@realsee/dnalogel 2.1.0-alpha.15 → 2.1.0-alpha.17

package/libs/node_modules/glob/sync.js

@@ -1,405 +0,0 @@
-module.exports = globSync;
-globSync.GlobSync = GlobSync;
-var rp = require('fs.realpath');
-var minimatch = require('minimatch');
-var Minimatch = minimatch.Minimatch;
-var Glob = require('./glob.js').Glob;
-var util = require('util');
-var path = require('path');
-var assert = require('assert');
-var isAbsolute = require('path').isAbsolute;
-var common = require('./common.js');
-var setopts = common.setopts;
-var ownProp = common.ownProp;
-var childrenIgnored = common.childrenIgnored;
-var isIgnored = common.isIgnored;
-function globSync(pattern, options) {
-    if (typeof options === 'function' || arguments.length === 3)
-        throw new TypeError('callback provided to sync glob\n' +
-            'See: https://github.com/isaacs/node-glob/issues/167');
-    return new GlobSync(pattern, options).found;
-}
-function GlobSync(pattern, options) {
-    if (!pattern)
-        throw new Error('must provide pattern');
-    if (typeof options === 'function' || arguments.length === 3)
-        throw new TypeError('callback provided to sync glob\n' +
-            'See: https://github.com/isaacs/node-glob/issues/167');
-    if (!(this instanceof GlobSync))
-        return new GlobSync(pattern, options);
-    setopts(this, pattern, options);
-    if (this.noprocess)
-        return this;
-    var n = this.minimatch.set.length;
-    this.matches = new Array(n);
-    for (var i = 0; i < n; i++) {
-        this._process(this.minimatch.set[i], i, false);
-    }
-    this._finish();
-}
-GlobSync.prototype._finish = function () {
-    assert.ok(this instanceof GlobSync);
-    if (this.realpath) {
-        var self = this;
-        this.matches.forEach(function (matchset, index) {
-            var set = self.matches[index] = Object.create(null);
-            for (var p in matchset) {
-                try {
-                    p = self._makeAbs(p);
-                    var real = rp.realpathSync(p, self.realpathCache);
-                    set[real] = true;
-                }
-                catch (er) {
-                    if (er.syscall === 'stat')
-                        set[self._makeAbs(p)] = true;
-                    else
-                        throw er;
-                }
-            }
-        });
-    }
-    common.finish(this);
-};
-GlobSync.prototype._process = function (pattern, index, inGlobStar) {
-    assert.ok(this instanceof GlobSync);
-    // Get the first [n] parts of pattern that are all strings.
-    var n = 0;
-    while (typeof pattern[n] === 'string') {
-        n++;
-    }
-    // now n is the index of the first one that is *not* a string.
-    // See if there's anything else
-    var prefix;
-    switch (n) {
-        // if not, then this is rather simple
-        case pattern.length:
-            this._processSimple(pattern.join('/'), index);
-            return;
-        case 0:
-            // pattern *starts* with some non-trivial item.
-            // going to readdir(cwd), but not include the prefix in matches.
-            prefix = null;
-            break;
-        default:
-            // pattern has some string bits in the front.
-            // whatever it starts with, whether that's 'absolute' like /foo/bar,
-            // or 'relative' like '../baz'
-            prefix = pattern.slice(0, n).join('/');
-            break;
-    }
-    var remain = pattern.slice(n);
-    // get the list of entries.
-    var read;
-    if (prefix === null)
-        read = '.';
-    else if (isAbsolute(prefix) ||
-        isAbsolute(pattern.map(function (p) {
-            return typeof p === 'string' ? p : '[*]';
-        }).join('/'))) {
-        if (!prefix || !isAbsolute(prefix))
-            prefix = '/' + prefix;
-        read = prefix;
-    }
-    else
-        read = prefix;
-    var abs = this._makeAbs(read);
-    //if ignored, skip processing
-    if (childrenIgnored(this, read))
-        return;
-    var isGlobStar = remain[0] === minimatch.GLOBSTAR;
-    if (isGlobStar)
-        this._processGlobStar(prefix, read, abs, remain, index, inGlobStar);
-    else
-        this._processReaddir(prefix, read, abs, remain, index, inGlobStar);
-};
-GlobSync.prototype._processReaddir = function (prefix, read, abs, remain, index, inGlobStar) {
-    var entries = this._readdir(abs, inGlobStar);
-    // if the abs isn't a dir, then nothing can match!
-    if (!entries)
-        return;
-    // It will only match dot entries if it starts with a dot, or if
-    // dot is set.  Stuff like @(.foo|.bar) isn't allowed.
-    var pn = remain[0];
-    var negate = !!this.minimatch.negate;
-    var rawGlob = pn._glob;
-    var dotOk = this.dot || rawGlob.charAt(0) === '.';
-    var matchedEntries = [];
-    for (var i = 0; i < entries.length; i++) {
-        var e = entries[i];
-        if (e.charAt(0) !== '.' || dotOk) {
-            var m;
-            if (negate && !prefix) {
-                m = !e.match(pn);
-            }
-            else {
-                m = e.match(pn);
-            }
-            if (m)
-                matchedEntries.push(e);
-        }
-    }
-    var len = matchedEntries.length;
-    // If there are no matched entries, then nothing matches.
-    if (len === 0)
-        return;
-    // if this is the last remaining pattern bit, then no need for
-    // an additional stat *unless* the user has specified mark or
-    // stat explicitly.  We know they exist, since readdir returned
-    // them.
-    if (remain.length === 1 && !this.mark && !this.stat) {
-        if (!this.matches[index])
-            this.matches[index] = Object.create(null);
-        for (var i = 0; i < len; i++) {
-            var e = matchedEntries[i];
-            if (prefix) {
-                if (prefix.slice(-1) !== '/')
-                    e = prefix + '/' + e;
-                else
-                    e = prefix + e;
-            }
-            if (e.charAt(0) === '/' && !this.nomount) {
-                e = path.join(this.root, e);
-            }
-            this._emitMatch(index, e);
-        }
-        // This was the last one, and no stats were needed
-        return;
-    }
-    // now test all matched entries as stand-ins for that part
-    // of the pattern.
-    remain.shift();
-    for (var i = 0; i < len; i++) {
-        var e = matchedEntries[i];
-        var newPattern;
-        if (prefix)
-            newPattern = [prefix, e];
-        else
-            newPattern = [e];
-        this._process(newPattern.concat(remain), index, inGlobStar);
-    }
-};
-GlobSync.prototype._emitMatch = function (index, e) {
-    if (isIgnored(this, e))
-        return;
-    var abs = this._makeAbs(e);
-    if (this.mark)
-        e = this._mark(e);
-    if (this.absolute) {
-        e = abs;
-    }
-    if (this.matches[index][e])
-        return;
-    if (this.nodir) {
-        var c = this.cache[abs];
-        if (c === 'DIR' || Array.isArray(c))
-            return;
-    }
-    this.matches[index][e] = true;
-    if (this.stat)
-        this._stat(e);
-};
-GlobSync.prototype._readdirInGlobStar = function (abs) {
-    // follow all symlinked directories forever
-    // just proceed as if this is a non-globstar situation
-    if (this.follow)
-        return this._readdir(abs, false);
-    var entries;
-    var lstat;
-    var stat;
-    try {
-        lstat = this.fs.lstatSync(abs);
-    }
-    catch (er) {
-        if (er.code === 'ENOENT') {
-            // lstat failed, doesn't exist
-            return null;
-        }
-    }
-    var isSym = lstat && lstat.isSymbolicLink();
-    this.symlinks[abs] = isSym;
-    // If it's not a symlink or a dir, then it's definitely a regular file.
-    // don't bother doing a readdir in that case.
-    if (!isSym && lstat && !lstat.isDirectory())
-        this.cache[abs] = 'FILE';
-    else
-        entries = this._readdir(abs, false);
-    return entries;
-};
-GlobSync.prototype._readdir = function (abs, inGlobStar) {
-    var entries;
-    if (inGlobStar && !ownProp(this.symlinks, abs))
-        return this._readdirInGlobStar(abs);
-    if (ownProp(this.cache, abs)) {
-        var c = this.cache[abs];
-        if (!c || c === 'FILE')
-            return null;
-        if (Array.isArray(c))
-            return c;
-    }
-    try {
-        return this._readdirEntries(abs, this.fs.readdirSync(abs));
-    }
-    catch (er) {
-        this._readdirError(abs, er);
-        return null;
-    }
-};
-GlobSync.prototype._readdirEntries = function (abs, entries) {
-    // if we haven't asked to stat everything, then just
-    // assume that everything in there exists, so we can avoid
-    // having to stat it a second time.
-    if (!this.mark && !this.stat) {
-        for (var i = 0; i < entries.length; i++) {
-            var e = entries[i];
-            if (abs === '/')
-                e = abs + e;
-            else
-                e = abs + '/' + e;
-            this.cache[e] = true;
-        }
-    }
-    this.cache[abs] = entries;
-    // mark and cache dir-ness
-    return entries;
-};
-GlobSync.prototype._readdirError = function (f, er) {
-    // handle errors, and cache the information
-    switch (er.code) {
-        case 'ENOTSUP': // https://github.com/isaacs/node-glob/issues/205
-        case 'ENOTDIR': // totally normal. means it *does* exist.
-            var abs = this._makeAbs(f);
-            this.cache[abs] = 'FILE';
-            if (abs === this.cwdAbs) {
-                var error = new Error(er.code + ' invalid cwd ' + this.cwd);
-                error.path = this.cwd;
-                error.code = er.code;
-                throw error;
-            }
-            break;
-        case 'ENOENT': // not terribly unusual
-        case 'ELOOP':
-        case 'ENAMETOOLONG':
-        case 'UNKNOWN':
-            this.cache[this._makeAbs(f)] = false;
-            break;
-        default: // some unusual error.  Treat as failure.
-            this.cache[this._makeAbs(f)] = false;
-            if (this.strict)
-                throw er;
-            if (!this.silent)
-                console.error('glob error', er);
-            break;
-    }
-};
-GlobSync.prototype._processGlobStar = function (prefix, read, abs, remain, index, inGlobStar) {
-    var entries = this._readdir(abs, inGlobStar);
-    // no entries means not a dir, so it can never have matches
-    // foo.txt/** doesn't match foo.txt
-    if (!entries)
-        return;
-    // test without the globstar, and with every child both below
-    // and replacing the globstar.
-    var remainWithoutGlobStar = remain.slice(1);
-    var gspref = prefix ? [prefix] : [];
-    var noGlobStar = gspref.concat(remainWithoutGlobStar);
-    // the noGlobStar pattern exits the inGlobStar state
-    this._process(noGlobStar, index, false);
-    var len = entries.length;
-    var isSym = this.symlinks[abs];
-    // If it's a symlink, and we're in a globstar, then stop
-    if (isSym && inGlobStar)
-        return;
-    for (var i = 0; i < len; i++) {
-        var e = entries[i];
-        if (e.charAt(0) === '.' && !this.dot)
-            continue;
-        // these two cases enter the inGlobStar state
-        var instead = gspref.concat(entries[i], remainWithoutGlobStar);
-        this._process(instead, index, true);
-        var below = gspref.concat(entries[i], remain);
-        this._process(below, index, true);
-    }
-};
-GlobSync.prototype._processSimple = function (prefix, index) {
-    // XXX review this.  Shouldn't it be doing the mounting etc
-    // before doing stat?  kinda weird?
-    var exists = this._stat(prefix);
-    if (!this.matches[index])
-        this.matches[index] = Object.create(null);
-    // If it doesn't exist, then just mark the lack of results
-    if (!exists)
-        return;
-    if (prefix && isAbsolute(prefix) && !this.nomount) {
-        var trail = /[\/\\]$/.test(prefix);
-        if (prefix.charAt(0) === '/') {
-            prefix = path.join(this.root, prefix);
-        }
-        else {
-            prefix = path.resolve(this.root, prefix);
-            if (trail)
-                prefix += '/';
-        }
-    }
-    if (process.platform === 'win32')
-        prefix = prefix.replace(/\\/g, '/');
-    // Mark this as a match
-    this._emitMatch(index, prefix);
-};
-// Returns either 'DIR', 'FILE', or false
-GlobSync.prototype._stat = function (f) {
-    var abs = this._makeAbs(f);
-    var needDir = f.slice(-1) === '/';
-    if (f.length > this.maxLength)
-        return false;
-    if (!this.stat && ownProp(this.cache, abs)) {
-        var c = this.cache[abs];
-        if (Array.isArray(c))
-            c = 'DIR';
-        // It exists, but maybe not how we need it
-        if (!needDir || c === 'DIR')
-            return c;
-        if (needDir && c === 'FILE')
-            return false;
-        // otherwise we have to stat, because maybe c=true
-        // if we know it exists, but not what it is.
-    }
-    var exists;
-    var stat = this.statCache[abs];
-    if (!stat) {
-        var lstat;
-        try {
-            lstat = this.fs.lstatSync(abs);
-        }
-        catch (er) {
-            if (er && (er.code === 'ENOENT' || er.code === 'ENOTDIR')) {
-                this.statCache[abs] = false;
-                return false;
-            }
-        }
-        if (lstat && lstat.isSymbolicLink()) {
-            try {
-                stat = this.fs.statSync(abs);
-            }
-            catch (er) {
-                stat = lstat;
-            }
-        }
-        else {
-            stat = lstat;
-        }
-    }
-    this.statCache[abs] = stat;
-    var c = true;
-    if (stat)
-        c = stat.isDirectory() ? 'DIR' : 'FILE';
-    this.cache[abs] = this.cache[abs] || c;
-    if (needDir && c === 'FILE')
-        return false;
-    return c;
-};
-GlobSync.prototype._mark = function (p) {
-    return common.mark(this, p);
-};
-GlobSync.prototype._makeAbs = function (f) {
-    return common.makeAbs(this, f);
-};

package/libs/node_modules/minimatch/lib/path.d.ts

@@ -1 +0,0 @@
-export const sep: string;

package/libs/node_modules/minimatch/lib/path.js

@@ -1,4 +0,0 @@
-const isWindows = typeof process === 'object' &&
-    process &&
-    process.platform === 'win32';
-module.exports = isWindows ? { sep: '\\' } : { sep: '/' };

package/libs/node_modules/minimatch/minimatch.d.ts

@@ -1,36 +0,0 @@
-declare function _exports(p: any, pattern: any, options?: {}): boolean;
-declare namespace _exports {
-    export const sep: string;
-    export { GLOBSTAR };
-    export function filter(pattern: any, options?: {}): (p: any, i: any, list: any) => boolean;
-    export function defaults(def: any): any;
-    export function braceExpand(pattern: any, options: any): any;
-    export function makeRe(pattern: any, options: any): boolean | RegExp;
-    export function match(list: any, pattern: any, options?: {}): any;
-    export { Minimatch };
-}
-export = _exports;
-declare const GLOBSTAR: unique symbol;
-declare class Minimatch {
-    static defaults(def: any): any;
-    constructor(pattern: any, options: any);
-    options: any;
-    set: any[];
-    pattern: any;
-    windowsPathsNoEscape: boolean;
-    regexp: boolean | RegExp;
-    negate: boolean;
-    comment: boolean;
-    empty: boolean;
-    partial: boolean;
-    debug(): void;
-    make(): void;
-    globSet: any;
-    globParts: any;
-    parseNegate(): void;
-    matchOne(file: any, pattern: any, partial: any): any;
-    braceExpand(): any;
-    parse(pattern: any, isSub: any): any;
-    makeRe(): boolean | RegExp;
-    match(f: any, partial?: boolean): boolean;
-}