAC,CAAC;IACnC,CAAC;IAED;;iFAE6E;IAC7E,IAAI;QACF,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC;QACvC,OAAO,iBAAiB,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,GAAG,EAAE,WAAW,EAAE,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;YACxF,GAAG,YAAY,CAAC,IAAI,CAAC;YACrB,QAAQ,EAAE,IAAI,KAAK,MAAM;SAC1B,CAAC,CAAC,CAAC;IACN,CAAC;IAED;;;0CAGsC;IACtC,MAAM,CAAC,UAAkB;QACvB,MAAM,UAAU,GAAG,iBAAiB,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,GAAG,EAAE,WAAW,EAAE,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;QACzG,MAAM,GAAG,GACP,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,UAAU,CAAC;YAC7C,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,UAAU,CAAC;YAChD,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,UAAU,CAAC,CAAC;QAChD,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAO;gBACL,EAAE,EAAE,KAAK;gBACT,KAAK,EACH,qBAAqB,UAAU,mCAAmC;oBAClE,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC;wBACpB,CAAC,CAAC,KAAK,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG;wBAClD,CAAC,CAAC,gBAAgB,CAAC;oBACrB,qEAAqE;aACxE,CAAC;QACJ,CAAC;QACD,IAAI,CAAC,YAAY,GAAG,GAAG,CAAC,IAAI,CAAC;QAC7B,OAAO,EAAE,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC;IACjC,CAAC;CACF"}

package/dist/store/trackedGraph.d.ts

@@ -0,0 +1,14 @@
+/** The derived graph files that must never be tracked (repo-relative). */
+export declare const GRAPH_FILES: readonly [".reposkein/nodes.jsonl", ".reposkein/edges.jsonl"];
+/** Repo-relative paths of the derived graph files git currently TRACKS at
+ *  `repoPath` — `[]` when untracked, or when there is no git repo at all.
+ *  Pre-0.2.7 adopters committed these; a tracked pair reached 7.2MB (~1.9×
+ *  a 1M-token context window) in the wild, so every surface that can steer
+ *  an agent (doctor, migrate, the MCP session warning) keys off this one
+ *  probe. */
+export declare function trackedGraphFiles(repoPath: string): string[];
+/** Agent-facing warning for a repo whose derived graph is tracked, or
+ *  undefined when it isn't. One string, reused verbatim by doctor's detail,
+ *  the MCP once-per-session warning, and `list_repos` — the copy names both
+ *  the permanent fix and the interim escape hatch. */
+export declare function trackedGraphWarning(repoPath: string): string | undefined;

package/dist/store/trackedGraph.js

@@ -0,0 +1,39 @@
+import { execFileSync } from "node:child_process";
+/** The derived graph files that must never be tracked (repo-relative). */
+export const GRAPH_FILES = [".reposkein/nodes.jsonl", ".reposkein/edges.jsonl"];
+/** Repo-relative paths of the derived graph files git currently TRACKS at
+ *  `repoPath` — `[]` when untracked, or when there is no git repo at all.
+ *  Pre-0.2.7 adopters committed these; a tracked pair reached 7.2MB (~1.9×
+ *  a 1M-token context window) in the wild, so every surface that can steer
+ *  an agent (doctor, migrate, the MCP session warning) keys off this one
+ *  probe. */
+export function trackedGraphFiles(repoPath) {
+    try {
+        const out = execFileSync("git", ["-C", repoPath, "ls-files", "--", ...GRAPH_FILES], {
+            encoding: "utf8",
+            stdio: ["ignore", "pipe", "ignore"],
+        });
+        return out
+            .split("\n")
+            .map((l) => l.trim())
+            .filter(Boolean);
+    }
+    catch {
+        return []; // no git / not a work tree → nothing can be tracked
+    }
+}
+/** Agent-facing warning for a repo whose derived graph is tracked, or
+ *  undefined when it isn't. One string, reused verbatim by doctor's detail,
+ *  the MCP once-per-session warning, and `list_repos` — the copy names both
+ *  the permanent fix and the interim escape hatch. */
+export function trackedGraphWarning(repoPath) {
+    const tracked = trackedGraphFiles(repoPath);
+    if (tracked.length === 0)
+        return undefined;
+    return (`⚠ ${tracked.join(" + ")} are TRACKED in git at ${repoPath}. A bare \`git diff\`, ` +
+        "`git show`, `git status -v`, or `gh pr diff` there can pull megabytes of machine-" +
+        "generated JSONL into a context window and exhaust it. Permanent fix: run " +
+        `\`reposkein-mcp migrate ${repoPath}\` and commit the staged untracking. Until then, ` +
+        "always scope diffs, e.g. `git diff -- . ':(exclude).reposkein'`.");
+}
+//# sourceMappingURL=trackedGraph.js.map

package/dist/store/trackedGraph.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"trackedGraph.js","sourceRoot":"","sources":["../../src/store/trackedGraph.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAElD,0EAA0E;AAC1E,MAAM,CAAC,MAAM,WAAW,GAAG,CAAC,wBAAwB,EAAE,wBAAwB,CAAU,CAAC;AAEzF;;;;;aAKa;AACb,MAAM,UAAU,iBAAiB,CAAC,QAAgB;IAChD,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,YAAY,CAAC,KAAK,EAAE,CAAC,IAAI,EAAE,QAAQ,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,WAAW,CAAC,EAAE;YAClF,QAAQ,EAAE,MAAM;YAChB,KAAK,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,CAAC;SACpC,CAAC,CAAC;QACH,OAAO,GAAG;aACP,KAAK,CAAC,IAAI,CAAC;aACX,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;aACpB,MAAM,CAAC,OAAO,CAAC,CAAC;IACrB,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC,CAAC,oDAAoD;IACjE,CAAC;AACH,CAAC;AAED;;;sDAGsD;AACtD,MAAM,UAAU,mBAAmB,CAAC,QAAgB;IAClD,MAAM,OAAO,GAAG,iBAAiB,CAAC,QAAQ,CAAC,CAAC;IAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,SAAS,CAAC;IAC3C,OAAO,CACL,KAAK,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,0BAA0B,QAAQ,yBAAyB;QACnF,mFAAmF;QACnF,2EAA2E;QAC3E,2BAA2B,QAAQ,mDAAmD;QACtF,kEAAkE,CACnE,CAAC;AACJ,CAAC"}

package/dist/tools/reaffirmDecision.d.ts

@@ -6,6 +6,8 @@ export interface ReaffirmDecisionArgs {
 /** "This decision is still correct": re-stamps every anchor from the live
  *  graph — stale anchors get the current hash, moved anchors are rebound to
  *  their recovered node — clearing review flags without supersede spam. The
- *  prose body never changes; body_hash is re-signed because rebinding an
- *  anchor updates the governed node list it covers. */
+ *  prose body never changes, and since v2 the body_hash doesn't either:
+ *  anchors are excluded from it, so re-stamping is a no-op on the hash. The
+ *  re-sign stays because it's a lazy v1→v2 upgrade path — a pre-v2 record
+ *  re-signed here moves onto the anchor-independent scheme. */
 export declare function makeReaffirmDecision(store: GraphStore, repoId: string, repoPath: string): (args: ReaffirmDecisionArgs) => Promise<ToolResult>;

package/dist/tools/reaffirmDecision.js

@@ -3,8 +3,10 @@ const err = (text) => ({ content: [{ type: "text", text }], isError: true });
 /** "This decision is still correct": re-stamps every anchor from the live
  *  graph — stale anchors get the current hash, moved anchors are rebound to
  *  their recovered node — clearing review flags without supersede spam. The
- *  prose body never changes; body_hash is re-signed because rebinding an
- *  anchor updates the governed node list it covers. */
+ *  prose body never changes, and since v2 the body_hash doesn't either:
+ *  anchors are excluded from it, so re-stamping is a no-op on the hash. The
+ *  re-sign stays because it's a lazy v1→v2 upgrade path — a pre-v2 record
+ *  re-signed here moves onto the anchor-independent scheme. */
 export function makeReaffirmDecision(store, repoId, repoPath) {
     return async (args) => {
         try {

package/dist/tools/reaffirmDecision.js.map

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package/dist/tools/reanchorDecision.d.ts

@@ -0,0 +1,12 @@
+import type { GraphStore } from "../store/GraphStore.js";
+import type { ToolResult } from "./readCypher.js";
+export interface ReanchorDecisionArgs {
+    decision_id?: string;
+    dry_run?: boolean;
+}
+/** Mechanical anchor repair (REP-24): rebinds anchors whose node moved or
+ *  whose id churned, on confident matches only. Prose and (v2) body hash are
+ *  untouched; staleness flags survive — reaffirm_decision clears those. */
+export declare function makeReanchorDecision(store: GraphStore, repoId: string, repoPath: string, opts?: {
+    today?: () => string;
+}): (args: ReanchorDecisionArgs) => Promise<ToolResult>;