@reicek/neataptic-ts 0.1.0

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Files changed (272) hide show
  1. package/.github/ISSUE_TEMPLATE/bug_report.md +33 -0
  2. package/.github/ISSUE_TEMPLATE/feature_request.md +27 -0
  3. package/.github/PULL_REQUEST_TEMPLATE.md +28 -0
  4. package/.github/workflows/ci.yml +41 -0
  5. package/.github/workflows/deploy-pages.yml +29 -0
  6. package/.github/workflows/manual_release_pipeline.yml +62 -0
  7. package/.github/workflows/publish.yml +85 -0
  8. package/.github/workflows/release_dispatch.yml +38 -0
  9. package/.travis.yml +5 -0
  10. package/CONTRIBUTING.md +92 -0
  11. package/LICENSE +24 -0
  12. package/ONNX_EXPORT.md +87 -0
  13. package/README.md +1173 -0
  14. package/RELEASE.md +54 -0
  15. package/dist-docs/package.json +1 -0
  16. package/dist-docs/scripts/generate-docs.d.ts +2 -0
  17. package/dist-docs/scripts/generate-docs.d.ts.map +1 -0
  18. package/dist-docs/scripts/generate-docs.js +536 -0
  19. package/dist-docs/scripts/generate-docs.js.map +1 -0
  20. package/dist-docs/scripts/render-docs-html.d.ts +2 -0
  21. package/dist-docs/scripts/render-docs-html.d.ts.map +1 -0
  22. package/dist-docs/scripts/render-docs-html.js +148 -0
  23. package/dist-docs/scripts/render-docs-html.js.map +1 -0
  24. package/docs/FOLDERS.md +14 -0
  25. package/docs/README.md +1173 -0
  26. package/docs/architecture/README.md +1391 -0
  27. package/docs/architecture/index.html +938 -0
  28. package/docs/architecture/network/README.md +1210 -0
  29. package/docs/architecture/network/index.html +908 -0
  30. package/docs/assets/ascii-maze.bundle.js +16542 -0
  31. package/docs/assets/ascii-maze.bundle.js.map +7 -0
  32. package/docs/index.html +1419 -0
  33. package/docs/methods/README.md +670 -0
  34. package/docs/methods/index.html +477 -0
  35. package/docs/multithreading/README.md +274 -0
  36. package/docs/multithreading/index.html +215 -0
  37. package/docs/multithreading/workers/README.md +23 -0
  38. package/docs/multithreading/workers/browser/README.md +39 -0
  39. package/docs/multithreading/workers/browser/index.html +70 -0
  40. package/docs/multithreading/workers/index.html +57 -0
  41. package/docs/multithreading/workers/node/README.md +33 -0
  42. package/docs/multithreading/workers/node/index.html +66 -0
  43. package/docs/neat/README.md +1284 -0
  44. package/docs/neat/index.html +906 -0
  45. package/docs/src/README.md +2659 -0
  46. package/docs/src/index.html +1579 -0
  47. package/jest.config.ts +32 -0
  48. package/package.json +99 -0
  49. package/plans/HyperMorphoNEAT.md +293 -0
  50. package/plans/ONNX_EXPORT_PLAN.md +46 -0
  51. package/scripts/generate-docs.ts +486 -0
  52. package/scripts/render-docs-html.ts +138 -0
  53. package/scripts/types.d.ts +2 -0
  54. package/src/README.md +2659 -0
  55. package/src/architecture/README.md +1391 -0
  56. package/src/architecture/activationArrayPool.ts +135 -0
  57. package/src/architecture/architect.ts +635 -0
  58. package/src/architecture/connection.ts +148 -0
  59. package/src/architecture/group.ts +406 -0
  60. package/src/architecture/layer.ts +804 -0
  61. package/src/architecture/network/README.md +1210 -0
  62. package/src/architecture/network/network.activate.ts +223 -0
  63. package/src/architecture/network/network.connect.ts +157 -0
  64. package/src/architecture/network/network.deterministic.ts +167 -0
  65. package/src/architecture/network/network.evolve.ts +426 -0
  66. package/src/architecture/network/network.gating.ts +186 -0
  67. package/src/architecture/network/network.genetic.ts +247 -0
  68. package/src/architecture/network/network.mutate.ts +624 -0
  69. package/src/architecture/network/network.onnx.ts +463 -0
  70. package/src/architecture/network/network.prune.ts +216 -0
  71. package/src/architecture/network/network.remove.ts +96 -0
  72. package/src/architecture/network/network.serialize.ts +309 -0
  73. package/src/architecture/network/network.slab.ts +262 -0
  74. package/src/architecture/network/network.standalone.ts +246 -0
  75. package/src/architecture/network/network.stats.ts +59 -0
  76. package/src/architecture/network/network.topology.ts +86 -0
  77. package/src/architecture/network/network.training.ts +1278 -0
  78. package/src/architecture/network.ts +1302 -0
  79. package/src/architecture/node.ts +1288 -0
  80. package/src/architecture/onnx.ts +3 -0
  81. package/src/config.ts +83 -0
  82. package/src/methods/README.md +670 -0
  83. package/src/methods/activation.ts +372 -0
  84. package/src/methods/connection.ts +31 -0
  85. package/src/methods/cost.ts +347 -0
  86. package/src/methods/crossover.ts +63 -0
  87. package/src/methods/gating.ts +43 -0
  88. package/src/methods/methods.ts +8 -0
  89. package/src/methods/mutation.ts +300 -0
  90. package/src/methods/rate.ts +257 -0
  91. package/src/methods/selection.ts +65 -0
  92. package/src/multithreading/README.md +274 -0
  93. package/src/multithreading/multi.ts +339 -0
  94. package/src/multithreading/workers/README.md +23 -0
  95. package/src/multithreading/workers/browser/README.md +39 -0
  96. package/src/multithreading/workers/browser/testworker.ts +99 -0
  97. package/src/multithreading/workers/node/README.md +33 -0
  98. package/src/multithreading/workers/node/testworker.ts +72 -0
  99. package/src/multithreading/workers/node/worker.ts +70 -0
  100. package/src/multithreading/workers/workers.ts +22 -0
  101. package/src/neat/README.md +1284 -0
  102. package/src/neat/neat.adaptive.ts +544 -0
  103. package/src/neat/neat.compat.ts +164 -0
  104. package/src/neat/neat.constants.ts +20 -0
  105. package/src/neat/neat.diversity.ts +217 -0
  106. package/src/neat/neat.evaluate.ts +328 -0
  107. package/src/neat/neat.evolve.ts +1026 -0
  108. package/src/neat/neat.export.ts +249 -0
  109. package/src/neat/neat.helpers.ts +235 -0
  110. package/src/neat/neat.lineage.ts +220 -0
  111. package/src/neat/neat.multiobjective.ts +260 -0
  112. package/src/neat/neat.mutation.ts +718 -0
  113. package/src/neat/neat.objectives.ts +157 -0
  114. package/src/neat/neat.pruning.ts +190 -0
  115. package/src/neat/neat.selection.ts +269 -0
  116. package/src/neat/neat.speciation.ts +460 -0
  117. package/src/neat/neat.species.ts +151 -0
  118. package/src/neat/neat.telemetry.exports.ts +469 -0
  119. package/src/neat/neat.telemetry.ts +933 -0
  120. package/src/neat/neat.types.ts +275 -0
  121. package/src/neat.ts +1042 -0
  122. package/src/neataptic.ts +10 -0
  123. package/test/architecture/activationArrayPool.capacity.test.ts +19 -0
  124. package/test/architecture/activationArrayPool.test.ts +46 -0
  125. package/test/architecture/connection.test.ts +290 -0
  126. package/test/architecture/group.test.ts +950 -0
  127. package/test/architecture/layer.test.ts +1535 -0
  128. package/test/architecture/network.pruning.test.ts +65 -0
  129. package/test/architecture/node.test.ts +1602 -0
  130. package/test/examples/asciiMaze/asciiMaze.e2e.test.ts +499 -0
  131. package/test/examples/asciiMaze/asciiMaze.ts +41 -0
  132. package/test/examples/asciiMaze/browser-entry.ts +164 -0
  133. package/test/examples/asciiMaze/browserLogger.ts +221 -0
  134. package/test/examples/asciiMaze/browserTerminalUtility.ts +48 -0
  135. package/test/examples/asciiMaze/colors.ts +119 -0
  136. package/test/examples/asciiMaze/dashboardManager.ts +968 -0
  137. package/test/examples/asciiMaze/evolutionEngine.ts +1248 -0
  138. package/test/examples/asciiMaze/fitness.ts +136 -0
  139. package/test/examples/asciiMaze/index.html +128 -0
  140. package/test/examples/asciiMaze/index.ts +26 -0
  141. package/test/examples/asciiMaze/interfaces.ts +235 -0
  142. package/test/examples/asciiMaze/mazeMovement.ts +996 -0
  143. package/test/examples/asciiMaze/mazeUtils.ts +278 -0
  144. package/test/examples/asciiMaze/mazeVision.ts +402 -0
  145. package/test/examples/asciiMaze/mazeVisualization.ts +585 -0
  146. package/test/examples/asciiMaze/mazes.ts +245 -0
  147. package/test/examples/asciiMaze/networkRefinement.ts +76 -0
  148. package/test/examples/asciiMaze/networkVisualization.ts +901 -0
  149. package/test/examples/asciiMaze/terminalUtility.ts +73 -0
  150. package/test/methods/activation.test.ts +1142 -0
  151. package/test/methods/connection.test.ts +146 -0
  152. package/test/methods/cost.test.ts +1123 -0
  153. package/test/methods/crossover.test.ts +202 -0
  154. package/test/methods/gating.test.ts +144 -0
  155. package/test/methods/mutation.test.ts +451 -0
  156. package/test/methods/optimizers.advanced.test.ts +80 -0
  157. package/test/methods/optimizers.behavior.test.ts +105 -0
  158. package/test/methods/optimizers.formula.test.ts +89 -0
  159. package/test/methods/rate.cosineWarmRestarts.test.ts +44 -0
  160. package/test/methods/rate.linearWarmupDecay.test.ts +41 -0
  161. package/test/methods/rate.reduceOnPlateau.test.ts +45 -0
  162. package/test/methods/rate.test.ts +684 -0
  163. package/test/methods/selection.test.ts +245 -0
  164. package/test/multithreading/activations.functions.test.ts +54 -0
  165. package/test/multithreading/multi.test.ts +290 -0
  166. package/test/multithreading/worker.node.process.test.ts +39 -0
  167. package/test/multithreading/workers.coverage.test.ts +36 -0
  168. package/test/multithreading/workers.dynamic.import.test.ts +8 -0
  169. package/test/neat/neat.adaptive.complexityBudget.test.ts +34 -0
  170. package/test/neat/neat.adaptive.criterion.complexity.test.ts +50 -0
  171. package/test/neat/neat.adaptive.mutation.strategy.test.ts +37 -0
  172. package/test/neat/neat.adaptive.operator.decay.test.ts +31 -0
  173. package/test/neat/neat.adaptive.phasedComplexity.test.ts +25 -0
  174. package/test/neat/neat.adaptive.pruning.test.ts +25 -0
  175. package/test/neat/neat.adaptive.targetSpecies.test.ts +43 -0
  176. package/test/neat/neat.additional.coverage.test.ts +126 -0
  177. package/test/neat/neat.advanced.enhancements.test.ts +85 -0
  178. package/test/neat/neat.advanced.test.ts +589 -0
  179. package/test/neat/neat.diversity.autocompat.test.ts +47 -0
  180. package/test/neat/neat.diversity.metrics.test.ts +21 -0
  181. package/test/neat/neat.diversity.stats.test.ts +44 -0
  182. package/test/neat/neat.enhancements.test.ts +79 -0
  183. package/test/neat/neat.entropy.ancestorAdaptive.test.ts +133 -0
  184. package/test/neat/neat.entropy.compat.csv.test.ts +108 -0
  185. package/test/neat/neat.evolution.pruning.test.ts +39 -0
  186. package/test/neat/neat.fastmode.autotune.test.ts +42 -0
  187. package/test/neat/neat.innovation.test.ts +134 -0
  188. package/test/neat/neat.lineage.antibreeding.test.ts +35 -0
  189. package/test/neat/neat.lineage.entropy.test.ts +56 -0
  190. package/test/neat/neat.lineage.inbreeding.test.ts +49 -0
  191. package/test/neat/neat.lineage.pressure.test.ts +29 -0
  192. package/test/neat/neat.multiobjective.adaptive.test.ts +57 -0
  193. package/test/neat/neat.multiobjective.dynamic.schedule.test.ts +46 -0
  194. package/test/neat/neat.multiobjective.dynamic.test.ts +31 -0
  195. package/test/neat/neat.multiobjective.fastsort.delegation.test.ts +51 -0
  196. package/test/neat/neat.multiobjective.prune.test.ts +39 -0
  197. package/test/neat/neat.multiobjective.test.ts +21 -0
  198. package/test/neat/neat.mutation.undefined.pool.test.ts +24 -0
  199. package/test/neat/neat.objective.events.test.ts +26 -0
  200. package/test/neat/neat.objective.importance.test.ts +21 -0
  201. package/test/neat/neat.objective.lifetimes.test.ts +33 -0
  202. package/test/neat/neat.offspring.allocation.test.ts +22 -0
  203. package/test/neat/neat.operator.bandit.test.ts +17 -0
  204. package/test/neat/neat.operator.phases.test.ts +38 -0
  205. package/test/neat/neat.pruneInactive.behavior.test.ts +54 -0
  206. package/test/neat/neat.reenable.adaptation.test.ts +18 -0
  207. package/test/neat/neat.rng.state.test.ts +22 -0
  208. package/test/neat/neat.spawn.add.test.ts +123 -0
  209. package/test/neat/neat.speciation.test.ts +96 -0
  210. package/test/neat/neat.species.allocation.telemetry.test.ts +26 -0
  211. package/test/neat/neat.species.history.csv.test.ts +24 -0
  212. package/test/neat/neat.telemetry.advanced.test.ts +226 -0
  213. package/test/neat/neat.telemetry.csv.lineage.test.ts +19 -0
  214. package/test/neat/neat.telemetry.parity.test.ts +42 -0
  215. package/test/neat/neat.telemetry.stream.test.ts +19 -0
  216. package/test/neat/neat.telemetry.test.ts +16 -0
  217. package/test/neat/neat.test.ts +422 -0
  218. package/test/neat/neat.utilities.test.ts +44 -0
  219. package/test/network/__suppress_console.ts +9 -0
  220. package/test/network/acyclic.topoorder.test.ts +17 -0
  221. package/test/network/checkpoint.metricshook.test.ts +36 -0
  222. package/test/network/error.handling.test.ts +581 -0
  223. package/test/network/evolution.test.ts +285 -0
  224. package/test/network/genetic.test.ts +208 -0
  225. package/test/network/learning.capability.test.ts +244 -0
  226. package/test/network/mutation.effects.test.ts +492 -0
  227. package/test/network/network.activate.test.ts +115 -0
  228. package/test/network/network.activateBatch.test.ts +30 -0
  229. package/test/network/network.deterministic.test.ts +64 -0
  230. package/test/network/network.evolve.branches.test.ts +75 -0
  231. package/test/network/network.evolve.multithread.branches.test.ts +83 -0
  232. package/test/network/network.evolve.test.ts +100 -0
  233. package/test/network/network.gating.removal.test.ts +93 -0
  234. package/test/network/network.mutate.additional.test.ts +145 -0
  235. package/test/network/network.mutate.edgecases.test.ts +101 -0
  236. package/test/network/network.mutate.test.ts +101 -0
  237. package/test/network/network.prune.earlyexit.test.ts +38 -0
  238. package/test/network/network.remove.errors.test.ts +45 -0
  239. package/test/network/network.slab.fallbacks.test.ts +22 -0
  240. package/test/network/network.stats.test.ts +45 -0
  241. package/test/network/network.training.advanced.test.ts +149 -0
  242. package/test/network/network.training.basic.test.ts +228 -0
  243. package/test/network/network.training.helpers.test.ts +183 -0
  244. package/test/network/onnx.export.test.ts +310 -0
  245. package/test/network/onnx.import.test.ts +129 -0
  246. package/test/network/pruning.topology.test.ts +282 -0
  247. package/test/network/regularization.determinism.test.ts +83 -0
  248. package/test/network/regularization.dropconnect.test.ts +17 -0
  249. package/test/network/regularization.dropconnect.validation.test.ts +18 -0
  250. package/test/network/regularization.stochasticdepth.test.ts +27 -0
  251. package/test/network/regularization.test.ts +843 -0
  252. package/test/network/regularization.weightnoise.test.ts +30 -0
  253. package/test/network/setupTests.ts +2 -0
  254. package/test/network/standalone.test.ts +332 -0
  255. package/test/network/structure.serialization.test.ts +660 -0
  256. package/test/training/training.determinism.mixed-precision.test.ts +134 -0
  257. package/test/training/training.earlystopping.test.ts +91 -0
  258. package/test/training/training.edge-cases.test.ts +91 -0
  259. package/test/training/training.extensions.test.ts +47 -0
  260. package/test/training/training.gradient.features.test.ts +110 -0
  261. package/test/training/training.gradient.refinements.test.ts +170 -0
  262. package/test/training/training.gradient.separate-bias.test.ts +41 -0
  263. package/test/training/training.optimizer.test.ts +48 -0
  264. package/test/training/training.plateau.smoothing.test.ts +58 -0
  265. package/test/training/training.smoothing.types.test.ts +174 -0
  266. package/test/training/training.train.options.coverage.test.ts +52 -0
  267. package/test/utils/console-helper.ts +76 -0
  268. package/test/utils/jest-setup.ts +60 -0
  269. package/test/utils/test-helpers.ts +175 -0
  270. package/tsconfig.docs.json +12 -0
  271. package/tsconfig.json +21 -0
  272. package/webpack.config.js +49 -0
@@ -0,0 +1,146 @@
1
+ import groupConnectionDefault, {
2
+ groupConnection,
3
+ } from '../../src/methods/connection';
4
+
5
+ describe('Group Connection Methods', () => {
6
+ describe('ALL_TO_ALL', () => {
7
+ describe('Scenario: Existence', () => {
8
+ it('should exist', () => {
9
+ // Arrange
10
+ // Act
11
+ // Assert
12
+ expect(groupConnection.ALL_TO_ALL).toBeDefined();
13
+ });
14
+ it('should not be undefined', () => {
15
+ // Arrange
16
+ // Act
17
+ // Assert
18
+ expect(groupConnection.ALL_TO_ALL).not.toBeUndefined();
19
+ });
20
+ });
21
+ describe('Scenario: Name property', () => {
22
+ it('should have correct name property', () => {
23
+ // Arrange
24
+ // Act
25
+ // Assert
26
+ expect(groupConnection.ALL_TO_ALL.name).toBe('ALL_TO_ALL');
27
+ });
28
+ it('should not have incorrect name property', () => {
29
+ // Arrange
30
+ // Act
31
+ // Assert
32
+ expect(groupConnection.ALL_TO_ALL.name).not.toBe('WRONG_NAME');
33
+ });
34
+ });
35
+ });
36
+
37
+ describe('ALL_TO_ELSE', () => {
38
+ describe('Scenario: Existence', () => {
39
+ it('should exist', () => {
40
+ // Arrange
41
+ // Act
42
+ // Assert
43
+ expect(groupConnection.ALL_TO_ELSE).toBeDefined();
44
+ });
45
+ it('should not be undefined', () => {
46
+ // Arrange
47
+ // Act
48
+ // Assert
49
+ expect(groupConnection.ALL_TO_ELSE).not.toBeUndefined();
50
+ });
51
+ });
52
+ describe('Scenario: Name property', () => {
53
+ it('should have correct name property', () => {
54
+ // Arrange
55
+ // Act
56
+ // Assert
57
+ expect(groupConnection.ALL_TO_ELSE.name).toBe('ALL_TO_ELSE');
58
+ });
59
+ it('should not have incorrect name property', () => {
60
+ // Arrange
61
+ // Act
62
+ // Assert
63
+ expect(groupConnection.ALL_TO_ELSE.name).not.toBe('WRONG_NAME');
64
+ });
65
+ });
66
+ });
67
+
68
+ describe('ONE_TO_ONE', () => {
69
+ describe('Scenario: Existence', () => {
70
+ it('should exist', () => {
71
+ // Arrange
72
+ // Act
73
+ // Assert
74
+ expect(groupConnection.ONE_TO_ONE).toBeDefined();
75
+ });
76
+ it('should not be undefined', () => {
77
+ // Arrange
78
+ // Act
79
+ // Assert
80
+ expect(groupConnection.ONE_TO_ONE).not.toBeUndefined();
81
+ });
82
+ });
83
+ describe('Scenario: Name property', () => {
84
+ it('should have correct name property', () => {
85
+ // Arrange
86
+ // Act
87
+ // Assert
88
+ expect(groupConnection.ONE_TO_ONE.name).toBe('ONE_TO_ONE');
89
+ });
90
+ it('should not have incorrect name property', () => {
91
+ // Arrange
92
+ // Act
93
+ // Assert
94
+ expect(groupConnection.ONE_TO_ONE.name).not.toBe('WRONG_NAME');
95
+ });
96
+ });
97
+ });
98
+
99
+ describe('Utility & Integrity', () => {
100
+ describe('Scenario: Default export', () => {
101
+ it('should export groupConnection as default', () => {
102
+ // Arrange
103
+ // Act
104
+ // Assert
105
+ expect(groupConnectionDefault).toBe(groupConnection);
106
+ });
107
+ });
108
+ describe('Scenario: Object shape', () => {
109
+ it('should have all required keys', () => {
110
+ // Arrange
111
+ // Act
112
+ // Assert
113
+ expect(Object.keys(groupConnection).sort()).toEqual(
114
+ ['ALL_TO_ALL', 'ALL_TO_ELSE', 'ONE_TO_ONE'].sort()
115
+ );
116
+ });
117
+ });
118
+ describe('Scenario: Immutability', () => {
119
+ it('should not allow mutation of groupConnection object', () => {
120
+ // Arrange
121
+ // Act
122
+ // Assert
123
+ expect(() => {
124
+ (groupConnection as any)['NEW_PROP'] = 123;
125
+ }).toThrow(TypeError);
126
+ });
127
+ it('should not allow mutation of ALL_TO_ALL property', () => {
128
+ // Arrange
129
+ // Act
130
+ // Assert
131
+ expect(() => {
132
+ (groupConnection.ALL_TO_ALL as any)['name'] = 'MUTATED';
133
+ }).toThrow(TypeError);
134
+ });
135
+ it('should be deeply frozen', () => {
136
+ // Arrange
137
+ // Act
138
+ // Assert
139
+ expect(Object.isFrozen(groupConnection)).toBe(true);
140
+ expect(Object.isFrozen(groupConnection.ALL_TO_ALL)).toBe(true);
141
+ expect(Object.isFrozen(groupConnection.ALL_TO_ELSE)).toBe(true);
142
+ expect(Object.isFrozen(groupConnection.ONE_TO_ONE)).toBe(true);
143
+ });
144
+ });
145
+ });
146
+ });