@remnic/core 9.50.2 → 9.51.0

package/dist/chunk-IXXABW5A.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/storage/tombstone-blocked-capture-mutation.ts","../src/storage/tombstone-blocked-capture-sync.ts","../src/storage/tombstone-blocked-capture-index.ts"],"sourcesContent":["import { AsyncLocalStorage } from \"node:async_hooks\";\nimport { createHash } from \"node:crypto\";\nimport { mkdir } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { withHeldFileLock } from \"../utils/serialize-mutations.js\";\nimport type { MemoryFile, MemoryFrontmatter } from \"../types.js\";\nconst TOMBSTONE_CAPTURE_WRITE_LOCK_STALE_MS = 60_000;\nconst CAPTURE_WRITE_LOCK_MAX_ATTEMPTS = 3;\nconst CAPTURE_WRITE_LOCK_RETRY_BASE_MS = 25;\nconst CAPTURE_WRITE_LOCK_BUSY_MESSAGE = \"tombstone-blocked capture write lock remained busy\";\n\nexport function isTombstoneBlockedCaptureWriteLockBusy(error: unknown): boolean {\n  return error instanceof Error && error.message === CAPTURE_WRITE_LOCK_BUSY_MESSAGE;\n}\n\nexport function normalizeExplicitCaptureContent(value: string): string {\n  return value.toLowerCase().replace(/\\s+/g, \" \").trim();\n}\n\nexport function buildExplicitCaptureDedupKey(\n  content: string,\n  category: string,\n  sourceConnector: string | undefined\n): string {\n  const encode = (label: string, value: string): string => `${label} ${value.length} ${value}`;\n  return [\n    encode(\"category\", category),\n    encode(\"connector\", sourceConnector?.trim() ?? \"\"),\n    encode(\"content\", normalizeExplicitCaptureContent(content)),\n  ].join(\" \");\n}\n\nexport function buildCapturePathLockIdentity(pathname: string): string {\n  return `path ${pathname.length} ${pathname}`;\n}\n\nexport function captureIdentityHash(memory: MemoryFile): string {\n  return createHash(\"sha256\")\n    .update(\n      buildExplicitCaptureDedupKey(memory.content, memory.frontmatter.category, memory.frontmatter.sourceConnector)\n    )\n    .digest(\"hex\");\n}\n\nexport type TombstoneBlockedCaptureWriteLockOptions = {\n  readonly stateDir: string;\n  readonly withHeldFileLock?: typeof withHeldFileLock;\n};\n\nexport class TombstoneBlockedCaptureWriteLock {\n  private readonly context = new AsyncLocalStorage<ReadonlySet<string>>();\n\n  constructor(private readonly options: TombstoneBlockedCaptureWriteLockOptions) {}\n\n  private captureWriteLockPathForHash(identityHash: string): string {\n    const filename =\n      identityHash.length === 0 ? \"explicit-capture-write.lock\" : `explicit-capture-write-${identityHash}.lock`;\n    return path.join(this.options.stateDir, \"tombstone-blocked-capture\", filename);\n  }\n\n  private async withSingleCaptureWriteLock<T>(lockPath: string, task: () => Promise<T>): Promise<T> {\n    await mkdir(path.dirname(lockPath), { recursive: true });\n    const retry = Symbol(\"retry\");\n    const permanentFailure = Symbol(\"permanent-failure\");\n    const runWithHeldFileLock = this.options.withHeldFileLock ?? withHeldFileLock;\n    for (let attempt = 0; attempt < CAPTURE_WRITE_LOCK_MAX_ATTEMPTS; attempt += 1) {\n      const result = await runWithHeldFileLock<T | typeof retry | typeof permanentFailure>(\n        lockPath,\n        {\n          staleMs: TOMBSTONE_CAPTURE_WRITE_LOCK_STALE_MS,\n          maxWaitMs: 1_000,\n          pollMs: 25,\n        },\n        async (acquired, controller) => {\n          if (acquired) return await task();\n          return controller.failure === \"error\" ? permanentFailure : retry;\n        }\n      );\n      if (result === permanentFailure) {\n        throw new Error(\"tombstone-blocked capture write lock acquisition failed\");\n      }\n      if (result !== retry) return result;\n      if (attempt === CAPTURE_WRITE_LOCK_MAX_ATTEMPTS - 1) break;\n      const delayState = Promise.withResolvers<void>();\n      setTimeout(delayState.resolve, CAPTURE_WRITE_LOCK_RETRY_BASE_MS * 2 ** attempt);\n      await delayState.promise;\n    }\n    throw new Error(CAPTURE_WRITE_LOCK_BUSY_MESSAGE);\n  }\n  private async withPhysicalCaptureWriteLocks<T>(\n    task: () => Promise<T>,\n    identityHashes: readonly string[]\n  ): Promise<T> {\n    const lockPaths = [...new Set(identityHashes.map((hash) => this.captureWriteLockPathForHash(hash)))];\n    const acquire = async (index: number): Promise<T> => {\n      if (index === lockPaths.length) return await task();\n      return await this.withSingleCaptureWriteLock(lockPaths[index], () => acquire(index + 1));\n    };\n    return await acquire(0);\n  }\n\n  async withCaptureWriteLock<T>(task: () => Promise<T>, identity?: string | readonly string[]): Promise<T> {\n    const identities =\n      Array.isArray(identity) && identity.length > 0 ? identity : [typeof identity === \"string\" ? identity : \"\"];\n    return await this.withCaptureWriteLocks(task, identities, []);\n  }\n\n  async withCaptureWriteLockHashes<T>(task: () => Promise<T>, identityHashes: readonly string[]): Promise<T> {\n    return await this.withCaptureWriteLocks(task, [], identityHashes);\n  }\n\n  async withCaptureWriteLockAndHashes<T>(\n    task: () => Promise<T>,\n    identity: string | readonly string[] | undefined,\n    identityHashes: readonly string[]\n  ): Promise<T> {\n    const identities =\n      Array.isArray(identity) && identity.length > 0 ? identity : [typeof identity === \"string\" ? identity : \"\"];\n    return await this.withCaptureWriteLocks(task, identities, identityHashes);\n  }\n\n  private async withCaptureWriteLocks<T>(\n    task: () => Promise<T>,\n    identities: readonly string[],\n    identityHashes: readonly string[]\n  ): Promise<T> {\n    const current = this.context.getStore();\n    const hashToken = (key: string): string =>\n      `\\u0000${key.length === 0 ? \"\" : createHash(\"sha256\").update(key).digest(\"hex\")}`;\n    const identityHash = (key: string): string =>\n      key.length === 0 ? \"\" : createHash(\"sha256\").update(key).digest(\"hex\");\n    const identityKeys = [...new Set(identities)];\n    const hashes = [...new Set(identityHashes)];\n    const requested = [\n      ...identityKeys\n        .filter((key) => !current || (!current.has(key) && !current.has(hashToken(key))))\n        .map((key) => ({ hash: identityHash(key), pathLock: key.startsWith(\"path \") })),\n      ...hashes.filter((hash) => !current || !current.has(`\\u0000${hash}`)).map((hash) => ({ hash, pathLock: false })),\n    ]\n      .filter((entry, index, entries) => entries.findIndex((candidate) => candidate.hash === entry.hash) === index)\n      .sort(\n        (left, right) =>\n          Number(left.pathLock) - Number(right.pathLock) ||\n          this.captureWriteLockPathForHash(left.hash).localeCompare(this.captureWriteLockPathForHash(right.hash))\n      );\n    const physicalMissing = requested.map((entry) => entry.hash);\n    if (current && requested.length > 0) {\n      const held = [...current]\n        .filter((token) => token.startsWith(\"\\u0000\"))\n        .map((token) => {\n          const hash = token.slice(1);\n          const pathLock = [...current].some(\n            (key) => !key.startsWith(\"\\u0000\") && key.startsWith(\"path \") && hashToken(key) === token\n          );\n          return { hash, pathLock };\n        });\n      const requestedFirst = requested[0];\n      const heldLast = held\n        .sort(\n          (left, right) =>\n            Number(left.pathLock) - Number(right.pathLock) ||\n            this.captureWriteLockPathForHash(left.hash).localeCompare(this.captureWriteLockPathForHash(right.hash))\n        )\n        .at(-1);\n      if (\n        heldLast &&\n        requestedFirst &&\n        (Number(requestedFirst.pathLock) < Number(heldLast.pathLock) ||\n          (requestedFirst.pathLock === heldLast.pathLock &&\n            this.captureWriteLockPathForHash(requestedFirst.hash) < this.captureWriteLockPathForHash(heldLast.hash)))\n      ) {\n        throw new Error(CAPTURE_WRITE_LOCK_BUSY_MESSAGE);\n      }\n    }\n    const next = new Set(current);\n    for (const key of identityKeys) {\n      next.add(key);\n      next.add(hashToken(key));\n    }\n    for (const hash of hashes) next.add(`\\u0000${hash}`);\n    const run = () => this.context.run(next, task);\n    if (physicalMissing.length === 0) return await run();\n    return await this.withPhysicalCaptureWriteLocks(run, physicalMissing);\n  }\n}\n\nexport type TombstoneBlockedMutationHost = {\n  readCurrent: () => Promise<MemoryFile | null>;\n  isBlocked: (memory: MemoryFile | null) => boolean;\n  isQueuedReview: (memory: MemoryFile | null) => boolean;\n  memoryIdentity: (memory: MemoryFile) => string;\n  prepareWrite: () => Promise<string>;\n  commitWrite: (marker: string) => Promise<void>;\n  discardWrite: (marker: string) => Promise<void>;\n  markUntrusted: () => void;\n  writeStorageSecureFile: (pathname: string, fileContent: string) => Promise<void>;\n  withCaptureWriteLock: (task: () => Promise<void>, identity: string | readonly string[]) => Promise<void>;\n  logWarning: (message: string) => void;\n};\n\nexport type TombstoneBlockedMutation = {\n  blocked: boolean;\n  pathname: string;\n  fileContent: string;\n  identity: string | readonly string[];\n  updateIndex: (rebuildMarker?: string, current?: MemoryFile | null) => Promise<void>;\n  beforeIndexUpdate?: () => Promise<void>;\n  coordinate?: boolean;\n};\n\nexport async function runTombstoneBlockedMutation(\n  host: TombstoneBlockedMutationHost,\n  mutation: TombstoneBlockedMutation\n): Promise<void> {\n  let lockIdentity: string | readonly string[] = mutation.identity;\n  for (;;) {\n    let retryIdentity: string | undefined;\n    const mutate = async (): Promise<void> => {\n      const current = await host.readCurrent();\n      const currentBlocked = host.isBlocked(current);\n      const currentQueuedReview = host.isQueuedReview(current);\n      if (current !== null && (mutation.coordinate === true || currentBlocked || currentQueuedReview)) {\n        const currentIdentity = host.memoryIdentity(current);\n        const heldIdentities = Array.isArray(lockIdentity) ? lockIdentity : [lockIdentity];\n        if (!heldIdentities.includes(currentIdentity)) {\n          retryIdentity = currentIdentity;\n          return;\n        }\n      }\n      const rebuildMarker = mutation.blocked || currentBlocked ? await host.prepareWrite() : undefined;\n      try {\n        await host.writeStorageSecureFile(mutation.pathname, mutation.fileContent);\n      } catch (err) {\n        if (rebuildMarker) {\n          try {\n            await host.discardWrite(rebuildMarker);\n          } catch (cleanupError) {\n            host.markUntrusted();\n            host.logWarning(`storage.tombstoneBlocked failed to clear write marker: ${cleanupError}`);\n          }\n        }\n        throw err;\n      }\n      if (rebuildMarker) {\n        try {\n          await host.commitWrite(rebuildMarker);\n        } catch (err) {\n          host.markUntrusted();\n          host.logWarning(`storage.tombstoneBlocked committed write marker failed: ${err}`);\n        }\n      }\n      if (rebuildMarker) await mutation.beforeIndexUpdate?.();\n      await mutation.updateIndex(rebuildMarker, currentBlocked && current !== null ? current : undefined);\n    };\n    await host.withCaptureWriteLock(mutate, lockIdentity);\n    if (retryIdentity === undefined) return;\n    const identities = Array.isArray(lockIdentity) ? [...lockIdentity, retryIdentity] : [lockIdentity, retryIdentity];\n    lockIdentity = [...new Set(identities)];\n  }\n}\n\nexport function tombstoneBlocked(frontmatter: MemoryFrontmatter): boolean {\n  return frontmatter.status === \"pending_review\" && Boolean(frontmatter.blockedBy);\n}\n\nexport function isQueuedReviewFrontmatter(frontmatter: MemoryFrontmatter): boolean {\n  return frontmatter.status === \"pending_review\" && (frontmatter.tags ?? []).includes(\"queued-review\");\n}\n\nexport function isQueuedReviewMemory(memory: MemoryFile | null): memory is MemoryFile {\n  return memory !== null && isQueuedReviewFrontmatter(memory.frontmatter);\n}\n","import { createHash, randomUUID, type Hash } from \"node:crypto\";\nimport { unlink } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { isDeepStrictEqual } from \"node:util\";\nimport { log } from \"../logger.js\";\nimport type { MemoryFile, MemoryFrontmatter } from \"../types.js\";\nimport { markProjectedMemoryPathInvalid } from \"../memory-projection-store.js\";\nimport { RECALL_FALLBACK_DIRS } from \"../utils/category-dir.js\";\nimport { isErrnoCode } from \"../utils/errno.js\";\nimport { pathMayCarryEntityRefs, requestEntityCanonicalIdReconcile } from \"./entity-canonical-id-references.js\";\nimport { withRawEntityPageMutation } from \"./entity-canonical-id-lock.js\";\nimport { readMaybeEncryptedFileFromChunks, writeMaybeEncryptedFileFromChunks } from \"../secure-store/secure-fs.js\";\nimport {\n  buildExplicitCaptureDedupKey,\n  buildCapturePathLockIdentity,\n  captureIdentityHash,\n  tombstoneBlocked,\n  isQueuedReviewMemory,\n  runTombstoneBlockedMutation,\n  type TombstoneBlockedMutationHost,\n} from \"./tombstone-blocked-capture-mutation.js\";\nimport { TombstoneBlockedCaptureIndex } from \"./tombstone-blocked-capture-index.js\";\nimport type { TombstoneBlockedCaptureIndexOptions } from \"./tombstone-blocked-capture-index.js\";\n\nconst OFFLINE_SYNC_BUFFER_LIMIT_BYTES = 1_048_576;\nconst OFFLINE_SYNC_STAGE_READ_BYTES = 64 * 1024;\nconst OFFLINE_SYNC_FRONTMATTER_DELIMITER = Buffer.from(\"\\n---\\n\", \"utf8\");\n\nconst CASED_CHARACTER = /\\p{Cased}/u;\nconst CASE_IGNORABLE_CHARACTER = /\\p{Case_Ignorable}/u;\n\ntype StreamedOfflineSyncIdentity = {\n  identityHash: string;\n};\n\ntype PreparedOfflineSyncChunks = {\n  after: MemoryFile | null;\n  chunks: AsyncIterable<Buffer>;\n  stagePath?: string;\n  streamedIdentity?: StreamedOfflineSyncIdentity;\n};\n\ntype ExplicitContentNormalizerSink = {\n  write: (chunk: string) => void;\n  beginConditionalSigma: () => void;\n  resolveConditionalSigma: (useFinalSigma: boolean) => void;\n};\n\nfunction createExplicitContentNormalizer(sink: ExplicitContentNormalizerSink): {\n  push: (text: string) => void;\n  finish: () => void;\n} {\n  let started = false;\n  let pendingSpace = false;\n  let output = \"\";\n  let precededByCased = false;\n  let pendingSigma = false;\n  const flush = () => {\n    if (output.length > 0) {\n      sink.write(output);\n      output = \"\";\n    }\n  };\n  const emit = (text: string) => {\n    for (const character of text) {\n      if (/\\s/u.test(character)) {\n        if (started) pendingSpace = true;\n        continue;\n      }\n      if (pendingSpace) {\n        output += \" \";\n        pendingSpace = false;\n      }\n      output += character;\n      started = true;\n      if (output.length >= OFFLINE_SYNC_STAGE_READ_BYTES) flush();\n    }\n  };\n  const resolveSigma = (followedByCased: boolean) => {\n    flush();\n    sink.resolveConditionalSigma(!followedByCased);\n    pendingSigma = false;\n  };\n  const push = (text: string) => {\n    for (const character of text) {\n      const caseIgnorable = CASE_IGNORABLE_CHARACTER.test(character);\n      const cased = CASED_CHARACTER.test(character);\n      if (pendingSigma) {\n        if (caseIgnorable) {\n          emit(character.toLowerCase());\n          continue;\n        }\n        resolveSigma(cased);\n      }\n      if (character === \"Σ\" && precededByCased) {\n        flush();\n        sink.beginConditionalSigma();\n        pendingSigma = true;\n        precededByCased = true;\n        continue;\n      }\n      emit(character.toLowerCase());\n      if (!caseIgnorable) precededByCased = cased;\n    }\n  };\n  return {\n    push,\n    finish() {\n      if (pendingSigma) resolveSigma(false);\n      flush();\n    },\n  };\n}\n\nasync function forEachStagedTextChunk(\n  stagePath: string,\n  offset: number,\n  onText: (text: string) => void,\n  key: Buffer | null,\n  memoryDir: string\n): Promise<void> {\n  const decoder = new TextDecoder(\"utf-8\");\n  let remaining = offset;\n  for await (const chunk of readMaybeEncryptedFileFromChunks(stagePath, key, memoryDir)) {\n    const textChunk = remaining >= chunk.length ? null : chunk.subarray(remaining);\n    remaining = Math.max(0, remaining - chunk.length);\n    if (textChunk === null || textChunk.length === 0) continue;\n    const text = decoder.decode(textChunk, { stream: true });\n    if (text.length > 0) onText(text);\n  }\n  const finalText = decoder.decode();\n  if (finalText.length > 0) onText(finalText);\n}\n\nasync function findStagedBodyOffset(stagePath: string, key: Buffer | null, memoryDir: string): Promise<number | null> {\n  let scannedBytes = 0;\n  let tail = Buffer.alloc(0);\n  for await (const chunk of readMaybeEncryptedFileFromChunks(stagePath, key, memoryDir)) {\n    const window = tail.length > 0 ? Buffer.concat([tail, chunk]) : chunk;\n    const windowStart = scannedBytes - tail.length;\n    for (let searchFrom = 0; ; ) {\n      const delimiterStart = window.indexOf(OFFLINE_SYNC_FRONTMATTER_DELIMITER, searchFrom);\n      if (delimiterStart < 0) break;\n      if (windowStart + delimiterStart >= 4) {\n        return windowStart + delimiterStart + OFFLINE_SYNC_FRONTMATTER_DELIMITER.length;\n      }\n      searchFrom = delimiterStart + 1;\n    }\n    scannedBytes += chunk.length;\n    const tailLength = Math.min(OFFLINE_SYNC_FRONTMATTER_DELIMITER.length - 1, window.length);\n    tail = Buffer.from(window.subarray(window.length - tailLength));\n  }\n  return null;\n}\n\nasync function readStagedPrefix(\n  stagePath: string,\n  byteLimit: number,\n  key: Buffer | null,\n  memoryDir: string\n): Promise<Buffer> {\n  const chunks: Buffer[] = [];\n  let bytesRead = 0;\n  for await (const chunk of readMaybeEncryptedFileFromChunks(stagePath, key, memoryDir)) {\n    const length = Math.min(chunk.length, byteLimit - bytesRead);\n    if (length > 0) chunks.push(chunk.subarray(0, length));\n    bytesRead += length;\n    if (bytesRead >= byteLimit) break;\n  }\n  return Buffer.concat(chunks, bytesRead);\n}\n\nexport type OfflineSyncMemoryParser = (filePath: string, content: Buffer) => MemoryFile | null;\n\nexport function parseTombstoneBlockedOfflineSyncMemory(\n  filePath: string,\n  content: Buffer,\n  memoryDir: string,\n  parseFrontmatter: (raw: string) => { frontmatter: MemoryFrontmatter; content: string } | null,\n  normalizeFrontmatterForPath: (frontmatter: MemoryFrontmatter, pathRel: string, content?: string) => MemoryFrontmatter,\n  toMemoryPathRel: (baseDir: string, filePath: string) => string\n): MemoryFile | null {\n  const parsed = parseFrontmatter(content.toString(\"utf8\"));\n  if (!parsed) return null;\n  return {\n    path: filePath,\n    frontmatter: normalizeFrontmatterForPath(parsed.frontmatter, toMemoryPathRel(memoryDir, filePath), parsed.content),\n    content: parsed.content,\n  };\n}\n\nexport abstract class TombstoneBlockedCaptureIndexHost {\n  private tombstoneBlockedCaptureIndex: TombstoneBlockedCaptureIndex | null = null;\n  protected abstract tombstoneBlockedCaptureIndexOptions(): TombstoneBlockedCaptureIndexOptions;\n  protected abstract writeStorageSecureFile(\n    filePath: string,\n    content: string | Buffer,\n    forceEncrypt?: boolean\n  ): Promise<void>;\n  protected abstract assertManagedStoragePath(filePath: string, method: string): string;\n  protected abstract notifyCatalogWriteForPath(filePath: string): void;\n  protected abstract readMemoryByPath(filePath: string): Promise<MemoryFile | null>;\n  protected abstract invalidateAllMemoriesCache(): void;\n  protected abstract invalidateKnowledgeIndexCache(): void;\n  protected abstract invalidateColdMemoriesCache(): void;\n  protected abstract bumpArtifactWriteVersion(): number;\n  protected abstract bumpMemoryStatusVersion(): void;\n  protected abstract bumpMemoryCorpusVersion(): void;\n  protected abstract markFactHashIndexNotAuthoritative(): void;\n  protected abstract deleteManagedStorageFile(filePath: string, deletionMtimeMs?: number | null): Promise<boolean>;\n  protected abstract writeManagedStorageFile(filePath: string, write: () => Promise<void>): Promise<void>;\n\n  private async writeStorageSecureFileChunks(filePath: string, chunks: AsyncIterable<Buffer>): Promise<void> {\n    const options = this.tombstoneBlockedCaptureIndexOptions();\n    await writeMaybeEncryptedFileFromChunks(\n      filePath,\n      chunks,\n      options.secureStoreWriteKeyProvider(),\n      {},\n      options.memoryDir\n    );\n    this.notifyCatalogWriteForPath(filePath);\n  }\n\n  protected getTombstoneBlockedCaptureIndex(): TombstoneBlockedCaptureIndex {\n    if (this.tombstoneBlockedCaptureIndex === null) {\n      this.tombstoneBlockedCaptureIndex = new TombstoneBlockedCaptureIndex(this.tombstoneBlockedCaptureIndexOptions());\n    }\n    return this.tombstoneBlockedCaptureIndex;\n  }\n  async withTombstoneBlockedCaptureWriteLock<T>(\n    task: () => Promise<T>,\n    identity?: string | readonly string[]\n  ): Promise<T> {\n    return await this.getTombstoneBlockedCaptureIndex().withCaptureWriteLock(task, identity);\n  }\n\n  protected async withTombstoneBlockedCaptureWriteLockAndHashes<T>(\n    task: () => Promise<T>,\n    identity: string | readonly string[] | undefined,\n    identityHashes: readonly string[]\n  ): Promise<T> {\n    return await this.getTombstoneBlockedCaptureIndex().withCaptureWriteLockAndHashes(task, identity, identityHashes);\n  }\n\n  private async writeTombstoneBlockedMutation(\n    blocked: boolean,\n    pathname: string,\n    fileContent: string,\n    identity: string | readonly string[],\n    updateIndex: (rebuildMarker?: string, current?: MemoryFile | null) => Promise<void>,\n    beforeIndexUpdate?: () => Promise<void>,\n    coordinate = false\n  ): Promise<void> {\n    const host: TombstoneBlockedMutationHost = {\n      readCurrent: () => this.readMemoryByPath(pathname),\n      isBlocked: (memory) => this.isTombstoneBlockedMemory(memory),\n      isQueuedReview: (memory) => isQueuedReviewMemory(memory),\n      memoryIdentity: (memory) => this.offlineSyncMemoryIdentity(memory),\n      prepareWrite: () => this.getTombstoneBlockedCaptureIndex().prepareWrite(),\n      commitWrite: (marker) => this.getTombstoneBlockedCaptureIndex().commitWrite(marker),\n      discardWrite: (marker) => this.getTombstoneBlockedCaptureIndex().discardWrite(marker),\n      markUntrusted: () => this.getTombstoneBlockedCaptureIndex().markUntrusted(),\n      writeStorageSecureFile: (target, content) => this.writeStorageSecureFile(target, content),\n      withCaptureWriteLock: (task, lockIdentity) => this.withTombstoneBlockedCaptureWriteLock(task, lockIdentity),\n      logWarning: (message) => log.warn(message),\n    };\n    await runTombstoneBlockedMutation(host, {\n      blocked,\n      pathname,\n      fileContent,\n      identity,\n      updateIndex,\n      beforeIndexUpdate,\n      coordinate,\n    });\n  }\n\n  protected async writeTombstoneBlockedMemory(\n    pathname: string,\n    fileContent: string,\n    frontmatter: MemoryFrontmatter,\n    content: string,\n    beforeIndexUpdate?: () => Promise<void>\n  ): Promise<void> {\n    await this.writeTombstoneBlockedMutation(\n      tombstoneBlocked(frontmatter),\n      pathname,\n      fileContent,\n      [\n        buildCapturePathLockIdentity(pathname),\n        buildExplicitCaptureDedupKey(content, frontmatter.category, frontmatter.sourceConnector),\n      ],\n      (rebuildMarker) =>\n        this.getTombstoneBlockedCaptureIndex().addWrittenMemory(pathname, frontmatter, content, rebuildMarker),\n      beforeIndexUpdate\n    );\n  }\n\n  protected async withTombstoneBlockedMemoryPathLock<T>(\n    pathname: string,\n    task: (current: MemoryFile | null) => Promise<T>,\n    additionalPathnames: readonly string[] = []\n  ): Promise<T> {\n    let lockIdentities = [pathname, ...additionalPathnames].map(buildCapturePathLockIdentity);\n    for (;;) {\n      let retryIdentity: string | undefined;\n      let result: T | undefined;\n      await this.withTombstoneBlockedCaptureWriteLock(async () => {\n        const current = await this.readMemoryByPath(pathname);\n        if (current !== null) {\n          const currentIdentity = this.offlineSyncMemoryIdentity(current);\n          if (!lockIdentities.includes(currentIdentity)) {\n            retryIdentity = currentIdentity;\n            return;\n          }\n        }\n        result = await task(current);\n      }, lockIdentities);\n      if (retryIdentity !== undefined) {\n        lockIdentities = [...new Set([...lockIdentities, retryIdentity])];\n        continue;\n      }\n      return result!;\n    }\n  }\n\n  protected async writeTombstoneBlockedChunk(\n    pathname: string,\n    fileContent: string,\n    frontmatter: MemoryFrontmatter,\n    content: string,\n    findDuplicate: () => Promise<MemoryFile | null>,\n    afterWrite: (current: MemoryFile | null) => Promise<void>\n  ): Promise<string> {\n    const incomingIdentity = buildExplicitCaptureDedupKey(content, frontmatter.category, frontmatter.sourceConnector);\n    let lockIdentities = [buildCapturePathLockIdentity(pathname), incomingIdentity];\n    for (;;) {\n      let retryIdentity: string | undefined;\n      let result = frontmatter.id;\n      await this.withTombstoneBlockedCaptureWriteLock(async () => {\n        const current = await this.readMemoryByPath(pathname);\n        if (current !== null) {\n          const currentIdentity = this.offlineSyncMemoryIdentity(current);\n          if (!lockIdentities.includes(currentIdentity)) {\n            retryIdentity = currentIdentity;\n            return;\n          }\n        }\n        if (tombstoneBlocked(frontmatter)) {\n          const duplicate = await findDuplicate();\n          if (duplicate) {\n            result = duplicate.frontmatter.id;\n            return;\n          }\n        }\n        await this.writeTombstoneBlockedMemory(pathname, fileContent, frontmatter, content);\n        await afterWrite(current);\n      }, lockIdentities);\n      if (retryIdentity === undefined) return result;\n      lockIdentities = [...new Set([...lockIdentities, retryIdentity])];\n    }\n  }\n\n  protected async writeTombstoneBlockedUpdate(\n    before: MemoryFile,\n    fileContent: string,\n    frontmatter: MemoryFrontmatter,\n    content: string,\n    beforeIndexUpdate?: () => Promise<void>\n  ): Promise<void> {\n    await this.writeTombstoneBlockedMutation(\n      tombstoneBlocked(before.frontmatter) || tombstoneBlocked(frontmatter),\n      before.path,\n      fileContent,\n      [\n        buildCapturePathLockIdentity(before.path),\n        this.offlineSyncMemoryIdentity(before),\n        buildExplicitCaptureDedupKey(content, frontmatter.category, frontmatter.sourceConnector),\n      ],\n      (rebuildMarker, current) =>\n        this.getTombstoneBlockedCaptureIndex().syncUpdatedMemory(\n          current ?? before,\n          frontmatter,\n          content,\n          rebuildMarker\n        ),\n      beforeIndexUpdate,\n      true\n    );\n  }\n\n  protected async writeTombstoneBlockedFrontmatter(\n    before: MemoryFile,\n    fileContent: string,\n    frontmatter: MemoryFrontmatter,\n    beforeIndexUpdate?: () => Promise<void>\n  ): Promise<void> {\n    await this.writeTombstoneBlockedMutation(\n      tombstoneBlocked(before.frontmatter) || tombstoneBlocked(frontmatter),\n      before.path,\n      fileContent,\n      [\n        buildCapturePathLockIdentity(before.path),\n        this.offlineSyncMemoryIdentity(before),\n        buildExplicitCaptureDedupKey(before.content, frontmatter.category, frontmatter.sourceConnector),\n      ],\n      (rebuildMarker, current) =>\n        this.getTombstoneBlockedCaptureIndex().syncUpdatedFrontmatter(current ?? before, frontmatter, rebuildMarker),\n      beforeIndexUpdate,\n      true\n    );\n  }\n\n  private isTombstoneBlockedMemory(memory: MemoryFile | null): memory is MemoryFile {\n    return memory !== null && memory.frontmatter.status === \"pending_review\" && Boolean(memory.frontmatter.blockedBy);\n  }\n\n  private offlineSyncMemoryIdentity(memory: MemoryFile): string {\n    return buildExplicitCaptureDedupKey(\n      memory.content,\n      memory.frontmatter.category,\n      memory.frontmatter.sourceConnector\n    );\n  }\n  private async isDuplicateTombstoneBlockedOfflineSync(\n    target: string,\n    incoming: MemoryFile,\n    streamedIdentity?: StreamedOfflineSyncIdentity\n  ): Promise<boolean> {\n    const before = await this.readMemoryByPath(target);\n    const duplicate = streamedIdentity\n      ? true\n      : await this.getTombstoneBlockedCaptureIndex().has(\n          incoming.content,\n          incoming.frontmatter.category,\n          incoming.frontmatter.sourceConnector\n        );\n    if (!duplicate) return false;\n    const incomingIdentity = streamedIdentity?.identityHash ?? this.offlineSyncMemoryIdentity(incoming);\n    const options = this.tombstoneBlockedCaptureIndexOptions();\n    const existing = [...(await options.readAllMemories()), ...(await options.readAllColdMemories())];\n    const exactMatch = existing.some(\n      (memory) =>\n        this.isTombstoneBlockedMemory(memory) &&\n        (streamedIdentity ? captureIdentityHash(memory) : this.offlineSyncMemoryIdentity(memory)) === incomingIdentity\n    );\n    if (!exactMatch) return false;\n    if (before === null) return true;\n    if (!this.isTombstoneBlockedMemory(before)) return false;\n    const beforeIdentity = streamedIdentity ? captureIdentityHash(before) : this.offlineSyncMemoryIdentity(before);\n    if (beforeIdentity !== incomingIdentity) return false;\n    return streamedIdentity\n      ? isDeepStrictEqual(before.frontmatter, incoming.frontmatter)\n      : before.content === incoming.content && isDeepStrictEqual(before.frontmatter, incoming.frontmatter);\n  }\n\n  private async invalidateAfterOfflineSyncMutation(filePath: string, ownedMarker?: string): Promise<void> {\n    this.invalidateAllMemoriesCache();\n    this.invalidateKnowledgeIndexCache();\n    this.markFactHashIndexNotAuthoritative();\n    if (filePath.includes(`${path.sep}cold${path.sep}`)) {\n      this.invalidateColdMemoriesCache();\n    }\n    await this.rebuildTombstoneBlockedCaptureAfterInvalidationForPath(filePath, ownedMarker);\n    if (filePath.includes(`${path.sep}artifacts${path.sep}`)) {\n      this.bumpArtifactWriteVersion();\n    }\n    this.bumpMemoryStatusVersion();\n  }\n\n  protected async runTombstoneBlockedArchive(\n    memory: MemoryFile,\n    task: (current: MemoryFile, markDurable: () => void) => Promise<string | null>\n  ): Promise<string | null> {\n    let archivedPath: string | null = null;\n    const archived = await this.runTombstoneBlockedInvalidation(memory, async (current, rebuildMarker, markDurable) => {\n      let archiveDurable = false;\n      const markArchiveDurable = () => {\n        archiveDurable = true;\n        markDurable();\n      };\n      archivedPath = await task(current, markArchiveDurable);\n      if (rebuildMarker !== undefined && (archivedPath !== null || archiveDurable)) {\n        await this.rebuildTombstoneBlockedCaptureAfterInvalidation(rebuildMarker);\n      } else if (rebuildMarker !== undefined) {\n        const index = this.getTombstoneBlockedCaptureIndex();\n        try {\n          await index.discardWrite(rebuildMarker);\n        } catch {\n          index.markUntrusted();\n        }\n      }\n      return archivedPath !== null;\n    });\n    return archived ? archivedPath : null;\n  }\n\n  protected async runTombstoneBlockedInvalidation(\n    memory: MemoryFile,\n    task: (current: MemoryFile, rebuildMarker: string | undefined, markDurable: () => void) => Promise<boolean>,\n    propagateErrors = false,\n    coordinate = false\n  ): Promise<boolean> {\n    let lockIdentities = [\n      buildCapturePathLockIdentity(memory.path),\n      ...(coordinate || this.isTombstoneBlockedMemory(memory) || isQueuedReviewMemory(memory)\n        ? [this.offlineSyncMemoryIdentity(memory)]\n        : []),\n    ];\n    for (;;) {\n      const attempt = async () => {\n        const options = this.tombstoneBlockedCaptureIndexOptions();\n        const current =\n          (await this.readMemoryByPath(memory.path)) ??\n          (await options.readAllMemories()).find((candidate) => candidate.frontmatter.id === memory.frontmatter.id) ??\n          (await options.readAllColdMemories()).find((candidate) => candidate.frontmatter.id === memory.frontmatter.id);\n        if (!current) return { result: false };\n        const blocked = this.isTombstoneBlockedMemory(current);\n        const queuedReview = isQueuedReviewMemory(current);\n        if (blocked || queuedReview) {\n          const currentIdentity = this.offlineSyncMemoryIdentity(current);\n          if (!lockIdentities.includes(currentIdentity)) return { retryIdentity: currentIdentity };\n        }\n        const blockedIndex = blocked ? this.getTombstoneBlockedCaptureIndex() : null;\n        let rebuildMarker: string | undefined;\n        let durable = false;\n        try {\n          if (blockedIndex) rebuildMarker = await blockedIndex.prepareWrite();\n          const result = await task(current, rebuildMarker, () => {\n            durable = true;\n          });\n          if (!result && rebuildMarker && !durable && blockedIndex) {\n            try {\n              await blockedIndex.discardWrite(rebuildMarker);\n            } catch {\n              blockedIndex.markUntrusted();\n            }\n          }\n          return { result };\n        } catch (error) {\n          if (rebuildMarker && !durable && blockedIndex) {\n            try {\n              await blockedIndex.discardWrite(rebuildMarker);\n            } catch {\n              blockedIndex.markUntrusted();\n            }\n          }\n          if (propagateErrors) throw error;\n          return { result: false };\n        }\n      };\n      const result = await this.withTombstoneBlockedCaptureWriteLock(attempt, lockIdentities);\n      if (result.retryIdentity !== undefined) {\n        lockIdentities = [...new Set([...lockIdentities, result.retryIdentity])];\n        continue;\n      }\n      return result.result;\n    }\n  }\n  async deleteMemoryForMaintenance(\n    memory: MemoryFile,\n    shouldDelete: (current: MemoryFile) => boolean = () => true\n  ): Promise<MemoryFile | null> {\n    let deleted: MemoryFile | null = null;\n    const removed = await this.runTombstoneBlockedInvalidation(\n      memory,\n      async (current, rebuildMarker, markDurable) => {\n        if (!shouldDelete(current)) return false;\n        if (!(await this.deleteManagedStorageFile(current.path))) return false;\n        markDurable();\n        deleted = current;\n        const memoryDir = this.tombstoneBlockedCaptureIndexOptions().memoryDir;\n        markProjectedMemoryPathInvalid(memoryDir, current.frontmatter.id);\n        this.invalidateAllMemoriesCache();\n        if (current.path.includes(`${path.sep}cold${path.sep}`)) {\n          this.invalidateColdMemoriesCache();\n        }\n        await this.rebuildTombstoneBlockedCaptureAfterInvalidation(rebuildMarker);\n        this.bumpMemoryCorpusVersion();\n        this.bumpMemoryStatusVersion();\n        return true;\n      },\n      true,\n      true\n    );\n    return removed ? deleted : null;\n  }\n\n  protected async runTombstoneBlockedOfflineSyncMutation(\n    target: string,\n    after: MemoryFile | null,\n    write: () => Promise<void>,\n    coordinate = false,\n    streamedIdentity?: StreamedOfflineSyncIdentity\n  ): Promise<void> {\n    for (;;) {\n      const before = await this.readMemoryByPath(target);\n      const targetIdentity = before === null ? undefined : this.offlineSyncMemoryIdentity(before);\n      const afterIdentity = after === null || streamedIdentity ? undefined : this.offlineSyncMemoryIdentity(after);\n      const mustCoordinate =\n        coordinate || targetIdentity !== undefined || afterIdentity !== undefined || streamedIdentity !== undefined;\n      const identities = [\n        ...(mustCoordinate ? [buildCapturePathLockIdentity(target)] : []),\n        ...(targetIdentity === undefined ? [] : [targetIdentity]),\n        ...(afterIdentity === undefined ? [] : [afterIdentity]),\n      ];\n      let retryIdentity: string | undefined;\n      const mutate = async (): Promise<void> => {\n        const current = await this.readMemoryByPath(target);\n        if (current !== null) {\n          const currentIdentity = this.offlineSyncMemoryIdentity(current);\n          if (currentIdentity !== targetIdentity) {\n            retryIdentity = currentIdentity;\n            return;\n          }\n        }\n        if (\n          this.isTombstoneBlockedMemory(after) &&\n          (await this.isDuplicateTombstoneBlockedOfflineSync(target, after, streamedIdentity))\n        ) {\n          return;\n        }\n        const affectsBlockedIndex =\n          coordinate || this.isTombstoneBlockedMemory(current) || this.isTombstoneBlockedMemory(after);\n        const marker = affectsBlockedIndex ? await this.getTombstoneBlockedCaptureIndex().prepareWrite() : undefined;\n        let durable = false;\n        try {\n          await write();\n          durable = true;\n          if (marker) {\n            try {\n              await this.getTombstoneBlockedCaptureIndex().commitWrite(marker);\n            } catch (err) {\n              this.getTombstoneBlockedCaptureIndex().markUntrusted();\n              log.warn(`storage.offlineSyncFile committed write marker failed: ${err}`);\n            }\n          }\n          await this.invalidateAfterOfflineSyncMutation(target, marker);\n        } catch (err) {\n          if (marker && !durable) {\n            try {\n              await this.getTombstoneBlockedCaptureIndex().discardWrite(marker);\n            } catch (cleanupError) {\n              this.getTombstoneBlockedCaptureIndex().markUntrusted();\n              log.warn(`storage.offlineSyncFile failed to clear write marker: ${cleanupError}`);\n            }\n          }\n          throw err;\n        }\n      };\n      if (!mustCoordinate) {\n        await mutate();\n      } else if (streamedIdentity) {\n        await this.withTombstoneBlockedCaptureWriteLockAndHashes(mutate, identities, [streamedIdentity.identityHash]);\n      } else {\n        await this.withTombstoneBlockedCaptureWriteLock(mutate, identities);\n      }\n      if (retryIdentity !== undefined) continue;\n      return;\n    }\n  }\n\n  protected async writeTombstoneBlockedOfflineSyncFile(target: string, content: Buffer): Promise<void> {\n    const options = this.tombstoneBlockedCaptureIndexOptions();\n    const after = options.parseMemory?.(target, content) ?? null;\n    await withRawEntityPageMutation(path.dirname(options.stateDir), target, async () => {\n      await this.runTombstoneBlockedOfflineSyncMutation(\n        target,\n        after,\n        () => this.writeManagedStorageFile(target, () => this.writeStorageSecureFile(target, content))\n      );\n    });\n  }\n\n  private async prepareTombstoneBlockedOfflineSyncChunks(\n    target: string,\n    chunks: AsyncIterable<Buffer>\n  ): Promise<PreparedOfflineSyncChunks> {\n    const parseMemory = this.tombstoneBlockedCaptureIndexOptions().parseMemory;\n    if (!parseMemory) return { after: null, chunks };\n\n    const iterator = chunks[Symbol.asyncIterator]();\n    const buffered: Buffer[] = [];\n    let bufferedBytes = 0;\n    let firstOverflow: Buffer | undefined;\n    for (;;) {\n      const next = await iterator.next();\n      if (next.done) break;\n      if (bufferedBytes + next.value.length > OFFLINE_SYNC_BUFFER_LIMIT_BYTES) {\n        firstOverflow = next.value;\n        break;\n      }\n      bufferedBytes += next.value.length;\n      buffered.push(next.value);\n    }\n    const overflow = firstOverflow;\n    if (overflow === undefined) {\n      let after: MemoryFile | null = null;\n      try {\n        after = parseMemory(target, Buffer.concat(buffered));\n      } catch {\n        after = null;\n      }\n      const replay = (async function* (): AsyncIterable<Buffer> {\n        for (const chunk of buffered) yield chunk;\n      })();\n      return { after, chunks: replay };\n    }\n\n    const options = this.tombstoneBlockedCaptureIndexOptions();\n    const stagePath = path.join(\n      options.stateDir,\n      \"tombstone-blocked-capture\",\n      \"offline-sync-staging\",\n      `${randomUUID()}.stage`\n    );\n    const stagedChunks = (async function* (): AsyncIterable<Buffer> {\n      for (const chunk of buffered) yield chunk;\n      yield overflow;\n      for (;;) {\n        const next = await iterator.next();\n        if (next.done) break;\n        yield next.value;\n      }\n    })();\n    try {\n      await writeMaybeEncryptedFileFromChunks(\n        stagePath,\n        stagedChunks,\n        options.secureStoreWriteKeyProvider(),\n        { atomic: false },\n        options.memoryDir\n      );\n      return await this.describeStagedOfflineSyncChunks(target, stagePath, parseMemory);\n    } catch (err) {\n      await unlink(stagePath).catch(() => {});\n      throw err;\n    }\n  }\n\n  private async describeStagedOfflineSyncChunks(\n    target: string,\n    stagePath: string,\n    parseMemory: OfflineSyncMemoryParser\n  ): Promise<PreparedOfflineSyncChunks> {\n    const options = this.tombstoneBlockedCaptureIndexOptions();\n    const key = options.secureStoreKeyProvider();\n    const bodyOffset = await findStagedBodyOffset(stagePath, key, options.memoryDir);\n    if (bodyOffset === null) {\n      return { after: null, chunks: this.readStagedOfflineSyncChunks(stagePath), stagePath };\n    }\n    const prefix = await readStagedPrefix(stagePath, bodyOffset, key, options.memoryDir);\n    let after: MemoryFile | null = null;\n    try {\n      after = parseMemory(target, prefix.subarray(0, bodyOffset));\n    } catch {\n      after = null;\n    }\n    if (after === null) {\n      return { after: null, chunks: this.readStagedOfflineSyncChunks(stagePath), stagePath };\n    }\n    const streamedIdentity = await this.computeStagedOfflineSyncIdentity(stagePath, bodyOffset, after);\n    return {\n      after,\n      chunks: this.readStagedOfflineSyncChunks(stagePath),\n      stagePath,\n      streamedIdentity,\n    };\n  }\n\n  private async computeStagedOfflineSyncIdentity(\n    stagePath: string,\n    bodyOffset: number,\n    after: MemoryFile\n  ): Promise<StreamedOfflineSyncIdentity> {\n    let normalizedLength = 0;\n    const countNormalizer = createExplicitContentNormalizer({\n      write: (chunk) => {\n        normalizedLength += chunk.length;\n      },\n      beginConditionalSigma: () => {\n        normalizedLength += 1;\n      },\n      resolveConditionalSigma: () => {},\n    });\n    const options = this.tombstoneBlockedCaptureIndexOptions();\n    const key = options.secureStoreKeyProvider();\n    await forEachStagedTextChunk(stagePath, bodyOffset, (text) => countNormalizer.push(text), key, options.memoryDir);\n    countNormalizer.finish();\n\n    const category = after.frontmatter.category;\n    const connector = after.frontmatter.sourceConnector?.trim() ?? \"\";\n    const encode = (label: string, value: string): string => `${label} ${value.length} ${value}`;\n    const identityPrefix = [\n      encode(\"category\", category),\n      encode(\"connector\", connector),\n      `content ${normalizedLength} `,\n    ].join(\" \");\n    let identityHash = createHash(\"sha256\");\n    let normalSigmaIdentityHash: Hash | undefined;\n    identityHash.update(identityPrefix);\n    const identityNormalizer = createExplicitContentNormalizer({\n      write: (chunk) => {\n        identityHash.update(chunk);\n        normalSigmaIdentityHash?.update(chunk);\n      },\n      beginConditionalSigma: () => {\n        normalSigmaIdentityHash = identityHash.copy().update(\"σ\");\n        identityHash.update(\"ς\");\n      },\n      resolveConditionalSigma: (useFinalSigma) => {\n        if (!useFinalSigma) {\n          if (normalSigmaIdentityHash === undefined) throw new Error(\"conditional sigma hash state is missing\");\n          identityHash = normalSigmaIdentityHash;\n        }\n        normalSigmaIdentityHash = undefined;\n      },\n    });\n    await forEachStagedTextChunk(\n      stagePath,\n      bodyOffset,\n      (text) => identityNormalizer.push(text),\n      key,\n      options.memoryDir\n    );\n    identityNormalizer.finish();\n    return {\n      identityHash: identityHash.digest(\"hex\"),\n    };\n  }\n\n  private async *readStagedOfflineSyncChunks(stagePath: string): AsyncIterable<Buffer> {\n    const options = this.tombstoneBlockedCaptureIndexOptions();\n    for await (const chunk of readMaybeEncryptedFileFromChunks(\n      stagePath,\n      options.secureStoreKeyProvider(),\n      options.memoryDir\n    )) {\n      yield chunk;\n    }\n  }\n\n  protected async writeTombstoneBlockedOfflineSyncFileChunks(\n    target: string,\n    chunks: AsyncIterable<Buffer>\n  ): Promise<void> {\n    const coordinate = this.getTombstoneBlockedCaptureIndex().shouldRebuildAfterInvalidationForPath(target);\n    const prepared: PreparedOfflineSyncChunks = coordinate\n      ? await this.prepareTombstoneBlockedOfflineSyncChunks(target, chunks)\n      : { after: null, chunks };\n    const streamedIdentity = prepared.streamedIdentity;\n    const baseDir = path.dirname(this.tombstoneBlockedCaptureIndexOptions().stateDir);\n    try {\n      await withRawEntityPageMutation(baseDir, target, async () => {\n        await this.runTombstoneBlockedOfflineSyncMutation(\n          target,\n          prepared.after,\n          () => this.writeManagedStorageFile(target, () => this.writeStorageSecureFileChunks(target, prepared.chunks)),\n          coordinate,\n          streamedIdentity\n        );\n      });\n    } finally {\n      if (prepared.stagePath !== undefined) await unlink(prepared.stagePath).catch(() => {});\n    }\n  }\n\n  async writeOfflineSyncFile(filePath: string, content: Buffer): Promise<void> {\n    const target = this.assertManagedStoragePath(filePath, \"storage.writeOfflineSyncFile\");\n    await this.writeTombstoneBlockedOfflineSyncFile(target, content);\n    await this.requestSyncReconcileIfMigrationPath(target);\n  }\n\n  async writeOfflineSyncFileChunks(filePath: string, chunks: AsyncIterable<Buffer>): Promise<void> {\n    const target = this.assertManagedStoragePath(filePath, \"storage.writeOfflineSyncFileChunks\");\n    await this.writeTombstoneBlockedOfflineSyncFileChunks(target, chunks);\n    await this.requestSyncReconcileIfMigrationPath(target);\n  }\n\n  /**\n   * Opaque replicated bytes can restore legacy memory references or entity\n   * relationship targets. Other sync traffic must not request reconciliation.\n   */\n  private async requestSyncReconcileIfMigrationPath(target: string): Promise<void> {\n    const stateDir = this.tombstoneBlockedCaptureIndexOptions().stateDir;\n    if (!pathMayCarryEntityRefs(path.dirname(stateDir), target)) return;\n    await requestEntityCanonicalIdReconcile(stateDir);\n  }\n\n  async deleteOfflineSyncFile(filePath: string, deletionMtimeMs?: number | null): Promise<void> {\n    const target = this.assertManagedStoragePath(filePath, \"storage.deleteOfflineSyncFile\");\n    await this.deleteTombstoneBlockedOfflineSyncFile(target, deletionMtimeMs);\n    await this.requestSyncReconcileIfMigrationPath(target);\n  }\n\n  protected async deleteTombstoneBlockedOfflineSyncFile(\n    target: string,\n    deletionMtimeMs?: number | null\n  ): Promise<void> {\n    const stateDir = this.tombstoneBlockedCaptureIndexOptions().stateDir;\n    await withRawEntityPageMutation(path.dirname(stateDir), target, async () => {\n      await this.runTombstoneBlockedOfflineSyncMutation(target, null, async () => {\n        await this.deleteManagedStorageFile(target, deletionMtimeMs);\n      });\n    });\n  }\n\n  async checkTombstoneBlockedExplicitCapture(\n    ...args: [string, string, string?]\n  ): Promise<{ has: boolean; authoritative: boolean }> {\n    return this.getTombstoneBlockedCaptureIndex().check(...args);\n  }\n\n  async hasTombstoneBlockedExplicitCapture(...args: [string, string, string?]): Promise<boolean> {\n    return this.getTombstoneBlockedCaptureIndex().has(...args);\n  }\n\n  async isTombstoneBlockedExplicitCaptureIndexAuthoritative(): Promise<boolean> {\n    return this.getTombstoneBlockedCaptureIndex().isAuthoritative();\n  }\n\n  protected async rebuildTombstoneBlockedCaptureAfterInvalidationForPath(\n    filePath: string,\n    ownedMarker?: string\n  ): Promise<void> {\n    const index = this.getTombstoneBlockedCaptureIndex();\n    if (index.shouldRebuildAfterInvalidationForPath(filePath)) {\n      await this.rebuildTombstoneBlockedCaptureAfterInvalidation(ownedMarker);\n    }\n  }\n  protected async rebuildTombstoneBlockedCaptureAfterInvalidation(ownedMarker?: string): Promise<void> {\n    await this.getTombstoneBlockedCaptureIndex().rebuildAfterInvalidation(ownedMarker);\n  }\n}\n","import { execFile } from \"node:child_process\";\nimport { randomUUID } from \"node:crypto\";\nimport { mkdir, readFile, readdir, rename, stat, unlink, writeFile } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { promisify } from \"node:util\";\nimport { log } from \"../logger.js\";\nimport type { MemoryFile, MemoryFrontmatter } from \"../types.js\";\nimport { RECALL_FALLBACK_DIRS } from \"../utils/category-dir.js\";\nimport { isErrnoCode } from \"../utils/errno.js\";\nimport { withHeldFileLock } from \"../utils/serialize-mutations.js\";\nimport {\n  CONTENT_HASH_INDEX_RETRY_MAX_DELAY_MS,\n  ContentHashIndex,\n  type ContentHashIndexLockOptions,\n} from \"./content-hash-index.js\";\nimport {\n  buildExplicitCaptureDedupKey,\n  TombstoneBlockedCaptureWriteLock,\n} from \"./tombstone-blocked-capture-mutation.js\";\nimport type { OfflineSyncMemoryParser } from \"./tombstone-blocked-capture-sync.js\";\nexport {\n  buildExplicitCaptureDedupKey,\n  isTombstoneBlockedCaptureWriteLockBusy,\n  normalizeExplicitCaptureContent,\n} from \"./tombstone-blocked-capture-mutation.js\";\nexport {\n  parseTombstoneBlockedOfflineSyncMemory,\n  type OfflineSyncMemoryParser,\n  TombstoneBlockedCaptureIndexHost,\n} from \"./tombstone-blocked-capture-sync.js\";\n\nconst REBUILD_MAX_ATTEMPTS = 3;\nconst execFileAsync = promisify(execFile);\nconst REBUILD_RETRY_BASE_MS = 50;\n\nconst ABANDONED_MARKER_MIN_AGE_MS = 60_000;\nconst MARKER_PROCESS_START_TOLERANCE_MS = 2_000;\nconst DOTNET_UNIX_EPOCH_TICKS = 621_355_968_000_000_000;\nconst MARKER_PROCESS_STARTED_AT_MS = Date.now() - process.uptime() * 1000;\n\n\ntype RebuildMarker = {\n  path: string;\n  committed: boolean;\n  pid?: number;\n  ownerId?: string;\n  createdAt?: number;\n  processStartedAtMs?: number;\n  malformed?: boolean;\n};\n\n\nexport type TombstoneBlockedCaptureIndexOptions = {\n  readonly stateDir: string;\n  readonly memoryDir: string;\n  readonly secureStoreKeyProvider: () => Buffer | null;\n  readonly secureStoreWriteKeyProvider: () => Buffer | null;\n  readonly lockOptions: () => ContentHashIndexLockOptions;\n  readonly readAllMemories: () => Promise<MemoryFile[]>;\n  readonly readAllColdMemories: () => Promise<MemoryFile[]>;\n  readonly parseMemory?: OfflineSyncMemoryParser;\n  readonly withHeldFileLock?: typeof withHeldFileLock;\n};\n\n/**\n * Durable targeted deduplication for tombstone-blocked explicit captures.\n *\n * The active fact-hash index intentionally excludes blocked rows. This small\n * companion index keeps the blocked identity visible without making every\n * authoritative active-index miss scan the full corpus.\n */\nexport class TombstoneBlockedCaptureIndex {\n  private readonly options: TombstoneBlockedCaptureIndexOptions;\n  private index: ContentHashIndex | null = null;\n  private loadPromise: Promise<ContentHashIndex> | null = null;\n  private refreshPromise: Promise<ContentHashIndex> | null = null;\n  private authoritative = false;\n  private readonly captureWriteLock: TombstoneBlockedCaptureWriteLock;\n\n  constructor(options: TombstoneBlockedCaptureIndexOptions) {\n    this.options = options;\n    this.captureWriteLock = new TombstoneBlockedCaptureWriteLock(options);\n  }\n\n  private createIndex(): ContentHashIndex {\n    return new ContentHashIndex(\n      path.join(this.options.stateDir, \"tombstone-blocked-capture\"),\n      this.options.secureStoreKeyProvider,\n      this.options.secureStoreWriteKeyProvider,\n      this.options.memoryDir,\n      this.options.lockOptions()\n    );\n  }\n\n  private indexPath(): string {\n    return path.join(this.options.stateDir, \"tombstone-blocked-capture\", \"fact-hashes.txt\");\n  }\n\n  private rebuildMarkerPath(): string {\n    return path.join(this.options.stateDir, \"tombstone-blocked-capture\", \"rebuild-required\");\n  }\n\n  private async readRebuildMarkers(): Promise<RebuildMarker[]> {\n    try {\n      const entries = (await readdir(this.rebuildMarkerPath())).filter((entry) => !entry.startsWith(\".\"));\n      return (\n        await Promise.all(\n          entries.map(async (entry) => {\n            const markerPath = path.join(this.rebuildMarkerPath(), entry);\n            try {\n              const raw = (await readFile(markerPath, \"utf8\")).trim();\n              if (raw === \"committed\") return { path: markerPath, committed: true };\n              let value: Record<string, unknown>;\n              let malformed = false;\n              try {\n                const parsed = JSON.parse(raw) as unknown;\n                if (!parsed || typeof parsed !== \"object\" || Array.isArray(parsed)) {\n                  malformed = true;\n                  value = {};\n                } else {\n                  value = parsed as Record<string, unknown>;\n                }\n              } catch {\n                malformed = true;\n                value = {};\n              }\n              const state = value.state;\n              if (state !== \"pending\" && state !== \"committed\") malformed = true;\n              const markerStat = await stat(markerPath).catch(() => null);\n              // A torn payload can lose its JSON metadata, but the atomic\n              // marker filename and filesystem mtime still identify its owner\n              // and age. Preserve both so stale malformed markers can be\n              // reaped without treating a fresh pre-commit gap as abandoned.\n              const createdAt =\n                typeof value.createdAt === \"number\" && Number.isFinite(value.createdAt)\n                  ? value.createdAt\n                  : markerStat?.mtimeMs;\n              if (typeof value.pid !== \"number\" || !Number.isInteger(value.pid)) malformed = true;\n              const ownerId =\n                typeof value.ownerId === \"string\" && value.ownerId.length > 0\n                  ? value.ownerId\n                  : path.basename(markerPath);\n              if (typeof value.ownerId !== \"string\" || value.ownerId.length === 0) malformed = true;\n              const processStartedAtMs =\n                typeof value.processStartedAtMs === \"number\" &&\n                Number.isFinite(value.processStartedAtMs) &&\n                value.processStartedAtMs > 0\n                  ? value.processStartedAtMs\n                  : undefined;\n              return {\n                path: markerPath,\n                committed: state === \"committed\",\n                ...(typeof value.pid === \"number\" && Number.isInteger(value.pid) ? { pid: value.pid } : {}),\n                ...(ownerId.length > 0 ? { ownerId } : {}),\n                ...(typeof createdAt === \"number\" && Number.isFinite(createdAt) ? { createdAt } : {}),\n                ...(processStartedAtMs === undefined ? {} : { processStartedAtMs }),\n                ...(malformed ? { malformed: true } : {}),\n              };\n            } catch (err) {\n              if (isErrnoCode(err, \"ENOENT\")) return null;\n              throw err;\n            }\n          })\n        )\n      ).filter((marker): marker is RebuildMarker => marker !== null);\n    } catch (err) {\n      if (isErrnoCode(err, \"ENOENT\")) return [];\n      throw err;\n    }\n  }\n  private async isAbandonedMarker(marker: RebuildMarker): Promise<boolean> {\n    if (marker.committed || marker.createdAt === undefined) return false;\n    if (Date.now() - marker.createdAt < ABANDONED_MARKER_MIN_AGE_MS) return false;\n    if (marker.malformed) return true;\n    return marker.pid !== undefined && !(await this.isProcessAlive(marker.pid, marker.processStartedAtMs));\n  }\n\n  private async isProcessAlive(pid: number, processStartedAtMs?: number): Promise<boolean> {\n    try {\n      process.kill(pid, 0);\n    } catch (err) {\n      return !isErrnoCode(err, \"ESRCH\");\n    }\n    if (processStartedAtMs === undefined) return true;\n    const runningStartedAtMs = await this.readProcessStartedAtMs(pid);\n    if (runningStartedAtMs === null) return true;\n    return runningStartedAtMs <= processStartedAtMs + MARKER_PROCESS_START_TOLERANCE_MS;\n  }\n  private async readProcessStartedAtMs(pid: number): Promise<number | null> {\n    try {\n      if (process.platform === \"win32\") {\n        const { stdout } = await execFileAsync(\n          \"powershell.exe\",\n          [\n            \"-NoLogo\",\n            \"-NoProfile\",\n            \"-NonInteractive\",\n            \"-Command\",\n            `(Get-Process -Id ${pid} -ErrorAction Stop).StartTime.ToUniversalTime().Ticks`,\n          ],\n          { encoding: \"utf8\", timeout: 1_000 }\n        );\n        const ticks = Number(stdout.trim());\n        return Number.isFinite(ticks) ? (ticks - DOTNET_UNIX_EPOCH_TICKS) / 10_000 : null;\n      }\n      const { stdout } = await execFileAsync(\"ps\", [\"-p\", String(pid), \"-o\", \"lstart=\"], {\n        encoding: \"utf8\",\n        timeout: 1_000,\n      });\n      const output = stdout.trim();\n      if (!output) return null;\n      const startedAtMs = Date.parse(output);\n      return Number.isFinite(startedAtMs) ? startedAtMs : null;\n    } catch {\n      return null;\n    }\n  }\n\n  private async getClearableRebuildMarkerPaths(markers: readonly RebuildMarker[]): Promise<string[]> {\n    const paths = await Promise.all(\n      markers.map(async (marker) => (marker.committed || (await this.isAbandonedMarker(marker)) ? marker.path : null))\n    );\n    return paths.filter((markerPath): markerPath is string => markerPath !== null);\n  }\n\n  private async getRebuildMarkers(): Promise<RebuildMarker[]> {\n    return await this.readRebuildMarkers();\n  }\n\n  // A pending marker protects the pre-commit gap; only committed markers are safe for another writer to clear.\n  private async writeMarkerAtomically(markerPath: string, payload: string): Promise<void> {\n    const temporaryPath = `${markerPath}.tmp-${process.pid}-${randomUUID()}`;\n    try {\n      await writeFile(temporaryPath, payload, \"utf8\");\n      await rename(temporaryPath, markerPath);\n    } finally {\n      await unlink(temporaryPath).catch((err: unknown) => {\n        if (!isErrnoCode(err, \"ENOENT\")) throw err;\n      });\n    }\n  }\n\n  private async markRebuildRequired(committed = false): Promise<string> {\n    const markerDir = this.rebuildMarkerPath();\n    await mkdir(markerDir, { recursive: true });\n    const ownerId = randomUUID();\n    const markerPath = path.join(markerDir, ownerId);\n    await this.writeMarkerAtomically(\n      markerPath,\n      `${JSON.stringify({\n        state: committed ? \"committed\" : \"pending\",\n        pid: process.pid,\n        ownerId,\n        createdAt: Date.now(),\n        processStartedAtMs: MARKER_PROCESS_STARTED_AT_MS,\n      })}\\n`\n    );\n    return markerPath;\n  }\n\n  private async markRebuildCommitted(markerPath: string): Promise<void> {\n    await this.writeMarkerAtomically(\n      markerPath,\n      `${JSON.stringify({\n        state: \"committed\",\n        pid: process.pid,\n        ownerId: path.basename(markerPath),\n        createdAt: Date.now(),\n        processStartedAtMs: MARKER_PROCESS_STARTED_AT_MS,\n      })}\\n`\n    );\n  }\n\n  private async clearRebuildRequired(markerPaths: readonly string[]): Promise<void> {\n    await Promise.all(\n      markerPaths.map(async (markerPath) => {\n        try {\n          await unlink(markerPath);\n        } catch (err) {\n          if (!isErrnoCode(err, \"ENOENT\")) throw err;\n        }\n      })\n    );\n  }\n\n  private async hasRebuildRequired(excludedMarkers: readonly string[] = []): Promise<boolean> {\n    const excluded = new Set(excludedMarkers);\n    return (await this.getRebuildMarkers()).some((marker) => !excluded.has(marker.path));\n  }\n\n  private async setAuthoritative(rebuilt: boolean): Promise<void> {\n    this.authoritative = rebuilt && !(await this.getRebuildMarkers()).some((marker) => !marker.committed);\n  }\n  private isBlocked(memory: MemoryFile): boolean {\n    return memory.frontmatter.status === \"pending_review\" && Boolean(memory.frontmatter.blockedBy);\n  }\n\n  private async rebuild(index: ContentHashIndex): Promise<boolean> {\n    return await index.rebuildUnderLock(async () => {\n      index.clear();\n      const existing = [...(await this.options.readAllMemories()), ...(await this.options.readAllColdMemories())];\n      for (const memory of existing) {\n        if (!this.isBlocked(memory)) continue;\n        index.add(\n          buildExplicitCaptureDedupKey(memory.content, memory.frontmatter.category, memory.frontmatter.sourceConnector)\n        );\n      }\n    });\n  }\n\n  private async hasPersistedIndexOrMarkers(): Promise<boolean> {\n    try {\n      await stat(this.indexPath());\n      return true;\n    } catch (err) {\n      if (!isErrnoCode(err, \"ENOENT\")) throw err;\n      return (await this.readRebuildMarkers()).length > 0;\n    }\n  }\n\n  private async getIndex(): Promise<ContentHashIndex> {\n    if (this.index) return this.index;\n    if (!this.loadPromise) {\n      const index = this.createIndex();\n      this.loadPromise = (async () => {\n        await index.load();\n        const rebuildMarkers = await this.getRebuildMarkers();\n        const clearableRebuildMarkers = await this.getClearableRebuildMarkerPaths(rebuildMarkers);\n        let persisted = true;\n        try {\n          await stat(this.indexPath());\n          if (rebuildMarkers.length > 0) persisted = false;\n        } catch (err) {\n          if (isErrnoCode(err, \"ENOENT\")) persisted = false;\n          else throw err;\n        }\n        if (!persisted) {\n          const lockOptions = this.options.lockOptions();\n          const maxAttempts = lockOptions.retryMaxAttempts ?? REBUILD_MAX_ATTEMPTS;\n          const baseMs = lockOptions.retryBaseMs ?? REBUILD_RETRY_BASE_MS;\n          let rebuilt = false;\n          for (let attempt = 0; attempt < maxAttempts; attempt += 1) {\n            rebuilt = await this.rebuild(index);\n            if (rebuilt || attempt === maxAttempts - 1) break;\n            const wait = Math.min(baseMs * 2 ** attempt, CONTENT_HASH_INDEX_RETRY_MAX_DELAY_MS);\n            const delayState = Promise.withResolvers<void>();\n            setTimeout(delayState.resolve, wait);\n            await delayState.promise;\n          }\n          if (!rebuilt) {\n            throw new Error(\"tombstone-blocked capture index rebuild lock unavailable\");\n          }\n          await this.clearRebuildRequired(clearableRebuildMarkers);\n        }\n        await this.setAuthoritative(true);\n        this.index = index;\n        return index;\n      })().catch((err) => {\n        this.loadPromise = null;\n        throw err;\n      });\n    }\n    return this.loadPromise;\n  }\n\n  async withCaptureWriteLock<T>(task: () => Promise<T>, identity?: string | readonly string[]): Promise<T> {\n    return await this.captureWriteLock.withCaptureWriteLock(task, identity);\n  }\n\n  async withCaptureWriteLockHashes<T>(task: () => Promise<T>, identityHashes: readonly string[]): Promise<T> {\n    return await this.captureWriteLock.withCaptureWriteLockHashes(task, identityHashes);\n  }\n  async withCaptureWriteLockAndHashes<T>(\n    task: () => Promise<T>,\n    identity: string | readonly string[] | undefined,\n    identityHashes: readonly string[]\n  ): Promise<T> {\n    return await this.captureWriteLock.withCaptureWriteLockAndHashes(task, identity, identityHashes);\n  }\n\n  private async reload(): Promise<ContentHashIndex> {\n    if (!this.refreshPromise) {\n      this.refreshPromise = (async () => {\n        this.index = null;\n        this.loadPromise = null;\n        return await this.getIndex();\n      })().finally(() => {\n        this.refreshPromise = null;\n      });\n    }\n    return this.refreshPromise;\n  }\n\n  /** Return blocked-row membership and authority from one index snapshot. */\n  async check(\n    content: string,\n    category: string,\n    sourceConnector?: string\n  ): Promise<{ has: boolean; authoritative: boolean }> {\n    const key = buildExplicitCaptureDedupKey(content, category, sourceConnector);\n    let index = await this.getIndex();\n    if ((await this.hasRebuildRequired()) || !(await index.isDiskFingerprintCurrent())) {\n      index = await this.reload();\n    }\n    return { has: index.has(key), authoritative: this.authoritative };\n  }\n\n  /** Return whether a blocked row matches this explicit-capture identity. */\n  async has(content: string, category: string, sourceConnector?: string): Promise<boolean> {\n    return (await this.check(content, category, sourceConnector)).has;\n  }\n\n  /** Return whether the in-memory index is safe to answer an authoritative miss. */\n  async isAuthoritative(): Promise<boolean> {\n    const index = await this.getIndex();\n    if ((await this.hasRebuildRequired()) || !(await index.isDiskFingerprintCurrent())) {\n      await this.reload();\n    }\n    return this.authoritative;\n  }\n\n  /** Reserve durable rebuild intent before a blocked memory file is committed. */\n  async prepareWrite(): Promise<string> {\n    return this.markRebuildRequired();\n  }\n\n  /** Mark a prepared write committed once its memory file is durable. */\n  async commitWrite(rebuildMarker: string): Promise<void> {\n    await this.markRebuildCommitted(rebuildMarker);\n  }\n\n  /** Drop a pending marker when the protected memory write never commits. */\n  async discardWrite(rebuildMarker: string): Promise<void> {\n    await this.clearRebuildRequired([rebuildMarker]);\n  }\n\n  /** Add a newly persisted blocked row to the durable targeted index. */\n  async add(memory: MemoryFile, rebuildMarker?: string): Promise<void> {\n    if (!this.isBlocked(memory)) return;\n    let index = await this.getIndex();\n    if (\n      (await this.hasRebuildRequired(rebuildMarker ? [rebuildMarker] : [])) ||\n      !(await index.isDiskFingerprintCurrent())\n    ) {\n      index = await this.reload();\n    }\n    index.add(\n      buildExplicitCaptureDedupKey(memory.content, memory.frontmatter.category, memory.frontmatter.sourceConnector)\n    );\n    const marker = rebuildMarker ?? (await this.markRebuildRequired(true));\n    if (rebuildMarker) await this.markRebuildCommitted(rebuildMarker);\n    await index.saveMergingWithDisk();\n    await index.flushReconcileRetry();\n    if (index.hasPendingChanges) {\n      this.markUntrusted();\n      return;\n    }\n    await this.clearRebuildRequired([marker]);\n    await this.setAuthoritative(true);\n  }\n\n  /** Rebuild the index after a blocked row changes or is removed. */\n  async rebuildIfLoaded(ownedMarker?: string): Promise<void> {\n    const index = this.index ?? ((await this.hasPersistedIndexOrMarkers()) ? this.getIndex() : null);\n    if (!index) return;\n    const rebuildMarkers = await this.getRebuildMarkers();\n    const rebuildMarker = await this.markRebuildRequired(true);\n    const clearableRebuildMarkers = await this.getClearableRebuildMarkerPaths(rebuildMarkers);\n    const rebuilt = await this.rebuild(await index);\n    if (rebuilt) {\n      await this.clearRebuildRequired([\n        ...clearableRebuildMarkers,\n        ...(ownedMarker === undefined || clearableRebuildMarkers.includes(ownedMarker) ? [] : [ownedMarker]),\n        rebuildMarker,\n      ]);\n    }\n    await this.setAuthoritative(rebuilt);\n  }\n\n  /** Rebuild when either side of a write is blocked and its identity changed. */\n  async sync(before: MemoryFile, after: MemoryFile, rebuildMarker?: string): Promise<void> {\n    const beforeBlocked = this.isBlocked(before);\n    const afterBlocked = this.isBlocked(after);\n    if (!beforeBlocked && !afterBlocked) return;\n    const beforeKey = buildExplicitCaptureDedupKey(\n      before.content,\n      before.frontmatter.category,\n      before.frontmatter.sourceConnector\n    );\n    const afterKey = buildExplicitCaptureDedupKey(\n      after.content,\n      after.frontmatter.category,\n      after.frontmatter.sourceConnector\n    );\n    if (beforeBlocked && afterBlocked && beforeKey === afterKey) {\n      if (rebuildMarker) {\n        await this.markRebuildCommitted(rebuildMarker);\n        await this.clearRebuildRequired([rebuildMarker]);\n      }\n      return;\n    }\n    const existingMarkers = await this.getRebuildMarkers();\n    const marker = rebuildMarker ?? (await this.markRebuildRequired(true));\n    const clearableExistingMarkers = await this.getClearableRebuildMarkerPaths(existingMarkers);\n    if (rebuildMarker) await this.markRebuildCommitted(rebuildMarker);\n    const rebuilt = await this.rebuild(await this.getIndex());\n    if (rebuilt) {\n      await this.clearRebuildRequired([\n        ...clearableExistingMarkers,\n        marker,\n      ]);\n    }\n    await this.setAuthoritative(rebuilt);\n  }\n  markUntrusted(): void {\n    this.authoritative = false;\n  }\n\n  private async failOpen(operation: string, action: () => Promise<void>): Promise<void> {\n    try {\n      await action();\n    } catch (err) {\n      this.markUntrusted();\n      log.warn(`storage.${operation} completed but failed to update tombstone-blocked capture index: ${err}`);\n    }\n  }\n\n  async addWrittenMemory(\n    pathname: string,\n    frontmatter: MemoryFrontmatter,\n    content: string,\n    rebuildMarker?: string\n  ): Promise<void> {\n    await this.failOpen(\"writeMemory\", () => this.add({ path: pathname, frontmatter, content }, rebuildMarker));\n  }\n\n  async rebuildAfterInvalidation(ownedMarker?: string): Promise<void> {\n    await this.failOpen(\"invalidateMemory\", () => this.rebuildIfLoaded(ownedMarker));\n  }\n\n  async syncUpdatedMemory(\n    before: MemoryFile,\n    frontmatter: MemoryFrontmatter,\n    content: string,\n    rebuildMarker?: string\n  ): Promise<void> {\n    await this.failOpen(\"updateMemory\", () => this.sync(before, { ...before, frontmatter, content }, rebuildMarker));\n  }\n\n  async syncUpdatedFrontmatter(\n    before: MemoryFile,\n    frontmatter: MemoryFrontmatter,\n    rebuildMarker?: string\n  ): Promise<void> {\n    await this.failOpen(\"writeMemoryFrontmatter\", () => this.sync(before, { ...before, frontmatter }, rebuildMarker));\n  }\n  shouldRebuildAfterInvalidationForPath(filePath: string): boolean {\n    const relative = path.relative(path.resolve(this.options.memoryDir), path.resolve(filePath));\n    const category = relative.split(path.sep)[0];\n    return category === \"cold\" || RECALL_FALLBACK_DIRS.includes(category);\n  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package/dist/chunk-L2DPF4DF.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/graph.ts"],"sourcesContent":["/**\n * Multi-Graph Memory (MAGMA/SYNAPSE-inspired, v8.2)\n *\n * Maintains three typed edge graphs:\n *   entity.jsonl  — memories sharing a named entity (entityRef)\n *   time.jsonl    — consecutive memories in the same thread/session\n *   causal.jsonl  — memories linked by causal language heuristics\n *\n * Stored under `<memoryDir>/state/graphs/`.\n * All writes are fail-open: errors are caught/logged, never thrown.\n */\n\nimport { appendFile, mkdir, readFile, stat } from \"node:fs/promises\";\nimport * as path from \"node:path\";\n\nimport { readEdgeConfidence } from \"./graph-edge-reinforcement.js\";\nimport { emitGraphEvent } from \"./graph-events.js\";\nimport type { GraphConstructionCapabilitySet } from \"./capabilities.js\";\n\nexport type GraphType = \"entity\" | \"time\" | \"causal\";\n\nexport interface GraphEdge {\n  from: string; // relative memory path (e.g. \"facts/2026-02-22/abc.md\")\n  to: string; // relative memory path\n  type: GraphType;\n  weight: number; // 1.0 default, decay applied during traversal\n  label: string; // entity name, threadId, or matched causal phrase\n  ts: string; // ISO timestamp of edge creation\n\n  // Issue #681 — edge confidence + reinforcement (PR 1/3: schema + primitive only).\n  // Both fields are optional so existing edges without confidence still validate.\n  // Treat a missing `confidence` as 1.0 (legacy behavior) at read sites.\n  // PR 2/3 wires the maintenance decay job; PR 3/3 weights PageRank traversal by confidence.\n  confidence?: number; // [0, 1]; missing = 1.0\n  lastReinforcedAt?: string; // ISO timestamp of most recent reinforcement\n}\n\nexport interface GraphConfig {\n  multiGraphMemoryEnabled: boolean;\n  entityGraphEnabled: boolean;\n  timeGraphEnabled: boolean;\n  causalGraphEnabled: boolean;\n  maxGraphTraversalSteps: number;\n  graphActivationDecay: number;\n  maxEntityGraphEdgesPerMemory: number;\n  graphLateralInhibitionEnabled: boolean;\n  graphLateralInhibitionBeta: number;\n  graphLateralInhibitionTopM: number;\n  /**\n   * Issue #681 PR 3/3 — minimum edge confidence required for traversal.\n   * Edges with confidence below this floor are pruned. Legacy edges\n   * (no `confidence` field) are treated as 1.0 and always pass.\n   * Range `[0, 1]`. Default 0.2.\n   */\n  graphTraversalConfidenceFloor: number;\n  /**\n   * Issue #681 PR 3/3 — number of PageRank-style refinement iterations\n   * applied on top of BFS activation. Set to 0 to disable refinement\n   * and return raw BFS scores. Default 8.\n   */\n  graphTraversalPageRankIterations: number;\n  /**\n   * Issue #1904 — incremental GraphIndex edge cache. When true (the default,\n   * and the value when omitted), a single-writer edge append is pushed into the\n   * warm edge cache in place (revalidated by file size for cross-process\n   * coherence) instead of nulling the cache and paying a full 6 MB re-read +\n   * parse on the next traversal. Set false to restore the pre-#1904\n   * null-on-every-write behavior. Optional here (unlike the required\n   * PluginConfig field parseConfig always sets) so GraphConfig can still be\n   * constructed directly with a partial config; only an explicit `false` opts\n   * out, so an omitted field keeps the incremental default.\n   */\n  graphEdgeCacheIncrementalEnabled?: boolean;\n}\n\n/** Default minimum edge confidence required for traversal (issue #681 PR 3/3). */\nexport const DEFAULT_GRAPH_TRAVERSAL_CONFIDENCE_FLOOR = 0.2;\n/** Default PageRank-style refinement iteration count (issue #681 PR 3/3). */\nexport const DEFAULT_GRAPH_TRAVERSAL_PAGERANK_ITERATIONS = 8;\n\n// Causal signal phrases — order matters (most specific first)\nexport const CAUSAL_PHRASES = [\"as a result\", \"led to\", \"because of\", \"therefore\", \"caused\", \"because\"];\n\nexport function graphsDir(memoryDir: string): string {\n  return path.join(memoryDir, \"state\", \"graphs\");\n}\n\nexport function graphFilePath(memoryDir: string, type: GraphType): string {\n  return path.join(graphsDir(memoryDir), `${type}.jsonl`);\n}\n\nexport async function ensureGraphsDir(memoryDir: string): Promise<void> {\n  await mkdir(graphsDir(memoryDir), { recursive: true });\n}\n\n// ---------------------------------------------------------------------------\n// Per-graph-file write lock (gotcha #40 promise-chain pattern).\n//\n// Both the append path (`appendEdge`) and the rewrite path used by the\n// decay maintenance job must serialize on the same lock keyed by the\n// JSONL file path. Without this, an extraction can append a new edge\n// between the decay job's read-snapshot and rewrite, silently dropping\n// the appended edge during active traffic (issue #729 / Codex P1).\n// ---------------------------------------------------------------------------\nconst graphWriteLocks = new Map<string, Promise<void>>();\n\n/**\n * Run `fn` while holding the write lock for the given graph JSONL file.\n *\n * The lock is keyed by absolute file path so concurrent writes to\n * different graph types proceed independently. The chain recovers from\n * rejection (gotcha #40) so a single I/O failure does not poison all\n * future writers, but the original error is still surfaced to the\n * caller of `withGraphWriteLock`.\n */\nexport function withGraphWriteLock<T>(filePath: string, fn: () => Promise<T>): Promise<T> {\n  const prev = graphWriteLocks.get(filePath) ?? Promise.resolve();\n  const next = prev.then(fn, fn);\n  graphWriteLocks.set(\n    filePath,\n    next.then(\n      () => undefined,\n      () => undefined\n    )\n  );\n  return next;\n}\n\nexport async function appendEdge(memoryDir: string, edge: GraphEdge): Promise<void> {\n  await ensureGraphsDir(memoryDir);\n  const filePath = graphFilePath(memoryDir, edge.type);\n  const line = `${JSON.stringify(edge)}\\n`;\n  await withGraphWriteLock(filePath, async () => {\n    await appendFile(filePath, line, \"utf8\");\n  });\n  // Emit edge-added event for SSE subscribers (issue #691 PR 5/5).\n  // Fail-open: emitGraphEvent catches listener errors so a bad SSE client\n  // can never surface into the extraction pipeline.\n  emitGraphEvent(memoryDir, \"edge-added\", {\n    source: edge.from,\n    target: edge.to,\n    kind: edge.type,\n    weight: edge.weight,\n    label: edge.label,\n    confidence: typeof edge.confidence === \"number\" ? edge.confidence : 1.0,\n  });\n}\n\nfunction isNodeError(err: unknown): err is NodeJS.ErrnoException {\n  return typeof err === \"object\" && err !== null && \"code\" in err;\n}\n\nfunction parseEdgesJsonl(raw: string, expectedType: GraphType): GraphEdge[] {\n  const edges: GraphEdge[] = [];\n  for (const line of raw.split(\"\\n\")) {\n    const trimmed = line.trim();\n    if (!trimmed) continue;\n    try {\n      const parsed = JSON.parse(trimmed) as unknown;\n      if (isValidGraphEdge(parsed, expectedType)) {\n        edges.push(parsed);\n      }\n    } catch {\n      // skip corrupt lines — fail-open for partial JSONL recovery\n    }\n  }\n  return edges;\n}\n\n/**\n * Read all edges of a given type from the JSONL file.\n * Returns [] if the file doesn't exist or any read error occurs (fail-open).\n *\n * Production traversal callers (recall/PageRank) depend on this fail-open\n * posture so a temporarily missing or unreadable graph file never blocks\n * a recall. Maintenance jobs that need to distinguish ENOENT from real\n * I/O failures must use {@link readEdgesStrict} instead.\n */\nexport async function readEdges(memoryDir: string, type: GraphType): Promise<GraphEdge[]> {\n  const filePath = graphFilePath(memoryDir, type);\n  try {\n    const raw = await readFile(filePath, \"utf8\");\n    return parseEdgesJsonl(raw, type);\n  } catch {\n    return [];\n  }\n}\n\n/**\n * Same as {@link readEdges} but only swallows `ENOENT`; all other read\n * errors (`EACCES`, `EIO`, …) are propagated. Used by the graph-edge\n * decay maintenance job so I/O outages surface as a failed run instead\n * of being silently reported as \"no edges to decay\" (issue #729 /\n * Codex P1, line 120).\n */\nexport async function readEdgesStrict(memoryDir: string, type: GraphType): Promise<GraphEdge[]> {\n  const filePath = graphFilePath(memoryDir, type);\n  try {\n    const raw = await readFile(filePath, \"utf8\");\n    return parseEdgesJsonl(raw, type);\n  } catch (err) {\n    if (isNodeError(err) && err.code === \"ENOENT\") {\n      return [];\n    }\n    throw err;\n  }\n}\n\n/**\n * Read edges from all enabled graph types.\n */\nexport async function readAllEdges(\n  memoryDir: string,\n  graphCaps: Pick<GraphConstructionCapabilitySet, \"entityGraph\" | \"timeGraph\" | \"causalGraph\">,\n): Promise<GraphEdge[]> {\n  const parts: GraphEdge[][] = await Promise.all([\n    graphCaps.entityGraph ? readEdges(memoryDir, \"entity\") : Promise.resolve([]),\n    graphCaps.timeGraph ? readEdges(memoryDir, \"time\") : Promise.resolve([]),\n    graphCaps.causalGraph ? readEdges(memoryDir, \"causal\") : Promise.resolve([]),\n  ]);\n  return parts.flat();\n}\n\nexport interface GraphHealthFileStats {\n  type: GraphType;\n  filePath: string;\n  exists: boolean;\n  totalLines: number;\n  validEdges: number;\n  corruptLines: number;\n  uniqueNodes: number;\n}\n\nexport interface GraphHealthReport {\n  generatedAt: string;\n  enabledTypes: GraphType[];\n  totals: {\n    totalLines: number;\n    validEdges: number;\n    corruptLines: number;\n    uniqueNodes: number;\n  };\n  files: GraphHealthFileStats[];\n  repairGuidance?: string[];\n}\n\nfunction isValidGraphEdge(raw: unknown, expectedType: GraphType): raw is GraphEdge {\n  if (!raw || typeof raw !== \"object\") return false;\n  const edge = raw as Record<string, unknown>;\n  return (\n    edge.type === expectedType &&\n    typeof edge.from === \"string\" &&\n    edge.from.length > 0 &&\n    typeof edge.to === \"string\" &&\n    edge.to.length > 0 &&\n    typeof edge.weight === \"number\" &&\n    Number.isFinite(edge.weight) &&\n    typeof edge.label === \"string\" &&\n    typeof edge.ts === \"string\"\n  );\n}\n\nexport async function analyzeGraphHealth(\n  memoryDir: string,\n  options?: {\n    entityGraphEnabled?: boolean;\n    timeGraphEnabled?: boolean;\n    causalGraphEnabled?: boolean;\n    includeRepairGuidance?: boolean;\n  }\n): Promise<GraphHealthReport> {\n  const enabledTypes: GraphType[] = [];\n  if (options?.entityGraphEnabled !== false) enabledTypes.push(\"entity\");\n  if (options?.timeGraphEnabled !== false) enabledTypes.push(\"time\");\n  if (options?.causalGraphEnabled !== false) enabledTypes.push(\"causal\");\n\n  const files: GraphHealthFileStats[] = [];\n  const globalNodes = new Set<string>();\n\n  for (const type of enabledTypes) {\n    const filePath = graphFilePath(memoryDir, type);\n    let exists = true;\n    let totalLines = 0;\n    let validEdges = 0;\n    let corruptLines = 0;\n    const nodes = new Set<string>();\n\n    try {\n      const raw = await readFile(filePath, \"utf8\");\n      for (const line of raw.split(\"\\n\")) {\n        const trimmed = line.trim();\n        if (!trimmed) continue;\n        totalLines += 1;\n        try {\n          const parsed = JSON.parse(trimmed) as unknown;\n          if (!isValidGraphEdge(parsed, type)) {\n            corruptLines += 1;\n            continue;\n          }\n          validEdges += 1;\n          nodes.add(parsed.from);\n          nodes.add(parsed.to);\n          globalNodes.add(parsed.from);\n          globalNodes.add(parsed.to);\n        } catch {\n          corruptLines += 1;\n        }\n      }\n    } catch {\n      exists = false;\n    }\n\n    files.push({\n      type,\n      filePath,\n      exists,\n      totalLines,\n      validEdges,\n      corruptLines,\n      uniqueNodes: nodes.size,\n    });\n  }\n\n  const totals = files.reduce(\n    (acc, item) => {\n      acc.totalLines += item.totalLines;\n      acc.validEdges += item.validEdges;\n      acc.corruptLines += item.corruptLines;\n      return acc;\n    },\n    {\n      totalLines: 0,\n      validEdges: 0,\n      corruptLines: 0,\n      uniqueNodes: globalNodes.size,\n    }\n  );\n  totals.uniqueNodes = globalNodes.size;\n\n  const report: GraphHealthReport = {\n    generatedAt: new Date().toISOString(),\n    enabledTypes,\n    totals,\n    files,\n  };\n\n  if (options?.includeRepairGuidance === true) {\n    const guidance: string[] = [];\n    if (totals.corruptLines > 0) {\n      guidance.push(\n        \"Corrupt graph lines detected: back up memory/state/graphs, then rebuild graphs from clean memory replay/extraction runs.\"\n      );\n    }\n    if (totals.validEdges === 0) {\n      guidance.push(\n        \"No valid edges detected yet: run normal extraction traffic (or replay ingestion) to seed graph files.\"\n      );\n    }\n    if (guidance.length > 0) report.repairGuidance = guidance;\n  }\n\n  return report;\n}\n\n/**\n * Detect causal signal phrases in text. Returns the first matched phrase, or null.\n */\nexport function detectCausalPhrase(text: string): string | null {\n  const lower = text.toLowerCase();\n  for (const phrase of CAUSAL_PHRASES) {\n    if (lower.includes(phrase)) return phrase;\n  }\n  return null;\n}\n\n/**\n * GraphIndex — builds and updates the three memory graphs.\n *\n * Usage (orchestrator):\n *   this.graphIndex = new GraphIndex(config.memoryDir, config);\n *\n *   // After each memory write:\n *   await this.graphIndex.onMemoryWritten(memoryPath, frontmatter, threadId, recentInThread);\n */\n/**\n * Identity of one graph JSONL file used to validate the incremental edge cache\n * (issue #1904). An absent file (ENOENT) is recorded as the all-zero sentinel\n * `{ size: 0, mtimeMs: 0, ino: 0 }` so a later peer creation (ino becomes\n * non-zero) is detected as a change.\n */\ninterface GraphFileMeta {\n  size: number;\n  mtimeMs: number;\n  ino: number;\n}\n\nexport class GraphIndex {\n  private readonly memoryDir: string;\n  private readonly cfg: GraphConfig;\n\n  // Cache for readAllEdges() result.  With 30k+ entity edges (6 MB JSONL) the\n  // file read + JSON parse takes 2-4 s per call.  This instance-level cache\n  // eliminates that overhead on every spreadingActivation() call; it is\n  // invalidated (set to null) in onMemoryWritten() so new edges appear promptly.\n  private edgeCache: {\n    allEdges: GraphEdge[];\n    loadedAt: number;\n    // Per-file identity of each enabled graph file observed at load (issue\n    // #1904). An incremental push is trusted only when every file's identity is\n    // explained entirely by OUR own append: size grows by exactly the bytes we\n    // appended and the inode is unchanged (a local append keeps the inode; an\n    // external atomic temp+rename rewrite — e.g. the edge-decay job — changes\n    // it). Untouched files must match size AND mtime AND inode exactly. This\n    // closes the size-only holes Codex flagged: a peer append racing cache\n    // construction, and an equal-length atomic rewrite (e.g. confidence\n    // 0.9->0.8) that preserves byte length. Any divergence forces a full reload.\n    meta: Partial<Record<GraphType, GraphFileMeta>>;\n  } | null = null;\n  private static readonly EDGE_CACHE_TTL_MS = 300_000; // 5 minutes\n\n  constructor(memoryDir: string, cfg: GraphConfig) {\n    this.memoryDir = memoryDir;\n    this.cfg = cfg;\n  }\n\n  /** Clear the edge cache so the next spreadingActivation() re-reads from disk.\n   *  Call after any code path that appends edges outside of onMemoryWritten(). */\n  invalidateEdgeCache(): void {\n    this.edgeCache = null;\n  }\n\n  private async loadEdgesCached(): Promise<GraphEdge[]> {\n    if (this.edgeCache && Date.now() - this.edgeCache.loadedAt < GraphIndex.EDGE_CACHE_TTL_MS) {\n      return this.edgeCache.allEdges;\n    }\n    // Consistent snapshot (issue #1904, Codex): capture file identity BEFORE and\n    // AFTER reading edges and retry if it changed, so `allEdges` and the recorded\n    // `meta` baseline reflect the SAME on-disk state. Without this a peer append\n    // landing mid-read would leave the cache holding edges that exclude the peer\n    // edge while the baseline already counts its bytes — a later local append\n    // would then pass the size-delta check and silently omit the peer edge.\n    let allEdges: GraphEdge[] = [];\n    let meta = await this.readEnabledGraphFileMeta();\n    let stable = false;\n    for (let attempt = 0; attempt < 3; attempt++) {\n      const before = meta;\n      allEdges = await readAllEdges(this.memoryDir, {\n        entityGraph: this.cfg.entityGraphEnabled,\n        timeGraph: this.cfg.timeGraphEnabled,\n        causalGraph: this.cfg.causalGraphEnabled,\n      });\n      meta = await this.readEnabledGraphFileMeta();\n      if (this.graphFileMetaEqual(before, meta)) {\n        stable = true;\n        break;\n      }\n      // A write landed during the read; the just-captured `meta` is the new\n      // baseline for the next attempt's before-snapshot.\n    }\n    if (stable) {\n      this.edgeCache = { allEdges, loadedAt: Date.now(), meta };\n    } else {\n      // Contended: a peer kept writing across every attempt, so the final\n      // allEdges/meta pair is not guaranteed consistent. Serve THIS read's edges\n      // (best effort) but do NOT poison the cache — leave it null so the next\n      // call re-reads, instead of installing a baseline that could hide a peer\n      // edge for the TTL (Codex).\n      this.edgeCache = null;\n    }\n    return allEdges;\n  }\n\n  /**\n   * Identity ({ size, mtimeMs, ino }) of each ENABLED graph file (issue #1904).\n   * Missing files (ENOENT) and any stat error map to the all-zero sentinel so\n   * the baseline is fail-open: a later revalidation sees a mismatch (or a peer\n   * creation flipping ino from 0 to non-zero) and forces a full reload rather\n   * than trusting a stale incremental push.\n   */\n  private async readEnabledGraphFileMeta(): Promise<Partial<Record<GraphType, GraphFileMeta>>> {\n    const enabled: GraphType[] = [];\n    if (this.cfg.entityGraphEnabled) enabled.push(\"entity\");\n    if (this.cfg.timeGraphEnabled) enabled.push(\"time\");\n    if (this.cfg.causalGraphEnabled) enabled.push(\"causal\");\n    const meta: Partial<Record<GraphType, GraphFileMeta>> = {};\n    for (const type of enabled) {\n      try {\n        const st = await stat(graphFilePath(this.memoryDir, type));\n        meta[type] = { size: st.size, mtimeMs: st.mtimeMs, ino: Number(st.ino) };\n      } catch {\n        meta[type] = { size: 0, mtimeMs: 0, ino: 0 };\n      }\n    }\n    return meta;\n  }\n\n  /** True iff both metadata maps carry identical identity for every key. */\n  private graphFileMetaEqual(\n    a: Partial<Record<GraphType, GraphFileMeta>>,\n    b: Partial<Record<GraphType, GraphFileMeta>>,\n  ): boolean {\n    const types: GraphType[] = [\"entity\", \"time\", \"causal\"];\n    for (const type of types) {\n      const x = a[type];\n      const y = b[type];\n      if (!x && !y) continue;\n      if (!x || !y) return false;\n      if (x.size !== y.size || x.mtimeMs !== y.mtimeMs || x.ino !== y.ino) return false;\n    }\n    return true;\n  }\n\n  /**\n   * Re-stat every graph file whose identity the cache just committed and return\n   * false if any has moved since (issue #1904, Codex). Closes the validation→\n   * in-place-push TOCTOU window: a peer process (concurrent CLI / daemon /\n   * decay job) can append between edgeFilesUnchangedExceptOurAppends()'s final\n   * stat and the allEdges.push(...). Without this re-check the cache would be\n   * accepted with identity predating the peer write and miss the peer edge for\n   * the TTL. A residual infinitesimal window (peer writes during this re-stat)\n   * remains and is TTL-bounded.\n   */\n  private async edgeCacheIdentityUnchangedSinceCommit(): Promise<boolean> {\n    if (!this.edgeCache) return false;\n    for (const type of Object.keys(this.edgeCache.meta) as GraphType[]) {\n      const committed = this.edgeCache.meta[type];\n      if (!committed) continue;\n      let cur: GraphFileMeta;\n      try {\n        const st = await stat(graphFilePath(this.memoryDir, type));\n        cur = { size: st.size, mtimeMs: st.mtimeMs, ino: Number(st.ino) };\n      } catch (err) {\n        if ((err as NodeJS.ErrnoException)?.code === \"ENOENT\") {\n          cur = { size: 0, mtimeMs: 0, ino: 0 };\n        } else {\n          return false;\n        }\n      }\n      if (\n        cur.size !== committed.size ||\n        cur.mtimeMs !== committed.mtimeMs ||\n        cur.ino !== committed.ino\n      ) {\n        return false;\n      }\n    }\n    return true;\n  }\n\n  /**\n   * Called after a memory is written to disk.\n   *\n   * @param memoryPath - relative path from memoryDir (e.g. \"facts/2026-02-22/abc.md\")\n   * @param entityRef  - entityRef frontmatter field (if any)\n   * @param content    - full memory text (for causal detection)\n   * @param created    - ISO timestamp of this memory\n   * @param threadId   - current thread ID (for time graph)\n   * @param recentInThread - paths of the N most-recent memories in this thread (for time graph)\n   * @param entitySiblings - paths of other memories that share the same entityRef (for entity graph)\n   */\n  async onMemoryWritten(opts: {\n    memoryPath: string;\n    entityRef?: string;\n    content: string;\n    created: string;\n    threadId?: string;\n    recentInThread?: string[];\n    entitySiblings?: string[];\n    causalPredecessor?: string;\n    /**\n     * Optional frozen gate overrides (from GraphConstructionCapabilitySet).\n     * When provided, these take precedence over `this.cfg` so the caller's\n     * operation-scoped snapshot is the single source of truth (#1566).\n     */\n    graphCapsOverride?: {\n      entityGraph: boolean;\n      timeGraph: boolean;\n      causalGraph: boolean;\n      multiGraphMemory: boolean;\n    };\n  }): Promise<void> {\n    const g = opts.graphCapsOverride;\n    const multiGraphOn = g ? g.multiGraphMemory : this.cfg.multiGraphMemoryEnabled;\n    if (!multiGraphOn) return;\n    const entityOn = g ? g.entityGraph : this.cfg.entityGraphEnabled;\n    const timeOn = g ? g.timeGraph : this.cfg.timeGraphEnabled;\n    const causalOn = g ? g.causalGraph : this.cfg.causalGraphEnabled;\n    const ts = new Date().toISOString();\n    // Collect the edges appended this call so a coherent single-writer push can\n    // extend the warm edge cache in place instead of nulling it (issue #1904).\n    const appended: GraphEdge[] = [];\n\n    try {\n      // Entity graph\n      if (entityOn && opts.entityRef && opts.entitySiblings?.length) {\n        const siblings = opts.entitySiblings.slice(0, this.cfg.maxEntityGraphEdgesPerMemory);\n        for (const sibling of siblings) {\n          const edge: GraphEdge = {\n            from: opts.memoryPath,\n            to: sibling,\n            type: \"entity\",\n            weight: 1.0,\n            label: opts.entityRef,\n            ts,\n          };\n          appended.push(edge);\n          await appendEdge(this.memoryDir, edge);\n        }\n      }\n\n      // Time graph — link to most recent memory in same thread\n      if (timeOn && opts.threadId && opts.recentInThread?.length) {\n        const predecessor = opts.recentInThread[opts.recentInThread.length - 1];\n        if (predecessor && predecessor !== opts.memoryPath) {\n          const edge: GraphEdge = {\n            from: predecessor,\n            to: opts.memoryPath,\n            type: \"time\",\n            weight: 1.0,\n            label: opts.threadId,\n            ts,\n          };\n          appended.push(edge);\n          await appendEdge(this.memoryDir, edge);\n        }\n      }\n\n      // Causal graph\n      if (causalOn && opts.causalPredecessor) {\n        const phrase = detectCausalPhrase(opts.content);\n        if (phrase) {\n          const edge: GraphEdge = {\n            from: opts.causalPredecessor,\n            to: opts.memoryPath,\n            type: \"causal\",\n            weight: 1.0,\n            label: phrase,\n            ts,\n          };\n          appended.push(edge);\n          await appendEdge(this.memoryDir, edge);\n        }\n      }\n    } catch (err) {\n      // Fail-open: graph write errors must never surface to caller\n      const { log } = await import(\"./logger.js\");\n      log.warn(`[graph] onMemoryWritten error: ${err}`);\n    } finally {\n      // Edge-cache coherence (issue #1904). Legacy behavior nulled the cache on\n      // every write, paying a 2-4 s full re-read + parse on the next traversal.\n      if (!this.edgeCache || Date.now() - this.edgeCache.loadedAt >= GraphIndex.EDGE_CACHE_TTL_MS) {\n        // Nothing warm, or the entry is past its 5-min TTL backstop — reload.\n        this.edgeCache = null;\n      } else if (this.cfg.graphEdgeCacheIncrementalEnabled === false) {\n        // Rollback lever: restore the pre-#1904 null-on-every-write behavior.\n        this.edgeCache = null;\n      } else {\n        // Trust an in-place push ONLY when WE are the sole writer since load:\n        // every enabled graph file's on-disk size must equal our baseline plus\n        // exactly the bytes we appended to it. A divergence means a peer process\n        // (backup daemon / CLI / decay job) also wrote — force a full reload for\n        // cross-process coherence. Any stat error fails open to a full reload.\n        try {\n          if (await this.edgeFilesUnchangedExceptOurAppends(appended)) {\n            if (appended.length > 0) {\n              this.edgeCache.allEdges.push(...appended);\n              // Close the validation→push TOCTOU window (#1904, Codex): a peer\n              // process can append between the validation stat above and this\n              // in-place push. Re-verify every committed identity; if any file\n              // moved, the cache would miss the peer edge for the TTL, so null\n              // it and let the next traversal reload. (Skipped when this call\n              // pushed nothing — no new window was opened, and the validation\n              // already confirmed no peer wrote.)\n              if (this.edgeCache && !(await this.edgeCacheIdentityUnchangedSinceCommit())) {\n                this.edgeCache = null;\n              }\n            }\n          } else {\n            this.edgeCache = null;\n          }\n        } catch {\n          this.edgeCache = null;\n        }\n      }\n    }\n  }\n\n  /**\n   * Cross-process coherence check for the incremental edge cache (issue #1904).\n   *\n   * Returns true iff every ENABLED graph file's current identity is explained\n   * ENTIRELY by THIS call's own append — no other process wrote to any graph\n   * file since load. Per file:\n   *   - inode must be unchanged. A local append (`appendFile`) keeps the inode;\n   *     an external atomic temp+rename rewrite (e.g. the edge-decay job) changes\n   *     it, so an inode change — even one that preserves byte length, such as\n   *     decaying confidence 0.9->0.8 — forces a reload (Codex).\n   *   - a file WE appended to (delta > 0): size must equal baseline + our exact\n   *     appended bytes. If it was absent at load (sentinel ino 0), our append\n   *     created it, so we accept size === delta and adopt the new identity.\n   *   - a file we did NOT touch (delta 0): size AND mtime must be unchanged, so\n   *     an in-place equal-length rewrite (mtime bump) or a peer append (size\n   *     bump) both force a reload.\n   * On success it commits the new identity baseline so the next append\n   * revalidates against post-this-write truth. Fail-open: an unreadable file\n   * (non-ENOENT) returns false, forcing a full reload.\n   */\n  private async edgeFilesUnchangedExceptOurAppends(appended: GraphEdge[]): Promise<boolean> {\n    if (!this.edgeCache) return false;\n    const expectedDelta: Partial<Record<GraphType, number>> = {};\n    for (const edge of appended) {\n      const bytes = Buffer.byteLength(`${JSON.stringify(edge)}\\n`, \"utf8\");\n      expectedDelta[edge.type] = (expectedDelta[edge.type] ?? 0) + bytes;\n    }\n    const enabled: GraphType[] = [];\n    if (this.cfg.entityGraphEnabled) enabled.push(\"entity\");\n    if (this.cfg.timeGraphEnabled) enabled.push(\"time\");\n    if (this.cfg.causalGraphEnabled) enabled.push(\"causal\");\n    const observed: Partial<Record<GraphType, GraphFileMeta>> = {};\n    for (const type of enabled) {\n      let cur: GraphFileMeta;\n      try {\n        const st = await stat(graphFilePath(this.memoryDir, type));\n        cur = { size: st.size, mtimeMs: st.mtimeMs, ino: Number(st.ino) };\n      } catch (err) {\n        // An absent graph file (ENOENT) is the normal partially-populated state\n        // (e.g. entity edges written before any causal edge): treat it as the\n        // all-zero sentinel so the incremental cache stays warm. Only a genuine\n        // stat failure forces a full reload (#1904, Codex).\n        if ((err as NodeJS.ErrnoException)?.code === \"ENOENT\") {\n          cur = { size: 0, mtimeMs: 0, ino: 0 };\n        } else {\n          return false;\n        }\n      }\n      const base = this.edgeCache.meta[type] ?? { size: 0, mtimeMs: 0, ino: 0 };\n      const delta = expectedDelta[type] ?? 0;\n      if (delta > 0) {\n        if (base.ino === 0) {\n          // File was absent at load; our append created it. Accept iff its whole\n          // size is exactly our appended bytes (nothing else wrote it).\n          if (cur.ino === 0 || cur.size !== delta) return false;\n        } else {\n          // Existing file: our append keeps the inode and grows size by exactly\n          // our bytes. An atomic rewrite (ino change) or a peer append (size\n          // mismatch) both fail here.\n          if (cur.ino !== base.ino || cur.size !== base.size + delta) return false;\n        }\n      } else {\n        // Untouched file: identity must be byte-for-byte unchanged.\n        if (cur.ino !== base.ino || cur.size !== base.size || cur.mtimeMs !== base.mtimeMs) {\n          return false;\n        }\n      }\n      observed[type] = cur;\n    }\n    this.edgeCache.meta = observed;\n    return true;\n  }\n\n  /**\n   * Spreading activation BFS (SYNAPSE-inspired).\n   *\n   * Starting from `seeds`, traverse the combined graph for up to `maxSteps` hops.\n   * Each candidate gets an activation score = edge.weight × edgeConfidence × decay^hop.\n   *\n   * Issue #681 PR 3/3 — confidence-aware traversal:\n   *   - Each edge's `weight` is multiplied by its `confidence` (legacy edges\n   *     missing `confidence` are treated as 1.0, preserving prior behavior).\n   *   - Edges with `confidence < graphTraversalConfidenceFloor` are pruned and\n   *     contribute neither activation nor downstream neighbors.\n   *   - When `graphTraversalPageRankIterations > 0`, an additional PageRank-\n   *     style refinement pass redistributes activation along confidence-weighted\n   *     edges, sharpening the ranking among multi-hop candidates.\n   *   - Per-result provenance includes the highest-confidence edge that landed\n   *     on each candidate, so the X-ray surface can attribute pruning and\n   *     ranking decisions back to specific edges.\n   *\n   * @param seeds    - initial memory paths to expand from (e.g. QMD top results)\n   * @param maxSteps - max BFS hops (from config: maxGraphTraversalSteps)\n   * @returns Array of {path, score, edgeConfidence, ...} sorted descending, not including seed paths\n   */\n  async spreadingActivation(\n    seeds: string[],\n    maxSteps?: number,\n    opts?: {\n      /**\n       * Issue #681 — when `true`, bypasses the configured\n       * `graphTraversalConfidenceFloor` and includes low-confidence\n       * edges in traversal.  Equivalent to forcing the floor to `0`.\n       * Default `false` (floor from config is applied).\n       */\n      includeLowConfidence?: boolean;\n      /** Absolute deadline in ms-since-epoch for post-retrieval assembly. */\n      deadlineAtMs?: number;\n    }\n  ): Promise<\n    Array<{\n      path: string;\n      score: number;\n      seed: string;\n      hopDepth: number;\n      decayedWeight: number;\n      graphType: \"entity\" | \"time\" | \"causal\";\n      /**\n       * Confidence of the edge that produced this candidate's recorded\n       * provenance (the strongest edge along the chosen entry path).\n       * In `[0, 1]`. Legacy edges without `confidence` surface as 1.0.\n       */\n      edgeConfidence: number;\n    }>\n  > {\n    if (!this.cfg.multiGraphMemoryEnabled) return [];\n    const steps = maxSteps ?? this.cfg.maxGraphTraversalSteps;\n    const decay = this.cfg.graphActivationDecay;\n    // When `includeLowConfidence` is set, use floor=0 so all edges\n    // participate in traversal regardless of their decay state.\n    // Otherwise clamp the configured floor into [0, 1] so misconfiguration\n    // cannot (a) admit edges with negative confidence or (b) reject every\n    // edge.\n    const floor =\n      opts?.includeLowConfidence === true ? 0 : clampConfidenceFloor(this.cfg.graphTraversalConfidenceFloor);\n    const iterations = clampPageRankIterations(this.cfg.graphTraversalPageRankIterations);\n    const deadlineAtMs = opts?.deadlineAtMs;\n    const deadlineExpired = (): boolean =>\n      typeof deadlineAtMs === \"number\" && Date.now() >= deadlineAtMs;\n\n    try {\n      if (deadlineExpired()) return [];\n      const allEdges = await this.loadEdgesCached();\n      if (deadlineExpired()) return [];\n\n      // Build adjacency index: from → edges, to → edges (bidirectional for entity/time, directional for causal).\n      // Edges below the confidence floor are pruned at index time so neither\n      // direct activation nor downstream BFS expansion can re-introduce them.\n      const adj = new Map<string, GraphEdge[]>();\n      for (let i = 0; i < allEdges.length; i += 1) {\n        if ((i & 1023) === 0 && deadlineExpired()) return [];\n        const edge = allEdges[i];\n        const conf = readEdgeConfidence(edge);\n        if (conf < floor) continue;\n        if (!adj.has(edge.from)) adj.set(edge.from, []);\n        adj.get(edge.from)!.push(edge);\n        // Entity and time edges are bidirectional\n        if (edge.type !== \"causal\") {\n          if (!adj.has(edge.to)) adj.set(edge.to, []);\n          adj.get(edge.to)!.push({ ...edge, from: edge.to, to: edge.from });\n        }\n      }\n\n      const seedSet = new Set(seeds);\n      const scores = new Map<string, number>(); // candidate path → accumulated activation score\n      const provenance = new Map<\n        string,\n        {\n          seed: string;\n          hopDepth: number;\n          decayedWeight: number;\n          graphType: \"entity\" | \"time\" | \"causal\";\n          edgeConfidence: number;\n        }\n      >();\n      let frontier = new Map<string, { node: string; seed: string; activation: number }>();\n      const reachedBySeed = new Map<string, Set<string>>();\n      for (const seed of seeds) {\n        frontier.set(`${seed}\\0${seed}`, { node: seed, seed, activation: 1 });\n        reachedBySeed.set(seed, new Set([seed]));\n      }\n      const finalizeScores = () =>\n        Array.from(scores.entries())\n          .map(([p, score]) => ({\n            path: p,\n            score,\n            seed: provenance.get(p)?.seed ?? \"\",\n            hopDepth: provenance.get(p)?.hopDepth ?? 0,\n            decayedWeight: provenance.get(p)?.decayedWeight ?? 0,\n            graphType: provenance.get(p)?.graphType ?? \"entity\",\n            edgeConfidence: provenance.get(p)?.edgeConfidence ?? 1,\n          }))\n          .sort((a, b) => b.score - a.score);\n\n      for (let hop = 0; hop < steps && frontier.size > 0; hop++) {\n        if (deadlineExpired()) return finalizeScores();\n        const nextFrontier = new Map<string, { node: string; seed: string; activation: number }>();\n\n        for (const { node, seed: sourceSeed, activation } of frontier.values()) {\n          const edges = adj.get(node) ?? [];\n          for (let i = 0; i < edges.length; i += 1) {\n            if ((i & 1023) === 0 && deadlineExpired()) return finalizeScores();\n            const edge = edges[i];\n            const neighbor = edge.to === node ? edge.from : edge.to;\n            const conf = readEdgeConfidence(edge);\n            // Defense in depth: the adjacency build already drops sub-floor\n            // edges, but if a synthesized reverse edge ever bypassed that\n            // path, this guard keeps spreading activation honest.\n            if (conf < floor) continue;\n            const score = activation * edge.weight * conf * decay;\n            const reachedForSeed = reachedBySeed.get(sourceSeed);\n            if (reachedForSeed?.has(neighbor)) {\n              continue;\n            }\n\n            if (!seedSet.has(neighbor)) {\n              const existing = scores.get(neighbor) ?? 0;\n              scores.set(neighbor, existing + score);\n\n              const prev = provenance.get(neighbor);\n              if (!prev || hop + 1 < prev.hopDepth || (hop + 1 === prev.hopDepth && score > prev.decayedWeight)) {\n                provenance.set(neighbor, {\n                  seed: sourceSeed,\n                  hopDepth: hop + 1,\n                  decayedWeight: score,\n                  graphType: edge.type,\n                  edgeConfidence: conf,\n                });\n              }\n\n              if (hop + 1 < steps) {\n                const frontierKey = `${sourceSeed}\\0${neighbor}`;\n                const existingFrontier = nextFrontier.get(frontierKey);\n                if (existingFrontier) {\n                  existingFrontier.activation += score;\n                } else {\n                  nextFrontier.set(frontierKey, {\n                    node: neighbor,\n                    seed: sourceSeed,\n                    activation: score,\n                  });\n                }\n              }\n            }\n          }\n        }\n\n        for (const { node, seed } of nextFrontier.values()) {\n          reachedBySeed.get(seed)?.add(node);\n        }\n        frontier = nextFrontier;\n      }\n\n      // Issue #681 PR 3/3 — optional PageRank-style refinement.\n      // Redistributes a node's accumulated activation along its outgoing\n      // edges, weighted by edge confidence. Damping is fixed at the\n      // canonical 0.85 so the ranking stays comparable across queries;\n      // the `iterations` knob bounds compute, not behavior shape.\n      if (!deadlineExpired() && iterations > 0 && scores.size > 1) {\n        applyPageRankRefinement(scores, adj, {\n          iterations,\n          floor,\n          damping: 0.85,\n          deadlineAtMs,\n        });\n      }\n\n      // Apply lateral inhibition if enabled (Synapse-inspired competitive suppression)\n      if (deadlineExpired()) return finalizeScores();\n      if (this.cfg.graphLateralInhibitionEnabled && scores.size > 1) {\n        const inhibited = applyLateralInhibition(scores, {\n          beta: this.cfg.graphLateralInhibitionBeta,\n          topM: this.cfg.graphLateralInhibitionTopM,\n        });\n        for (const [k, v] of inhibited) {\n          scores.set(k, v);\n        }\n      }\n\n      return finalizeScores();\n    } catch (err) {\n      const { log } = await import(\"./logger.js\");\n      log.warn(`[graph] spreadingActivation error: ${err}`);\n      return [];\n    }\n  }\n}\n\n/**\n * Clamp `graphTraversalConfidenceFloor` into the legal range `[0, 1]`.\n * Non-finite or non-numeric values fall back to the documented default\n * so misconfiguration cannot silently disable the floor or reject every edge.\n *\n * Exported for tests; call sites in `spreadingActivation` use it to make\n * the contract explicit at every boundary.\n */\nexport function clampConfidenceFloor(raw: unknown): number {\n  if (typeof raw !== \"number\" || !Number.isFinite(raw)) {\n    return DEFAULT_GRAPH_TRAVERSAL_CONFIDENCE_FLOOR;\n  }\n  if (raw < 0) return 0;\n  if (raw > 1) return 1;\n  return raw;\n}\n\n/**\n * Clamp `graphTraversalPageRankIterations` into a non-negative integer.\n * Negative or non-finite values fall back to 0 (disable refinement) so\n * misconfiguration cannot stall recall in an unbounded loop.\n */\nexport function clampPageRankIterations(raw: unknown): number {\n  if (typeof raw !== \"number\" || !Number.isFinite(raw)) return 0;\n  if (raw <= 0) return 0;\n  return Math.floor(raw);\n}\n\n/**\n * PageRank-style refinement on top of the BFS activation map.\n *\n * Each iteration redistributes a fraction of every node's score along\n * its outgoing edges, scaled by edge confidence. Confidence below\n * `floor` is filtered out before redistribution, mirroring the BFS\n * pruning rule. Mutates `scores` in place.\n *\n * Exported for tests; in production, call sites pass the same adjacency\n * map already used by BFS so behavior stays consistent.\n */\nexport function applyPageRankRefinement(\n  scores: Map<string, number>,\n  adj: Map<string, GraphEdge[]>,\n  opts: { iterations: number; floor: number; damping: number; deadlineAtMs?: number }\n): void {\n  const { iterations, floor, damping, deadlineAtMs } = opts;\n  if (iterations <= 0 || scores.size === 0) return;\n  const safeDamping = Math.min(1, Math.max(0, damping));\n  const deadlineExpired = (): boolean =>\n    typeof deadlineAtMs === \"number\" && Date.now() >= deadlineAtMs;\n\n  // Pre-compute confidence-weighted out-edge totals for normalization.\n  // Done once per refinement, not per iteration, since adjacency is\n  // immutable inside the loop.\n  //\n  // Codex P1 (#735): the denominator MUST be computed over the same\n  // eligible-neighbor set the iteration redistributes into — i.e.\n  // edges whose neighbor is in `scores`. Counting edges-to-seeds (or\n  // edges-to-unseen-nodes) in the denominator while dropping their\n  // flow during iteration leaks `safeDamping × score` every pass and\n  // collapses leaf candidates' scores instead of just re-ranking them.\n  const eligible = (edge: GraphEdge, fromNode: string): boolean => {\n    if (readEdgeConfidence(edge) < floor) return false;\n    const neighbor = edge.to === fromNode ? edge.from : edge.to;\n    return scores.has(neighbor);\n  };\n  const outboundTotal = new Map<string, number>();\n  for (const [node, edges] of adj.entries()) {\n    if (deadlineExpired()) return;\n    if (!scores.has(node)) continue; // only candidate nodes redistribute\n    let sum = 0;\n    for (const edge of edges) {\n      if (!eligible(edge, node)) continue;\n      sum += readEdgeConfidence(edge) * edge.weight;\n    }\n    if (sum > 0) outboundTotal.set(node, sum);\n  }\n\n  for (let i = 0; i < iterations; i += 1) {\n    if (deadlineExpired()) return;\n    const next = new Map<string, number>();\n    // Teleport / damping floor: every node retains `(1 - damping) * score`\n    // of its current activation so dangling nodes do not bleed to zero.\n    for (const [node, score] of scores) {\n      next.set(node, (1 - safeDamping) * score);\n    }\n    for (const [node, score] of scores) {\n      const outEdges = adj.get(node);\n      const total = outboundTotal.get(node);\n      // Dangling-node fallback: when a candidate has zero eligible\n      // outflow (no in-scores neighbors above the floor), the\n      // `safeDamping × score` portion would otherwise evaporate. Keep\n      // it on `node` so total mass is conserved and the score reflects\n      // the candidate's standing rather than its in-degree topology.\n      if (!outEdges || outEdges.length === 0 || !total || total <= 0) {\n        next.set(node, (next.get(node) ?? 0) + safeDamping * score);\n        continue;\n      }\n      for (let edgeIndex = 0; edgeIndex < outEdges.length; edgeIndex += 1) {\n        if ((edgeIndex & 1023) === 0 && deadlineExpired()) return;\n        const edge = outEdges[edgeIndex];\n        if (!eligible(edge, node)) continue;\n        const conf = readEdgeConfidence(edge);\n        const neighbor = edge.to === node ? edge.from : edge.to;\n        const flow = safeDamping * score * ((conf * edge.weight) / total);\n        next.set(neighbor, (next.get(neighbor) ?? 0) + flow);\n      }\n    }\n    for (const [node, score] of next) {\n      scores.set(node, score);\n    }\n  }\n}\n\n/**\n * Lateral inhibition (Synapse-inspired).\n *\n * For each node, the top-M higher-activation competitors exert inhibition\n * proportional to their activation difference. Output is clamped to [0, ∞).\n *\n * No sigmoid is applied here — downstream `normalizeGraphActivationScore`\n * already applies x/(1+x) soft squash, so adding a sigmoid would double-\n * normalize and cap graph influence at ~50%.\n *\n * Formula: u_hat_i = max(0, u_i - beta * sum_{k in top-M where u_k > u_i}(u_k - u_i))\n *\n * When beta=0 or topM=0, returns original scores unchanged (no-op).\n */\nexport function applyLateralInhibition(\n  scores: Map<string, number>,\n  opts: { beta: number; topM: number }\n): Map<string, number> {\n  const { beta, topM } = opts;\n  if (beta === 0 || topM === 0) return new Map(scores);\n\n  const sorted = Array.from(scores.entries()).sort((a, b) => b[1] - a[1]);\n  const topCompetitors = sorted.slice(0, topM);\n\n  const result = new Map<string, number>();\n  for (const [node, u] of scores) {\n    let inhibition = 0;\n    for (const [, uK] of topCompetitors) {\n      if (uK > u) {\n        inhibition += uK - u;\n      }\n    }\n    result.set(node, Math.max(0, u - beta * inhibition));\n  }\n\n  return 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