@reposkein/mcp 0.1.1 → 0.1.2

package/dist/search/bm25f.js

@@ -0,0 +1,151 @@
+/**
+ * Deterministic BM25F lexical scorer for semantic_find.
+ *
+ * Architecture (design §3):
+ *   - Tokenize by splitting on non-alphanumeric boundaries AND camelCase/PascalCase.
+ *   - ASCII-lowercase, drop length-1 tokens. No stemming/stopwords.
+ *   - Per-field weights: { qualified_name:10, name:8, summary:4, signature:2, file_path:1 }
+ *   - BM25F with k1=1.2, b=0.75, IDF computed over whole corpus.
+ *   - Deterministic: fixed iteration order, scores rounded to 6 decimal places,
+ *     ties broken by node_id ascending.
+ *   - Pure function: no clock, no random, no I/O.
+ */
+// Field weights (design §3.2)
+const WEIGHTS = {
+    qualified_name: 10,
+    name: 8,
+    summary: 4,
+    signature: 2,
+    file_path: 1,
+};
+// Field names in fixed iteration order (for deterministic FP accumulation)
+const FIELDS = ["qualified_name", "name", "summary", "signature", "file_path"];
+const K1 = 1.2;
+const B = 0.75;
+const SCORE_PRECISION = 1e6; // round to 6 decimal places
+/**
+ * Tokenize a string by:
+ * 1. Split on non-alphanumeric characters.
+ * 2. Split camelCase / PascalCase runs (lower→upper boundary, acronym+word boundary).
+ * 3. ASCII-lowercase.
+ * 4. Drop tokens of length ≤ 1.
+ */
+export function tokenize(s) {
+    // First split on non-alphanumeric boundaries (/, ., _, -, whitespace, #, (, ), <, >, :, etc.)
+    const parts = s.split(/[^a-zA-Z0-9]+/);
+    const tokens = [];
+    for (const part of parts) {
+        if (part.length === 0)
+            continue;
+        // Split camelCase/PascalCase:
+        //   - Insert split before an uppercase letter that follows a lowercase letter: e.g. getUserById → get|User|By|Id
+        //   - Insert split before an uppercase letter followed by lowercase when preceded by uppercase: e.g. HTTPServer → HTTP|Server
+        const subparts = part
+            .replace(/([a-z])([A-Z])/g, "$1\0$2")
+            .replace(/([A-Z]+)([A-Z][a-z])/g, "$1\0$2")
+            .split("\0");
+        for (const sp of subparts) {
+            const lower = sp.toLowerCase();
+            if (lower.length > 1) {
+                tokens.push(lower);
+            }
+        }
+    }
+    return tokens;
+}
+/** Build token multiset for a field value. */
+function fieldTokens(value) {
+    return tokenize(value);
+}
+/**
+ * Rank corpus nodes by BM25F for the given query, returning up to limit results.
+ * Deterministic: identical corpus + query → identical ranking.
+ */
+export function rankCorpus(corpus, query, limit) {
+    if (corpus.length === 0 || !query.trim())
+        return [];
+    // 1. Tokenize query
+    const queryTokens = tokenize(query);
+    if (queryTokens.length === 0)
+        return [];
+    const uniqueQueryTokens = [...new Set(queryTokens)];
+    // 2. Build per-node documents in id-sorted order (corpus is already sorted by store)
+    const docs = corpus.map((node) => {
+        const fields = {};
+        const fieldLengths = {};
+        for (const f of FIELDS) {
+            const value = node[f] ?? "";
+            const toks = fieldTokens(value);
+            fields[f] = toks;
+            fieldLengths[f] = toks.length;
+        }
+        return { node, fields, fieldLengths };
+    });
+    // 3. Compute average field lengths across corpus
+    const avgFieldLen = {};
+    for (const f of FIELDS) {
+        const total = docs.reduce((sum, d) => sum + d.fieldLengths[f], 0);
+        avgFieldLen[f] = docs.length > 0 ? total / docs.length : 1;
+    }
+    // 4. Build inverted index: token → set of doc indices (for IDF)
+    const dfMap = new Map();
+    for (const qt of uniqueQueryTokens) {
+        let df = 0;
+        for (const doc of docs) {
+            // Check if token appears in any field of this doc
+            let found = false;
+            for (const f of FIELDS) {
+                if (doc.fields[f].includes(qt)) {
+                    found = true;
+                    break;
+                }
+            }
+            if (found)
+                df++;
+        }
+        dfMap.set(qt, df);
+    }
+    const N = docs.length;
+    // 5. Score each document
+    const scored = [];
+    for (const doc of docs) {
+        let totalScore = 0;
+        const matchedTokens = new Set();
+        for (const qt of uniqueQueryTokens) {
+            const df = dfMap.get(qt) ?? 0;
+            if (df === 0)
+                continue;
+            // IDF: ln(1 + (N - df + 0.5) / (df + 0.5))  — always positive for df < N
+            const idf = Math.log(1 + (N - df + 0.5) / (df + 0.5));
+            // Weighted TF across fields (BM25F-style)
+            let weightedTf = 0;
+            for (const f of FIELDS) {
+                const toks = doc.fields[f];
+                const tf = toks.filter((t) => t === qt).length;
+                if (tf === 0)
+                    continue;
+                matchedTokens.add(qt);
+                const fieldLen = doc.fieldLengths[f];
+                const avgLen = avgFieldLen[f] > 0 ? avgFieldLen[f] : 1;
+                // BM25 saturation with length normalization
+                const saturated = (tf * (K1 + 1)) / (tf + K1 * (1 - B + B * (fieldLen / avgLen)));
+                weightedTf += WEIGHTS[f] * saturated;
+            }
+            totalScore += idf * weightedTf;
+        }
+        if (totalScore > 0) {
+            // Round to fixed precision to prevent cross-platform FP jitter from reordering ties
+            const roundedScore = Math.round(totalScore * SCORE_PRECISION) / SCORE_PRECISION;
+            scored.push({ node: doc.node, score: roundedScore, matched: [...matchedTokens].sort() });
+        }
+    }
+    // 6. Sort: descending score, tie-break ascending node_id
+    scored.sort((a, b) => {
+        const diff = b.score - a.score;
+        if (diff !== 0)
+            return diff;
+        return a.node.id < b.node.id ? -1 : a.node.id > b.node.id ? 1 : 0;
+    });
+    return scored.slice(0, limit);
+}
+//# sourceMappingURL=bm25f.js.map

package/dist/search/bm25f.js.map

@@ -0,0 +1 @@
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package/dist/store/GraphStore.d.ts

@@ -1,4 +1,15 @@
 import type { TargetRow } from "../profile/types.js";
+/** A node eligible for BM25F lexical search (Function/Class/Interface/Enum). */
+export interface CorpusNode {
+    id: string;
+    kind: string;
+    name: string;
+    qualified_name: string;
+    signature: string;
+    summary: string;
+    file_path: string;
+    repo_id: string;
+}
 /** Thrown by stores that cannot execute raw Cypher (e.g. the JSONL store).
  *  read_cypher surfaces the message to the agent. */
 export declare class CypherUnsupportedError extends Error {
@@ -53,6 +64,9 @@ export interface GraphStore {
     writeSummary(repoId: string, id: string, fields: SummaryFields): Promise<WriteSummaryResult>;
     /** Transitively federated repo_ids (NOT including repoId itself). */
     federatedRepoIds(repoId: string): Promise<string[]>;
+    /** Function/Class/Interface/Enum corpus nodes for all repoIds, sorted by id.
+     *  Used by the shared BM25F scorer for semantic_find. */
+    searchCorpus(repoIds: string[]): Promise<CorpusNode[]>;
     /** Raw read-only Cypher (read_cypher tool only). Stores without a Cypher
      *  engine throw CypherUnsupportedError. */
     runRead(query: string, params?: Record<string, unknown>, opts?: {

package/dist/store/GraphStore.js.map

@@ -1 +1 @@
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+{"version":3,"file":"GraphStore.js","sourceRoot":"","sources":["../../src/store/GraphStore.ts"],"names":[],"mappings":"AAcA;qDACqD;AACrD,MAAM,OAAO,sBAAuB,SAAQ,KAAK;IAC/C,YACE,OAAO,GAAG,yFAAyF;QAEnG,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,IAAI,GAAG,wBAAwB,CAAC;IACvC,CAAC;CACF"}

package/dist/store/JsonlGraphStore.d.ts

@@ -1,4 +1,4 @@
-import { type GraphStore, type NeighborRow, type SummaryFields, type WriteSummaryResult } from "./GraphStore.js";
+import { type CorpusNode, type GraphStore, type NeighborRow, type SummaryFields, type WriteSummaryResult } from "./GraphStore.js";
 import type { TargetRow } from "../profile/types.js";
 /** A GraphStore over a repo's committed .reposkein JSONL.  In single-repo mode
  *  it loads only the root; in federated mode it also loads nested children
@@ -32,6 +32,7 @@ export declare class JsonlGraphStore implements GraphStore {
     calleesAt2Hops(repoIds: string[], id: string, limit: number): Promise<NeighborRow[]>;
     writeSummary(repoId: string, id: string, fields: SummaryFields): Promise<WriteSummaryResult>;
     federatedRepoIds(repoId: string): Promise<string[]>;
+    searchCorpus(repoIds: string[]): Promise<CorpusNode[]>;
     runRead(): Promise<Record<string, unknown>[]>;
     close(): Promise<void>;
 }

package/dist/store/JsonlGraphStore.js

@@ -265,6 +265,31 @@ export class JsonlGraphStore {
         }
         return ids;
     }
+    async searchCorpus(repoIds) {
+        this.ensureFresh();
+        const CORPUS_LABELS = new Set(["Function", "Class", "Interface", "Enum"]);
+        const rows = [];
+        for (const n of this.graph.nodes) {
+            if (!repoIds.includes(n.repoId))
+                continue;
+            const kind = n.labels.find((l) => CORPUS_LABELS.has(l));
+            if (!kind)
+                continue;
+            const name = str(n.props.name) ?? "";
+            rows.push({
+                id: n.id,
+                kind,
+                name,
+                qualified_name: str(n.props.qualified_name) ?? name,
+                signature: str(n.props.signature) ?? "",
+                summary: str(n.props.semantic_summary) ?? "",
+                file_path: str(n.props.file_path) ?? "",
+                repo_id: n.repoId,
+            });
+        }
+        rows.sort((a, b) => (a.id < b.id ? -1 : a.id > b.id ? 1 : 0));
+        return rows;
+    }
     async runRead() {
         throw new CypherUnsupportedError();
     }

package/dist/store/JsonlGraphStore.js.map

@@ -1 +1 @@
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package/dist/store/Neo4jGraphStore.d.ts

@@ -1,4 +1,4 @@
-import type { GraphStore, NeighborRow, SummaryFields, WriteSummaryResult } from "./GraphStore.js";
+import type { CorpusNode, GraphStore, NeighborRow, SummaryFields, WriteSummaryResult } from "./GraphStore.js";
 import type { TargetRow } from "../profile/types.js";
 export declare class Neo4jGraphStore implements GraphStore {
     private driver;
@@ -16,6 +16,7 @@ export declare class Neo4jGraphStore implements GraphStore {
     callees(repoIds: string[], id: string, limit: number): Promise<NeighborRow[]>;
     calleesAt2Hops(repoIds: string[], id: string, limit: number): Promise<NeighborRow[]>;
     writeSummary(repoId: string, id: string, fields: SummaryFields): Promise<WriteSummaryResult>;
+    searchCorpus(repoIds: string[]): Promise<CorpusNode[]>;
     federatedRepoIds(repoId: string): Promise<string[]>;
     runRead(query: string, params?: Record<string, unknown>, opts?: {
         timeoutMs?: number;

package/dist/store/Neo4jGraphStore.js

@@ -104,6 +104,24 @@ export class Neo4jGraphStore {
             "n.summary_model=$m, n.summary_at=$at, n.summary_by=$by", { id, repo: repoId, s: fields.summary, m: fields.model, at: fields.at, by: fields.by });
         return { kind: "ok", stale_replaced };
     }
+    async searchCorpus(repoIds) {
+        const rows = await this.runRead(`MATCH (n:Rs) WHERE (n:Function OR n:Class OR n:Interface OR n:Enum) AND n.repo_id IN $repo_ids
+       RETURN n.id AS id, [l IN labels(n) WHERE l <> 'Rs' AND l IN ['Function','Class','Interface','Enum']][0] AS kind,
+              n.name AS name, n.qualified_name AS qualified_name,
+              coalesce(n.signature, '') AS signature, coalesce(n.semantic_summary, '') AS summary,
+              n.file_path AS file_path, n.repo_id AS repo_id
+       ORDER BY n.id`, { repo_ids: repoIds });
+        return rows.map((r) => ({
+            id: r.id,
+            kind: r.kind ?? "Function",
+            name: r.name ?? "",
+            qualified_name: r.qualified_name ?? r.name ?? "",
+            signature: r.signature ?? "",
+            summary: r.summary ?? "",
+            file_path: r.file_path ?? "",
+            repo_id: r.repo_id ?? "",
+        }));
+    }
     async federatedRepoIds(repoId) {
         const rows = await this.runRead("MATCH (r:Repository {repo_id: $repo_id, root_path: '.'})-[:FEDERATES_TO*1..8]->(x:Repository) " +
             "WHERE x.federated_repo_id IS NOT NULL RETURN DISTINCT x.federated_repo_id AS id", { repo_id: repoId }, { timeoutMs: 5000 });

package/dist/store/Neo4jGraphStore.js.map

@@ -1 +1 @@
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package/dist/store/UnconfiguredStore.d.ts

@@ -1,4 +1,4 @@
-import type { GraphStore, NeighborRow, SummaryFields, WriteSummaryResult } from "./GraphStore.js";
+import type { CorpusNode, GraphStore, NeighborRow, SummaryFields, WriteSummaryResult } from "./GraphStore.js";
 import type { TargetRow } from "../profile/types.js";
 /** A no-op store used when NEO4J_PASSWORD is absent.
  *  All operations reject with an instructive error. */
@@ -11,6 +11,7 @@ export declare class UnconfiguredStore implements GraphStore {
     calleesAt2Hops(): Promise<NeighborRow[]>;
     writeSummary(_repoId: string, _id: string, _fields: SummaryFields): Promise<WriteSummaryResult>;
     federatedRepoIds(): Promise<string[]>;
+    searchCorpus(_repoIds: string[]): Promise<CorpusNode[]>;
     runRead(): Promise<Record<string, unknown>[]>;
     close(): Promise<void>;
 }

package/dist/store/UnconfiguredStore.js

@@ -26,6 +26,9 @@ export class UnconfiguredStore {
     async federatedRepoIds() {
         throw new Error(MSG);
     }
+    async searchCorpus(_repoIds) {
+        return [];
+    }
     async runRead() {
         throw new Error(MSG);
     }

package/dist/store/UnconfiguredStore.js.map

@@ -1 +1 @@
-{"version":3,"file":"UnconfiguredStore.js","sourceRoot":"","sources":["../../src/store/UnconfiguredStore.ts"],"names":[],"mappings":"AAQA,MAAM,GAAG,GACP,kFAAkF,CAAC;AAErF;uDACuD;AACvD,MAAM,OAAO,iBAAiB;IAC5B,KAAK,CAAC,OAAO,CAAC,QAAkB,EAAE,GAAW;QAC3C,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,oBAAoB;QACxB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,OAAO;QACX,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,OAAO;QACX,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,cAAc;QAClB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,YAAY,CAChB,OAAe,EACf,GAAW,EACX,OAAsB;QAEtB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,gBAAgB;QACpB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,OAAO;QACX,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,KAAK;QACT,mBAAmB;IACrB,CAAC;CACF"}
+{"version":3,"file":"UnconfiguredStore.js","sourceRoot":"","sources":["../../src/store/UnconfiguredStore.ts"],"names":[],"mappings":"AASA,MAAM,GAAG,GACP,kFAAkF,CAAC;AAErF;uDACuD;AACvD,MAAM,OAAO,iBAAiB;IAC5B,KAAK,CAAC,OAAO,CAAC,QAAkB,EAAE,GAAW;QAC3C,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,oBAAoB;QACxB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,OAAO;QACX,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,OAAO;QACX,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,cAAc;QAClB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,YAAY,CAChB,OAAe,EACf,GAAW,EACX,OAAsB;QAEtB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,gBAAgB;QACpB,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,YAAY,CAAC,QAAkB;QACnC,OAAO,EAAE,CAAC;IACZ,CAAC;IACD,KAAK,CAAC,OAAO;QACX,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;IACvB,CAAC;IACD,KAAK,CAAC,KAAK;QACT,mBAAmB;IACrB,CAAC;CACF"}

package/dist/temporal/gitlog.d.ts

@@ -0,0 +1,65 @@
+/**
+ * Git-log mining: co-change, churn, and ownership signals.
+ *
+ * One `git log --no-merges --name-status -z --date=short` pass yields all three
+ * signals. Rename chains are reconstructed from R records so a file's history
+ * follows it across moves. Bulk commits (>K files) are excluded from co-change
+ * counting but still counted for churn. Min-support floor drops one-off pairs.
+ *
+ * All output ordering is by explicit sort keys — never Map iteration order.
+ */
+export interface CommitRecord {
+    sha: string;
+    date: string;
+    author_name: string;
+    author_email: string;
+    files: string[];
+}
+export interface TemporalStats {
+    head_sha: string;
+    shallow: boolean;
+    files: Record<string, {
+        change_count: number;
+        last_changed: string;
+        authors: {
+            name: string;
+            commits: number;
+        }[];
+    }>;
+    cochange: Record<string, {
+        path: string;
+        support: number;
+        confidence: number;
+    }[]>;
+}
+/**
+ * Parse output of:
+ *   git log --no-merges --name-status -z --date=short
+ *       --format='%x00%H%x1f%ad%x1f%aN%x1f%aE'
+ *
+ * The `-z` flag makes git NUL-terminate each path in the name-status block.
+ * We split on NUL to get tokens, then detect the commit header lines
+ * (which start with NUL %H %ad %aN %aE joined by FS=\x1f).
+ *
+ * Rename records arrive as e.g. `R100\toldpath\0newpath\0`.
+ * With -z, git emits: <status>\0<path1>\0 and for renames <status>\0<path1>\0<path2>\0.
+ *
+ * Actual git -z --name-status output format (tested):
+ *   \0<sha>\x1f<date>\x1f<name>\x1f<email>\n\n<status>\0<path>\0...<status>\0<old>\0<new>\0
+ * The commit separator is "\n\n" before the header NUL. We split entire output
+ * on the pattern "\x00\x00" (double NUL that appears between commits in -z mode)
+ * combined with the leading-NUL header.
+ *
+ * Strategy: split on NUL → walk tokens; whenever we see a token matching
+ * /^\x00<sha>\x1f.../ we start a new commit header; otherwise collect
+ * name-status entries.
+ */
+export declare function parseGitLog(raw: string): CommitRecord[];
+export declare function computeTemporal(commits: CommitRecord[], opts: {
+    headSha: string;
+    shallow: boolean;
+    maxFilesPerCommit?: number;
+    minSupport?: number;
+    topCoChanged?: number;
+    topAuthors?: number;
+}): TemporalStats;