@remnic/core 9.3.677 → 9.3.679

package/src/orchestrator.ts

@@ -245,7 +245,12 @@ import {
   type TrustZoneSearchResult,
 } from "./trust-zones.js";
 import { tryDirectAnswer, type DirectAnswerSources } from "./direct-answer-wiring.js";
-import { resolveCapabilities, type CapabilitySet } from "./capabilities.js";
+import {
+  resolveCapabilities,
+  resolveGraphConstructionCapabilities,
+  type CapabilitySet,
+  type GraphConstructionCapabilitySet,
+} from "./capabilities.js";
 import { DEFAULT_TAXONOMY } from "./taxonomy/index.js";
 import {
   searchHarmonicRetrieval,
@@ -5756,6 +5761,7 @@ export class Orchestrator {
     // entry, and thread the frozen set down (issue #1523). Never re-read the
     // migrated flags off `this.config` mid-operation.
     const caps = resolveCapabilities(this.config);
+    const graphCaps = resolveGraphConstructionCapabilities(this.config); // #1566 Cluster A
     const abortController = new AbortController();
     const onAbort = () => {
       abortController.abort();
@@ -5832,7 +5838,7 @@ export class Orchestrator {
       const recallPromise = this.recallInternal(prompt, sessionKey, {
         ...options,
         abortSignal: abortController.signal,
-      }, caps);
+      }, caps, graphCaps);
       const RECALL_TIMEOUT_MS = this.config.recallOuterTimeoutMs ?? 75_000;
       if (RECALL_TIMEOUT_MS <= 0) {
         return await recallPromise;
@@ -7279,6 +7285,7 @@ export class Orchestrator {
     sessionKey?: string,
     options: RecallInvocationOptions = {},
     caps: CapabilitySet = resolveCapabilities(this.config),
+    graphCaps: GraphConstructionCapabilitySet = resolveGraphConstructionCapabilities(this.config),
   ): Promise<string> {
     const recallStart = Date.now();
     // Backend degradations observed by this recall's QMD searches (#1536):
@@ -7440,7 +7447,7 @@ export class Orchestrator {
     const recallModeDecisionOptions = {
       plannerEnabled: caps.recallPlanner,
       graphRecallEnabled: caps.graphRecall,
-      multiGraphMemoryEnabled: this.config.multiGraphMemoryEnabled,
+      multiGraphMemoryEnabled: graphCaps.multiGraphMemory,
       graphExpandedIntentEnabled: caps.graphExpandedIntent,
       prompt,
     };
@@ -7678,7 +7685,7 @@ export class Orchestrator {
         shadowMode: graphDecisionShadowMode,
         qmdAvailable,
         graphRecallEnabled: caps.graphRecall,
-        multiGraphMemoryEnabled: this.config.multiGraphMemoryEnabled,
+        multiGraphMemoryEnabled: graphCaps.multiGraphMemory,
       },
     });
 
@@ -10898,7 +10905,7 @@ export class Orchestrator {
       );
 
       const isFullModeGraphAssist =
-        this.config.multiGraphMemoryEnabled &&
+        graphCaps.multiGraphMemory &&
         caps.graphAssistInFullMode &&
         recallMode === "full" &&
         memoryResults.length >=
@@ -11321,6 +11328,7 @@ export class Orchestrator {
             recallResultLimit,
             recallMode,
             caps,
+            graphCaps,
             queryAwarePrefilter,
             abortSignal: options.abortSignal,
             onDegradation: (degradation) => {
@@ -11548,6 +11556,7 @@ export class Orchestrator {
               recallResultLimit,
               recallMode,
               caps,
+              graphCaps,
               queryAwarePrefilter,
               abortSignal: options.abortSignal,
               onDegradation: (degradation) => {
@@ -11662,6 +11671,7 @@ export class Orchestrator {
                 recallResultLimit,
                 recallMode,
                 caps,
+                graphCaps,
                 queryAwarePrefilter,
                 abortSignal: options.abortSignal,
                 onDegradation: (degradation) => {
@@ -11710,6 +11720,7 @@ export class Orchestrator {
             recallResultLimit,
             recallMode,
             caps,
+            graphCaps,
             queryAwarePrefilter,
             abortSignal: options.abortSignal,
             onDegradation: (degradation) => {
@@ -13926,6 +13937,7 @@ export class Orchestrator {
     sourceContext?: { sessionKey?: string; principal?: string; validAt?: string },
     baseNamespace?: string,
     scopeProfileWritePlan?: ResolvedScopeProfilePlan | null,
+    graphCaps: GraphConstructionCapabilitySet = resolveGraphConstructionCapabilities(this.config),
   ): Promise<string[]> {
     // Inline source attribution (issue #369). When enabled, every extracted
     // fact is rewritten to carry a compact provenance tag inside its body so
@@ -14587,7 +14599,7 @@ export class Orchestrator {
         allMemsForGraph: null,
         memoryPathById: new Map<string, string>(),
       };
-      if (this.config.multiGraphMemoryEnabled) {
+      if (graphCaps.multiGraphMemory) {
         try {
           created.allMemsForGraph = await targetStorage.readAllMemories();
           for (const [id, relPath] of buildMemoryPathById(
@@ -14604,7 +14616,7 @@ export class Orchestrator {
       return created;
     };
     let threadEpisodeIdsForGraph: string[] | undefined;
-    if (this.config.multiGraphMemoryEnabled && threadIdForExtraction) {
+    if (graphCaps.multiGraphMemory && threadIdForExtraction) {
       try {
         const thread = await this.threading.loadThread(threadIdForExtraction);
         threadEpisodeIdsForGraph = thread?.episodeIds
@@ -15444,7 +15456,7 @@ export class Orchestrator {
               });
             }
             // v8.2: graph edge building for chunked memories
-            if (this.config.multiGraphMemoryEnabled) {
+            if (graphCaps.multiGraphMemory) {
               try {
                 const graphContext = await ensureGraphContext(targetStorage);
                 const entityRef =
@@ -15477,6 +15489,7 @@ export class Orchestrator {
                   threadIdForExtraction ?? undefined,
                   threadEpisodeIdsForGraph,
                   graphContext.previousPersistedRelPath,
+                  graphCaps,
                 );
                 graphContext.previousPersistedRelPath = parentRelPath;
               } catch {
@@ -15636,7 +15649,7 @@ export class Orchestrator {
           source: extractionWriteSource,
         });
         // v8.2: graph edge building (fail-open — errors caught inside GraphIndex)
-        if (this.config.multiGraphMemoryEnabled) {
+        if (graphCaps.multiGraphMemory) {
           try {
             const graphContext = await ensureGraphContext(targetStorage);
             const entityRef =
@@ -15669,6 +15682,7 @@ export class Orchestrator {
               threadIdForExtraction ?? undefined,
               threadEpisodeIdsForGraph,
               graphContext.previousPersistedRelPath,
+              graphCaps,
             );
             graphContext.previousPersistedRelPath = memoryRelPath;
           } catch {
@@ -15940,6 +15954,7 @@ export class Orchestrator {
     threadIdForEdge: string | undefined,
     threadEpisodeIdsForGraph: string[] | undefined,
     fallbackCausalPredecessor: string | undefined,
+    graphCaps: GraphConstructionCapabilitySet = resolveGraphConstructionCapabilities(this.config),
   ): Promise<void> {
     // Entity siblings: other memories sharing the same entityRef
     const entitySiblings: string[] = [];
@@ -15976,7 +15991,7 @@ export class Orchestrator {
     }
     if (
       recentInThread.length === 0 &&
-      this.config.graphWriteSessionAdjacencyEnabled !== false &&
+      graphCaps.graphWriteSessionAdjacency &&
       fallbackCausalPredecessor &&
       fallbackCausalPredecessor !== memoryRelPath
     ) {
@@ -15993,6 +16008,12 @@ export class Orchestrator {
       recentInThread,
       entitySiblings,
       causalPredecessor,
+      graphCapsOverride: {
+        entityGraph: graphCaps.entityGraph,
+        timeGraph: graphCaps.timeGraph,
+        causalGraph: graphCaps.causalGraph,
+        multiGraphMemory: graphCaps.multiGraphMemory,
+      },
     });
   }
 
@@ -18608,6 +18629,8 @@ export class Orchestrator {
      * equivalent config-derived set — behavior-preserving.
      */
     caps?: CapabilitySet;
+    /** Graph-construction gates resolved at recall entry (#1566 Cluster A). */
+    graphCaps?: GraphConstructionCapabilitySet;
     queryAwarePrefilter?: QueryAwarePrefilter;
     abortSignal?: AbortSignal;
     /** Backend degradation observer — cold-tier QMD must report like hot (#1536). */
@@ -18630,6 +18653,7 @@ export class Orchestrator {
     // Prefer the threaded set; fall back to a config-derived set so direct
     // callers (unit tests) behave identically to the recall pipeline (#1523).
     const caps = options.caps ?? resolveCapabilities(this.config);
+    const graphCaps = options.graphCaps ?? resolveGraphConstructionCapabilities(this.config);
     if (options.queryAwarePrefilter?.candidatePaths?.size === 0) {
       if (options.xrayPoolSizeSink) options.xrayPoolSizeSink.size = 0;
       return [];
@@ -18844,7 +18868,7 @@ export class Orchestrator {
 
     const isFullModeGraphAssist =
       this.config.qmdTierParityGraphEnabled &&
-      this.config.multiGraphMemoryEnabled &&
+      graphCaps.multiGraphMemory &&
       caps.graphAssistInFullMode &&
       options.recallMode === "full" &&
       results.length >= Math.max(1, this.config.graphAssistMinSeedResults ?? 3);

package/dist/chunk-Y56J7CXW.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/graph.ts"],"sourcesContent":["/**\n * Multi-Graph Memory (MAGMA/SYNAPSE-inspired, v8.2)\n *\n * Maintains three typed edge graphs:\n *   entity.jsonl  — memories sharing a named entity (entityRef)\n *   time.jsonl    — consecutive memories in the same thread/session\n *   causal.jsonl  — memories linked by causal language heuristics\n *\n * Stored under `<memoryDir>/state/graphs/`.\n * All writes are fail-open: errors are caught/logged, never thrown.\n */\n\nimport { appendFile, mkdir, readFile } from \"node:fs/promises\";\nimport * as path from \"node:path\";\n\nimport { readEdgeConfidence } from \"./graph-edge-reinforcement.js\";\nimport { emitGraphEvent } from \"./graph-events.js\";\n\nexport type GraphType = \"entity\" | \"time\" | \"causal\";\n\nexport interface GraphEdge {\n  from: string; // relative memory path (e.g. \"facts/2026-02-22/abc.md\")\n  to: string; // relative memory path\n  type: GraphType;\n  weight: number; // 1.0 default, decay applied during traversal\n  label: string; // entity name, threadId, or matched causal phrase\n  ts: string; // ISO timestamp of edge creation\n\n  // Issue #681 — edge confidence + reinforcement (PR 1/3: schema + primitive only).\n  // Both fields are optional so existing edges without confidence still validate.\n  // Treat a missing `confidence` as 1.0 (legacy behavior) at read sites.\n  // PR 2/3 wires the maintenance decay job; PR 3/3 weights PageRank traversal by confidence.\n  confidence?: number; // [0, 1]; missing = 1.0\n  lastReinforcedAt?: string; // ISO timestamp of most recent reinforcement\n}\n\nexport interface GraphConfig {\n  multiGraphMemoryEnabled: boolean;\n  entityGraphEnabled: boolean;\n  timeGraphEnabled: boolean;\n  causalGraphEnabled: boolean;\n  maxGraphTraversalSteps: number;\n  graphActivationDecay: number;\n  maxEntityGraphEdgesPerMemory: number;\n  graphLateralInhibitionEnabled: boolean;\n  graphLateralInhibitionBeta: number;\n  graphLateralInhibitionTopM: number;\n  /**\n   * Issue #681 PR 3/3 — minimum edge confidence required for traversal.\n   * Edges with confidence below this floor are pruned. Legacy edges\n   * (no `confidence` field) are treated as 1.0 and always pass.\n   * Range `[0, 1]`. Default 0.2.\n   */\n  graphTraversalConfidenceFloor: number;\n  /**\n   * Issue #681 PR 3/3 — number of PageRank-style refinement iterations\n   * applied on top of BFS activation. Set to 0 to disable refinement\n   * and return raw BFS scores. Default 8.\n   */\n  graphTraversalPageRankIterations: number;\n}\n\n/** Default minimum edge confidence required for traversal (issue #681 PR 3/3). */\nexport const DEFAULT_GRAPH_TRAVERSAL_CONFIDENCE_FLOOR = 0.2;\n/** Default PageRank-style refinement iteration count (issue #681 PR 3/3). */\nexport const DEFAULT_GRAPH_TRAVERSAL_PAGERANK_ITERATIONS = 8;\n\n// Causal signal phrases — order matters (most specific first)\nexport const CAUSAL_PHRASES = [\"as a result\", \"led to\", \"because of\", \"therefore\", \"caused\", \"because\"];\n\nexport function graphsDir(memoryDir: string): string {\n  return path.join(memoryDir, \"state\", \"graphs\");\n}\n\nexport function graphFilePath(memoryDir: string, type: GraphType): string {\n  return path.join(graphsDir(memoryDir), `${type}.jsonl`);\n}\n\nexport async function ensureGraphsDir(memoryDir: string): Promise<void> {\n  await mkdir(graphsDir(memoryDir), { recursive: true });\n}\n\n// ---------------------------------------------------------------------------\n// Per-graph-file write lock (gotcha #40 promise-chain pattern).\n//\n// Both the append path (`appendEdge`) and the rewrite path used by the\n// decay maintenance job must serialize on the same lock keyed by the\n// JSONL file path. Without this, an extraction can append a new edge\n// between the decay job's read-snapshot and rewrite, silently dropping\n// the appended edge during active traffic (issue #729 / Codex P1).\n// ---------------------------------------------------------------------------\nconst graphWriteLocks = new Map<string, Promise<void>>();\n\n/**\n * Run `fn` while holding the write lock for the given graph JSONL file.\n *\n * The lock is keyed by absolute file path so concurrent writes to\n * different graph types proceed independently. The chain recovers from\n * rejection (gotcha #40) so a single I/O failure does not poison all\n * future writers, but the original error is still surfaced to the\n * caller of `withGraphWriteLock`.\n */\nexport function withGraphWriteLock<T>(filePath: string, fn: () => Promise<T>): Promise<T> {\n  const prev = graphWriteLocks.get(filePath) ?? Promise.resolve();\n  const next = prev.then(fn, fn);\n  graphWriteLocks.set(\n    filePath,\n    next.then(\n      () => undefined,\n      () => undefined\n    )\n  );\n  return next;\n}\n\nexport async function appendEdge(memoryDir: string, edge: GraphEdge): Promise<void> {\n  await ensureGraphsDir(memoryDir);\n  const filePath = graphFilePath(memoryDir, edge.type);\n  const line = `${JSON.stringify(edge)}\\n`;\n  await withGraphWriteLock(filePath, async () => {\n    await appendFile(filePath, line, \"utf8\");\n  });\n  // Emit edge-added event for SSE subscribers (issue #691 PR 5/5).\n  // Fail-open: emitGraphEvent catches listener errors so a bad SSE client\n  // can never surface into the extraction pipeline.\n  emitGraphEvent(memoryDir, \"edge-added\", {\n    source: edge.from,\n    target: edge.to,\n    kind: edge.type,\n    weight: edge.weight,\n    label: edge.label,\n    confidence: typeof edge.confidence === \"number\" ? edge.confidence : 1.0,\n  });\n}\n\nfunction isNodeError(err: unknown): err is NodeJS.ErrnoException {\n  return typeof err === \"object\" && err !== null && \"code\" in err;\n}\n\nfunction parseEdgesJsonl(raw: string, expectedType: GraphType): GraphEdge[] {\n  const edges: GraphEdge[] = [];\n  for (const line of raw.split(\"\\n\")) {\n    const trimmed = line.trim();\n    if (!trimmed) continue;\n    try {\n      const parsed = JSON.parse(trimmed) as unknown;\n      if (isValidGraphEdge(parsed, expectedType)) {\n        edges.push(parsed);\n      }\n    } catch {\n      // skip corrupt lines — fail-open for partial JSONL recovery\n    }\n  }\n  return edges;\n}\n\n/**\n * Read all edges of a given type from the JSONL file.\n * Returns [] if the file doesn't exist or any read error occurs (fail-open).\n *\n * Production traversal callers (recall/PageRank) depend on this fail-open\n * posture so a temporarily missing or unreadable graph file never blocks\n * a recall. Maintenance jobs that need to distinguish ENOENT from real\n * I/O failures must use {@link readEdgesStrict} instead.\n */\nexport async function readEdges(memoryDir: string, type: GraphType): Promise<GraphEdge[]> {\n  const filePath = graphFilePath(memoryDir, type);\n  try {\n    const raw = await readFile(filePath, \"utf8\");\n    return parseEdgesJsonl(raw, type);\n  } catch {\n    return [];\n  }\n}\n\n/**\n * Same as {@link readEdges} but only swallows `ENOENT`; all other read\n * errors (`EACCES`, `EIO`, …) are propagated. Used by the graph-edge\n * decay maintenance job so I/O outages surface as a failed run instead\n * of being silently reported as \"no edges to decay\" (issue #729 /\n * Codex P1, line 120).\n */\nexport async function readEdgesStrict(memoryDir: string, type: GraphType): Promise<GraphEdge[]> {\n  const filePath = graphFilePath(memoryDir, type);\n  try {\n    const raw = await readFile(filePath, \"utf8\");\n    return parseEdgesJsonl(raw, type);\n  } catch (err) {\n    if (isNodeError(err) && err.code === \"ENOENT\") {\n      return [];\n    }\n    throw err;\n  }\n}\n\n/**\n * Read edges from all enabled graph types.\n */\nexport async function readAllEdges(\n  memoryDir: string,\n  config: Pick<GraphConfig, \"entityGraphEnabled\" | \"timeGraphEnabled\" | \"causalGraphEnabled\">\n): Promise<GraphEdge[]> {\n  const parts: GraphEdge[][] = await Promise.all([\n    config.entityGraphEnabled ? readEdges(memoryDir, \"entity\") : Promise.resolve([]),\n    config.timeGraphEnabled ? readEdges(memoryDir, \"time\") : Promise.resolve([]),\n    config.causalGraphEnabled ? readEdges(memoryDir, \"causal\") : Promise.resolve([]),\n  ]);\n  return parts.flat();\n}\n\nexport interface GraphHealthFileStats {\n  type: GraphType;\n  filePath: string;\n  exists: boolean;\n  totalLines: number;\n  validEdges: number;\n  corruptLines: number;\n  uniqueNodes: number;\n}\n\nexport interface GraphHealthReport {\n  generatedAt: string;\n  enabledTypes: GraphType[];\n  totals: {\n    totalLines: number;\n    validEdges: number;\n    corruptLines: number;\n    uniqueNodes: number;\n  };\n  files: GraphHealthFileStats[];\n  repairGuidance?: string[];\n}\n\nfunction isValidGraphEdge(raw: unknown, expectedType: GraphType): raw is GraphEdge {\n  if (!raw || typeof raw !== \"object\") return false;\n  const edge = raw as Record<string, unknown>;\n  return (\n    edge.type === expectedType &&\n    typeof edge.from === \"string\" &&\n    edge.from.length > 0 &&\n    typeof edge.to === \"string\" &&\n    edge.to.length > 0 &&\n    typeof edge.weight === \"number\" &&\n    Number.isFinite(edge.weight) &&\n    typeof edge.label === \"string\" &&\n    typeof edge.ts === \"string\"\n  );\n}\n\nexport async function analyzeGraphHealth(\n  memoryDir: string,\n  options?: {\n    entityGraphEnabled?: boolean;\n    timeGraphEnabled?: boolean;\n    causalGraphEnabled?: boolean;\n    includeRepairGuidance?: boolean;\n  }\n): Promise<GraphHealthReport> {\n  const enabledTypes: GraphType[] = [];\n  if (options?.entityGraphEnabled !== false) enabledTypes.push(\"entity\");\n  if (options?.timeGraphEnabled !== false) enabledTypes.push(\"time\");\n  if (options?.causalGraphEnabled !== false) enabledTypes.push(\"causal\");\n\n  const files: GraphHealthFileStats[] = [];\n  const globalNodes = new Set<string>();\n\n  for (const type of enabledTypes) {\n    const filePath = graphFilePath(memoryDir, type);\n    let exists = true;\n    let totalLines = 0;\n    let validEdges = 0;\n    let corruptLines = 0;\n    const nodes = new Set<string>();\n\n    try {\n      const raw = await readFile(filePath, \"utf8\");\n      for (const line of raw.split(\"\\n\")) {\n        const trimmed = line.trim();\n        if (!trimmed) continue;\n        totalLines += 1;\n        try {\n          const parsed = JSON.parse(trimmed) as unknown;\n          if (!isValidGraphEdge(parsed, type)) {\n            corruptLines += 1;\n            continue;\n          }\n          validEdges += 1;\n          nodes.add(parsed.from);\n          nodes.add(parsed.to);\n          globalNodes.add(parsed.from);\n          globalNodes.add(parsed.to);\n        } catch {\n          corruptLines += 1;\n        }\n      }\n    } catch {\n      exists = false;\n    }\n\n    files.push({\n      type,\n      filePath,\n      exists,\n      totalLines,\n      validEdges,\n      corruptLines,\n      uniqueNodes: nodes.size,\n    });\n  }\n\n  const totals = files.reduce(\n    (acc, item) => {\n      acc.totalLines += item.totalLines;\n      acc.validEdges += item.validEdges;\n      acc.corruptLines += item.corruptLines;\n      return acc;\n    },\n    {\n      totalLines: 0,\n      validEdges: 0,\n      corruptLines: 0,\n      uniqueNodes: globalNodes.size,\n    }\n  );\n  totals.uniqueNodes = globalNodes.size;\n\n  const report: GraphHealthReport = {\n    generatedAt: new Date().toISOString(),\n    enabledTypes,\n    totals,\n    files,\n  };\n\n  if (options?.includeRepairGuidance === true) {\n    const guidance: string[] = [];\n    if (totals.corruptLines > 0) {\n      guidance.push(\n        \"Corrupt graph lines detected: back up memory/state/graphs, then rebuild graphs from clean memory replay/extraction runs.\"\n      );\n    }\n    if (totals.validEdges === 0) {\n      guidance.push(\n        \"No valid edges detected yet: run normal extraction traffic (or replay ingestion) to seed graph files.\"\n      );\n    }\n    if (guidance.length > 0) report.repairGuidance = guidance;\n  }\n\n  return report;\n}\n\n/**\n * Detect causal signal phrases in text. Returns the first matched phrase, or null.\n */\nexport function detectCausalPhrase(text: string): string | null {\n  const lower = text.toLowerCase();\n  for (const phrase of CAUSAL_PHRASES) {\n    if (lower.includes(phrase)) return phrase;\n  }\n  return null;\n}\n\n/**\n * GraphIndex — builds and updates the three memory graphs.\n *\n * Usage (orchestrator):\n *   this.graphIndex = new GraphIndex(config.memoryDir, config);\n *\n *   // After each memory write:\n *   await this.graphIndex.onMemoryWritten(memoryPath, frontmatter, threadId, recentInThread);\n */\nexport class GraphIndex {\n  private readonly memoryDir: string;\n  private readonly cfg: GraphConfig;\n\n  // Cache for readAllEdges() result.  With 30k+ entity edges (6 MB JSONL) the\n  // file read + JSON parse takes 2-4 s per call.  This instance-level cache\n  // eliminates that overhead on every spreadingActivation() call; it is\n  // invalidated (set to null) in onMemoryWritten() so new edges appear promptly.\n  private edgeCache: { allEdges: GraphEdge[]; loadedAt: number } | null = null;\n  private static readonly EDGE_CACHE_TTL_MS = 300_000; // 5 minutes\n\n  constructor(memoryDir: string, cfg: GraphConfig) {\n    this.memoryDir = memoryDir;\n    this.cfg = cfg;\n  }\n\n  /** Clear the edge cache so the next spreadingActivation() re-reads from disk.\n   *  Call after any code path that appends edges outside of onMemoryWritten(). */\n  invalidateEdgeCache(): void {\n    this.edgeCache = null;\n  }\n\n  private async loadEdgesCached(): Promise<GraphEdge[]> {\n    if (this.edgeCache && Date.now() - this.edgeCache.loadedAt < GraphIndex.EDGE_CACHE_TTL_MS) {\n      return this.edgeCache.allEdges;\n    }\n    const allEdges = await readAllEdges(this.memoryDir, {\n      entityGraphEnabled: this.cfg.entityGraphEnabled,\n      timeGraphEnabled: this.cfg.timeGraphEnabled,\n      causalGraphEnabled: this.cfg.causalGraphEnabled,\n    });\n    this.edgeCache = { allEdges, loadedAt: Date.now() };\n    return allEdges;\n  }\n\n  /**\n   * Called after a memory is written to disk.\n   *\n   * @param memoryPath - relative path from memoryDir (e.g. \"facts/2026-02-22/abc.md\")\n   * @param entityRef  - entityRef frontmatter field (if any)\n   * @param content    - full memory text (for causal detection)\n   * @param created    - ISO timestamp of this memory\n   * @param threadId   - current thread ID (for time graph)\n   * @param recentInThread - paths of the N most-recent memories in this thread (for time graph)\n   * @param entitySiblings - paths of other memories that share the same entityRef (for entity graph)\n   */\n  async onMemoryWritten(opts: {\n    memoryPath: string;\n    entityRef?: string;\n    content: string;\n    created: string;\n    threadId?: string;\n    recentInThread?: string[];\n    entitySiblings?: string[];\n    causalPredecessor?: string;\n  }): Promise<void> {\n    if (!this.cfg.multiGraphMemoryEnabled) return;\n    const ts = new Date().toISOString();\n\n    try {\n      // Entity graph\n      if (this.cfg.entityGraphEnabled && opts.entityRef && opts.entitySiblings?.length) {\n        const siblings = opts.entitySiblings.slice(0, this.cfg.maxEntityGraphEdgesPerMemory);\n        for (const sibling of siblings) {\n          await appendEdge(this.memoryDir, {\n            from: opts.memoryPath,\n            to: sibling,\n            type: \"entity\",\n            weight: 1.0,\n            label: opts.entityRef,\n            ts,\n          });\n        }\n      }\n\n      // Time graph — link to most recent memory in same thread\n      if (this.cfg.timeGraphEnabled && opts.threadId && opts.recentInThread?.length) {\n        const predecessor = opts.recentInThread[opts.recentInThread.length - 1];\n        if (predecessor && predecessor !== opts.memoryPath) {\n          await appendEdge(this.memoryDir, {\n            from: predecessor,\n            to: opts.memoryPath,\n            type: \"time\",\n            weight: 1.0,\n            label: opts.threadId,\n            ts,\n          });\n        }\n      }\n\n      // Causal graph\n      if (this.cfg.causalGraphEnabled && opts.causalPredecessor) {\n        const phrase = detectCausalPhrase(opts.content);\n        if (phrase) {\n          await appendEdge(this.memoryDir, {\n            from: opts.causalPredecessor,\n            to: opts.memoryPath,\n            type: \"causal\",\n            weight: 1.0,\n            label: phrase,\n            ts,\n          });\n        }\n      }\n    } catch (err) {\n      // Fail-open: graph write errors must never surface to caller\n      const { log } = await import(\"./logger.js\");\n      log.warn(`[graph] onMemoryWritten error: ${err}`);\n    } finally {\n      // Invalidate edge cache so spreadingActivation() picks up new edges.\n      // In `finally` so the cache is cleared even on partial write failure.\n      this.edgeCache = null;\n    }\n  }\n\n  /**\n   * Spreading activation BFS (SYNAPSE-inspired).\n   *\n   * Starting from `seeds`, traverse the combined graph for up to `maxSteps` hops.\n   * Each candidate gets an activation score = edge.weight × edgeConfidence × decay^hop.\n   *\n   * Issue #681 PR 3/3 — confidence-aware traversal:\n   *   - Each edge's `weight` is multiplied by its `confidence` (legacy edges\n   *     missing `confidence` are treated as 1.0, preserving prior behavior).\n   *   - Edges with `confidence < graphTraversalConfidenceFloor` are pruned and\n   *     contribute neither activation nor downstream neighbors.\n   *   - When `graphTraversalPageRankIterations > 0`, an additional PageRank-\n   *     style refinement pass redistributes activation along confidence-weighted\n   *     edges, sharpening the ranking among multi-hop candidates.\n   *   - Per-result provenance includes the highest-confidence edge that landed\n   *     on each candidate, so the X-ray surface can attribute pruning and\n   *     ranking decisions back to specific edges.\n   *\n   * @param seeds    - initial memory paths to expand from (e.g. QMD top results)\n   * @param maxSteps - max BFS hops (from config: maxGraphTraversalSteps)\n   * @returns Array of {path, score, edgeConfidence, ...} sorted descending, not including seed paths\n   */\n  async spreadingActivation(\n    seeds: string[],\n    maxSteps?: number,\n    opts?: {\n      /**\n       * Issue #681 — when `true`, bypasses the configured\n       * `graphTraversalConfidenceFloor` and includes low-confidence\n       * edges in traversal.  Equivalent to forcing the floor to `0`.\n       * Default `false` (floor from config is applied).\n       */\n      includeLowConfidence?: boolean;\n      /** Absolute deadline in ms-since-epoch for post-retrieval assembly. */\n      deadlineAtMs?: number;\n    }\n  ): Promise<\n    Array<{\n      path: string;\n      score: number;\n      seed: string;\n      hopDepth: number;\n      decayedWeight: number;\n      graphType: \"entity\" | \"time\" | \"causal\";\n      /**\n       * Confidence of the edge that produced this candidate's recorded\n       * provenance (the strongest edge along the chosen entry path).\n       * In `[0, 1]`. Legacy edges without `confidence` surface as 1.0.\n       */\n      edgeConfidence: number;\n    }>\n  > {\n    if (!this.cfg.multiGraphMemoryEnabled) return [];\n    const steps = maxSteps ?? this.cfg.maxGraphTraversalSteps;\n    const decay = this.cfg.graphActivationDecay;\n    // When `includeLowConfidence` is set, use floor=0 so all edges\n    // participate in traversal regardless of their decay state.\n    // Otherwise clamp the configured floor into [0, 1] so misconfiguration\n    // cannot (a) admit edges with negative confidence or (b) reject every\n    // edge.\n    const floor =\n      opts?.includeLowConfidence === true ? 0 : clampConfidenceFloor(this.cfg.graphTraversalConfidenceFloor);\n    const iterations = clampPageRankIterations(this.cfg.graphTraversalPageRankIterations);\n    const deadlineAtMs = opts?.deadlineAtMs;\n    const deadlineExpired = (): boolean =>\n      typeof deadlineAtMs === \"number\" && Date.now() >= deadlineAtMs;\n\n    try {\n      if (deadlineExpired()) return [];\n      const allEdges = await this.loadEdgesCached();\n      if (deadlineExpired()) return [];\n\n      // Build adjacency index: from → edges, to → edges (bidirectional for entity/time, directional for causal).\n      // Edges below the confidence floor are pruned at index time so neither\n      // direct activation nor downstream BFS expansion can re-introduce them.\n      const adj = new Map<string, GraphEdge[]>();\n      for (let i = 0; i < allEdges.length; i += 1) {\n        if ((i & 1023) === 0 && deadlineExpired()) return [];\n        const edge = allEdges[i];\n        const conf = readEdgeConfidence(edge);\n        if (conf < floor) continue;\n        if (!adj.has(edge.from)) adj.set(edge.from, []);\n        adj.get(edge.from)!.push(edge);\n        // Entity and time edges are bidirectional\n        if (edge.type !== \"causal\") {\n          if (!adj.has(edge.to)) adj.set(edge.to, []);\n          adj.get(edge.to)!.push({ ...edge, from: edge.to, to: edge.from });\n        }\n      }\n\n      const seedSet = new Set(seeds);\n      const scores = new Map<string, number>(); // candidate path → accumulated activation score\n      const provenance = new Map<\n        string,\n        {\n          seed: string;\n          hopDepth: number;\n          decayedWeight: number;\n          graphType: \"entity\" | \"time\" | \"causal\";\n          edgeConfidence: number;\n        }\n      >();\n      let frontier = new Map<string, { node: string; seed: string; activation: number }>();\n      const reachedBySeed = new Map<string, Set<string>>();\n      for (const seed of seeds) {\n        frontier.set(`${seed}\\0${seed}`, { node: seed, seed, activation: 1 });\n        reachedBySeed.set(seed, new Set([seed]));\n      }\n      const finalizeScores = () =>\n        Array.from(scores.entries())\n          .map(([p, score]) => ({\n            path: p,\n            score,\n            seed: provenance.get(p)?.seed ?? \"\",\n            hopDepth: provenance.get(p)?.hopDepth ?? 0,\n            decayedWeight: provenance.get(p)?.decayedWeight ?? 0,\n            graphType: provenance.get(p)?.graphType ?? \"entity\",\n            edgeConfidence: provenance.get(p)?.edgeConfidence ?? 1,\n          }))\n          .sort((a, b) => b.score - a.score);\n\n      for (let hop = 0; hop < steps && frontier.size > 0; hop++) {\n        if (deadlineExpired()) return finalizeScores();\n        const nextFrontier = new Map<string, { node: string; seed: string; activation: number }>();\n\n        for (const { node, seed: sourceSeed, activation } of frontier.values()) {\n          const edges = adj.get(node) ?? [];\n          for (let i = 0; i < edges.length; i += 1) {\n            if ((i & 1023) === 0 && deadlineExpired()) return finalizeScores();\n            const edge = edges[i];\n            const neighbor = edge.to === node ? edge.from : edge.to;\n            const conf = readEdgeConfidence(edge);\n            // Defense in depth: the adjacency build already drops sub-floor\n            // edges, but if a synthesized reverse edge ever bypassed that\n            // path, this guard keeps spreading activation honest.\n            if (conf < floor) continue;\n            const score = activation * edge.weight * conf * decay;\n            const reachedForSeed = reachedBySeed.get(sourceSeed);\n            if (reachedForSeed?.has(neighbor)) {\n              continue;\n            }\n\n            if (!seedSet.has(neighbor)) {\n              const existing = scores.get(neighbor) ?? 0;\n              scores.set(neighbor, existing + score);\n\n              const prev = provenance.get(neighbor);\n              if (!prev || hop + 1 < prev.hopDepth || (hop + 1 === prev.hopDepth && score > prev.decayedWeight)) {\n                provenance.set(neighbor, {\n                  seed: sourceSeed,\n                  hopDepth: hop + 1,\n                  decayedWeight: score,\n                  graphType: edge.type,\n                  edgeConfidence: conf,\n                });\n              }\n\n              if (hop + 1 < steps) {\n                const frontierKey = `${sourceSeed}\\0${neighbor}`;\n                const existingFrontier = nextFrontier.get(frontierKey);\n                if (existingFrontier) {\n                  existingFrontier.activation += score;\n                } else {\n                  nextFrontier.set(frontierKey, {\n                    node: neighbor,\n                    seed: sourceSeed,\n                    activation: score,\n                  });\n                }\n              }\n            }\n          }\n        }\n\n        for (const { node, seed } of nextFrontier.values()) {\n          reachedBySeed.get(seed)?.add(node);\n        }\n        frontier = nextFrontier;\n      }\n\n      // Issue #681 PR 3/3 — optional PageRank-style refinement.\n      // Redistributes a node's accumulated activation along its outgoing\n      // edges, weighted by edge confidence. Damping is fixed at the\n      // canonical 0.85 so the ranking stays comparable across queries;\n      // the `iterations` knob bounds compute, not behavior shape.\n      if (!deadlineExpired() && iterations > 0 && scores.size > 1) {\n        applyPageRankRefinement(scores, adj, {\n          iterations,\n          floor,\n          damping: 0.85,\n          deadlineAtMs,\n        });\n      }\n\n      // Apply lateral inhibition if enabled (Synapse-inspired competitive suppression)\n      if (deadlineExpired()) return finalizeScores();\n      if (this.cfg.graphLateralInhibitionEnabled && scores.size > 1) {\n        const inhibited = applyLateralInhibition(scores, {\n          beta: this.cfg.graphLateralInhibitionBeta,\n          topM: this.cfg.graphLateralInhibitionTopM,\n        });\n        for (const [k, v] of inhibited) {\n          scores.set(k, v);\n        }\n      }\n\n      return finalizeScores();\n    } catch (err) {\n      const { log } = await import(\"./logger.js\");\n      log.warn(`[graph] spreadingActivation error: ${err}`);\n      return [];\n    }\n  }\n}\n\n/**\n * Clamp `graphTraversalConfidenceFloor` into the legal range `[0, 1]`.\n * Non-finite or non-numeric values fall back to the documented default\n * so misconfiguration cannot silently disable the floor or reject every edge.\n *\n * Exported for tests; call sites in `spreadingActivation` use it to make\n * the contract explicit at every boundary.\n */\nexport function clampConfidenceFloor(raw: unknown): number {\n  if (typeof raw !== \"number\" || !Number.isFinite(raw)) {\n    return DEFAULT_GRAPH_TRAVERSAL_CONFIDENCE_FLOOR;\n  }\n  if (raw < 0) return 0;\n  if (raw > 1) return 1;\n  return raw;\n}\n\n/**\n * Clamp `graphTraversalPageRankIterations` into a non-negative integer.\n * Negative or non-finite values fall back to 0 (disable refinement) so\n * misconfiguration cannot stall recall in an unbounded loop.\n */\nexport function clampPageRankIterations(raw: unknown): number {\n  if (typeof raw !== \"number\" || !Number.isFinite(raw)) return 0;\n  if (raw <= 0) return 0;\n  return Math.floor(raw);\n}\n\n/**\n * PageRank-style refinement on top of the BFS activation map.\n *\n * Each iteration redistributes a fraction of every node's score along\n * its outgoing edges, scaled by edge confidence. Confidence below\n * `floor` is filtered out before redistribution, mirroring the BFS\n * pruning rule. Mutates `scores` in place.\n *\n * Exported for tests; in production, call sites pass the same adjacency\n * map already used by BFS so behavior stays consistent.\n */\nexport function applyPageRankRefinement(\n  scores: Map<string, number>,\n  adj: Map<string, GraphEdge[]>,\n  opts: { iterations: number; floor: number; damping: number; deadlineAtMs?: number }\n): void {\n  const { iterations, floor, damping, deadlineAtMs } = opts;\n  if (iterations <= 0 || scores.size === 0) return;\n  const safeDamping = Math.min(1, Math.max(0, damping));\n  const deadlineExpired = (): boolean =>\n    typeof deadlineAtMs === \"number\" && Date.now() >= deadlineAtMs;\n\n  // Pre-compute confidence-weighted out-edge totals for normalization.\n  // Done once per refinement, not per iteration, since adjacency is\n  // immutable inside the loop.\n  //\n  // Codex P1 (#735): the denominator MUST be computed over the same\n  // eligible-neighbor set the iteration redistributes into — i.e.\n  // edges whose neighbor is in `scores`. Counting edges-to-seeds (or\n  // edges-to-unseen-nodes) in the denominator while dropping their\n  // flow during iteration leaks `safeDamping × score` every pass and\n  // collapses leaf candidates' scores instead of just re-ranking them.\n  const eligible = (edge: GraphEdge, fromNode: string): boolean => {\n    if (readEdgeConfidence(edge) < floor) return false;\n    const neighbor = edge.to === fromNode ? edge.from : edge.to;\n    return scores.has(neighbor);\n  };\n  const outboundTotal = new Map<string, number>();\n  for (const [node, edges] of adj.entries()) {\n    if (deadlineExpired()) return;\n    if (!scores.has(node)) continue; // only candidate nodes redistribute\n    let sum = 0;\n    for (const edge of edges) {\n      if (!eligible(edge, node)) continue;\n      sum += readEdgeConfidence(edge) * edge.weight;\n    }\n    if (sum > 0) outboundTotal.set(node, sum);\n  }\n\n  for (let i = 0; i < iterations; i += 1) {\n    if (deadlineExpired()) return;\n    const next = new Map<string, number>();\n    // Teleport / damping floor: every node retains `(1 - damping) * score`\n    // of its current activation so dangling nodes do not bleed to zero.\n    for (const [node, score] of scores) {\n      next.set(node, (1 - safeDamping) * score);\n    }\n    for (const [node, score] of scores) {\n      const outEdges = adj.get(node);\n      const total = outboundTotal.get(node);\n      // Dangling-node fallback: when a candidate has zero eligible\n      // outflow (no in-scores neighbors above the floor), the\n      // `safeDamping × score` portion would otherwise evaporate. Keep\n      // it on `node` so total mass is conserved and the score reflects\n      // the candidate's standing rather than its in-degree topology.\n      if (!outEdges || outEdges.length === 0 || !total || total <= 0) {\n        next.set(node, (next.get(node) ?? 0) + safeDamping * score);\n        continue;\n      }\n      for (let edgeIndex = 0; edgeIndex < outEdges.length; edgeIndex += 1) {\n        if ((edgeIndex & 1023) === 0 && deadlineExpired()) return;\n        const edge = outEdges[edgeIndex];\n        if (!eligible(edge, node)) continue;\n        const conf = readEdgeConfidence(edge);\n        const neighbor = edge.to === node ? edge.from : edge.to;\n        const flow = safeDamping * score * ((conf * edge.weight) / total);\n        next.set(neighbor, (next.get(neighbor) ?? 0) + flow);\n      }\n    }\n    for (const [node, score] of next) {\n      scores.set(node, score);\n    }\n  }\n}\n\n/**\n * Lateral inhibition (Synapse-inspired).\n *\n * For each node, the top-M higher-activation competitors exert inhibition\n * proportional to their activation difference. Output is clamped to [0, ∞).\n *\n * No sigmoid is applied here — downstream `normalizeGraphActivationScore`\n * already applies x/(1+x) soft squash, so adding a sigmoid would double-\n * normalize and cap graph influence at ~50%.\n *\n * Formula: u_hat_i = max(0, u_i - beta * sum_{k in top-M where u_k > u_i}(u_k - u_i))\n *\n * When beta=0 or topM=0, returns original scores unchanged (no-op).\n */\nexport function applyLateralInhibition(\n  scores: Map<string, number>,\n  opts: { beta: number; topM: number }\n): Map<string, number> {\n  const { beta, topM } = opts;\n  if (beta === 0 || topM === 0) return new Map(scores);\n\n  const sorted = Array.from(scores.entries()).sort((a, b) => b[1] - a[1]);\n  const topCompetitors = sorted.slice(0, topM);\n\n  const result = new Map<string, number>();\n  for (const [node, u] of scores) {\n    let inhibition = 0;\n    for (const [, uK] of topCompetitors) {\n      if (uK > u) {\n        inhibition += uK - u;\n      }\n    }\n    result.set(node, Math.max(0, u - beta * inhibition));\n  }\n\n  return 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